AlfalfaGEDB | Msa0003080

M. sativa cultivar zhongmu-4 / Msa0003080

KEGG: -
GO: GO:0000325 GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0005938 GO:0006521 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009832 GO:0009834 GO:0009893 GO:0009914 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010565 GO:0010646 GO:0010817 GO:0010928 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0019222 GO:0022857 GO:0023051 GO:0023052 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0032350 GO:0032352 GO:0032502 GO:0032870 GO:0032989 GO:0033238 GO:0033240 GO:0040007 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045764 GO:0048518 GO:0048522 GO:0048583 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060560 GO:0060918 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0080090 GO:0090354 GO:0090355 GO:0090357 GO:0090358 GO:0098588 GO:0098805 GO:0099568
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003080	XP_003589345.1	98.005	401	4	3	1	398	1	400	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003080	sp\|Q94AP3\|WAT1_ARATH	74.378	402	86	6	1	398	1	389	0.0	592

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0005020	0.808951	2.406684e-50	-8.615850e-47
Msa0003080	Msa0008040	0.818437	1.960885e-52	-8.615850e-47
Msa0003080	Msa0014770	0.821360	4.209539e-53	-8.615850e-47
Msa0003080	Msa0015150	0.816434	5.542385e-52	-8.615850e-47
Msa0003080	Msa0015570	0.802840	4.633939e-49	-8.615850e-47
Msa0003080	Msa0016040	0.805784	1.129286e-49	-8.615850e-47
Msa0003080	Msa0017670	0.818695	1.714201e-52	-8.615850e-47
Msa0003080	Msa0019900	0.813302	2.741401e-51	-8.615850e-47
Msa0003080	Msa0025160	0.880682	4.490423e-70	-8.615850e-47
Msa0003080	Msa0025580	0.853413	2.429606e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003080	MtrunA17_Chr1g0155761	98.005	401	4	3	1	398	1	400	0.0	787
Msa0003080	MtrunA17_Chr3g0142131	82.045	401	62	6	1	398	1	394	0.0	635
Msa0003080	MtrunA17_Chr6g0483401	56.793	368	124	3	30	397	19	351	4.75e-141	406
Msa0003080	MtrunA17_Chr5g0408001	38.544	371	222	3	18	386	7	373	4.27e-85	264
Msa0003080	MtrunA17_Chr5g0407971	41.618	346	190	5	18	359	8	345	4.92e-84	261
Msa0003080	MtrunA17_Chr5g0407991	38.587	368	218	3	18	385	6	365	1.57e-83	260
Msa0003080	MtrunA17_Chr5g0408041	40.000	365	209	4	23	385	13	369	5.36e-82	256
Msa0003080	MtrunA17_Chr5g0408031	39.554	359	205	4	18	374	7	355	2.86e-81	254
Msa0003080	MtrunA17_Chr7g0255561	38.304	342	197	1	18	359	11	338	6.73e-79	248
Msa0003080	MtrunA17_Chr7g0255581	38.304	342	197	1	18	359	11	338	6.73e-79	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003080	AT1G75500.1	74.378	402	86	6	1	398	1	389	0.0	592
Msa0003080	AT1G75500.2	74.378	402	86	6	1	398	1	389	0.0	592
Msa0003080	AT3G53210.1	52.480	383	160	3	16	393	4	369	1.25e-142	410
Msa0003080	AT3G18200.2	55.135	370	146	2	16	385	29	378	2.27e-140	405
Msa0003080	AT3G53210.3	56.877	269	99	2	16	284	4	255	4.47e-106	313
Msa0003080	AT3G53210.2	50.165	303	129	3	96	393	27	312	7.16e-103	307
Msa0003080	AT3G18200.1	49.627	268	115	2	118	385	1	248	1.17e-84	258
Msa0003080	AT4G30420.2	37.596	391	215	7	18	398	5	376	1.46e-78	247
Msa0003080	AT4G30420.1	37.922	385	210	7	24	398	1	366	7.91e-78	245
Msa0003080	AT5G45370.2	37.845	362	219	3	18	378	16	372	9.46e-78	245

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Find 114 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTCTCAAGATTAGAAT+TGG	0.317880	1_1:-5553861	Msa0003080:three_prime_UTR
AACATATATATAAAAGCATA+TGG	0.370997	1_1:+5553971	None:intergenic
AACCAGCATAACCAAACTGC+AGG	0.522465	1_1:+5556608	None:intergenic
AAGTGACAGAAAGACGAGCA+GGG	0.633913	1_1:+5555225	None:intergenic
AATCAAGGTTTCTATTTGCT+TGG	0.366777	1_1:-5555741	Msa0003080:CDS
AATGTCACTTGGTGATGCAA+AGG	0.570694	1_1:-5555342	Msa0003080:CDS
AATTTCTCAAGATTAGAATT+GGG	0.471413	1_1:-5553860	Msa0003080:three_prime_UTR
ACAGTACCAATGATTGATTT+TGG	0.182728	1_1:-5555368	Msa0003080:CDS
ACATATATATAAAAGCATAT+GGG	0.572868	1_1:+5553972	None:intergenic
ACATGCAGCTGAAATTTCTC+AGG	0.434745	1_1:+5556643	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAATTAGCAAAAGAAAGG+TGG	+	chr1_1:5553602-5553621	None:intergenic	30.0%
CTAATTAACCAACACTTGTT+TGG	-	chr1_1:5553613-5553632	Msa0003080:three_prime_UTR	30.0%
GTACAAAATTTCATGGATGA+GGG	+	chr1_1:5553986-5554005	None:intergenic	30.0%
TGTACAAAATTTCATGGATG+AGG	+	chr1_1:5553987-5554006	None:intergenic	30.0%
AGGAAGTTTAAATTAATCGG+TGG	+	chr1_1:5554399-5554418	None:intergenic	30.0%
AATCAAGGTTTCTATTTGCT+TGG	-	chr1_1:5554671-5554690	Msa0003080:intron	30.0%
ATCAAGGTTTCTATTTGCTT+GGG	-	chr1_1:5554672-5554691	Msa0003080:intron	30.0%
CTACTTGGACTATATATAGT+TGG	+	chr1_1:5554975-5554994	None:intergenic	30.0%
ATTGTCCCAAAATCAATCAT+TGG	+	chr1_1:5555053-5555072	None:intergenic	30.0%
CTTGGATGTCTTTATCTAAT+TGG	-	chr1_1:5555107-5555126	Msa0003080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	5553591	5556843	5553591	ID=Msa0003080;Name=Msa0003080
chr1_1	mRNA	5553591	5556843	5553591	ID=Msa0003080-mRNA-1;Parent=Msa0003080;Name=Msa0003080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130\|1\|1\|1\|1\|1\|6\|591\|398
chr1_1	exon	5553591	5554371	5553591	ID=Msa0003080-mRNA-1:exon:1656;Parent=Msa0003080-mRNA-1
chr1_1	exon	5554867	5555018	5554867	ID=Msa0003080-mRNA-1:exon:1655;Parent=Msa0003080-mRNA-1
chr1_1	exon	5555109	5555562	5555109	ID=Msa0003080-mRNA-1:exon:1654;Parent=Msa0003080-mRNA-1
chr1_1	exon	5555657	5555773	5555657	ID=Msa0003080-mRNA-1:exon:1653;Parent=Msa0003080-mRNA-1
chr1_1	exon	5555986	5556048	5555986	ID=Msa0003080-mRNA-1:exon:1652;Parent=Msa0003080-mRNA-1
chr1_1	exon	5556493	5556843	5556493	ID=Msa0003080-mRNA-1:exon:1651;Parent=Msa0003080-mRNA-1
chr1_1	five_prime_UTR	5556714	5556843	5556714	ID=Msa0003080-mRNA-1:five_prime_utr;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5556493	5556713	5556493	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5555986	5556048	5555986	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5555657	5555773	5555657	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5555109	5555562	5555109	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5554867	5555018	5554867	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	CDS	5554182	5554371	5554182	ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1	three_prime_UTR	5553591	5554181	5553591	ID=Msa0003080-mRNA-1:three_prime_utr;Parent=Msa0003080-mRNA-1

Gene Sequence

>Msa0003080

ATGGCTGATTTAGGTTCAGCTTCTTCCAAGAGAATGTGGTGTTCTATCCCTGAGAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTATTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGATAGAGCAAGTGAGACTGAATCGAAAAGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCATCAGTGATTACATTATATCAAGGACCAACTATATATAGTCCAAGTAGTCACTTAAATAGTGGCACAAGCACAACAATAATAACAGAAGTAACAACAACAGTACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTACCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTCTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa0003080

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSSHLNSGTSTTIITEVTTTVPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*