AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003080 MtrunA17_Chr1g0155761 98.005 401 4 3 1 398 1 400 0.0 787
Msa0003080 MtrunA17_Chr3g0142131 82.045 401 62 6 1 398 1 394 0.0 635
Msa0003080 MtrunA17_Chr6g0483401 56.793 368 124 3 30 397 19 351 4.75e-141 406
Msa0003080 MtrunA17_Chr5g0408001 38.544 371 222 3 18 386 7 373 4.27e-85 264
Msa0003080 MtrunA17_Chr5g0407971 41.618 346 190 5 18 359 8 345 4.92e-84 261
Msa0003080 MtrunA17_Chr5g0407991 38.587 368 218 3 18 385 6 365 1.57e-83 260
Msa0003080 MtrunA17_Chr5g0408041 40.000 365 209 4 23 385 13 369 5.36e-82 256
Msa0003080 MtrunA17_Chr5g0408031 39.554 359 205 4 18 374 7 355 2.86e-81 254
Msa0003080 MtrunA17_Chr7g0255561 38.304 342 197 1 18 359 11 338 6.73e-79 248
Msa0003080 MtrunA17_Chr7g0255581 38.304 342 197 1 18 359 11 338 6.73e-79 248
Msa0003080 MtrunA17_Chr8g0369841 38.192 343 206 4 18 359 6 343 1.75e-78 247
Msa0003080 MtrunA17_Chr1g0160171 38.162 359 195 3 1 357 1 334 9.95e-78 245
Msa0003080 MtrunA17_Chr1g0186641 34.903 361 207 4 18 373 10 347 1.49e-76 241
Msa0003080 MtrunA17_Chr8g0354121 38.261 345 192 4 18 358 10 337 2.14e-76 242
Msa0003080 MtrunA17_Chr1g0186611 34.530 362 210 3 18 375 13 351 2.43e-76 240
Msa0003080 MtrunA17_Chr3g0114691 35.735 347 207 2 18 364 17 347 3.45e-76 241
Msa0003080 MtrunA17_Chr5g0404811 47.191 267 112 4 129 390 1 243 6.16e-76 236
Msa0003080 MtrunA17_Chr1g0186601 35.262 363 208 4 18 376 13 352 6.71e-76 239
Msa0003080 MtrunA17_Chr1g0160181 38.372 344 195 3 23 365 20 347 1.02e-75 240
Msa0003080 MtrunA17_Chr1g0171301 34.167 360 216 4 9 365 2 343 1.80e-74 236
Msa0003080 MtrunA17_Chr3g0081421 38.506 348 194 4 14 357 9 340 1.01e-73 235
Msa0003080 MtrunA17_Chr1g0164831 34.637 358 210 4 24 381 6 339 4.01e-73 231
Msa0003080 MtrunA17_Chr6g0463971 36.080 352 207 4 15 365 10 344 7.93e-73 231
Msa0003080 MtrunA17_Chr8g0334761 36.599 347 201 2 12 357 1 329 1.66e-72 231
Msa0003080 MtrunA17_Chr2g0284261 34.795 342 203 2 18 359 5 326 2.60e-72 230
Msa0003080 MtrunA17_Chr1g0186561 36.338 355 200 4 18 368 13 345 5.81e-72 229
Msa0003080 MtrunA17_Chr3g0081511 37.931 348 186 3 18 358 14 338 7.80e-72 230
Msa0003080 MtrunA17_Chr3g0114731 37.389 337 187 2 23 357 20 334 8.12e-71 228
Msa0003080 MtrunA17_Chr1g0186571 34.278 353 205 5 18 366 10 339 2.11e-70 225
Msa0003080 MtrunA17_Chr1g0182291 36.127 346 190 3 18 357 12 332 1.22e-68 221
Msa0003080 MtrunA17_Chr7g0271561 34.731 334 207 1 24 357 10 332 1.93e-68 221
Msa0003080 MtrunA17_Chr2g0310441 36.170 376 213 7 24 391 13 369 4.22e-68 219
Msa0003080 MtrunA17_Chr3g0114711 34.301 379 189 4 18 357 11 368 6.14e-68 220
Msa0003080 MtrunA17_Chr4g0059311 33.724 341 207 3 25 364 15 337 1.49e-67 218
Msa0003080 MtrunA17_Chr2g0278561 34.456 386 228 4 10 388 4 371 7.06e-66 214
Msa0003080 MtrunA17_Chr3g0129601 33.333 381 209 4 6 371 14 364 2.26e-65 212
Msa0003080 MtrunA17_Chr7g0263101 35.588 340 190 4 24 357 16 332 5.16e-65 212
Msa0003080 MtrunA17_Chr1g0184221 31.421 366 205 4 18 364 13 351 7.85e-65 211
Msa0003080 MtrunA17_Chr3g0114701 37.278 338 195 2 23 359 11 332 1.74e-64 211
Msa0003080 MtrunA17_Chr1g0160111 32.622 328 209 2 30 357 16 331 5.28e-63 206
Msa0003080 MtrunA17_Chr8g0383731 34.821 336 207 2 23 358 7 330 5.56e-63 206
Msa0003080 MtrunA17_Chr8g0334771 35.735 347 204 3 12 357 1 329 6.68e-61 201
Msa0003080 MtrunA17_Chr3g0129571 32.840 338 209 5 23 357 9 331 1.85e-60 199
Msa0003080 MtrunA17_Chr3g0126101 34.688 320 188 3 38 357 23 321 2.91e-60 198
Msa0003080 MtrunA17_Chr3g0129591 33.531 337 208 3 23 357 7 329 2.06e-59 197
Msa0003080 MtrunA17_Chr8g0334751 34.853 373 214 4 24 395 14 358 7.43e-59 195
Msa0003080 MtrunA17_Chr4g0073241 32.632 380 223 7 24 398 11 362 1.81e-58 194
Msa0003080 MtrunA17_Chr5g0413961 35.227 352 204 3 11 360 2 331 4.32e-58 193
Msa0003080 MtrunA17_Chr2g0290611 35.329 334 200 2 26 359 17 334 5.50e-58 193
Msa0003080 MtrunA17_Chr5g0413941 32.370 346 212 5 16 359 2 327 5.50e-56 187
Msa0003080 MtrunA17_Chr2g0278551 34.000 350 213 2 26 375 17 348 5.64e-56 189
Msa0003080 MtrunA17_Chr2g0278541 35.294 340 210 2 24 363 15 344 3.73e-55 186
Msa0003080 MtrunA17_Chr5g0413921 30.086 349 224 3 18 365 4 333 2.80e-52 177
Msa0003080 MtrunA17_Chr4g0050891 32.653 343 218 2 10 352 2 331 1.32e-51 176
Msa0003080 MtrunA17_Chr3g0129581 31.751 337 214 3 23 357 7 329 2.95e-51 175
Msa0003080 MtrunA17_Chr2g0332001 32.153 339 202 3 26 359 43 358 3.05e-51 176
Msa0003080 MtrunA17_Chr5g0413951 30.448 335 211 5 26 358 12 326 2.42e-50 172
Msa0003080 MtrunA17_Chr5g0404801 68.908 119 37 0 16 134 2 120 2.68e-50 165
Msa0003080 MtrunA17_Chr4g0051021 29.223 373 247 2 26 397 19 375 5.43e-50 172
Msa0003080 MtrunA17_Chr1g0150151 32.738 336 207 3 25 358 15 333 1.00e-48 169
Msa0003080 MtrunA17_Chr5g0428881 29.032 372 243 3 21 386 18 374 1.84e-48 169
Msa0003080 MtrunA17_Chr1g0177221 34.615 286 164 4 1 285 1 264 1.51e-47 163
Msa0003080 MtrunA17_Chr4g0050941 31.510 384 237 5 24 398 15 381 7.59e-47 164
Msa0003080 MtrunA17_Chr5g0413931 30.746 335 210 6 26 358 11 325 4.74e-46 161
Msa0003080 MtrunA17_Chr7g0227921 31.548 336 207 4 25 358 15 329 4.78e-43 154
Msa0003080 MtrunA17_Chr4g0050931 29.769 346 193 2 14 359 5 300 4.23e-42 150
Msa0003080 MtrunA17_Chr4g0050881 29.679 374 227 8 15 378 3 350 5.22e-42 151
Msa0003080 MtrunA17_Chr4g0056081 30.226 354 214 9 25 368 18 348 4.36e-41 148
Msa0003080 MtrunA17_Chr1g0211801 32.692 260 156 3 26 285 16 256 1.28e-40 145
Msa0003080 MtrunA17_Chr5g0441761 27.327 333 219 2 25 357 18 327 6.31e-40 145
Msa0003080 MtrunA17_Chr5g0399281 30.523 344 215 8 18 357 5 328 3.49e-38 140
Msa0003080 MtrunA17_Chr5g0429001 29.167 312 206 3 88 398 18 315 4.90e-38 139
Msa0003080 MtrunA17_Chr3g0084091 31.884 276 169 3 101 376 10 266 1.47e-37 137
Msa0003080 MtrunA17_Chr4g0051001 28.060 335 221 3 5 335 12 330 4.80e-37 137
Msa0003080 MtrunA17_Chr6g0451211 28.440 327 198 7 41 358 32 331 2.00e-36 136
Msa0003080 MtrunA17_Chr6g0451201 29.526 359 223 6 41 398 32 361 1.62e-33 128
Msa0003080 MtrunA17_Chr2g0278021 35.556 225 134 2 135 359 1 214 2.95e-32 123
Msa0003080 MtrunA17_Chr6g0451251 29.769 346 218 5 41 383 32 355 4.34e-32 124
Msa0003080 MtrunA17_Chr3g0126091 25.501 349 233 8 24 365 14 342 6.75e-31 121
Msa0003080 MtrunA17_Chr6g0451171 28.097 331 213 6 30 358 21 328 1.60e-30 120
Msa0003080 MtrunA17_Chr6g0451261 26.144 306 204 4 35 338 25 310 1.73e-30 124
Msa0003080 MtrunA17_Chr8g0334721 38.194 144 84 2 250 393 2 140 7.46e-29 110
Msa0003080 MtrunA17_Chr8g0334711 33.796 216 123 4 18 232 7 203 3.79e-27 107
Msa0003080 MtrunA17_Chr6g0451191 26.667 225 142 2 135 358 1 203 1.16e-20 90.1
Msa0003080 MtrunA17_Chr8g0334731 28.378 222 120 4 13 232 3 187 3.48e-19 85.1
Msa0003080 MtrunA17_Chr1g0177231 38.947 95 57 1 271 365 15 108 4.28e-16 74.3
Msa0003080 MtrunA17_Chr2g0278031 39.815 108 65 0 26 133 19 126 1.02e-14 70.5
Msa0003080 MtrunA17_Chr1g0182261 33.077 130 84 3 233 359 83 212 2.45e-14 72.0
Msa0003080 MtrunA17_Chr1g0172891 40.541 74 44 0 292 365 13 86 3.90e-14 68.6
Msa0003080 MtrunA17_Chr4g0050911 35.115 131 76 1 106 236 16 137 4.29e-14 69.7
Msa0003080 MtrunA17_Chr1g0211811 42.254 71 41 0 287 357 1 71 4.82e-14 67.4
Msa0003080 MtrunA17_Chr4g0050921 33.333 102 68 0 237 338 3 104 6.83e-14 68.2
Msa0003080 MtrunA17_Chr1g0172881 28.758 153 82 4 134 285 23 149 4.42e-12 63.9
Msa0003080 MtrunA17_Chr8g0334741 28.571 140 71 3 250 385 2 116 7.97e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003080 AT1G75500.1 74.378 402 86 6 1 398 1 389 0.0 592
Msa0003080 AT1G75500.2 74.378 402 86 6 1 398 1 389 0.0 592
Msa0003080 AT3G53210.1 52.480 383 160 3 16 393 4 369 1.25e-142 410
Msa0003080 AT3G18200.2 55.135 370 146 2 16 385 29 378 2.27e-140 405
Msa0003080 AT3G53210.3 56.877 269 99 2 16 284 4 255 4.47e-106 313
Msa0003080 AT3G53210.2 50.165 303 129 3 96 393 27 312 7.16e-103 307
Msa0003080 AT3G18200.1 49.627 268 115 2 118 385 1 248 1.17e-84 258
Msa0003080 AT4G30420.2 37.596 391 215 7 18 398 5 376 1.46e-78 247
Msa0003080 AT4G30420.1 37.922 385 210 7 24 398 1 366 7.91e-78 245
Msa0003080 AT5G45370.2 37.845 362 219 3 18 378 16 372 9.46e-78 245
Msa0003080 AT5G45370.4 37.845 362 219 3 18 378 16 372 9.46e-78 245
Msa0003080 AT5G45370.1 37.396 361 198 2 18 378 16 348 1.56e-77 244
Msa0003080 AT3G45870.1 41.667 336 186 3 18 352 8 334 1.50e-75 239
Msa0003080 AT5G07050.1 37.110 353 204 3 23 371 19 357 6.66e-75 238
Msa0003080 AT2G39510.1 36.765 340 188 3 24 358 10 327 1.90e-71 229
Msa0003080 AT1G09380.1 38.138 333 190 2 24 355 10 327 3.46e-71 228
Msa0003080 AT1G44800.1 34.174 357 205 3 18 365 7 342 5.45e-71 228
Msa0003080 AT4G08290.1 35.092 379 228 2 18 395 9 370 6.11e-71 228
Msa0003080 AT4G08300.1 34.181 354 212 3 18 368 7 342 1.00e-70 227
Msa0003080 AT2G40900.1 36.494 348 198 2 12 359 1 325 7.87e-70 225
Msa0003080 AT1G21890.1 33.791 364 228 2 23 384 12 364 8.60e-70 225
Msa0003080 AT3G45870.8 41.066 319 178 3 18 335 8 317 1.92e-69 222
Msa0003080 AT4G19185.1 39.118 340 197 4 23 359 22 354 1.89e-68 222
Msa0003080 AT3G30340.1 32.845 341 210 3 26 365 15 337 2.43e-67 218
Msa0003080 AT2G37460.1 35.180 361 203 6 18 372 11 346 5.78e-65 212
Msa0003080 AT1G43650.1 33.708 356 213 4 23 376 8 342 4.67e-63 206
Msa0003080 AT5G13670.1 33.333 342 211 3 18 358 4 329 6.54e-62 204
Msa0003080 AT4G01440.1 34.663 326 195 2 41 366 29 336 8.91e-62 203
Msa0003080 AT4G01430.1 33.631 336 205 3 24 357 11 330 1.96e-61 202
Msa0003080 AT1G01070.1 33.623 345 211 2 16 359 10 337 8.17e-61 201
Msa0003080 AT1G11450.3 34.718 337 200 3 24 359 18 335 1.09e-60 200
Msa0003080 AT3G56620.1 33.721 344 206 2 12 355 1 322 4.78e-59 197
Msa0003080 AT1G21890.2 34.603 315 193 2 23 335 12 315 8.85e-58 192
Msa0003080 AT3G45870.9 41.636 269 147 3 18 285 8 267 3.81e-57 189
Msa0003080 AT1G11450.5 35.806 310 179 3 51 359 1 291 6.51e-57 189
Msa0003080 AT4G01440.3 35.254 295 173 2 41 335 29 305 3.49e-56 187
Msa0003080 AT1G11450.2 36.213 301 172 3 60 359 3 284 2.07e-55 185
Msa0003080 AT1G11460.1 32.938 337 207 2 24 359 18 336 5.63e-55 185
Msa0003080 AT4G28040.1 30.612 343 205 4 18 357 4 316 7.98e-53 180
Msa0003080 AT4G28040.5 30.612 343 205 4 18 357 4 316 7.98e-53 180
Msa0003080 AT4G28040.3 30.612 343 205 4 18 357 4 316 7.98e-53 180
Msa0003080 AT4G28040.4 30.612 343 205 4 18 357 4 316 7.98e-53 180
Msa0003080 AT4G28040.2 30.612 343 205 4 18 357 4 316 7.98e-53 180
Msa0003080 AT5G64700.1 30.641 359 236 4 18 375 4 350 1.06e-52 179
Msa0003080 AT4G01430.2 32.803 314 193 3 24 335 11 308 1.09e-52 178
Msa0003080 AT1G11450.4 33.546 313 188 2 24 335 18 311 5.74e-52 176
Msa0003080 AT5G45370.6 35.636 275 171 3 105 378 1 270 9.33e-50 169
Msa0003080 AT5G45370.5 35.636 275 171 3 105 378 1 270 9.33e-50 169
Msa0003080 AT1G68170.2 30.366 382 243 3 14 394 5 364 2.13e-49 171
Msa0003080 AT1G01070.2 33.788 293 176 2 68 359 15 290 3.79e-49 169
Msa0003080 AT2G37450.2 32.665 349 183 8 24 366 11 313 5.40e-49 169
Msa0003080 AT4G19185.2 36.567 268 160 4 95 359 16 276 7.14e-49 168
Msa0003080 AT1G25270.1 32.440 336 211 2 24 359 5 324 8.10e-49 169
Msa0003080 AT1G68170.1 30.997 371 233 3 25 394 6 354 1.06e-48 169
Msa0003080 AT4G08290.2 35.821 268 154 2 18 284 9 259 1.23e-47 164
Msa0003080 AT4G01450.2 35.535 318 181 2 41 357 29 323 8.29e-47 164
Msa0003080 AT5G40210.1 30.882 340 193 7 25 360 16 317 1.37e-46 163
Msa0003080 AT3G28130.2 32.558 344 204 10 22 359 13 334 2.59e-46 162
Msa0003080 AT1G11450.1 36.398 261 146 3 100 359 2 243 2.82e-46 160
Msa0003080 AT5G40240.2 29.917 361 236 4 1 360 13 357 6.04e-46 162
Msa0003080 AT5G40240.1 31.157 337 215 4 25 360 23 343 8.25e-46 162
Msa0003080 AT5G40240.3 31.157 337 215 4 25 360 23 343 8.25e-46 162
Msa0003080 AT4G01450.1 34.797 296 169 2 41 335 29 301 3.99e-45 159
Msa0003080 AT3G30340.2 32.184 261 158 3 26 285 15 257 4.05e-45 157
Msa0003080 AT4G01440.4 35.918 245 139 2 41 285 29 255 1.32e-44 155
Msa0003080 AT3G28100.1 30.312 353 218 8 25 373 17 345 2.97e-43 154
Msa0003080 AT3G28050.1 30.749 374 224 10 25 390 15 361 7.12e-43 154
Msa0003080 AT5G40230.1 28.649 370 232 6 25 387 24 368 8.70e-43 154
Msa0003080 AT3G28130.5 33.463 257 151 6 105 359 10 248 6.52e-42 149
Msa0003080 AT3G28130.1 33.463 257 151 6 105 359 10 248 6.52e-42 149
Msa0003080 AT3G28070.2 30.147 272 166 5 105 374 8 257 6.09e-40 143
Msa0003080 AT1G70260.1 28.371 356 236 4 24 373 14 356 6.36e-40 146
Msa0003080 AT3G28080.1 30.117 342 209 7 25 359 17 335 1.32e-39 145
Msa0003080 AT3G28070.1 30.147 272 166 5 105 374 100 349 5.93e-39 143
Msa0003080 AT3G28080.5 31.128 257 157 4 105 359 8 246 7.45e-39 140
Msa0003080 AT3G28080.7 31.128 257 157 4 105 359 8 246 7.45e-39 140
Msa0003080 AT3G28080.8 31.128 257 157 4 105 359 8 246 7.45e-39 140
Msa0003080 AT3G28080.6 31.128 257 157 4 105 359 8 246 7.45e-39 140
Msa0003080 AT4G01440.5 31.557 244 149 2 123 366 3 228 1.04e-38 140
Msa0003080 AT4G01440.2 31.557 244 149 2 123 366 3 228 1.04e-38 140
Msa0003080 AT4G01450.4 34.553 246 137 2 41 285 29 251 2.01e-38 139
Msa0003080 AT3G28080.2 31.128 257 157 4 105 359 89 327 3.46e-38 141
Msa0003080 AT3G45870.5 37.727 220 127 3 134 352 49 259 1.59e-37 138
Msa0003080 AT5G45370.3 33.607 244 156 3 136 378 74 312 2.86e-37 137
Msa0003080 AT5G47470.1 27.401 354 226 6 9 357 17 344 1.91e-36 136
Msa0003080 AT5G47470.2 27.401 354 226 6 9 357 45 372 2.02e-36 137
Msa0003080 AT5G47470.3 27.401 354 226 6 9 357 45 372 2.45e-36 137
Msa0003080 AT1G43650.2 32.061 262 157 3 23 284 8 248 5.58e-36 133
Msa0003080 AT2G37450.3 33.459 266 146 6 107 366 1 241 7.23e-36 132
Msa0003080 AT4G16620.1 27.451 357 231 5 30 378 20 356 2.02e-34 131
Msa0003080 AT4G15540.1 28.056 360 223 5 25 383 20 344 5.20e-34 129
Msa0003080 AT4G15540.2 28.056 360 223 5 25 383 20 344 5.20e-34 129
Msa0003080 AT4G01450.3 35.514 214 114 2 41 253 29 219 3.45e-33 125
Msa0003080 AT3G45870.6 36.453 203 119 3 134 335 49 242 1.52e-31 120
Msa0003080 AT3G45870.7 36.453 203 119 3 134 335 49 242 1.52e-31 120
Msa0003080 AT1G60050.1 27.301 326 221 3 38 359 29 342 6.23e-31 122
Msa0003080 AT5G64700.2 31.967 244 153 4 29 271 15 246 2.88e-30 117
Msa0003080 AT3G45870.2 43.662 142 79 1 211 352 43 183 4.41e-30 116
Msa0003080 AT3G28130.3 30.837 227 137 6 135 359 1 209 1.43e-29 114
Msa0003080 AT4G01430.3 30.769 208 127 2 151 357 2 193 1.71e-29 114
Msa0003080 AT3G28070.3 28.755 233 146 4 105 335 100 314 1.26e-28 114
Msa0003080 AT3G28070.5 27.273 242 152 5 135 374 1 220 2.92e-27 108
Msa0003080 AT2G37450.1 36.301 146 92 1 222 366 129 274 1.25e-26 108
Msa0003080 AT3G28080.9 27.753 227 144 4 135 359 1 209 3.36e-26 105
Msa0003080 AT4G24980.1 27.726 321 148 7 38 358 3 239 1.09e-25 105
Msa0003080 AT4G16620.4 27.240 279 176 4 107 378 1 259 2.77e-24 101
Msa0003080 AT4G16620.2 27.240 279 176 4 107 378 1 259 2.77e-24 101
Msa0003080 AT3G28130.4 31.660 259 150 9 22 274 13 250 6.15e-24 100
Msa0003080 AT3G28100.3 31.102 254 152 6 25 274 17 251 2.39e-23 98.6
Msa0003080 AT3G28130.6 37.342 158 91 4 22 175 13 166 6.49e-21 90.9
Msa0003080 AT3G28100.2 38.562 153 90 3 25 175 17 167 1.30e-20 90.9
Msa0003080 AT4G16620.3 28.889 225 139 3 30 253 20 224 1.69e-20 90.9
Msa0003080 AT3G45870.3 35.948 153 88 3 134 285 49 192 2.68e-19 85.9
Msa0003080 AT3G45870.4 35.762 151 87 3 136 285 4 145 3.46e-19 84.3
Msa0003080 AT3G28080.3 36.646 161 90 4 25 178 17 172 4.09e-16 79.0
Msa0003080 AT3G28080.3 33.784 74 48 1 286 359 209 281 9.84e-11 62.8
Msa0003080 AT3G28080.4 47.887 71 37 0 105 175 8 78 2.88e-15 74.7
Msa0003080 AT3G28080.4 33.784 74 48 1 286 359 120 192 4.91e-11 62.4

Find 114 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGATGTCTTTATCTAAT+TGG 0.160867 1_1:-5555305 Msa0003080:CDS
CCTTCCATTTGCTTATTTCT+TGG 0.164985 1_1:-5556497 Msa0003080:CDS
ACAGTACCAATGATTGATTT+TGG 0.182728 1_1:-5555368 Msa0003080:CDS
TTTCTTTATGGTTTGATTTA+CGG 0.229174 1_1:-5553942 Msa0003080:three_prime_UTR
TATTCTACAATGGCTGATTT+AGG 0.243865 1_1:-5556700 Msa0003080:exon
TATGTTAGTTAATTTCTTTA+TGG 0.244766 1_1:-5553954 Msa0003080:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 1_1:-5555206 Msa0003080:CDS
TTGCATTTGCAGTACAAATA+TGG 0.283549 1_1:-5554977 Msa0003080:CDS
CTTAAACGGAGTAATCATTT+TGG 0.287235 1_1:-5553774 Msa0003080:three_prime_UTR
GCAATTTCTTCTTATTGCTT+TGG 0.291149 1_1:-5555177 Msa0003080:CDS
TGGGAGTGGTTTCAAAAGTA+TGG 0.304445 1_1:-5553841 Msa0003080:three_prime_UTR
CTAATTAACCAACACTTGTT+TGG 0.315906 1_1:-5556799 Msa0003080:five_prime_UTR
AAATTTCTCAAGATTAGAAT+TGG 0.317880 1_1:-5553861 Msa0003080:three_prime_UTR
ATCATGGCTTCTATTGCTTT+AGG 0.322920 1_1:-5554888 Msa0003080:CDS
GATGCTTTAGCGTGGCTTGC+GGG 0.332227 1_1:+5554225 None:intergenic
CAGAGGAAGTTTAAATTAAT+CGG 0.338959 1_1:+5556013 None:intergenic
CTAACTAACCGCGTATAAAA+TGG 0.340348 1_1:+5555100 None:intergenic
GGTTTCAAAAGTATGGTAAT+TGG 0.340685 1_1:-5553834 Msa0003080:three_prime_UTR
TAGCTAGGCCTCAATTAAAT+TGG 0.356448 1_1:-5556773 Msa0003080:five_prime_UTR
AATCAAGGTTTCTATTTGCT+TGG 0.366777 1_1:-5555741 Msa0003080:CDS
AACATATATATAAAAGCATA+TGG 0.370997 1_1:+5553971 None:intergenic
TCTTAGTAGATTATTTAGAT+TGG 0.388213 1_1:-5554079 Msa0003080:three_prime_UTR
CACACAAGCATGGTACTATA+AGG 0.389716 1_1:+5554134 None:intergenic
ATTGTTTGTCTTGGTCTGCT+TGG 0.391168 1_1:-5555280 Msa0003080:CDS
CTTAGTAGATTATTTAGATT+GGG 0.394466 1_1:-5554078 Msa0003080:three_prime_UTR
TTGCAGGGAGTGGTGGCATC+TGG 0.399814 1_1:-5555002 Msa0003080:intron
ATCAAGGTTTCTATTTGCTT+GGG 0.402879 1_1:-5555740 Msa0003080:CDS
GCCCTGCAGTTTGGTTATGC+TGG 0.404103 1_1:-5556610 Msa0003080:CDS
CCACTATTTAAGTGACTACT+TGG 0.407294 1_1:+5555425 None:intergenic
TAATTGGACATTGTTTGTCT+TGG 0.407693 1_1:-5555289 Msa0003080:CDS
GCCATGTTGGCCCTGCAGTT+TGG 0.410120 1_1:-5556619 Msa0003080:CDS
TGGACTATACTTTGTGTTGT+GGG 0.419500 1_1:-5554322 Msa0003080:CDS
GACGAGCAGGGTACTTCTTA+AGG 0.425673 1_1:+5555237 None:intergenic
CAGAAATTGTGACTCTTAAA+CGG 0.427224 1_1:-5553788 Msa0003080:three_prime_UTR
ACATGCAGCTGAAATTTCTC+AGG 0.434745 1_1:+5556643 None:intergenic
GCTACAACAAAAGTTTGAAC+AGG 0.438205 1_1:+5554912 None:intergenic
TTAATTACTAAAGTTAATAG+TGG 0.448428 1_1:-5553651 Msa0003080:three_prime_UTR
GCAATGATGTTCCTATAGAC+AGG 0.454821 1_1:+5556532 None:intergenic
TTGAAAGAAATGCTCAGGCT+TGG 0.458050 1_1:-5555151 Msa0003080:CDS
ATGGGAACATGTTGTAATAG+TGG 0.458354 1_1:-5554035 Msa0003080:three_prime_UTR
TTGGTTAATTAGCAAAAGAA+AGG 0.460569 1_1:+5556810 None:intergenic
TACAGGATTACAGCAAATCA+AGG 0.469868 1_1:-5555756 Msa0003080:intron
CCCTGCCATTACATTTCTCA+TGG 0.470693 1_1:-5555670 Msa0003080:CDS
AATTTCTCAAGATTAGAATT+GGG 0.471413 1_1:-5553860 Msa0003080:three_prime_UTR
TTCAAGAGCTGCACTTAACA+TGG 0.475828 1_1:-5556575 Msa0003080:CDS
ATTGTCCCAAAATCAATCAT+TGG 0.477316 1_1:+5555362 None:intergenic
GTTAATTAGCAAAAGAAAGG+TGG 0.482071 1_1:+5556813 None:intergenic
CAAATATGGTGCATTGATAG+AGG 0.486474 1_1:-5554963 Msa0003080:CDS
CCAAGTAGTCACTTAAATAG+TGG 0.486646 1_1:-5555425 Msa0003080:CDS
GTGAGACTGAATCGAAAAGA+TGG 0.488376 1_1:-5555530 Msa0003080:CDS
AGGTTTCTATTTGCTTGGGT+TGG 0.489312 1_1:-5555736 Msa0003080:CDS
GATGGAATTGCTAAAGTAGC+AGG 0.489379 1_1:-5555512 Msa0003080:CDS
CTGGACTATACTTTGTGTTG+TGG 0.492738 1_1:-5554323 Msa0003080:CDS
GAGTCCAAAGAAACATGTAT+AGG 0.500964 1_1:+5555202 None:intergenic
TTCTCATGGCAGTCATACTA+AGG 0.503575 1_1:-5555656 Msa0003080:intron
TTTAGGAGAAGAGTTCTACT+TGG 0.503735 1_1:-5554871 Msa0003080:CDS
GAAGTGACAGAAAGACGAGC+AGG 0.504587 1_1:+5555224 None:intergenic
GCCATGAGAAATGTAATGGC+AGG 0.506658 1_1:+5555669 None:intergenic
GATAGAACACCACATTCTCT+TGG 0.513393 1_1:+5556666 None:intergenic
ATAGTGGATGTCACTAAAAG+TGG 0.518080 1_1:-5554019 Msa0003080:three_prime_UTR
AGCAAAAGAAAGGTGGGAAG+TGG 0.518685 1_1:+5556820 None:intergenic
TTAATTAGCAAAAGAAAGGT+GGG 0.521416 1_1:+5556814 None:intergenic
AACCAGCATAACCAAACTGC+AGG 0.522465 1_1:+5556608 None:intergenic
CTACTTGGACTATATATAGT+TGG 0.532157 1_1:+5555440 None:intergenic
GAGAAGAGTTCTACTTGGGC+GGG 0.532422 1_1:-5554866 Msa0003080:intron
ATCATTATCATGACGTGGAA+GGG 0.532724 1_1:-5553887 Msa0003080:three_prime_UTR
ATGTCACTTGGTGATGCAAA+GGG 0.532729 1_1:-5555341 Msa0003080:CDS
GACTAATTTCACAAGGCTCT+AGG 0.533576 1_1:+5553994 None:intergenic
TGTATTGCTGATGCAAAGGT+AGG 0.537203 1_1:+5555702 None:intergenic
CTCAAGATTAGAATTGGGAG+TGG 0.539135 1_1:-5553855 Msa0003080:three_prime_UTR
CCAAGAAATAAGCAAATGGA+AGG 0.543346 1_1:+5556497 None:intergenic
AGCTAAAACCAAACAAGTGT+TGG 0.546313 1_1:+5556791 None:intergenic
TGATACACTGCAACAAACAC+TGG 0.547318 1_1:+5554936 None:intergenic
TAATTACTAAAGTTAATAGT+GGG 0.550090 1_1:-5553650 Msa0003080:three_prime_UTR
TATTAATTTGCAGGGAGTGG+TGG 0.551473 1_1:-5555009 Msa0003080:intron
TCAGTGATTACATTATATCA+AGG 0.554127 1_1:-5555464 Msa0003080:CDS
CATCATTATCATGACGTGGA+AGG 0.554222 1_1:-5553888 Msa0003080:three_prime_UTR
GTATTGCTGATGCAAAGGTA+GGG 0.556287 1_1:+5555703 None:intergenic
TTAGGAGAAGAGTTCTACTT+GGG 0.557775 1_1:-5554870 Msa0003080:CDS
GCAGGGTACTTCTTAAGGAC+AGG 0.561869 1_1:+5555242 None:intergenic
AGAGAAGAAATTATTTGCAA+AGG 0.564376 1_1:-5554289 Msa0003080:CDS
TAAAGCAATAGAAGCCATGA+TGG 0.564411 1_1:+5554890 None:intergenic
TCAGCTGCATGTGGCCATGT+TGG 0.564609 1_1:-5556632 Msa0003080:CDS
ACCAAACTGCAGGGCCAACA+TGG 0.565314 1_1:+5556618 None:intergenic
AATGTCACTTGGTGATGCAA+AGG 0.570694 1_1:-5555342 Msa0003080:CDS
GGTGCAGTGTTGATAGTAGC+TGG 0.570883 1_1:-5554342 Msa0003080:CDS
ACATATATATAAAAGCATAT+GGG 0.572868 1_1:+5553972 None:intergenic
TCTGTTGAAGAAGATAGGAA+TGG 0.578628 1_1:+5554192 None:intergenic
CAGCTTCTTCCAAGAGAATG+TGG 0.578874 1_1:-5556675 Msa0003080:CDS
TAGTGGATGTCACTAAAAGT+GGG 0.583894 1_1:-5554018 Msa0003080:three_prime_UTR
TCAATTCAGTTATTCTACAA+TGG 0.584317 1_1:-5556710 Msa0003080:exon
TGATGCTTTAGCGTGGCTTG+CGG 0.596033 1_1:+5554224 None:intergenic
CAATGATGTTCCTATAGACA+GGG 0.596068 1_1:+5556533 None:intergenic
ATAATGACCTAGATGCATGC+TGG 0.600022 1_1:-5553701 Msa0003080:three_prime_UTR
GACTGCCATGAGAAATGTAA+TGG 0.601131 1_1:+5555665 None:intergenic
GTTCTGTATTGCTGATGCAA+AGG 0.604446 1_1:+5555698 None:intergenic
AGAAATAAGCAAATGGAAGG+AGG 0.607370 1_1:+5556500 None:intergenic
GGAGAAGAGTTCTACTTGGG+CGG 0.607421 1_1:-5554867 Msa0003080:CDS
GTGCAGCTCTTGAAACAACA+TGG 0.618096 1_1:+5556584 None:intergenic
AGGAAGTTTAAATTAATCGG+TGG 0.623492 1_1:+5556016 None:intergenic
TCAAGAGCTGCACTTAACAT+GGG 0.631283 1_1:-5556574 Msa0003080:CDS
GGACTATACTTTGTGTTGTG+GGG 0.631775 1_1:-5554321 Msa0003080:CDS
AAGTGACAGAAAGACGAGCA+GGG 0.633913 1_1:+5555225 None:intergenic
CCATGAGAAATGTAATGGCA+GGG 0.635566 1_1:+5555670 None:intergenic
TGAGAAATTTCAGCTGCATG+TGG 0.640532 1_1:-5556641 Msa0003080:CDS
TATCACAACACACACAAGCA+TGG 0.644681 1_1:+5554124 None:intergenic
CATATGGGACTAATTTCACA+AGG 0.653189 1_1:+5553987 None:intergenic
CATGCAGCTGAAATTTCTCA+GGG 0.657899 1_1:+5556644 None:intergenic
TATTGCTGATGCAAAGGTAG+GGG 0.668908 1_1:+5555704 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677817 1_1:-5554960 Msa0003080:CDS
TAGTCATCATTATCATGACG+TGG 0.677835 1_1:-5553892 Msa0003080:three_prime_UTR
ACCAGCATAACCAAACTGCA+GGG 0.678569 1_1:+5556609 None:intergenic
GAGTGAGTGATGCTTTAGCG+TGG 0.695699 1_1:+5554217 None:intergenic
AGTGGATGTCACTAAAAGTG+GGG 0.699194 1_1:-5554017 Msa0003080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTATAAATTAA+AGG - chr1_1:5554536-5554555 Msa0003080:intron 0.0%
!! TATTTAATTATATTAAATTA+AGG - chr1_1:5554603-5554622 Msa0003080:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTAT+GGG - chr1_1:5556359-5556378 Msa0003080:intron 0.0%
!! ATAAATATATAAATGTTAAG+AGG + chr1_1:5554081-5554100 None:intergenic 10.0%
!!! CTTAGTTAATAATTTTTTAT+GGG + chr1_1:5554118-5554137 None:intergenic 10.0%
!!! ACTTAGTTAATAATTTTTTA+TGG + chr1_1:5554119-5554138 None:intergenic 10.0%
!!! TATTTTTTTTATTAATTTGC+AGG - chr1_1:5555394-5555413 Msa0003080:CDS 10.0%
!!! ATTTTTTTTATTAATTTGCA+GGG - chr1_1:5555395-5555414 Msa0003080:CDS 10.0%
!!! TCATAACCTTTTATAAAAAT+GGG - chr1_1:5554138-5554157 Msa0003080:three_prime_UTR 15.0%
!!! TGAAAGATATGTAATTTTAT+TGG - chr1_1:5554224-5554243 Msa0003080:CDS 15.0%
!!! GAAAGATATGTAATTTTATT+GGG - chr1_1:5554225-5554244 Msa0003080:CDS 15.0%
!! ATAATTCAGCATATTATTAA+AGG + chr1_1:5554637-5554656 None:intergenic 15.0%
!! TATCATAAACATTTGAATTA+AGG + chr1_1:5555595-5555614 None:intergenic 15.0%
!!! ATTGATTGTGATTTTATTTT+TGG - chr1_1:5555787-5555806 Msa0003080:intron 15.0%
!! TGAATAAAGTTAAATCAAAA+GGG + chr1_1:5556016-5556035 None:intergenic 15.0%
!! ATGAATAAAGTTAAATCAAA+AGG + chr1_1:5556017-5556036 None:intergenic 15.0%
!!! ACATATATATAAAAGCATAT+GGG + chr1_1:5556443-5556462 None:intergenic 15.0%
!!! AACATATATATAAAAGCATA+TGG + chr1_1:5556444-5556463 None:intergenic 15.0%
!! TATGTTAGTTAATTTCTTTA+TGG - chr1_1:5556458-5556477 Msa0003080:intron 15.0%
!! TTAATTACTAAAGTTAATAG+TGG - chr1_1:5556761-5556780 Msa0003080:five_prime_UTR 15.0%
!! TAATTACTAAAGTTAATAGT+GGG - chr1_1:5556762-5556781 Msa0003080:five_prime_UTR 15.0%
!!! AATTTTGACCAATTTAATTG+AGG + chr1_1:5553650-5553669 None:intergenic 20.0%
!! GTATAATGTACAAAATTTCA+TGG + chr1_1:5553993-5554012 None:intergenic 20.0%
!!! GAAATTTTGTACATTATACA+TGG - chr1_1:5553994-5554013 Msa0003080:three_prime_UTR 20.0%
!! CCAATAAAAAAAAAAAACTG+TGG + chr1_1:5554030-5554049 None:intergenic 20.0%
!!! CCACAGTTTTTTTTTTTTAT+TGG - chr1_1:5554027-5554046 Msa0003080:three_prime_UTR 20.0%
!! TTAAGAGAATATGCTAATTA+AGG + chr1_1:5554056-5554075 None:intergenic 20.0%
!! TTAATTAGCATATTCTCTTA+AGG - chr1_1:5554055-5554074 Msa0003080:three_prime_UTR 20.0%
!!! GTCATAACCTTTTATAAAAA+TGG - chr1_1:5554137-5554156 Msa0003080:three_prime_UTR 20.0%
!!! ATATTTAGTTCCGTTAAAAT+GGG + chr1_1:5554176-5554195 None:intergenic 20.0%
!!! AATATTTAGTTCCGTTAAAA+TGG + chr1_1:5554177-5554196 None:intergenic 20.0%
!! TATTGTCAAAAGTTTCATAT+AGG - chr1_1:5554193-5554212 Msa0003080:CDS 20.0%
!!! GCATATTATTAAAGGTATAA+AGG + chr1_1:5554629-5554648 None:intergenic 20.0%
!! AATAATATGCTGAATTATAC+AGG - chr1_1:5554639-5554658 Msa0003080:intron 20.0%
!!! ATATGCAAAATTTTATCAAC+AGG - chr1_1:5554850-5554869 Msa0003080:intron 20.0%
!!! AAGTTTTTGTTACCTAATTT+AGG - chr1_1:5555879-5555898 Msa0003080:intron 20.0%
!!! AGTTTTTGTTACCTAATTTA+GGG - chr1_1:5555880-5555899 Msa0003080:intron 20.0%
!!! TAATATCCCTTTTATATTAC+AGG - chr1_1:5556041-5556060 Msa0003080:intron 20.0%
!! AATGATCCTGTAATATAAAA+GGG + chr1_1:5556050-5556069 None:intergenic 20.0%
!! TCTTAGTAGATTATTTAGAT+TGG - chr1_1:5556333-5556352 Msa0003080:intron 20.0%
!! CTTAGTAGATTATTTAGATT+GGG - chr1_1:5556334-5556353 Msa0003080:intron 20.0%
!!! TTTCTTTATGGTTTGATTTA+CGG - chr1_1:5556470-5556489 Msa0003080:intron 20.0%
!! AAATTTCTCAAGATTAGAAT+TGG - chr1_1:5556551-5556570 Msa0003080:CDS 20.0%
!! AATTTCTCAAGATTAGAATT+GGG - chr1_1:5556552-5556571 Msa0003080:CDS 20.0%
! TTAATTAGCAAAAGAAAGGT+GGG + chr1_1:5553601-5553620 None:intergenic 25.0%
! TTGGTTAATTAGCAAAAGAA+AGG + chr1_1:5553605-5553624 None:intergenic 25.0%
! TCAATTCAGTTATTCTACAA+TGG - chr1_1:5553702-5553721 Msa0003080:three_prime_UTR 25.0%
!! TTTTCCAAGAAATAAGCAAA+TGG + chr1_1:5553922-5553941 None:intergenic 25.0%
! AATGAAATTGTTAAGAGGAA+TGG + chr1_1:5553952-5553971 None:intergenic 25.0%
! GTGTTAATGAAATTGTTAAG+AGG + chr1_1:5553957-5553976 None:intergenic 25.0%
! CAGAGGAAGTTTAAATTAAT+CGG + chr1_1:5554402-5554421 None:intergenic 25.0%
!! GGAACAATATTTTGTGTAAT+TGG - chr1_1:5554921-5554940 Msa0003080:CDS 25.0%
! TCAGTGATTACATTATATCA+AGG - chr1_1:5554948-5554967 Msa0003080:CDS 25.0%
! TAATTTAAACCTAATAGTCG+TGG + chr1_1:5555338-5555357 None:intergenic 25.0%
! TTGAATTAAGGATCGTAATT+AGG + chr1_1:5555583-5555602 None:intergenic 25.0%
! GTAACAAAAACTTGATCATA+GGG + chr1_1:5555872-5555891 None:intergenic 25.0%
! TTGAAGCAAAAAATCATCAT+AGG - chr1_1:5555919-5555938 Msa0003080:intron 25.0%
! TAGGATATACTACTATTGAA+TGG - chr1_1:5555938-5555957 Msa0003080:intron 25.0%
! CAATGATCCTGTAATATAAA+AGG + chr1_1:5556051-5556070 None:intergenic 25.0%
!! CTTTTATATTACAGGATCAT+TGG - chr1_1:5556049-5556068 Msa0003080:intron 25.0%
! AGAGAAGAAATTATTTGCAA+AGG - chr1_1:5556123-5556142 Msa0003080:intron 25.0%
GTTAATTAGCAAAAGAAAGG+TGG + chr1_1:5553602-5553621 None:intergenic 30.0%
CTAATTAACCAACACTTGTT+TGG - chr1_1:5553613-5553632 Msa0003080:three_prime_UTR 30.0%
! TATTCTACAATGGCTGATTT+AGG - chr1_1:5553712-5553731 Msa0003080:three_prime_UTR 30.0%
GTACAAAATTTCATGGATGA+GGG + chr1_1:5553986-5554005 None:intergenic 30.0%
TGTACAAAATTTCATGGATG+AGG + chr1_1:5553987-5554006 None:intergenic 30.0%
!! AACGTGCCCATTTTTATAAA+AGG + chr1_1:5554147-5554166 None:intergenic 30.0%
!!! CGTTTTAGTTCCCATTTTAA+CGG - chr1_1:5554163-5554182 Msa0003080:exon 30.0%
! GTTTCTTTTCCTTTTTGTTC+AGG - chr1_1:5554364-5554383 Msa0003080:intron 30.0%
AGGAAGTTTAAATTAATCGG+TGG + chr1_1:5554399-5554418 None:intergenic 30.0%
!!! TTCTTTTTTCTCGCACTTAT+TGG - chr1_1:5554426-5554445 Msa0003080:intron 30.0%
!!! TCTTTTTTCTCGCACTTATT+GGG - chr1_1:5554427-5554446 Msa0003080:intron 30.0%
AATCAAGGTTTCTATTTGCT+TGG - chr1_1:5554671-5554690 Msa0003080:intron 30.0%
ATCAAGGTTTCTATTTGCTT+GGG - chr1_1:5554672-5554691 Msa0003080:intron 30.0%
CTACTTGGACTATATATAGT+TGG + chr1_1:5554975-5554994 None:intergenic 30.0%
!! ACAGTACCAATGATTGATTT+TGG - chr1_1:5555044-5555063 Msa0003080:intron 30.0%
!! CAGTACCAATGATTGATTTT+GGG - chr1_1:5555045-5555064 Msa0003080:intron 30.0%
ATTGTCCCAAAATCAATCAT+TGG + chr1_1:5555053-5555072 None:intergenic 30.0%
CTTGGATGTCTTTATCTAAT+TGG - chr1_1:5555107-5555126 Msa0003080:intron 30.0%
TAATTGGACATTGTTTGTCT+TGG - chr1_1:5555123-5555142 Msa0003080:CDS 30.0%
ACTTCCTATACATGTTTCTT+TGG - chr1_1:5555206-5555225 Msa0003080:CDS 30.0%
GCAATTTCTTCTTATTGCTT+TGG - chr1_1:5555235-5555254 Msa0003080:CDS 30.0%
!!! TTTTATTAATTTGCAGGGAG+TGG - chr1_1:5555400-5555419 Msa0003080:CDS 30.0%
TTGCATTTGCAGTACAAATA+TGG - chr1_1:5555435-5555454 Msa0003080:CDS 30.0%
TAAGGATCGTAATTAGGATT+AGG + chr1_1:5555577-5555596 None:intergenic 30.0%
TAATTGCTTTGTGAGTGTTT+AGG + chr1_1:5555630-5555649 None:intergenic 30.0%
GTATCATTACATAAGATACG+TGG + chr1_1:5555682-5555701 None:intergenic 30.0%
AATGACCTAAAGTGAGATAA+AGG - chr1_1:5555711-5555730 Msa0003080:CDS 30.0%
ATGACCTAAAGTGAGATAAA+GGG - chr1_1:5555712-5555731 Msa0003080:CDS 30.0%
AATACCCTTTATCTCACTTT+AGG + chr1_1:5555719-5555738 None:intergenic 30.0%
GGTAACAAAAACTTGATCAT+AGG + chr1_1:5555873-5555892 None:intergenic 30.0%
! CATTTTCTGTTGAAGAAGAT+AGG + chr1_1:5556228-5556247 None:intergenic 30.0%
! GGTTTCAAAAGTATGGTAAT+TGG - chr1_1:5556578-5556597 Msa0003080:CDS 30.0%
CAGAAATTGTGACTCTTAAA+CGG - chr1_1:5556624-5556643 Msa0003080:CDS 30.0%
! CTTAAACGGAGTAATCATTT+TGG - chr1_1:5556638-5556657 Msa0003080:CDS 30.0%
AGCTAAAACCAAACAAGTGT+TGG + chr1_1:5553624-5553643 None:intergenic 35.0%
!!! ACACTTGTTTGGTTTTAGCT+AGG - chr1_1:5553624-5553643 Msa0003080:three_prime_UTR 35.0%
TAGCTAGGCCTCAATTAAAT+TGG - chr1_1:5553639-5553658 Msa0003080:three_prime_UTR 35.0%
!! AACTTGTTTTCCCTGTCTAT+AGG - chr1_1:5553869-5553888 Msa0003080:three_prime_UTR 35.0%
CAATGATGTTCCTATAGACA+GGG + chr1_1:5553882-5553901 None:intergenic 35.0%
AGAAATAAGCAAATGGAAGG+AGG + chr1_1:5553915-5553934 None:intergenic 35.0%
CCAAGAAATAAGCAAATGGA+AGG + chr1_1:5553918-5553937 None:intergenic 35.0%
! CCTTCCATTTGCTTATTTCT+TGG - chr1_1:5553915-5553934 Msa0003080:three_prime_UTR 35.0%
! CTTTTCCTTTTTGTTCAGGA+AGG - chr1_1:5554368-5554387 Msa0003080:intron 35.0%
TAAGTGCGAGAAAAAAGAAC+TGG + chr1_1:5554425-5554444 None:intergenic 35.0%
TACAGGATTACAGCAAATCA+AGG - chr1_1:5554656-5554675 Msa0003080:intron 35.0%
CCACTATTTAAGTGACTACT+TGG + chr1_1:5554990-5555009 None:intergenic 35.0%
CCAAGTAGTCACTTAAATAG+TGG - chr1_1:5554987-5555006 Msa0003080:CDS 35.0%
GTGATGCAAAGGGAAAAAAT+TGG - chr1_1:5555081-5555100 Msa0003080:intron 35.0%
AAGGGAAAAAATTGGACACT+TGG - chr1_1:5555089-5555108 Msa0003080:intron 35.0%
GAGTCCAAAGAAACATGTAT+AGG + chr1_1:5555213-5555232 None:intergenic 35.0%
!! GGTTTTTGAAAGAAATGCTC+AGG - chr1_1:5555256-5555275 Msa0003080:CDS 35.0%
! AGCTTTCACCATTTTATACG+CGG - chr1_1:5555304-5555323 Msa0003080:CDS 35.0%
CTAACTAACCGCGTATAAAA+TGG + chr1_1:5555315-5555334 None:intergenic 35.0%
! CAAATATGGTGCATTGATAG+AGG - chr1_1:5555449-5555468 Msa0003080:CDS 35.0%
GCTACAACAAAAGTTTGAAC+AGG + chr1_1:5555503-5555522 None:intergenic 35.0%
!! AACTTTTGTTGTAGCCATCA+TGG - chr1_1:5555508-5555527 Msa0003080:CDS 35.0%
TAAAGCAATAGAAGCCATGA+TGG + chr1_1:5555525-5555544 None:intergenic 35.0%
ATCATGGCTTCTATTGCTTT+AGG - chr1_1:5555524-5555543 Msa0003080:CDS 35.0%
TTTAGGAGAAGAGTTCTACT+TGG - chr1_1:5555541-5555560 Msa0003080:CDS 35.0%
TTAGGAGAAGAGTTCTACTT+GGG - chr1_1:5555542-5555561 Msa0003080:CDS 35.0%
TTATGTAATGATACCGCCTT+CGG - chr1_1:5555688-5555707 Msa0003080:CDS 35.0%
CTAAGTTCTCACCCTAAATT+AGG + chr1_1:5555894-5555913 None:intergenic 35.0%
TGGACTATACTTTGTGTTGT+GGG - chr1_1:5556090-5556109 Msa0003080:intron 35.0%
TCTGTTGAAGAAGATAGGAA+TGG + chr1_1:5556223-5556242 None:intergenic 35.0%
ATGGGAACATGTTGTAATAG+TGG - chr1_1:5556377-5556396 Msa0003080:intron 35.0%
!! ATAGTGGATGTCACTAAAAG+TGG - chr1_1:5556393-5556412 Msa0003080:intron 35.0%
! TAGTGGATGTCACTAAAAGT+GGG - chr1_1:5556394-5556413 Msa0003080:intron 35.0%
CATATGGGACTAATTTCACA+AGG + chr1_1:5556428-5556447 None:intergenic 35.0%
TAGTCATCATTATCATGACG+TGG - chr1_1:5556520-5556539 Msa0003080:CDS 35.0%
ATCATTATCATGACGTGGAA+GGG - chr1_1:5556525-5556544 Msa0003080:CDS 35.0%
!! AACGGAGTAATCATTTTGGT+CGG - chr1_1:5556642-5556661 Msa0003080:CDS 35.0%
! ATTTTTACCAGCATGCATCT+AGG + chr1_1:5556721-5556740 None:intergenic 35.0%
GATAGAACACCACATTCTCT+TGG + chr1_1:5553749-5553768 None:intergenic 40.0%
CATGCAGCTGAAATTTCTCA+GGG + chr1_1:5553771-5553790 None:intergenic 40.0%
ACATGCAGCTGAAATTTCTC+AGG + chr1_1:5553772-5553791 None:intergenic 40.0%
TGAGAAATTTCAGCTGCATG+TGG - chr1_1:5553771-5553790 Msa0003080:three_prime_UTR 40.0%
TTCAAGAGCTGCACTTAACA+TGG - chr1_1:5553837-5553856 Msa0003080:three_prime_UTR 40.0%
TCAAGAGCTGCACTTAACAT+GGG - chr1_1:5553838-5553857 Msa0003080:three_prime_UTR 40.0%
GCAATGATGTTCCTATAGAC+AGG + chr1_1:5553883-5553902 None:intergenic 40.0%
TCTGTCCTTCCTGAACAAAA+AGG + chr1_1:5554376-5554395 None:intergenic 40.0%
AGGTTTCTATTTGCTTGGGT+TGG - chr1_1:5554676-5554695 Msa0003080:intron 40.0%
TATTGCTGATGCAAAGGTAG+GGG + chr1_1:5554711-5554730 None:intergenic 40.0%
GTATTGCTGATGCAAAGGTA+GGG + chr1_1:5554712-5554731 None:intergenic 40.0%
TGTATTGCTGATGCAAAGGT+AGG + chr1_1:5554713-5554732 None:intergenic 40.0%
GTTCTGTATTGCTGATGCAA+AGG + chr1_1:5554717-5554736 None:intergenic 40.0%
CCATGAGAAATGTAATGGCA+GGG + chr1_1:5554745-5554764 None:intergenic 40.0%
GACTGCCATGAGAAATGTAA+TGG + chr1_1:5554750-5554769 None:intergenic 40.0%
TTCTCATGGCAGTCATACTA+AGG - chr1_1:5554756-5554775 Msa0003080:intron 40.0%
GTGAGACTGAATCGAAAAGA+TGG - chr1_1:5554882-5554901 Msa0003080:CDS 40.0%
GATGGAATTGCTAAAGTAGC+AGG - chr1_1:5554900-5554919 Msa0003080:CDS 40.0%
!!! GATTTTGGGACAATGTCACT+TGG - chr1_1:5555059-5555078 Msa0003080:intron 40.0%
!! AATGTCACTTGGTGATGCAA+AGG - chr1_1:5555070-5555089 Msa0003080:intron 40.0%
!! ATGTCACTTGGTGATGCAAA+GGG - chr1_1:5555071-5555090 Msa0003080:intron 40.0%
ATTGTTTGTCTTGGTCTGCT+TGG - chr1_1:5555132-5555151 Msa0003080:CDS 40.0%
TTGAAAGAAATGCTCAGGCT+TGG - chr1_1:5555261-5555280 Msa0003080:CDS 40.0%
GTTAGTTAGCCACGACTATT+AGG - chr1_1:5555326-5555345 Msa0003080:CDS 40.0%
!! TATTAATTTGCAGGGAGTGG+TGG - chr1_1:5555403-5555422 Msa0003080:CDS 40.0%
! ATATGGTGCATTGATAGAGG+AGG - chr1_1:5555452-5555471 Msa0003080:CDS 40.0%
TGATACACTGCAACAAACAC+TGG + chr1_1:5555479-5555498 None:intergenic 40.0%
CTGGACTATACTTTGTGTTG+TGG - chr1_1:5556089-5556108 Msa0003080:intron 40.0%
GGACTATACTTTGTGTTGTG+GGG - chr1_1:5556091-5556110 Msa0003080:intron 40.0%
CACACAAGCATGGTACTATA+AGG + chr1_1:5556281-5556300 None:intergenic 40.0%
TATCACAACACACACAAGCA+TGG + chr1_1:5556291-5556310 None:intergenic 40.0%
AGTGGATGTCACTAAAAGTG+GGG - chr1_1:5556395-5556414 Msa0003080:intron 40.0%
GACTAATTTCACAAGGCTCT+AGG + chr1_1:5556421-5556440 None:intergenic 40.0%
CATCATTATCATGACGTGGA+AGG - chr1_1:5556524-5556543 Msa0003080:CDS 40.0%
CTCAAGATTAGAATTGGGAG+TGG - chr1_1:5556557-5556576 Msa0003080:CDS 40.0%
TGGGAGTGGTTTCAAAAGTA+TGG - chr1_1:5556571-5556590 Msa0003080:CDS 40.0%
ATAATGACCTAGATGCATGC+TGG - chr1_1:5556711-5556730 Msa0003080:exon 40.0%
AGCAAAAGAAAGGTGGGAAG+TGG + chr1_1:5553595-5553614 None:intergenic 45.0%
CAGCTTCTTCCAAGAGAATG+TGG - chr1_1:5553737-5553756 Msa0003080:three_prime_UTR 45.0%
ACCAGCATAACCAAACTGCA+GGG + chr1_1:5553806-5553825 None:intergenic 45.0%
AACCAGCATAACCAAACTGC+AGG + chr1_1:5553807-5553826 None:intergenic 45.0%
GTGCAGCTCTTGAAACAACA+TGG + chr1_1:5553831-5553850 None:intergenic 45.0%
CGAGAAAAAAGAACTGGCAG+AGG + chr1_1:5554419-5554438 None:intergenic 45.0%
CCCTGCCATTACATTTCTCA+TGG - chr1_1:5554742-5554761 Msa0003080:intron 45.0%
GCCATGAGAAATGTAATGGC+AGG + chr1_1:5554746-5554765 None:intergenic 45.0%
AAGTGACAGAAAGACGAGCA+GGG + chr1_1:5555190-5555209 None:intergenic 45.0%
! CAGGCTTGGATTTTTCACTC+TGG - chr1_1:5555275-5555294 Msa0003080:CDS 45.0%
! GCTTGGATTTTTCACTCTGG+TGG - chr1_1:5555278-5555297 Msa0003080:CDS 45.0%
ACTTTAGGTCATTCCGAAGG+CGG + chr1_1:5555704-5555723 None:intergenic 45.0%
CTCACTTTAGGTCATTCCGA+AGG + chr1_1:5555707-5555726 None:intergenic 45.0%
!!! TAATTTTAACAATTAATATA+GGG + chr1_1:5554268-5554287 None:intergenic 5.0%
!!! ATAATTTTAACAATTAATAT+AGG + chr1_1:5554269-5554288 None:intergenic 5.0%
!!! GTTTTTTTTTTTTTTTTTTA+TGG - chr1_1:5556358-5556377 Msa0003080:intron 5.0%
! GCAGGGTACTTCTTAAGGAC+AGG + chr1_1:5555173-5555192 None:intergenic 50.0%
! GACGAGCAGGGTACTTCTTA+AGG + chr1_1:5555178-5555197 None:intergenic 50.0%
GAAGTGACAGAAAGACGAGC+AGG + chr1_1:5555191-5555210 None:intergenic 50.0%
GGAGAAGAGTTCTACTTGGG+CGG - chr1_1:5555545-5555564 Msa0003080:intron 50.0%
GAGAAGAGTTCTACTTGGGC+GGG - chr1_1:5555546-5555565 Msa0003080:intron 50.0%
!! GGTGCAGTGTTGATAGTAGC+TGG - chr1_1:5556070-5556089 Msa0003080:intron 50.0%
TGATGCTTTAGCGTGGCTTG+CGG + chr1_1:5556191-5556210 None:intergenic 50.0%
GAGTGAGTGATGCTTTAGCG+TGG + chr1_1:5556198-5556217 None:intergenic 50.0%
TCAGCTGCATGTGGCCATGT+TGG - chr1_1:5553780-5553799 Msa0003080:three_prime_UTR 55.0%
ACCAAACTGCAGGGCCAACA+TGG + chr1_1:5553797-5553816 None:intergenic 55.0%
GCCCTGCAGTTTGGTTATGC+TGG - chr1_1:5553802-5553821 Msa0003080:three_prime_UTR 55.0%
! GATGCTTTAGCGTGGCTTGC+GGG + chr1_1:5556190-5556209 None:intergenic 55.0%
GCCATGTTGGCCCTGCAGTT+TGG - chr1_1:5553793-5553812 Msa0003080:three_prime_UTR 60.0%
TTGCAGGGAGTGGTGGCATC+TGG - chr1_1:5555410-5555429 Msa0003080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5553591 5556843 5553591 ID=Msa0003080;Name=Msa0003080
chr1_1 mRNA 5553591 5556843 5553591 ID=Msa0003080-mRNA-1;Parent=Msa0003080;Name=Msa0003080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130|1|1|1|1|1|6|591|398
chr1_1 exon 5553591 5554371 5553591 ID=Msa0003080-mRNA-1:exon:1656;Parent=Msa0003080-mRNA-1
chr1_1 exon 5554867 5555018 5554867 ID=Msa0003080-mRNA-1:exon:1655;Parent=Msa0003080-mRNA-1
chr1_1 exon 5555109 5555562 5555109 ID=Msa0003080-mRNA-1:exon:1654;Parent=Msa0003080-mRNA-1
chr1_1 exon 5555657 5555773 5555657 ID=Msa0003080-mRNA-1:exon:1653;Parent=Msa0003080-mRNA-1
chr1_1 exon 5555986 5556048 5555986 ID=Msa0003080-mRNA-1:exon:1652;Parent=Msa0003080-mRNA-1
chr1_1 exon 5556493 5556843 5556493 ID=Msa0003080-mRNA-1:exon:1651;Parent=Msa0003080-mRNA-1
chr1_1 five_prime_UTR 5556714 5556843 5556714 ID=Msa0003080-mRNA-1:five_prime_utr;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5556493 5556713 5556493 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5555986 5556048 5555986 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5555657 5555773 5555657 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5555109 5555562 5555109 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5554867 5555018 5554867 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 CDS 5554182 5554371 5554182 ID=Msa0003080-mRNA-1:cds;Parent=Msa0003080-mRNA-1
chr1_1 three_prime_UTR 5553591 5554181 5553591 ID=Msa0003080-mRNA-1:three_prime_utr;Parent=Msa0003080-mRNA-1
Gene Sequence

>Msa0003080

ATGGCTGATTTAGGTTCAGCTTCTTCCAAGAGAATGTGGTGTTCTATCCCTGAGAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTATTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGATAGAGCAAGTGAGACTGAATCGAAAAGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCATCAGTGATTACATTATATCAAGGACCAACTATATATAGTCCAAGTAGTCACTTAAATAGTGGCACAAGCACAACAATAATAACAGAAGTAACAACAACAGTACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTACCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTCTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa0003080

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSSHLNSGTSTTIITEVTTTVPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*