Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111350 | KEH43043.1 | 85.106 | 423 | 5 | 3 | 1 | 365 | 1 | 423 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111350 | sp|Q6GP04|MON2_XENLA | 25.405 | 370 | 212 | 11 | 7 | 341 | 20 | 360 | 2.43e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111350 | A0A072VNP6 | 85.106 | 423 | 5 | 3 | 1 | 365 | 1 | 423 | 0.0 | 692 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042330 | Msa0111350 | 0.815866 | 7.421792e-52 | -8.615850e-47 |
| Msa0079680 | Msa0111350 | 0.885787 | 6.013531e-72 | -8.615850e-47 |
| Msa0111350 | Msa0179250 | 0.888057 | 8.272503e-73 | -8.615850e-47 |
| Msa0111350 | Msa0573100 | 0.819512 | 1.116977e-52 | -8.615850e-47 |
| Msa0111350 | Msa1256070 | 0.833241 | 5.970563e-56 | -8.615850e-47 |
| Msa0111350 | Msa1381100 | 0.803066 | 4.161779e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111350 | MtrunA17_Chr1g0191121 | 85.106 | 423 | 5 | 3 | 1 | 365 | 1 | 423 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111350 | AT5G27970.4 | 65.403 | 422 | 88 | 4 | 1 | 365 | 1 | 421 | 2.18e-163 | 497 |
| Msa0111350 | AT5G27970.5 | 65.403 | 422 | 88 | 4 | 1 | 365 | 1 | 421 | 2.76e-163 | 497 |
| Msa0111350 | AT5G27970.3 | 65.403 | 422 | 88 | 4 | 1 | 365 | 1 | 421 | 3.46e-163 | 497 |
| Msa0111350 | AT5G27970.1 | 63.448 | 435 | 88 | 5 | 1 | 365 | 1 | 434 | 7.44e-160 | 488 |
| Msa0111350 | AT5G27970.2 | 63.303 | 436 | 88 | 5 | 1 | 365 | 1 | 435 | 2.54e-159 | 487 |
Find 85 sgRNAs with CRISPR-Local
Find 711 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCCTGCCGGAAAATT+TGG | 0.176789 | 1_3:+25046301 | Msa0111350:CDS |
| ACCGTCAAGCTTAGCATTAT+TGG | 0.210215 | 1_3:+25042358 | Msa0111350:CDS |
| TTCTTCCGAGATGGCTTTCA+TGG | 0.277525 | 1_3:+25041315 | Msa0111350:exon |
| AGGGAGACGTTGACTGAAAC+TGG | 0.282780 | 1_3:+25046665 | Msa0111350:CDS |
| GTTCAGTTGCTCATATTATA+AGG | 0.290768 | 1_3:+25048783 | Msa0111350:CDS |
| TCTGAAAACAGCCACATAAT+TGG | 0.291696 | 1_3:-25048419 | None:intergenic |
| GAGAGCCTGGCAGCTGTTGC+AGG | 0.362404 | 1_3:+25051348 | Msa0111350:CDS |
| TGAACCTAGCTTTCGTCGTT+TGG | 0.366111 | 1_3:+25048754 | Msa0111350:CDS |
| AAGCTCTTGGCATCTGTCTC+AGG | 0.366670 | 1_3:+25045311 | Msa0111350:CDS |
| TACTATGTCAATCAGCTTGA+AGG | 0.369046 | 1_3:+25048722 | Msa0111350:intron |
| GATGGCTTTCATGGCGGTCT+TGG | 0.373561 | 1_3:+25041324 | Msa0111350:exon |
| TTGACTGAAACTGGGAAACT+TGG | 0.374695 | 1_3:+25046674 | Msa0111350:CDS |
| TTAGATCATGAATCTACATT+TGG | 0.381004 | 1_3:+25046626 | Msa0111350:CDS |
| TCCAATAATGCTAAGCTTGA+CGG | 0.396324 | 1_3:-25042359 | None:intergenic |
| TCACGGACTAATTCAGTTAC+TGG | 0.397698 | 1_3:+25046340 | Msa0111350:CDS |
| CCTGCCGGAAAATTTGGTTA+TGG | 0.411854 | 1_3:+25046307 | Msa0111350:CDS |
| ACCCTTGCAGCATGCTGAAA+TGG | 0.420618 | 1_3:+25042800 | Msa0111350:intron |
| TTACCTCACACTCGGTGATA+AGG | 0.422286 | 1_3:-25048820 | None:intergenic |
| AGAATCAAGTGAGGAGAGCC+TGG | 0.442370 | 1_3:+25051335 | Msa0111350:CDS |
| CTTCAGGCAAGCAGTTGCCT+TGG | 0.446856 | 1_3:+25046252 | Msa0111350:CDS |
| ACAAGAATACGATGCCATAA+TGG | 0.447176 | 1_3:-25049190 | None:intergenic |
| AATTATTGATATTGTTTGAA+GGG | 0.447451 | 1_3:-25042847 | None:intergenic |
| ACGAGTGAGGACTCTTCGTC+AGG | 0.447715 | 1_3:-25041293 | None:intergenic |
| ACTCAGACAAATTGATGCTT+CGG | 0.453817 | 1_3:-25046372 | None:intergenic |
| GTACTGCTGCAGCTACCTTC+AGG | 0.454405 | 1_3:+25046236 | Msa0111350:intron |
| CACCTGTTCGTAGGGTATCA+AGG | 0.462513 | 1_3:-25048443 | None:intergenic |
| TGGATAGCGACGTCGAGCTT+CGG | 0.466581 | 1_3:-25041371 | None:intergenic |
| AACCTTGATACCCTACGAAC+AGG | 0.468219 | 1_3:+25048441 | Msa0111350:CDS |
| GACTCACGTGTGGAAGAGTT+GGG | 0.477235 | 1_3:-25041170 | None:intergenic |
| TACCTCACACTCGGTGATAA+GGG | 0.478874 | 1_3:-25048819 | None:intergenic |
| CCTCGTAGCAGATGGAGAAA+TGG | 0.483236 | 1_3:-25042416 | None:intergenic |
| AAATTATTGATATTGTTTGA+AGG | 0.491958 | 1_3:-25042848 | None:intergenic |
| TGACTCACGTGTGGAAGAGT+TGG | 0.496657 | 1_3:-25041171 | None:intergenic |
| GATCATGAATCTACATTTGG+AGG | 0.501411 | 1_3:+25046629 | Msa0111350:CDS |
| ACATTCCTGCAACAGCTGCC+AGG | 0.509138 | 1_3:-25051353 | None:intergenic |
| GCATGCTGAAATGGCGGATG+AGG | 0.509939 | 1_3:+25042809 | Msa0111350:intron |
| AAGACCAAACGACGAAAGCT+AGG | 0.513907 | 1_3:-25048758 | None:intergenic |
| GATACTATGTCTCAAGCTCT+TGG | 0.514033 | 1_3:+25045298 | Msa0111350:CDS |
| CCTCACTCGTTCTTCCGAGA+TGG | 0.516562 | 1_3:+25041306 | Msa0111350:exon |
| GACCTGACATCTCTTGCTGC+AGG | 0.516993 | 1_3:+25046713 | Msa0111350:CDS |
| GCCGGAAAATTTGGTTATGG+AGG | 0.528093 | 1_3:+25046310 | Msa0111350:CDS |
| TTGGCTGAGTCTCTTCCTGC+CGG | 0.528559 | 1_3:+25046292 | Msa0111350:CDS |
| CACCTGCAGCAAGAGATGTC+AGG | 0.533425 | 1_3:-25046715 | None:intergenic |
| AACATATTCACCTGTTCGTA+GGG | 0.537624 | 1_3:-25048451 | None:intergenic |
| AATCAGCTTGAAGGAGAAGC+TGG | 0.538131 | 1_3:+25048731 | Msa0111350:intron |
| GTTATGGAGGGCAGCTCTCA+CGG | 0.541498 | 1_3:+25046323 | Msa0111350:CDS |
| TCATTATGCGCAATTTCACT+AGG | 0.544453 | 1_3:-25042295 | None:intergenic |
| CATTTCTCCATCTGCTACGA+GGG | 0.549206 | 1_3:+25042417 | Msa0111350:CDS |
| AAAATCTCCCTCGTAGCAGA+TGG | 0.552147 | 1_3:-25042424 | None:intergenic |
| GACCGCCATGAAAGCCATCT+CGG | 0.559440 | 1_3:-25041320 | None:intergenic |
| CCGGAAAATTTGGTTATGGA+GGG | 0.559658 | 1_3:+25046311 | Msa0111350:CDS |
| AAACATATTCACCTGTTCGT+AGG | 0.561337 | 1_3:-25048452 | None:intergenic |
| CAAGGCAACTGCTTGCCTGA+AGG | 0.575067 | 1_3:-25046251 | None:intergenic |
| CTGACATCTCTTGCTGCAGG+TGG | 0.578990 | 1_3:+25046716 | Msa0111350:CDS |
| TGACTGAAACTGGGAAACTT+GGG | 0.580583 | 1_3:+25046675 | Msa0111350:CDS |
| TTGGAGGGCCTCATGTGATG+AGG | 0.581357 | 1_3:+25046645 | Msa0111350:CDS |
| TCTGCACCGTCTTTAACAGC+TGG | 0.583208 | 1_3:-25041391 | None:intergenic |
| ATCATGAATCTACATTTGGA+GGG | 0.586031 | 1_3:+25046630 | Msa0111350:CDS |
| TTCCCTTATCACCGAGTGTG+AGG | 0.587692 | 1_3:+25048817 | Msa0111350:CDS |
| ACCACTCGGGGAAGGAAGTG+TGG | 0.589081 | 1_3:-25041245 | None:intergenic |
| TGCAGAGCATGCTATTCTCA+AGG | 0.595451 | 1_3:+25041408 | Msa0111350:CDS |
| GAGCTTCGGCGGAGAGAGCG+CGG | 0.598622 | 1_3:-25041357 | None:intergenic |
| GAGACTCAGCCAAAACCACT+TGG | 0.601853 | 1_3:-25046282 | None:intergenic |
| TTCCGAGATGGCTTTCATGG+CGG | 0.606867 | 1_3:+25041318 | Msa0111350:exon |
| TGGAGGGCCTCATGTGATGA+GGG | 0.611196 | 1_3:+25046646 | Msa0111350:CDS |
| CGAGTGAGGACTCTTCGTCA+GGG | 0.615332 | 1_3:-25041292 | None:intergenic |
| CGCTATCCAGCTGTTAAAGA+CGG | 0.615452 | 1_3:+25041385 | Msa0111350:CDS |
| TTCACTTCGTACTAATGCTG+AGG | 0.626424 | 1_3:+25048608 | Msa0111350:CDS |
| ATAGCGACGTCGAGCTTCGG+CGG | 0.632500 | 1_3:-25041368 | None:intergenic |
| CCATCTCGGAAGAACGAGTG+AGG | 0.647988 | 1_3:-25041306 | None:intergenic |
| CATGCTGAAATGGCGGATGA+GGG | 0.648303 | 1_3:+25042810 | Msa0111350:CDS |
| GGGAGACGTTGACTGAAACT+GGG | 0.651628 | 1_3:+25046666 | Msa0111350:CDS |
| CCATTTCTCCATCTGCTACG+AGG | 0.652938 | 1_3:+25042416 | Msa0111350:CDS |
| AACGTCTCCCTCATCACATG+AGG | 0.654111 | 1_3:-25046653 | None:intergenic |
| GCAACGCAGTGACTCACGTG+TGG | 0.658160 | 1_3:-25041180 | None:intergenic |
| ACACGTGAGTCACTGCGTTG+CGG | 0.662447 | 1_3:+25041182 | Msa0111350:five_prime_UTR |
| AACCACTTGGTCGAAAACCA+AGG | 0.666294 | 1_3:-25046269 | None:intergenic |
| ATGTTTAGTAGCAAAGCCAA+AGG | 0.666495 | 1_3:+25051372 | Msa0111350:CDS |
| ATGGAAGCTTACCTCACACT+CGG | 0.668208 | 1_3:-25048828 | None:intergenic |
| ACGATTACACCCTGAAAACG+AGG | 0.670953 | 1_3:+25042878 | Msa0111350:CDS |
| GTAGTTTCAAGAATCAAGTG+AGG | 0.672189 | 1_3:+25051326 | Msa0111350:intron |
| ACCACACTTCCTTCCCCGAG+TGG | 0.673714 | 1_3:+25041244 | Msa0111350:five_prime_UTR |
| CTTGCAGCATGCTGAAATGG+CGG | 0.690190 | 1_3:+25042803 | Msa0111350:intron |
| AAACTTGTCAGGCTTTACGA+CGG | 0.697818 | 1_3:+25048562 | Msa0111350:intron |
| CTTCGGCGGAGAGAGCGCGG+AGG | 0.758774 | 1_3:-25041354 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTTTTTTTTTTTTTTTAA+GGG | - | chr1_3:25041126-25041145 | None:intergenic | 10.0% |
| !!! | TTGCTTTTTTTTTTTTTTTA+AGG | - | chr1_3:25041127-25041146 | None:intergenic | 10.0% |
| !! | TATATAATAGTATATTAGTT+TGG | - | chr1_3:25044350-25044369 | None:intergenic | 10.0% |
| !!! | TTAATTTTTTTATACACTTA+GGG | + | chr1_3:25045038-25045057 | Msa0111350:intron | 10.0% |
| !! | ATAAAAAACTTACTATTTAA+AGG | - | chr1_3:25049450-25049469 | None:intergenic | 10.0% |
| !!! | ATATTTGAAAATAAAGTTTT+TGG | + | chr1_3:25051278-25051297 | Msa0111350:intron | 10.0% |
| !!! | TATTTAAGTTTATTCAAGTA+AGG | + | chr1_3:25042744-25042763 | Msa0111350:intron | 15.0% |
| !! | AATTATTGATATTGTTTGAA+GGG | - | chr1_3:25042850-25042869 | None:intergenic | 15.0% |
| !! | AAATTATTGATATTGTTTGA+AGG | - | chr1_3:25042851-25042870 | None:intergenic | 15.0% |
| !!! | ATTATTTTCAATTTTTTGGT+AGG | - | chr1_3:25043922-25043941 | None:intergenic | 15.0% |
| !!! | GTACATTATTTTCAATTTTT+TGG | - | chr1_3:25043926-25043945 | None:intergenic | 15.0% |
| !! | TAAAGTAGAATATATTGAAT+TGG | + | chr1_3:25044079-25044098 | Msa0111350:intron | 15.0% |
| !! | TAGTATTAATTAGAGATAAT+TGG | + | chr1_3:25044114-25044133 | Msa0111350:intron | 15.0% |
| !! | AAAATAAATAAGAACAGAAA+AGG | - | chr1_3:25044383-25044402 | None:intergenic | 15.0% |
| !! | ATTCAATATAATGCTTAAAT+TGG | - | chr1_3:25044917-25044936 | None:intergenic | 15.0% |
| !!! | AAATGACTGATTAAATTTTA+AGG | + | chr1_3:25045015-25045034 | Msa0111350:intron | 15.0% |
| !!! | GTTAATTTTTTTATACACTT+AGG | + | chr1_3:25045037-25045056 | Msa0111350:intron | 15.0% |
| !! | TGATTGTAACATTATATATA+TGG | - | chr1_3:25046163-25046182 | None:intergenic | 15.0% |
| !!! | TATTTTATTCATTCAATTAG+TGG | + | chr1_3:25046843-25046862 | Msa0111350:intron | 15.0% |
| !!! | AAATATTAGAATTTTACACT+GGG | - | chr1_3:25047148-25047167 | None:intergenic | 15.0% |
| !!! | AAAATATTAGAATTTTACAC+TGG | - | chr1_3:25047149-25047168 | None:intergenic | 15.0% |
| !! | AAAAAAAAATATGACTAGAT+TGG | - | chr1_3:25047465-25047484 | None:intergenic | 15.0% |
| !!! | CTAATCTTTTTAAATGATTT+TGG | + | chr1_3:25047564-25047583 | Msa0111350:intron | 15.0% |
| !! | ATTATACATACATATGAAAT+TGG | - | chr1_3:25047695-25047714 | None:intergenic | 15.0% |
| !! | TGTAAATTAACATTTGAATT+TGG | + | chr1_3:25047721-25047740 | Msa0111350:intron | 15.0% |
| !! | TCTATTTACACATAAAATTA+CGG | - | chr1_3:25048684-25048703 | None:intergenic | 15.0% |
| !! | TGCTATTAAAATATTTCAAA+GGG | - | chr1_3:25049084-25049103 | None:intergenic | 15.0% |
| !! | ATGCTATTAAAATATTTCAA+AGG | - | chr1_3:25049085-25049104 | None:intergenic | 15.0% |
| !!! | TAGTAAGTTTTTTATAGAAA+TGG | + | chr1_3:25049455-25049474 | Msa0111350:intron | 15.0% |
| !!! | CAATAAACATTTTCTTAATT+AGG | + | chr1_3:25049518-25049537 | Msa0111350:intron | 15.0% |
| !!! | ATATATACATGATTTCTTTT+TGG | + | chr1_3:25050502-25050521 | Msa0111350:intron | 15.0% |
| !!! | TATATACATGATTTCTTTTT+GGG | + | chr1_3:25050503-25050522 | Msa0111350:intron | 15.0% |
| !!! | ATATATACATGATTTCTTTT+TGG | + | chr1_3:25050502-25050521 | Msa0111350:intron | 15.0% |
| !!! | TATTTTCAAATATTGACAAA+AGG | - | chr1_3:25051271-25051290 | None:intergenic | 15.0% |
| !!! | AGTTTATGAACTGATTTTAA+TGG | + | chr1_3:25041533-25041552 | Msa0111350:intron | 20.0% |
| !! | TGATGATTGAATCAATATTT+AGG | + | chr1_3:25041676-25041695 | Msa0111350:intron | 20.0% |
| !! | TAAACTTAAATATCACATTC+CGG | - | chr1_3:25042736-25042755 | None:intergenic | 20.0% |
| !! | TTCTAAACTGTATTATATCT+TGG | + | chr1_3:25042943-25042962 | Msa0111350:intron | 20.0% |
| !!! | AAAAGTACTAGATCTAAATA+AGG | + | chr1_3:25043019-25043038 | Msa0111350:intron | 20.0% |
| !!! | GGACAATATTTTTTTACAAA+TGG | + | chr1_3:25044186-25044205 | Msa0111350:intron | 20.0% |
| !!! | TAAAAAACTCCTTTTTTCTT+TGG | - | chr1_3:25044472-25044491 | None:intergenic | 20.0% |
| !!! | AAAGAAAAAAGGAGTTTTTT+AGG | + | chr1_3:25044471-25044490 | Msa0111350:intron | 20.0% |
| !!! | TGTCATTTAAAAATAGGATA+AGG | - | chr1_3:25044616-25044635 | None:intergenic | 20.0% |
| !!! | CTATTTTTAAATGACATGTT+GGG | + | chr1_3:25044620-25044639 | Msa0111350:intron | 20.0% |
| !! | TATAATGCTTAAATTGGATT+AGG | - | chr1_3:25044911-25044930 | None:intergenic | 20.0% |
| !!! | GAATAGTAATTCACTATTTT+TGG | + | chr1_3:25044933-25044952 | Msa0111350:intron | 20.0% |
| !!! | CAGTCATTTTTTATATTGTT+AGG | - | chr1_3:25045004-25045023 | None:intergenic | 20.0% |
| !! | TCATTAATCACATAATGATT+TGG | - | chr1_3:25045119-25045138 | None:intergenic | 20.0% |
| !! | ATATAAAAAGACCTCTTATA+GGG | + | chr1_3:25045607-25045626 | Msa0111350:intron | 20.0% |
| !! | ACATAATAAAACATTCAGAT+TGG | - | chr1_3:25045703-25045722 | None:intergenic | 20.0% |
| !! | ATATCAAGTTTCAAATAATG+TGG | + | chr1_3:25045745-25045764 | Msa0111350:intron | 20.0% |
| !!! | TGATTTTTTTATTTGCATGA+AGG | + | chr1_3:25045862-25045881 | Msa0111350:intron | 20.0% |
| !!! | TATTTATCACTGATTTTGAT+TGG | - | chr1_3:25045946-25045965 | None:intergenic | 20.0% |
| !! | CAAGGTCAAATTTATAAAAT+GGG | - | chr1_3:25046023-25046042 | None:intergenic | 20.0% |
| !! | TCAAGGTCAAATTTATAAAA+TGG | - | chr1_3:25046024-25046043 | None:intergenic | 20.0% |
| !! | TGAATTCAGAATTATTATCA+AGG | - | chr1_3:25046041-25046060 | None:intergenic | 20.0% |
| !!! | AAAACGTTTAAATGCATTTT+TGG | - | chr1_3:25046510-25046529 | None:intergenic | 20.0% |
| !! | ATAAAATATGAGTGCTTAAA+CGG | - | chr1_3:25046831-25046850 | None:intergenic | 20.0% |
| !!! | TTCTTGAGTAAGAAATATTT+TGG | + | chr1_3:25046981-25047000 | Msa0111350:intron | 20.0% |
| !!! | TATTTTTTGATCAGATATTC+TGG | + | chr1_3:25047163-25047182 | Msa0111350:intron | 20.0% |
| !! | AAAATAAATAAACACTCCTT+TGG | - | chr1_3:25047302-25047321 | None:intergenic | 20.0% |
| !!! | ATTATGCATCATTTACTTTT+TGG | + | chr1_3:25047652-25047671 | Msa0111350:intron | 20.0% |
| !! | TAATGATAAACCATTATGAA+GGG | - | chr1_3:25047860-25047879 | None:intergenic | 20.0% |
| !! | ATAATGATAAACCATTATGA+AGG | - | chr1_3:25047861-25047880 | None:intergenic | 20.0% |
| !! | CATTAATTTCATTCCATTAA+TGG | + | chr1_3:25048021-25048040 | Msa0111350:intron | 20.0% |
| !! | CAATAAATTCTTACCATTAA+TGG | - | chr1_3:25048037-25048056 | None:intergenic | 20.0% |
| !! | CACTAATGGAAATTATATAT+TGG | - | chr1_3:25048107-25048126 | None:intergenic | 20.0% |
| !! | CAATATATAATTTCCATTAG+TGG | + | chr1_3:25048105-25048124 | Msa0111350:intron | 20.0% |
| !! | TTACAACTAAAATTAGATCT+CGG | - | chr1_3:25049016-25049035 | None:intergenic | 20.0% |
| !!! | TAACAAAAGCTTTTTATCTT+AGG | - | chr1_3:25049039-25049058 | None:intergenic | 20.0% |
| !! | CTATTAAAATATTTCAAAGG+GGG | - | chr1_3:25049082-25049101 | None:intergenic | 20.0% |
| !! | GCTATTAAAATATTTCAAAG+GGG | - | chr1_3:25049083-25049102 | None:intergenic | 20.0% |
| !! | ATTAATCTAACAACCAAAAA+TGG | + | chr1_3:25049298-25049317 | Msa0111350:intron | 20.0% |
| !! | GAACTTACATATCAAAATTA+TGG | - | chr1_3:25049372-25049391 | None:intergenic | 20.0% |
| !! | ATTAGAGTTTATAAACAGTA+AGG | + | chr1_3:25050210-25050229 | Msa0111350:intron | 20.0% |
| !! | AAAAATTAAAGAAACCAACT+AGG | - | chr1_3:25050843-25050862 | None:intergenic | 20.0% |
| !!! | CATTCATTTTCAATGTATTA+TGG | + | chr1_3:25051096-25051115 | Msa0111350:intron | 20.0% |
| !! | AAAATTGAATTGCATATATC+TGG | + | chr1_3:25051127-25051146 | Msa0111350:intron | 20.0% |
| ! | GAATTTATTATGTTAGATGC+AGG | + | chr1_3:25041877-25041896 | Msa0111350:intron | 25.0% |
| ! | GCTTGATTGAATTGAATTAT+AGG | + | chr1_3:25042045-25042064 | Msa0111350:intron | 25.0% |
| ! | TAAAGTAATGTAATGATGCT+TGG | + | chr1_3:25042076-25042095 | Msa0111350:intron | 25.0% |
| ! | TGCTTGGATCAATAATATTT+AGG | + | chr1_3:25042092-25042111 | Msa0111350:intron | 25.0% |
| ! | TGGATCAATAATATTTAGGA+AGG | + | chr1_3:25042096-25042115 | Msa0111350:intron | 25.0% |
| !! | CATATTACGAATCTTTTTGA+TGG | + | chr1_3:25042321-25042340 | Msa0111350:CDS | 25.0% |
| ! | AAACTAGTTAGATTGTGTAA+TGG | + | chr1_3:25042472-25042491 | Msa0111350:intron | 25.0% |
| ! | TCTCATGTATAAGAAAACAT+TGG | + | chr1_3:25042592-25042611 | Msa0111350:intron | 25.0% |
| !!! | TCAAATAGATTAGCTTTCTT+TGG | + | chr1_3:25042629-25042648 | Msa0111350:intron | 25.0% |
| ! | TCTCAAATATAAGCAAAACT+TGG | - | chr1_3:25042655-25042674 | None:intergenic | 25.0% |
| ! | TTAAGTTTATTCAAGTAAGG+AGG | + | chr1_3:25042747-25042766 | Msa0111350:intron | 25.0% |
| ! | TTAGAACAATCTTTCTTCTT+TGG | - | chr1_3:25043280-25043299 | None:intergenic | 25.0% |
| !!! | TTGTTCTAAAAATTCCATTG+AGG | + | chr1_3:25043291-25043310 | Msa0111350:intron | 25.0% |
| ! | ACTGTTAATGTCAAAAACAT+AGG | + | chr1_3:25043429-25043448 | Msa0111350:intron | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAA+TGG | - | chr1_3:25043981-25044000 | None:intergenic | 25.0% |
| ! | AGAATATATTGAATTGGAAG+TGG | + | chr1_3:25044085-25044104 | Msa0111350:intron | 25.0% |
| ! | ATGAATTGAGTCAATATTCT+TGG | + | chr1_3:25044164-25044183 | Msa0111350:intron | 25.0% |
| ! | TGAATTGAGTCAATATTCTT+GGG | + | chr1_3:25044165-25044184 | Msa0111350:intron | 25.0% |
| !!! | TACAAATGGCTTAGTTTTTA+TGG | + | chr1_3:25044200-25044219 | Msa0111350:intron | 25.0% |
| !!! | ACAAATGGCTTAGTTTTTAT+GGG | + | chr1_3:25044201-25044220 | Msa0111350:intron | 25.0% |
| !! | CCAACATGTCATTTAAAAAT+AGG | - | chr1_3:25044622-25044641 | None:intergenic | 25.0% |
| !!! | CCTATTTTTAAATGACATGT+TGG | + | chr1_3:25044619-25044638 | Msa0111350:intron | 25.0% |
| ! | AAAAAATCAGACACATGTAA+AGG | - | chr1_3:25045247-25045266 | None:intergenic | 25.0% |
| ! | CACTATATCTTGTTAATTTC+AGG | + | chr1_3:25045276-25045295 | Msa0111350:intron | 25.0% |
| ! | CTCTTAAGTGTATATACAAT+AGG | - | chr1_3:25045394-25045413 | None:intergenic | 25.0% |
| ! | CTATTGTATATACACTTAAG+AGG | + | chr1_3:25045392-25045411 | Msa0111350:intron | 25.0% |
| !! | AGGACTTTTTATGTGATAAT+AGG | + | chr1_3:25045412-25045431 | Msa0111350:intron | 25.0% |
| ! | CATATAAAAAGACCTCTTAT+AGG | + | chr1_3:25045606-25045625 | Msa0111350:intron | 25.0% |
| ! | TTGAAACTTGATATACATCA+TGG | - | chr1_3:25045739-25045758 | None:intergenic | 25.0% |
| ! | CTTATTTACCCATCAATAAA+AGG | + | chr1_3:25045891-25045910 | Msa0111350:intron | 25.0% |
| ! | TCAAAATCAGTGATAAATAG+TGG | + | chr1_3:25045947-25045966 | Msa0111350:intron | 25.0% |
| ! | ATAATTCTGAATTCAACAGT+CGG | + | chr1_3:25046046-25046065 | Msa0111350:intron | 25.0% |
| ! | ACATTATATATATGGTAGAC+AGG | - | chr1_3:25046155-25046174 | None:intergenic | 25.0% |
| ! | ATGAGAAAACACTATTAAAC+GGG | - | chr1_3:25046548-25046567 | None:intergenic | 25.0% |
| ! | CATGAGAAAACACTATTAAA+CGG | - | chr1_3:25046549-25046568 | None:intergenic | 25.0% |
| ! | TTAGATCATGAATCTACATT+TGG | + | chr1_3:25046626-25046645 | Msa0111350:CDS | 25.0% |
| ! | GACAAGAAATTTGAACAAAA+TGG | - | chr1_3:25046789-25046808 | None:intergenic | 25.0% |
| !!! | TTTTGCAGCTACTTTTTTAT+TGG | + | chr1_3:25047022-25047041 | Msa0111350:intron | 25.0% |
| ! | GTCTTATCTTTAATCTAAGT+GGG | - | chr1_3:25047059-25047078 | None:intergenic | 25.0% |
| ! | ATTTAAGCACAAGAAAACAA+TGG | - | chr1_3:25047217-25047236 | None:intergenic | 25.0% |
| ! | AGAATACTAATACTGATCAT+GGG | - | chr1_3:25047261-25047280 | None:intergenic | 25.0% |
| ! | AAGAATACTAATACTGATCA+TGG | - | chr1_3:25047262-25047281 | None:intergenic | 25.0% |
| ! | TAATCACAAGAAATATCCAA+AGG | + | chr1_3:25047283-25047302 | Msa0111350:intron | 25.0% |
| ! | TTCTTCTTTGGTTGAAAAAA+TGG | + | chr1_3:25047331-25047350 | Msa0111350:intron | 25.0% |
| ! | GTTAGAAAATACATCTTGAA+GGG | - | chr1_3:25047439-25047458 | None:intergenic | 25.0% |
| ! | AGTTAGAAAATACATCTTGA+AGG | - | chr1_3:25047440-25047459 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAAAAAGAGAG+AGG | + | chr1_3:25047483-25047502 | Msa0111350:intron | 25.0% |
| ! | CTTAATATAGATAATGTCTG+TGG | + | chr1_3:25047601-25047620 | Msa0111350:intron | 25.0% |
| ! | AGAGGTGAAAGTTAAATTAT+TGG | + | chr1_3:25047758-25047777 | Msa0111350:intron | 25.0% |
| ! | AATGATAAACCATTATGAAG+GGG | - | chr1_3:25047859-25047878 | None:intergenic | 25.0% |
| ! | TTATAGTCTACTAATGTATG+AGG | + | chr1_3:25047945-25047964 | Msa0111350:intron | 25.0% |
| ! | TTGTAAAACATACATGTCTA+TGG | - | chr1_3:25048246-25048265 | None:intergenic | 25.0% |
| !! | ACATGTATGTTTTACAAATC+AGG | + | chr1_3:25048249-25048268 | Msa0111350:intron | 25.0% |
| ! | AAACAAATTCAAAAGAACTG+TGG | - | chr1_3:25048278-25048297 | None:intergenic | 25.0% |
| ! | AATATCATCATCATACTACA+TGG | - | chr1_3:25048643-25048662 | None:intergenic | 25.0% |
| ! | AATTAAGTTACAGAAATGGT+CGG | + | chr1_3:25048881-25048900 | Msa0111350:intron | 25.0% |
| !! | AATATTTTCGATTTATGTGC+AGG | + | chr1_3:25049126-25049145 | Msa0111350:intron | 25.0% |
| ! | AGTTCAATATATATCTGTGT+AGG | + | chr1_3:25049387-25049406 | Msa0111350:intron | 25.0% |
| ! | GTTCAATATATATCTGTGTA+GGG | + | chr1_3:25049388-25049407 | Msa0111350:intron | 25.0% |
| ! | TATTACACACATACACATAT+GGG | - | chr1_3:25049575-25049594 | None:intergenic | 25.0% |
| ! | TTATTACACACATACACATA+TGG | - | chr1_3:25049576-25049595 | None:intergenic | 25.0% |
| ! | CTTGTTAAGAGTTTATAAAG+AGG | + | chr1_3:25050007-25050026 | Msa0111350:intron | 25.0% |
| ! | TCATACAACAAGAAATATGA+AGG | - | chr1_3:25050870-25050889 | None:intergenic | 25.0% |
| ! | TGTTGTATGATAGAAAACAT+AGG | + | chr1_3:25050880-25050899 | Msa0111350:intron | 25.0% |
| ! | TATCCATTAATTCTATCCAT+TGG | + | chr1_3:25050971-25050990 | Msa0111350:intron | 25.0% |
| ! | TGTTATGAGTTTTTACCACT+CGG | - | chr1_3:25041262-25041281 | None:intergenic | 30.0% |
| !! | TGCGATTGGATTTTTCAATT+CGG | + | chr1_3:25041486-25041505 | Msa0111350:intron | 30.0% |
| CATAAACTAGCCAAACATTT+CGG | - | chr1_3:25041521-25041540 | None:intergenic | 30.0% | |
| CATCACAATTATTGAAATGC+AGG | + | chr1_3:25041735-25041754 | Msa0111350:intron | 30.0% | |
| ! | CTTTTGTCCAAATTCATACA+CGG | + | chr1_3:25041934-25041953 | Msa0111350:intron | 30.0% |
| ATTTCTTCCGTGTATGAATT+TGG | - | chr1_3:25041944-25041963 | None:intergenic | 30.0% | |
| GAAAATTCATTGGAAACGTT+TGG | + | chr1_3:25042130-25042149 | Msa0111350:intron | 30.0% | |
| !!! | GCGTCATAGTGTTTATTTTT+TGG | + | chr1_3:25042538-25042557 | Msa0111350:intron | 30.0% |
| AAAACATTGGTCAAAGAAAG+TGG | + | chr1_3:25042605-25042624 | Msa0111350:intron | 30.0% | |
| AAACTGTATTATATCTTGGC+TGG | + | chr1_3:25042947-25042966 | Msa0111350:intron | 30.0% | |
| GACCATGTATTATTGTGATA+TGG | + | chr1_3:25043041-25043060 | Msa0111350:intron | 30.0% | |
| GTCCATATCACAATAATACA+TGG | - | chr1_3:25043046-25043065 | None:intergenic | 30.0% | |
| CAATGATGTACAAAAAACGT+AGG | + | chr1_3:25043123-25043142 | Msa0111350:intron | 30.0% | |
| ATTGAACAATGAAGATCTAG+AGG | + | chr1_3:25043183-25043202 | Msa0111350:intron | 30.0% | |
| ATTGAACAATGAAGATCTAG+AGG | + | chr1_3:25043183-25043202 | Msa0111350:intron | 30.0% | |
| ! | AATACAAAATCCTCCCATTT+TGG | + | chr1_3:25043550-25043569 | Msa0111350:intron | 30.0% |
| ! | ATACAAAATCCTCCCATTTT+GGG | + | chr1_3:25043551-25043570 | Msa0111350:intron | 30.0% |
| ATGAGAAATACAGAGGAAAA+TGG | - | chr1_3:25043730-25043749 | None:intergenic | 30.0% | |
| ! | TTGTTGCTTATATATGAGAC+TGG | + | chr1_3:25043815-25043834 | Msa0111350:intron | 30.0% |
| GGTAGGAAATTGATAGATTA+AGG | - | chr1_3:25043905-25043924 | None:intergenic | 30.0% | |
| AAATGAAAGAGAGAGAACAA+TGG | + | chr1_3:25044007-25044026 | Msa0111350:intron | 30.0% | |
| TGAGTGTCTTTGTCAAATAT+TGG | + | chr1_3:25044033-25044052 | Msa0111350:intron | 30.0% | |
| ! | AGGGAGTACAATCAAATTTA+AGG | + | chr1_3:25044228-25044247 | Msa0111350:intron | 30.0% |
| AAGAATGGTGATTACTTAGT+GGG | - | chr1_3:25044261-25044280 | None:intergenic | 30.0% | |
| AGACTCATCTACAGTAATAA+TGG | - | chr1_3:25044414-25044433 | None:intergenic | 30.0% | |
| TATTACTGTAGATGAGTCTA+TGG | + | chr1_3:25044415-25044434 | Msa0111350:intron | 30.0% | |
| AGTTAAAGCTGTTTAGCTAT+GGG | + | chr1_3:25044650-25044669 | Msa0111350:intron | 30.0% | |
| ATGGGTCTCATTAGAATTAT+TGG | + | chr1_3:25044668-25044687 | Msa0111350:intron | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr1_3:25044777-25044796 | Msa0111350:intron | 30.0% | |
| ATTTATCCTCCTTACAAAAC+CGG | - | chr1_3:25044824-25044843 | None:intergenic | 30.0% | |
| !! | AGTATTCATCTTAGCTCTAT+AGG | + | chr1_3:25044869-25044888 | Msa0111350:intron | 30.0% |
| ! | CTTAAATTGGATTAGGTGAA+AGG | - | chr1_3:25044904-25044923 | None:intergenic | 30.0% |
| !! | TTTTATACACTTAGGGCATT+TGG | + | chr1_3:25045045-25045064 | Msa0111350:intron | 30.0% |
| ! | TTTATACACTTAGGGCATTT+GGG | + | chr1_3:25045046-25045065 | Msa0111350:intron | 30.0% |
| ACTGATAAAAATGATACAGC+AGG | + | chr1_3:25045143-25045162 | Msa0111350:intron | 30.0% | |
| TCATATATAAAAAGACCGAC+TGG | + | chr1_3:25045216-25045235 | Msa0111350:intron | 30.0% | |
| ! | AAGAGGTCTTTTTATATGAG+TGG | - | chr1_3:25045604-25045623 | None:intergenic | 30.0% |
| TAATTCCTGAGTTTGATACT+CGG | - | chr1_3:25045648-25045667 | None:intergenic | 30.0% | |
| AAACTTGATATACATCATGG+TGG | - | chr1_3:25045736-25045755 | None:intergenic | 30.0% | |
| ATTTACCCATCAATAAAAGG+TGG | + | chr1_3:25045894-25045913 | Msa0111350:intron | 30.0% | |
| TTTACCCATCAATAAAAGGT+GGG | + | chr1_3:25045895-25045914 | Msa0111350:intron | 30.0% | |
| ! | AATCAGTGATAAATAGTGGA+AGG | + | chr1_3:25045951-25045970 | Msa0111350:intron | 30.0% |
| AGTTAATAACTTCATGTAGG+AGG | - | chr1_3:25046086-25046105 | None:intergenic | 30.0% | |
| TCCTACATGAAGTTATTAAC+TGG | + | chr1_3:25046085-25046104 | Msa0111350:intron | 30.0% | |
| ACCAGTTAATAACTTCATGT+AGG | - | chr1_3:25046089-25046108 | None:intergenic | 30.0% | |
| TCTGCAATTGCATTCAAAAA+GGG | - | chr1_3:25046406-25046425 | None:intergenic | 30.0% | |
| ATCTGCAATTGCATTCAAAA+AGG | - | chr1_3:25046407-25046426 | None:intergenic | 30.0% | |
| ATCATGAATCTACATTTGGA+GGG | + | chr1_3:25046630-25046649 | Msa0111350:CDS | 30.0% | |
| ACAAAATGGATATCATGCTA+GGG | - | chr1_3:25046775-25046794 | None:intergenic | 30.0% | |
| AACAAAATGGATATCATGCT+AGG | - | chr1_3:25046776-25046795 | None:intergenic | 30.0% | |
| TAATGTCATCAAGTAAGCAA+TGG | - | chr1_3:25046892-25046911 | None:intergenic | 30.0% | |
| AAATTGCCTGTATAATAGAC+AGG | - | chr1_3:25046919-25046938 | None:intergenic | 30.0% | |
| TGTCTATTATACAGGCAATT+TGG | + | chr1_3:25046918-25046937 | Msa0111350:intron | 30.0% | |
| ! | GGTCTTATCTTTAATCTAAG+TGG | - | chr1_3:25047060-25047079 | None:intergenic | 30.0% |
| ACTCATAATAAACTCTAGTC+AGG | - | chr1_3:25047081-25047100 | None:intergenic | 30.0% | |
| TGACTAGAGTTTATTATGAG+TGG | + | chr1_3:25047080-25047099 | Msa0111350:intron | 30.0% | |
| !!! | TGGTTTTGTAAGAATGTGTT+AGG | + | chr1_3:25047122-25047141 | Msa0111350:intron | 30.0% |
| TTTACCATGTCTTTCTTCTT+TGG | + | chr1_3:25047319-25047338 | Msa0111350:intron | 30.0% | |
| AATCAAAATGTGTTGCAAGA+TGG | + | chr1_3:25047391-25047410 | Msa0111350:intron | 30.0% | |
| AATATAATGTGATACCAACG+TGG | - | chr1_3:25047544-25047563 | None:intergenic | 30.0% | |
| !! | TGATTTTGGTCATTAGAATG+TGG | + | chr1_3:25047578-25047597 | Msa0111350:intron | 30.0% |
| ! | TAACATTTGAATTTGGTGAC+TGG | + | chr1_3:25047728-25047747 | Msa0111350:intron | 30.0% |
| ATGATAAACCATTATGAAGG+GGG | - | chr1_3:25047858-25047877 | None:intergenic | 30.0% | |
| ! | CACGAGAACATTTTCTATTA+GGG | - | chr1_3:25047909-25047928 | None:intergenic | 30.0% |
| ! | ACACGAGAACATTTTCTATT+AGG | - | chr1_3:25047910-25047929 | None:intergenic | 30.0% |
| ATGAGGCTGATTATATTCTT+TGG | + | chr1_3:25047962-25047981 | Msa0111350:intron | 30.0% | |
| TGAGGCTGATTATATTCTTT+GGG | + | chr1_3:25047963-25047982 | Msa0111350:intron | 30.0% | |
| ! | ATTCTTAACATGTGCCATTA+GGG | + | chr1_3:25048129-25048148 | Msa0111350:intron | 30.0% |
| !! | TCTTTTGAATTTGTTTCACC+AGG | + | chr1_3:25048282-25048301 | Msa0111350:intron | 30.0% |
| TTAAATAGAATTCACCATCC+TGG | - | chr1_3:25048303-25048322 | None:intergenic | 30.0% | |
| TCTTCGTGATAATATTCTGA+AGG | + | chr1_3:25048375-25048394 | Msa0111350:intron | 30.0% | |
| !!! | ATATTCTGAAGGTGTTTTAC+AGG | + | chr1_3:25048386-25048405 | Msa0111350:intron | 30.0% |
| ! | GTTCATTTTGTCCAATTATG+TGG | + | chr1_3:25048408-25048427 | Msa0111350:CDS | 30.0% |
| ATATTTGCACAAAACTTGTC+AGG | + | chr1_3:25048551-25048570 | Msa0111350:intron | 30.0% | |
| GTTCAGTTGCTCATATTATA+AGG | + | chr1_3:25048783-25048802 | Msa0111350:CDS | 30.0% | |
| CACCAATTAAGTTACAGAAA+TGG | + | chr1_3:25048877-25048896 | Msa0111350:intron | 30.0% | |
| GACCATTTCTGTAACTTAAT+TGG | - | chr1_3:25048882-25048901 | None:intergenic | 30.0% | |
| !!! | TGCAATTGTCTTTTTTTGTG+TGG | + | chr1_3:25048904-25048923 | Msa0111350:intron | 30.0% |
| !!! | GCAATTGTCTTTTTTTGTGT+GGG | + | chr1_3:25048905-25048924 | Msa0111350:intron | 30.0% |
| TTATACACTCTTAGAAGTCA+CGG | - | chr1_3:25048980-25048999 | None:intergenic | 30.0% | |
| ACTAAAATTAGATCTCGGTT+GGG | - | chr1_3:25049011-25049030 | None:intergenic | 30.0% | |
| AACTAAAATTAGATCTCGGT+TGG | - | chr1_3:25049012-25049031 | None:intergenic | 30.0% | |
| ! | TTTTCTCAGTATGTTACTGA+AGG | + | chr1_3:25049150-25049169 | Msa0111350:CDS | 30.0% |
| !!! | CTTTTCTTGATTTGCCATTA+TGG | + | chr1_3:25049176-25049195 | Msa0111350:CDS | 30.0% |
| ! | TTCTTGTTCTTGAGATTTTG+AGG | + | chr1_3:25049206-25049225 | Msa0111350:CDS | 30.0% |
| ! | TCTTGTTCTTGAGATTTTGA+GGG | + | chr1_3:25049207-25049226 | Msa0111350:CDS | 30.0% |
| AATCTAACAACCAAAAATGG+TGG | + | chr1_3:25049301-25049320 | Msa0111350:intron | 30.0% | |
| AAATGCTAATGAATGCCTTA+GGG | + | chr1_3:25049411-25049430 | Msa0111350:intron | 30.0% | |
| GTTTATTCTTGAAGCCTTTA+TGG | + | chr1_3:25049655-25049674 | Msa0111350:intron | 30.0% | |
| TTCCCAATATAACAAGTACT+GGG | - | chr1_3:25049758-25049777 | None:intergenic | 30.0% | |
| TTTCCCAATATAACAAGTAC+TGG | - | chr1_3:25049759-25049778 | None:intergenic | 30.0% | |
| CATTACAAAACCAGTTTGTA+AGG | - | chr1_3:25049845-25049864 | None:intergenic | 30.0% | |
| !!! | TGGTTTTGTAATGATGAGTT+AGG | + | chr1_3:25049852-25049871 | Msa0111350:intron | 30.0% |
| TCAGATACCATGTTGAAATT+GGG | - | chr1_3:25049878-25049897 | None:intergenic | 30.0% | |
| AAAAAACTCAAGTCTCACAT+TGG | + | chr1_3:25049972-25049991 | Msa0111350:intron | 30.0% | |
| ! | TCTGAAACCATGTTGAAATT+GGG | - | chr1_3:25050278-25050297 | None:intergenic | 30.0% |
| TGTAGCACATTGTTGAAATT+GGG | - | chr1_3:25050480-25050499 | None:intergenic | 30.0% | |
| ! | TCTGAAACCATGTTGAAATT+GGG | - | chr1_3:25050278-25050297 | None:intergenic | 30.0% |
| TGTAGCACATTGTTGAAATT+GGG | - | chr1_3:25050480-25050499 | None:intergenic | 30.0% | |
| AGCTTCTTCAAAATATGCAT+CGG | - | chr1_3:25050790-25050809 | None:intergenic | 30.0% | |
| ! | CATTAGATATTTTTCACGAC+AGG | + | chr1_3:25050941-25050960 | Msa0111350:intron | 30.0% |
| ATGCCAATGGATAGAATTAA+TGG | - | chr1_3:25050977-25050996 | None:intergenic | 30.0% | |
| ! | TTATGAGTTTTTACCACTCG+GGG | - | chr1_3:25041260-25041279 | None:intergenic | 35.0% |
| ! | GTTATGAGTTTTTACCACTC+GGG | - | chr1_3:25041261-25041280 | None:intergenic | 35.0% |
| AAATTCTTCTGCATTGCGAT+TGG | + | chr1_3:25041472-25041491 | Msa0111350:intron | 35.0% | |
| GTGCGAATGAATTCAATTCT+AGG | + | chr1_3:25041635-25041654 | Msa0111350:intron | 35.0% | |
| ATTTAGGAAACTGTCAGTGA+CGG | + | chr1_3:25041692-25041711 | Msa0111350:intron | 35.0% | |
| TGATGCCTGGATCAATATTT+AGG | + | chr1_3:25041811-25041830 | Msa0111350:intron | 35.0% | |
| GATGCCTGGATCAATATTTA+GGG | + | chr1_3:25041812-25041831 | Msa0111350:intron | 35.0% | |
| ACTTCCCTAAATATTGATCC+AGG | - | chr1_3:25041819-25041838 | None:intergenic | 35.0% | |
| ! | GAAGTGTTTGTGAATTGTGA+CGG | + | chr1_3:25041834-25041853 | Msa0111350:intron | 35.0% |
| GCTAGTGACAGAAAATTCAT+TGG | + | chr1_3:25042120-25042139 | Msa0111350:intron | 35.0% | |
| TCATTATGCGCAATTTCACT+AGG | - | chr1_3:25042298-25042317 | None:intergenic | 35.0% | |
| !! | AATCTTTTTGATGGCATGTG+AGG | + | chr1_3:25042330-25042349 | Msa0111350:CDS | 35.0% |
| TCCAATAATGCTAAGCTTGA+CGG | - | chr1_3:25042362-25042381 | None:intergenic | 35.0% | |
| AATCGATATGGCCAAAAGTA+AGG | - | chr1_3:25042518-25042537 | None:intergenic | 35.0% | |
| AATAGCAATCAAGCATAGCA+AGG | - | chr1_3:25042564-25042583 | None:intergenic | 35.0% | |
| TTCTTATACATGAGACCAGA+TGG | - | chr1_3:25042587-25042606 | None:intergenic | 35.0% | |
| ! | TTGCTTATATTTGAGACCAG+AGG | + | chr1_3:25042659-25042678 | Msa0111350:intron | 35.0% |
| ! | TGCTTATATTTGAGACCAGA+GGG | + | chr1_3:25042660-25042679 | Msa0111350:intron | 35.0% |
| ATGGCTGAGTTCAATTATAG+AGG | + | chr1_3:25042697-25042716 | Msa0111350:intron | 35.0% | |
| ! | TGAAACTAACCTCGTTTTCA+GGG | - | chr1_3:25042890-25042909 | None:intergenic | 35.0% |
| ! | TTGAAACTAACCTCGTTTTC+AGG | - | chr1_3:25042891-25042910 | None:intergenic | 35.0% |
| ATCTTACCTACTACATTCCA+GGG | - | chr1_3:25042973-25042992 | None:intergenic | 35.0% | |
| TATCTTACCTACTACATTCC+AGG | - | chr1_3:25042974-25042993 | None:intergenic | 35.0% | |
| ! | CTGAATTCGACAATTTTACG+TGG | + | chr1_3:25043087-25043106 | Msa0111350:intron | 35.0% |
| AAGATCTAGAGGACTTTGAA+AGG | + | chr1_3:25043194-25043213 | Msa0111350:intron | 35.0% | |
| ! | AGATCTAGAGGACTTTGAAA+GGG | + | chr1_3:25043195-25043214 | Msa0111350:intron | 35.0% |
| AAAATCCTCCCAATTCTCAT+TGG | + | chr1_3:25043252-25043271 | Msa0111350:intron | 35.0% | |
| AAATCCTCCCAATTCTCATT+GGG | + | chr1_3:25043253-25043272 | Msa0111350:intron | 35.0% | |
| AAGATCTAGAGGACTTTGAA+AGG | + | chr1_3:25043194-25043213 | Msa0111350:intron | 35.0% | |
| ! | AGATCTAGAGGACTTTGAAA+GGG | + | chr1_3:25043195-25043214 | Msa0111350:intron | 35.0% |
| ! | TACAAAATCCTCCCATTTTG+GGG | + | chr1_3:25043552-25043571 | Msa0111350:intron | 35.0% |
| ! | AATTTGAGTTCCCCCAAAAT+GGG | - | chr1_3:25043566-25043585 | None:intergenic | 35.0% |
| AACTCAAATTGTATTGGAGG+AGG | + | chr1_3:25043576-25043595 | Msa0111350:intron | 35.0% | |
| ACTCAAATTGTATTGGAGGA+GGG | + | chr1_3:25043577-25043596 | Msa0111350:intron | 35.0% | |
| TTTGGAGATGAGAAATACAG+AGG | - | chr1_3:25043737-25043756 | None:intergenic | 35.0% | |
| GAAATAATTCATGCCCCTTA+AGG | - | chr1_3:25043794-25043813 | None:intergenic | 35.0% | |
| TTGCTTATATATGAGACTGG+AGG | + | chr1_3:25043818-25043837 | Msa0111350:intron | 35.0% | |
| TGCTTATATATGAGACTGGA+GGG | + | chr1_3:25043819-25043838 | Msa0111350:intron | 35.0% | |
| ! | TCAACTGGCTCAATTAAACT+GGG | - | chr1_3:25043958-25043977 | None:intergenic | 35.0% |
| !! | ATGGCTTAGTTTTTATGGGA+CGG | + | chr1_3:25044205-25044224 | Msa0111350:intron | 35.0% |
| CAAGAATGGTGATTACTTAG+TGG | - | chr1_3:25044262-25044281 | None:intergenic | 35.0% | |
| CCTTCTACAGTATTCAAGAA+TGG | - | chr1_3:25044276-25044295 | None:intergenic | 35.0% | |
| CCATTCTTGAATACTGTAGA+AGG | + | chr1_3:25044273-25044292 | Msa0111350:intron | 35.0% | |
| TGTGTCGAACCAAAGAAAAA+AGG | + | chr1_3:25044460-25044479 | Msa0111350:intron | 35.0% | |
| AAGGTTGAATCTATGAAGCA+CGG | - | chr1_3:25044597-25044616 | None:intergenic | 35.0% | |
| GAGTTAAAGCTGTTTAGCTA+TGG | + | chr1_3:25044649-25044668 | Msa0111350:intron | 35.0% | |
| ATTGGTTAAGTCAATACGCA+CGG | + | chr1_3:25044686-25044705 | Msa0111350:intron | 35.0% | |
| TTGCTTATAACAGTGATCAG+AGG | - | chr1_3:25044734-25044753 | None:intergenic | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr1_3:25044780-25044799 | Msa0111350:intron | 35.0% | |
| ! | TTGGATTAGGTGAAAGGTAT+GGG | - | chr1_3:25044898-25044917 | None:intergenic | 35.0% |
| ! | ATTGGATTAGGTGAAAGGTA+TGG | - | chr1_3:25044899-25044918 | None:intergenic | 35.0% |
| TAATACAACATCCAGCCAAA+TGG | + | chr1_3:25045093-25045112 | Msa0111350:intron | 35.0% | |
| ! | CACATAATGATTTGGCCATT+TGG | - | chr1_3:25045111-25045130 | None:intergenic | 35.0% |
| AATATTATGCAGTCCACGTT+TGG | + | chr1_3:25045177-25045196 | Msa0111350:intron | 35.0% | |
| CATTGAAATTGAACCAAACG+TGG | - | chr1_3:25045193-25045212 | None:intergenic | 35.0% | |
| ACATAATCATACATGGTCCA+AGG | - | chr1_3:25045563-25045582 | None:intergenic | 35.0% | |
| CTTGGTCACATAATCATACA+TGG | - | chr1_3:25045570-25045589 | None:intergenic | 35.0% | |
| ! | GGTCTTTTTATATGAGTGGA+AGG | - | chr1_3:25045600-25045619 | None:intergenic | 35.0% |
| TTTGATTCAGTCCCTATAAG+AGG | - | chr1_3:25045621-25045640 | None:intergenic | 35.0% | |
| ! | TCTACCCACCTTTTATTGAT+GGG | - | chr1_3:25045902-25045921 | None:intergenic | 35.0% |
| !! | GGCAAATGACTGATTTTGAT+TGG | + | chr1_3:25045972-25045991 | Msa0111350:intron | 35.0% |
| ACCTGATGACTGTTATTGTT+TGG | + | chr1_3:25046128-25046147 | Msa0111350:intron | 35.0% | |
| ACCAAACAATAACAGTCATC+AGG | - | chr1_3:25046132-25046151 | None:intergenic | 35.0% | |
| CTGCAATTGCATTCAAAAAG+GGG | - | chr1_3:25046405-25046424 | None:intergenic | 35.0% | |
| CATGAAAATGAAACCCATGA+AGG | - | chr1_3:25046437-25046456 | None:intergenic | 35.0% | |
| CTGTCAGCACATTACAATAA+GGG | + | chr1_3:25046482-25046501 | Msa0111350:intron | 35.0% | |
| GATCATGAATCTACATTTGG+AGG | + | chr1_3:25046629-25046648 | Msa0111350:CDS | 35.0% | |
| TGGATCTGTATGTGCTTATT+TGG | + | chr1_3:25046736-25046755 | Msa0111350:intron | 35.0% | |
| AAAATGGATATCATGCTAGG+GGG | - | chr1_3:25046773-25046792 | None:intergenic | 35.0% | |
| CAAAATGGATATCATGCTAG+GGG | - | chr1_3:25046774-25046793 | None:intergenic | 35.0% | |
| TAGCTTCCTGTCTATTATAC+AGG | + | chr1_3:25046910-25046929 | Msa0111350:intron | 35.0% | |
| TCTTTAATCTAAGTGGGACT+TGG | - | chr1_3:25047053-25047072 | None:intergenic | 35.0% | |
| TCTTACAAAACCAGCTTGTA+GGG | - | chr1_3:25047115-25047134 | None:intergenic | 35.0% | |
| TTCTTACAAAACCAGCTTGT+AGG | - | chr1_3:25047116-25047135 | None:intergenic | 35.0% | |
| TAATACTGATCATGGGTTCA+TGG | - | chr1_3:25047254-25047273 | None:intergenic | 35.0% | |
| TCAACCAAAGAAGAAAGACA+TGG | - | chr1_3:25047326-25047345 | None:intergenic | 35.0% | |
| TGATAAACCATTATGAAGGG+GGG | - | chr1_3:25047857-25047876 | None:intergenic | 35.0% | |
| AGGGAATTAATATCTGCATG+AGG | - | chr1_3:25047890-25047909 | None:intergenic | 35.0% | |
| CATGTTAAGAATGCCACTAA+TGG | - | chr1_3:25048121-25048140 | None:intergenic | 35.0% | |
| ! | CATTCTTAACATGTGCCATT+AGG | + | chr1_3:25048128-25048147 | Msa0111350:intron | 35.0% |
| !! | AATGTTAACTTGTGCCCTAA+TGG | - | chr1_3:25048146-25048165 | None:intergenic | 35.0% |
| ! | TTGAATTTGTTTCACCAGGA+TGG | + | chr1_3:25048286-25048305 | Msa0111350:intron | 35.0% |
| TCTGAAAACAGCCACATAAT+TGG | - | chr1_3:25048422-25048441 | None:intergenic | 35.0% | |
| AACATATTCACCTGTTCGTA+GGG | - | chr1_3:25048454-25048473 | None:intergenic | 35.0% | |
| AAACATATTCACCTGTTCGT+AGG | - | chr1_3:25048455-25048474 | None:intergenic | 35.0% | |
| TCATCATACTACATGGTTCA+GGG | - | chr1_3:25048636-25048655 | None:intergenic | 35.0% | |
| ATCATCATACTACATGGTTC+AGG | - | chr1_3:25048637-25048656 | None:intergenic | 35.0% | |
| TACTATGTCAATCAGCTTGA+AGG | + | chr1_3:25048722-25048741 | Msa0111350:intron | 35.0% | |
| TGGCAAGATGAAAAACGAAA+TGG | - | chr1_3:25048850-25048869 | None:intergenic | 35.0% | |
| CTAAAATTAGATCTCGGTTG+GGG | - | chr1_3:25049010-25049029 | None:intergenic | 35.0% | |
| ACAAGAATACGATGCCATAA+TGG | - | chr1_3:25049193-25049212 | None:intergenic | 35.0% | |
| GAAATGCTAATGAATGCCTT+AGG | + | chr1_3:25049410-25049429 | Msa0111350:intron | 35.0% | |
| ATATGGGTCTTGCTAACTTA+GGG | - | chr1_3:25049559-25049578 | None:intergenic | 35.0% | |
| ATGCAGGTTATGCAATTCTT+TGG | + | chr1_3:25049682-25049701 | Msa0111350:intron | 35.0% | |
| ! | TCCCAATATAACAAGTACTG+GGG | - | chr1_3:25049757-25049776 | None:intergenic | 35.0% |
| TCAAGAGTTCTATCCAATGT+GGG | - | chr1_3:25049791-25049810 | None:intergenic | 35.0% | |
| ATCAAGAGTTCTATCCAATG+TGG | - | chr1_3:25049792-25049811 | None:intergenic | 35.0% | |
| CTCAGATACCATGTTGAAAT+TGG | - | chr1_3:25049879-25049898 | None:intergenic | 35.0% | |
| AAGTCTCACATTGGATTGAT+AGG | + | chr1_3:25049981-25050000 | Msa0111350:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1_3:25050054-25050073 | None:intergenic | 35.0% | |
| GAGTTCTATCTATCCAATGT+GGG | - | chr1_3:25050187-25050206 | None:intergenic | 35.0% | |
| AGAGTTCTATCTATCCAATG+TGG | - | chr1_3:25050188-25050207 | None:intergenic | 35.0% | |
| !! | CTCTGAAACCATGTTGAAAT+TGG | - | chr1_3:25050279-25050298 | None:intergenic | 35.0% |
| TTGGTGCATGTATAAATGGT+GGG | - | chr1_3:25050319-25050338 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | + | chr1_3:25050454-25050473 | Msa0111350:intron | 35.0% |
| CTGTAGCACATTGTTGAAAT+TGG | - | chr1_3:25050481-25050500 | None:intergenic | 35.0% | |
| GGAAAAACCCAATTTCAACA+TGG | + | chr1_3:25050524-25050543 | Msa0111350:intron | 35.0% | |
| !! | CTCTGAAACCATGTTGAAAT+TGG | - | chr1_3:25050279-25050298 | None:intergenic | 35.0% |
| TTGGTGCATGTATAAATGGT+GGG | - | chr1_3:25050319-25050338 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | + | chr1_3:25050454-25050473 | Msa0111350:intron | 35.0% |
| CTGTAGCACATTGTTGAAAT+TGG | - | chr1_3:25050481-25050500 | None:intergenic | 35.0% | |
| TTTCTGATAAGCAGAGAGAT+CGG | + | chr1_3:25050813-25050832 | Msa0111350:intron | 35.0% | |
| ACATAGGCCAACAATTTAGA+AGG | + | chr1_3:25050896-25050915 | Msa0111350:intron | 35.0% | |
| ATTCTATCCATTGGCATTGT+AGG | + | chr1_3:25050980-25050999 | Msa0111350:intron | 35.0% | |
| CCACAACATTTGTGTTCTTA+GGG | - | chr1_3:25051008-25051027 | None:intergenic | 35.0% | |
| TCCACAACATTTGTGTTCTT+AGG | - | chr1_3:25051009-25051028 | None:intergenic | 35.0% | |
| TAAGAACACAAATGTTGTGG+AGG | + | chr1_3:25051008-25051027 | Msa0111350:intron | 35.0% | |
| AAGAACACAAATGTTGTGGA+GGG | + | chr1_3:25051009-25051028 | Msa0111350:intron | 35.0% | |
| TAAAGTCAGCTGAAGAAAGT+AGG | - | chr1_3:25051172-25051191 | None:intergenic | 35.0% | |
| GTAGTTTCAAGAATCAAGTG+AGG | + | chr1_3:25051326-25051345 | Msa0111350:intron | 35.0% | |
| GAACTATGTGCCGAAATGTT+TGG | + | chr1_3:25041508-25041527 | Msa0111350:intron | 40.0% | |
| GTCAATTGTTGAATGATGCC+TGG | + | chr1_3:25041798-25041817 | Msa0111350:intron | 40.0% | |
| ! | AGATGCAGGAAGTGTGATAT+TGG | + | chr1_3:25041891-25041910 | Msa0111350:intron | 40.0% |
| ACCGTCAAGCTTAGCATTAT+TGG | + | chr1_3:25042358-25042377 | Msa0111350:CDS | 40.0% | |
| !!! | TGGTTTTGAAATTTGCACCG+TGG | + | chr1_3:25042492-25042511 | Msa0111350:intron | 40.0% |
| ACACTATGACGCAATCGATA+TGG | - | chr1_3:25042530-25042549 | None:intergenic | 40.0% | |
| ! | TGCTTGATTGCTATTCCATC+TGG | + | chr1_3:25042569-25042588 | Msa0111350:intron | 40.0% |
| ! | GCTTATATTTGAGACCAGAG+GGG | + | chr1_3:25042661-25042680 | Msa0111350:intron | 40.0% |
| ! | CTTATATTTGAGACCAGAGG+GGG | + | chr1_3:25042662-25042681 | Msa0111350:intron | 40.0% |
| TAGAGGATTTATGCAAGAGC+CGG | + | chr1_3:25042714-25042733 | Msa0111350:intron | 40.0% | |
| ! | TAGAGGACTTTGAAAGGGAA+AGG | + | chr1_3:25043200-25043219 | Msa0111350:intron | 40.0% |
| ! | ACTTTGAAAGGGAAAGGCTT+TGG | + | chr1_3:25043206-25043225 | Msa0111350:intron | 40.0% |
| CTTTGGACCCAATGAGAATT+GGG | - | chr1_3:25043263-25043282 | None:intergenic | 40.0% | |
| TCTTTGGACCCAATGAGAAT+TGG | - | chr1_3:25043264-25043283 | None:intergenic | 40.0% | |
| GATAACAGACAAAAACGACG+TGG | - | chr1_3:25043323-25043342 | None:intergenic | 40.0% | |
| CTGTTATCTGCTCGTATTTG+CGG | + | chr1_3:25043335-25043354 | Msa0111350:intron | 40.0% | |
| ! | ACTTTGAAAGGGAAGGCTTT+GGG | + | chr1_3:25043510-25043529 | Msa0111350:intron | 40.0% |
| ! | ACAAAATCCTCCCATTTTGG+GGG | + | chr1_3:25043553-25043572 | Msa0111350:intron | 40.0% |
| ! | CAATTTGAGTTCCCCCAAAA+TGG | - | chr1_3:25043567-25043586 | None:intergenic | 40.0% |
| TGGGGGAACTCAAATTGTAT+TGG | + | chr1_3:25043570-25043589 | Msa0111350:intron | 40.0% | |
| GGGAACTCAAATTGTATTGG+AGG | + | chr1_3:25043573-25043592 | Msa0111350:intron | 40.0% | |
| !!! | CCTTGTTTAGGAGTTTTGAG+GGG | - | chr1_3:25043771-25043790 | None:intergenic | 40.0% |
| !!! | GCCTTGTTTAGGAGTTTTGA+GGG | - | chr1_3:25043772-25043791 | None:intergenic | 40.0% |
| AACTCCTAAACAAGGCCTTA+AGG | + | chr1_3:25043776-25043795 | Msa0111350:intron | 40.0% | |
| ACTCCTAAACAAGGCCTTAA+GGG | + | chr1_3:25043777-25043796 | Msa0111350:intron | 40.0% | |
| CTCAATTAAACTGGGATGGA+GGG | - | chr1_3:25043950-25043969 | None:intergenic | 40.0% | |
| ! | GTCAACTGGCTCAATTAAAC+TGG | - | chr1_3:25043959-25043978 | None:intergenic | 40.0% |
| ATCTGTGTGAAATGGTCAAC+TGG | - | chr1_3:25043973-25043992 | None:intergenic | 40.0% | |
| !! | CTTAGTTTTTATGGGACGGA+GGG | + | chr1_3:25044209-25044228 | Msa0111350:intron | 40.0% |
| !! | ACAAGTGTCGGATAACTCAA+AGG | - | chr1_3:25044502-25044521 | None:intergenic | 40.0% |
| GTATAGTTATGTACTCCCTC+TGG | + | chr1_3:25044708-25044727 | Msa0111350:intron | 40.0% | |
| TGGCTGGATGTTGTATTACA+TGG | - | chr1_3:25045091-25045110 | None:intergenic | 40.0% | |
| ! | TAATGATTTGGCCATTTGGC+TGG | - | chr1_3:25045107-25045126 | None:intergenic | 40.0% |
| CATGTAAAGGTGATTCCAGT+CGG | - | chr1_3:25045234-25045253 | None:intergenic | 40.0% | |
| GATACTATGTCTCAAGCTCT+TGG | + | chr1_3:25045298-25045317 | Msa0111350:CDS | 40.0% | |
| !! | GTGTGACTTTTTAAGCAGTC+AGG | + | chr1_3:25045527-25045546 | Msa0111350:intron | 40.0% |
| AATCATACATGGTCCAAGGT+TGG | - | chr1_3:25045559-25045578 | None:intergenic | 40.0% | |
| TGAGTGGAAGGAATAGATCT+TGG | - | chr1_3:25045588-25045607 | None:intergenic | 40.0% | |
| ATACACCGAGTATCAAACTC+AGG | + | chr1_3:25045640-25045659 | Msa0111350:intron | 40.0% | |
| ! | CTCTACCCACCTTTTATTGA+TGG | - | chr1_3:25045903-25045922 | None:intergenic | 40.0% |
| TAGAGTTACTCATGCTGAGT+TGG | + | chr1_3:25045918-25045937 | Msa0111350:intron | 40.0% | |
| TAGAGTTACCCATGTTGAGT+TGG | - | chr1_3:25046000-25046019 | None:intergenic | 40.0% | |
| TCTGAATTCAACAGTCGGTT+TGG | + | chr1_3:25046051-25046070 | Msa0111350:intron | 40.0% | |
| ! | CCCTCCATAACCAAATTTTC+CGG | - | chr1_3:25046314-25046333 | None:intergenic | 40.0% |
| CCGGAAAATTTGGTTATGGA+GGG | + | chr1_3:25046311-25046330 | Msa0111350:CDS | 40.0% | |
| ! | TCACGGACTAATTCAGTTAC+TGG | + | chr1_3:25046340-25046359 | Msa0111350:CDS | 40.0% |
| TGCAGATCACTATTCCTTCA+TGG | + | chr1_3:25046420-25046439 | Msa0111350:intron | 40.0% | |
| GCAGATCACTATTCCTTCAT+GGG | + | chr1_3:25046421-25046440 | Msa0111350:intron | 40.0% | |
| ! | CCTTATTGTAATGTGCTGAC+AGG | - | chr1_3:25046484-25046503 | None:intergenic | 40.0% |
| CCTGTCAGCACATTACAATA+AGG | + | chr1_3:25046481-25046500 | Msa0111350:intron | 40.0% | |
| TTGACTGAAACTGGGAAACT+TGG | + | chr1_3:25046674-25046693 | Msa0111350:CDS | 40.0% | |
| TGACTGAAACTGGGAAACTT+GGG | + | chr1_3:25046675-25046694 | Msa0111350:CDS | 40.0% | |
| GCACAAGAAAACAATGGAAC+AGG | - | chr1_3:25047211-25047230 | None:intergenic | 40.0% | |
| CTACATGGTCTGTGTTAAGT+AGG | - | chr1_3:25047520-25047539 | None:intergenic | 40.0% | |
| GATAAACCATTATGAAGGGG+GGG | - | chr1_3:25047856-25047875 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr1_3:25047986-25048005 | Msa0111350:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr1_3:25047987-25048006 | Msa0111350:intron | 40.0% |
| ATGCTTAACATGTGCCCTAA+GGG | - | chr1_3:25048004-25048023 | None:intergenic | 40.0% | |
| AATGCTTAACATGTGCCCTA+AGG | - | chr1_3:25048005-25048024 | None:intergenic | 40.0% | |
| !! | GTAATTCAGAGTGTTGTTGC+TGG | + | chr1_3:25048478-25048497 | Msa0111350:intron | 40.0% |
| !!! | GCTGGTCTTTTAATCATACC+AGG | + | chr1_3:25048496-25048515 | Msa0111350:intron | 40.0% |
| ACAAAAGAAATGCTAGTGCC+TGG | - | chr1_3:25048517-25048536 | None:intergenic | 40.0% | |
| AAACTTGTCAGGCTTTACGA+CGG | + | chr1_3:25048562-25048581 | Msa0111350:intron | 40.0% | |
| TTCACTTCGTACTAATGCTG+AGG | + | chr1_3:25048608-25048627 | Msa0111350:CDS | 40.0% | |
| !! | TCGTTTTTCATCTTGCCACA+TGG | + | chr1_3:25048852-25048871 | Msa0111350:intron | 40.0% |
| AACTTAATTGGTGAGCCATG+TGG | - | chr1_3:25048870-25048889 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTTGTGTGGGTGTG+TGG | + | chr1_3:25048912-25048931 | Msa0111350:intron | 40.0% |
| ! | AACCAAAAATGGTGGTGTGT+AGG | + | chr1_3:25049309-25049328 | Msa0111350:intron | 40.0% |
| ! | ACCAAAAATGGTGGTGTGTA+GGG | + | chr1_3:25049310-25049329 | Msa0111350:intron | 40.0% |
| GGTTGTTAAAGAGTTCCCTA+AGG | - | chr1_3:25049429-25049448 | None:intergenic | 40.0% | |
| ! | CTAACTTAGGGCACTCTTTA+AGG | - | chr1_3:25049547-25049566 | None:intergenic | 40.0% |
| CATATGGGTCTTGCTAACTT+AGG | - | chr1_3:25049560-25049579 | None:intergenic | 40.0% | |
| TTGAATGCTTGGGGTCTTTA+AGG | + | chr1_3:25049720-25049739 | Msa0111350:intron | 40.0% | |
| TGAATGCTTGGGGTCTTTAA+GGG | + | chr1_3:25049721-25049740 | Msa0111350:intron | 40.0% | |
| !! | TGCCCCAGTACTTGTTATAT+TGG | + | chr1_3:25049752-25049771 | Msa0111350:intron | 40.0% |
| !! | GCCCCAGTACTTGTTATATT+GGG | + | chr1_3:25049753-25049772 | Msa0111350:intron | 40.0% |
| TTCTATCCAATGTGGGACTT+GGG | - | chr1_3:25049784-25049803 | None:intergenic | 40.0% | |
| CAAAACCAGTTTGTAAGGAG+AGG | - | chr1_3:25049840-25049859 | None:intergenic | 40.0% | |
| AGTTAGGCCCAATTTCAACA+TGG | + | chr1_3:25049868-25049887 | Msa0111350:intron | 40.0% | |
| !! | GTATCTGAGCCTATCGATTT+GGG | + | chr1_3:25049890-25049909 | Msa0111350:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1_3:25050052-25050071 | Msa0111350:intron | 40.0% |
| AGTTAGGCCCAATTTCAACA+TGG | + | chr1_3:25049868-25049887 | Msa0111350:intron | 40.0% | |
| TCCGATGCCATGTTGAAATT+GGG | - | chr1_3:25050078-25050097 | None:intergenic | 40.0% | |
| TTGGTGCGTGTATAAATGGT+GGG | - | chr1_3:25050119-25050138 | None:intergenic | 40.0% | |
| ! | GGTTTCAGAGACTATCGATT+CGG | + | chr1_3:25050289-25050308 | Msa0111350:intron | 40.0% |
| !! | GTTTCAGAGACTATCGATTC+GGG | + | chr1_3:25050290-25050309 | Msa0111350:intron | 40.0% |
| ! | CTTGGTGCATGTATAAATGG+TGG | - | chr1_3:25050320-25050339 | None:intergenic | 40.0% |
| GAGTTCTATCTATCCAACGT+GGG | - | chr1_3:25050389-25050408 | None:intergenic | 40.0% | |
| AGAGTTCTATCTATCCAACG+TGG | - | chr1_3:25050390-25050409 | None:intergenic | 40.0% | |
| ! | GGTTTCAGAGACTATCGATT+CGG | + | chr1_3:25050289-25050308 | Msa0111350:intron | 40.0% |
| !! | GTTTCAGAGACTATCGATTC+GGG | + | chr1_3:25050290-25050309 | Msa0111350:intron | 40.0% |
| ! | CTTGGTGCATGTATAAATGG+TGG | - | chr1_3:25050320-25050339 | None:intergenic | 40.0% |
| GAGTTCTATCTATCCAACGT+GGG | - | chr1_3:25050389-25050408 | None:intergenic | 40.0% | |
| AGAGTTCTATCTATCCAACG+TGG | - | chr1_3:25050390-25050409 | None:intergenic | 40.0% | |
| TTCTGATAAGCAGAGAGATC+GGG | + | chr1_3:25050814-25050833 | Msa0111350:intron | 40.0% | |
| GCCAACAATTTAGAAGGACT+CGG | + | chr1_3:25050902-25050921 | Msa0111350:intron | 40.0% | |
| CCAACAATTTAGAAGGACTC+GGG | + | chr1_3:25050903-25050922 | Msa0111350:intron | 40.0% | |
| CAACAATTTAGAAGGACTCG+GGG | + | chr1_3:25050904-25050923 | Msa0111350:intron | 40.0% | |
| AACAATTTAGAAGGACTCGG+GGG | + | chr1_3:25050905-25050924 | Msa0111350:intron | 40.0% | |
| CCCTAAGAACACAAATGTTG+TGG | + | chr1_3:25051005-25051024 | Msa0111350:intron | 40.0% | |
| AATGGTCAAAGCTCTTGCTA+GGG | + | chr1_3:25051032-25051051 | Msa0111350:intron | 40.0% | |
| ! | TAGGGTTGTTTCAAACGTAC+AGG | + | chr1_3:25051050-25051069 | Msa0111350:intron | 40.0% |
| AGTCTATGCATGGTATGCAA+AGG | - | chr1_3:25051222-25051241 | None:intergenic | 40.0% | |
| TTGCATACCATGCATAGACT+TGG | + | chr1_3:25051222-25051241 | Msa0111350:intron | 40.0% | |
| TGCATACCATGCATAGACTT+GGG | + | chr1_3:25051223-25051242 | Msa0111350:intron | 40.0% | |
| TTCTTCCGAGATGGCTTTCA+TGG | + | chr1_3:25041315-25041334 | Msa0111350:exon | 45.0% | |
| CGCTATCCAGCTGTTAAAGA+CGG | + | chr1_3:25041385-25041404 | Msa0111350:CDS | 45.0% | |
| TGCAGAGCATGCTATTCTCA+AGG | + | chr1_3:25041408-25041427 | Msa0111350:CDS | 45.0% | |
| CATTTCTCCATCTGCTACGA+GGG | + | chr1_3:25042417-25042436 | Msa0111350:CDS | 45.0% | |
| AAAATCTCCCTCGTAGCAGA+TGG | - | chr1_3:25042427-25042446 | None:intergenic | 45.0% | |
| TATGGCCAAAAGTAAGGCCA+CGG | - | chr1_3:25042512-25042531 | None:intergenic | 45.0% | |
| ACGATTACACCCTGAAAACG+AGG | + | chr1_3:25042878-25042897 | Msa0111350:CDS | 45.0% | |
| ! | TATTATATCTTGGCTGGCCC+TGG | + | chr1_3:25042953-25042972 | Msa0111350:intron | 45.0% |
| GTGTGTGTGTGTGTCAAAGT+TGG | - | chr1_3:25043152-25043171 | None:intergenic | 45.0% | |
| !!! | CGACGTGGTTTTAACCTCAA+TGG | - | chr1_3:25043308-25043327 | None:intergenic | 45.0% |
| GTGTGTGTGTGTGTCGAAAT+TGG | - | chr1_3:25043458-25043477 | None:intergenic | 45.0% | |
| ! | CTAGAGGACTTTGAAAGGGA+AGG | + | chr1_3:25043199-25043218 | Msa0111350:intron | 45.0% |
| ! | GACTTTGAAAGGGAAGGCTT+TGG | + | chr1_3:25043509-25043528 | Msa0111350:intron | 45.0% |
| ! | CTTTGAAAGGGAAGGCTTTG+GGG | + | chr1_3:25043511-25043530 | Msa0111350:intron | 45.0% |
| !!! | TTTAGGAGTTTTGAGGGGAG+GGG | - | chr1_3:25043766-25043785 | None:intergenic | 45.0% |
| !!! | GTTTAGGAGTTTTGAGGGGA+GGG | - | chr1_3:25043767-25043786 | None:intergenic | 45.0% |
| !!! | TGTTTAGGAGTTTTGAGGGG+AGG | - | chr1_3:25043768-25043787 | None:intergenic | 45.0% |
| CCCCTCAAAACTCCTAAACA+AGG | + | chr1_3:25043768-25043787 | Msa0111350:intron | 45.0% | |
| !!! | GGCCTTGTTTAGGAGTTTTG+AGG | - | chr1_3:25043773-25043792 | None:intergenic | 45.0% |
| CTCCTAAACAAGGCCTTAAG+GGG | + | chr1_3:25043778-25043797 | Msa0111350:intron | 45.0% | |
| GCTCAATTAAACTGGGATGG+AGG | - | chr1_3:25043951-25043970 | None:intergenic | 45.0% | |
| CTGGCTCAATTAAACTGGGA+TGG | - | chr1_3:25043954-25043973 | None:intergenic | 45.0% | |
| !! | GCTTAGTTTTTATGGGACGG+AGG | + | chr1_3:25044208-25044227 | Msa0111350:intron | 45.0% |
| !! | GTGTGTCTGAGAAGTGTTGA+AGG | + | chr1_3:25044437-25044456 | Msa0111350:intron | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1_3:25044815-25044834 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1_3:25044812-25044831 | Msa0111350:intron | 45.0% |
| !! | TACAAGCCGGTTTTGTAAGG+AGG | + | chr1_3:25044815-25044834 | Msa0111350:intron | 45.0% |
| ! | ACTTAGGGCATTTGGGTCAT+TGG | + | chr1_3:25045053-25045072 | Msa0111350:intron | 45.0% |
| ! | GCATTTGGGTCATTGGTGTT+TGG | + | chr1_3:25045060-25045079 | Msa0111350:intron | 45.0% |
| !! | TGATTGGTGCCAACTCAACA+TGG | + | chr1_3:25045988-25046007 | Msa0111350:intron | 45.0% |
| !! | GATTGGTGCCAACTCAACAT+GGG | + | chr1_3:25045989-25046008 | Msa0111350:intron | 45.0% |
| AACCACTTGGTCGAAAACCA+AGG | - | chr1_3:25046272-25046291 | None:intergenic | 45.0% | |
| ! | GGTTTTCGACCAAGTGGTTT+TGG | + | chr1_3:25046273-25046292 | Msa0111350:CDS | 45.0% |
| TCTCTTCCTGCCGGAAAATT+TGG | + | chr1_3:25046301-25046320 | Msa0111350:CDS | 45.0% | |
| ! | CCATAACCAAATTTTCCGGC+AGG | - | chr1_3:25046310-25046329 | None:intergenic | 45.0% |
| CCTGCCGGAAAATTTGGTTA+TGG | + | chr1_3:25046307-25046326 | Msa0111350:CDS | 45.0% | |
| GCCGGAAAATTTGGTTATGG+AGG | + | chr1_3:25046310-25046329 | Msa0111350:CDS | 45.0% | |
| TGCGCGTAAACATTGTTCAG+AGG | + | chr1_3:25046942-25046961 | Msa0111350:intron | 45.0% | |
| AAAACCAGCTTGTAGGGTGA+GGG | - | chr1_3:25047109-25047128 | None:intergenic | 45.0% | |
| TGGAACAGGTAGTTGAATCG+AGG | - | chr1_3:25047197-25047216 | None:intergenic | 45.0% | |
| CATGGGTTCATGGTTCAATC+AGG | - | chr1_3:25047244-25047263 | None:intergenic | 45.0% | |
| ! | TGATACCAACGTGGACTACA+TGG | - | chr1_3:25047535-25047554 | None:intergenic | 45.0% |
| !! | TTGGTGACTGGAAGCATTAG+AGG | + | chr1_3:25047740-25047759 | Msa0111350:intron | 45.0% |
| GGCTTGAAACGCTATGTAAG+TGG | - | chr1_3:25048225-25048244 | None:intergenic | 45.0% | |
| AACCTTGATACCCTACGAAC+AGG | + | chr1_3:25048441-25048460 | Msa0111350:CDS | 45.0% | |
| AATCAGCTTGAAGGAGAAGC+TGG | + | chr1_3:25048731-25048750 | Msa0111350:intron | 45.0% | |
| ! | TGAACCTAGCTTTCGTCGTT+TGG | + | chr1_3:25048754-25048773 | Msa0111350:CDS | 45.0% |
| AAGACCAAACGACGAAAGCT+AGG | - | chr1_3:25048761-25048780 | None:intergenic | 45.0% | |
| ! | TACCTCACACTCGGTGATAA+GGG | - | chr1_3:25048822-25048841 | None:intergenic | 45.0% |
| ! | TTACCTCACACTCGGTGATA+AGG | - | chr1_3:25048823-25048842 | None:intergenic | 45.0% |
| ATGGAAGCTTACCTCACACT+CGG | - | chr1_3:25048831-25048850 | None:intergenic | 45.0% | |
| ! | TCCCTACACACCACCATTTT+TGG | - | chr1_3:25049314-25049333 | None:intergenic | 45.0% |
| GAAAAGAATCCGCAATGTCC+GGG | - | chr1_3:25049350-25049369 | None:intergenic | 45.0% | |
| GGAAAAGAATCCGCAATGTC+CGG | - | chr1_3:25049351-25049370 | None:intergenic | 45.0% | |
| GCTCAATGCTAGAGTCTAGA+AGG | + | chr1_3:25049611-25049630 | Msa0111350:intron | 45.0% | |
| ACACGCACATACATAGACCA+AGG | - | chr1_3:25049637-25049656 | None:intergenic | 45.0% | |
| TAACCTGCATGTCGCCATAA+AGG | - | chr1_3:25049672-25049691 | None:intergenic | 45.0% | |
| ! | ATGCAATTCTTTGGTGCACG+TGG | + | chr1_3:25049691-25049710 | Msa0111350:intron | 45.0% |
| !! | GTGGCTTGAGTTGAATGCTT+GGG | + | chr1_3:25049710-25049729 | Msa0111350:intron | 45.0% |
| !! | TGGCTTGAGTTGAATGCTTG+GGG | + | chr1_3:25049711-25049730 | Msa0111350:intron | 45.0% |
| GAAAAACCCAAGTCCCACAT+TGG | + | chr1_3:25049775-25049794 | Msa0111350:intron | 45.0% | |
| GTTCTATCCAATGTGGGACT+TGG | - | chr1_3:25049785-25049804 | None:intergenic | 45.0% | |
| ACACTCCTCTCCTTACAAAC+TGG | + | chr1_3:25049832-25049851 | Msa0111350:intron | 45.0% | |
| ! | GGTATCTGAGCCTATCGATT+TGG | + | chr1_3:25049889-25049908 | Msa0111350:intron | 45.0% |
| TTGGTGCGTGCATAAATGGT+AGG | - | chr1_3:25049919-25049938 | None:intergenic | 45.0% | |
| GCACCAAGCTCAATAGTGTT+GGG | + | chr1_3:25049932-25049951 | Msa0111350:intron | 45.0% | |
| TCACCCAACACTATTGAGCT+TGG | - | chr1_3:25049938-25049957 | None:intergenic | 45.0% | |
| ! | AAGCTCAATAGTGTTGGGTG+AGG | + | chr1_3:25049937-25049956 | Msa0111350:intron | 45.0% |
| ! | AGCTCAATAGTGTTGGGTGA+GGG | + | chr1_3:25049938-25049957 | Msa0111350:intron | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1_3:25044815-25044834 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1_3:25044812-25044831 | Msa0111350:intron | 45.0% |
| GCCCAATTTCAACATGGCAT+CGG | + | chr1_3:25050074-25050093 | Msa0111350:intron | 45.0% | |
| CTCCGATGCCATGTTGAAAT+TGG | - | chr1_3:25050079-25050098 | None:intergenic | 45.0% | |
| ! | CTTGGTGCGTGTATAAATGG+TGG | - | chr1_3:25050120-25050139 | None:intergenic | 45.0% |
| CCCTTATGCCCAACACTATT+GGG | - | chr1_3:25050143-25050162 | None:intergenic | 45.0% | |
| ! | CCCAATAGTGTTGGGCATAA+GGG | + | chr1_3:25050140-25050159 | Msa0111350:intron | 45.0% |
| ACCCTTATGCCCAACACTAT+TGG | - | chr1_3:25050144-25050163 | None:intergenic | 45.0% | |
| ! | TGTTGGGCATAAGGGTGTAT+TGG | + | chr1_3:25050148-25050167 | Msa0111350:intron | 45.0% |
| ! | GTTGGGCATAAGGGTGTATT+GGG | + | chr1_3:25050149-25050168 | Msa0111350:intron | 45.0% |
| GAAAAACGCAAGTCCCACAT+TGG | + | chr1_3:25050171-25050190 | Msa0111350:intron | 45.0% | |
| CCTTACAAAGCAGGCTTGTA+AGG | - | chr1_3:25050245-25050264 | None:intergenic | 45.0% | |
| CCTTACAAGCCTGCTTTGTA+AGG | + | chr1_3:25050242-25050261 | Msa0111350:intron | 45.0% | |
| CCTGCTTTGTAAGGATGAGT+CGG | + | chr1_3:25050251-25050270 | Msa0111350:intron | 45.0% | |
| CTGCTTTGTAAGGATGAGTC+GGG | + | chr1_3:25050252-25050271 | Msa0111350:intron | 45.0% | |
| ! | GTGCATGTATAAATGGTGGG+TGG | - | chr1_3:25050316-25050335 | None:intergenic | 45.0% |
| !! | GGGCTTGGTGCATGTATAAA+TGG | - | chr1_3:25050323-25050342 | None:intergenic | 45.0% |
| ATCTATCCAACGTGGGACTT+GGG | - | chr1_3:25050382-25050401 | None:intergenic | 45.0% | |
| TATCTATCCAACGTGGGACT+TGG | - | chr1_3:25050383-25050402 | None:intergenic | 45.0% | |
| CCTTACAAAACCAGCGTGTA+AGG | - | chr1_3:25050447-25050466 | None:intergenic | 45.0% | |
| !!! | CCTTACACGCTGGTTTTGTA+AGG | + | chr1_3:25050444-25050463 | Msa0111350:intron | 45.0% |
| ! | GTGCATGTATAAATGGTGGG+TGG | - | chr1_3:25050316-25050335 | None:intergenic | 45.0% |
| !! | GGGCTTGGTGCATGTATAAA+TGG | - | chr1_3:25050323-25050342 | None:intergenic | 45.0% |
| ATCTATCCAACGTGGGACTT+GGG | - | chr1_3:25050382-25050401 | None:intergenic | 45.0% | |
| TATCTATCCAACGTGGGACT+TGG | - | chr1_3:25050383-25050402 | None:intergenic | 45.0% | |
| CCTTACAAAACCAGCGTGTA+AGG | - | chr1_3:25050447-25050466 | None:intergenic | 45.0% | |
| !!! | CCTTACACGCTGGTTTTGTA+AGG | + | chr1_3:25050444-25050463 | Msa0111350:intron | 45.0% |
| CCCGAGTCCTTCTAAATTGT+TGG | - | chr1_3:25050906-25050925 | None:intergenic | 45.0% | |
| CACAAATGTTGTGGAGGGAA+TGG | + | chr1_3:25051014-25051033 | Msa0111350:intron | 45.0% | |
| GAATGGTCAAAGCTCTTGCT+AGG | + | chr1_3:25051031-25051050 | Msa0111350:intron | 45.0% | |
| AGGCAGGATGAGAAGATGTA+TGG | - | chr1_3:25051202-25051221 | None:intergenic | 45.0% | |
| TATGCATGGTATGCAAAGGC+AGG | - | chr1_3:25051218-25051237 | None:intergenic | 45.0% | |
| GCATACCATGCATAGACTTG+GGG | + | chr1_3:25051224-25051243 | Msa0111350:intron | 45.0% | |
| CATACCATGCATAGACTTGG+GGG | + | chr1_3:25051225-25051244 | Msa0111350:intron | 45.0% | |
| ATACCATGCATAGACTTGGG+GGG | + | chr1_3:25051226-25051245 | Msa0111350:intron | 45.0% | |
| GACTCACGTGTGGAAGAGTT+GGG | - | chr1_3:25041173-25041192 | None:intergenic | 50.0% | |
| TGACTCACGTGTGGAAGAGT+TGG | - | chr1_3:25041174-25041193 | None:intergenic | 50.0% | |
| ! | GAGTTTTTACCACTCGGGGA+AGG | - | chr1_3:25041256-25041275 | None:intergenic | 50.0% |
| TTCCGAGATGGCTTTCATGG+CGG | + | chr1_3:25041318-25041337 | Msa0111350:exon | 50.0% | |
| TCTGCACCGTCTTTAACAGC+TGG | - | chr1_3:25041394-25041413 | None:intergenic | 50.0% | |
| GCATGCTATTCTCAAGGTGC+TGG | + | chr1_3:25041414-25041433 | Msa0111350:intron | 50.0% | |
| CCTCGTAGCAGATGGAGAAA+TGG | - | chr1_3:25042419-25042438 | None:intergenic | 50.0% | |
| CCATTTCTCCATCTGCTACG+AGG | + | chr1_3:25042416-25042435 | Msa0111350:CDS | 50.0% | |
| !! | TTGCACCGTGGCCTTACTTT+TGG | + | chr1_3:25042504-25042523 | Msa0111350:intron | 50.0% |
| ! | TCGAATCAAAGTACCCCCTC+TGG | - | chr1_3:25042678-25042697 | None:intergenic | 50.0% |
| !! | GAGGGGGTACTTTGATTCGA+TGG | + | chr1_3:25042678-25042697 | Msa0111350:intron | 50.0% |
| ACCCTTGCAGCATGCTGAAA+TGG | + | chr1_3:25042800-25042819 | Msa0111350:intron | 50.0% | |
| GCCATTTCAGCATGCTGCAA+GGG | - | chr1_3:25042804-25042823 | None:intergenic | 50.0% | |
| CTTGCAGCATGCTGAAATGG+CGG | + | chr1_3:25042803-25042822 | Msa0111350:intron | 50.0% | |
| !! | CATGCTGAAATGGCGGATGA+GGG | + | chr1_3:25042810-25042829 | Msa0111350:CDS | 50.0% |
| TGGACCCAATGAGAATTGGG+AGG | - | chr1_3:25043260-25043279 | None:intergenic | 50.0% | |
| TTGAGTTCCCCCAAAATGGG+AGG | - | chr1_3:25043563-25043582 | None:intergenic | 50.0% | |
| !! | TGCCCCTTAAGGCCTTGTTT+AGG | - | chr1_3:25043783-25043802 | None:intergenic | 50.0% |
| GACGCTCGTACAACAAGTGT+CGG | - | chr1_3:25044514-25044533 | None:intergenic | 50.0% | |
| TACGAGCGTCATACAAGTGC+CGG | + | chr1_3:25044524-25044543 | Msa0111350:intron | 50.0% | |
| ACTGACGTGTGTCCAACACT+AGG | + | chr1_3:25044549-25044568 | Msa0111350:intron | 50.0% | |
| AACAGTGATCAGAGGCCAGA+GGG | - | chr1_3:25044726-25044745 | None:intergenic | 50.0% | |
| TAACAGTGATCAGAGGCCAG+AGG | - | chr1_3:25044727-25044746 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1_3:25044810-25044829 | None:intergenic | 50.0% |
| AAGCTCTTGGCATCTGTCTC+AGG | + | chr1_3:25045311-25045330 | Msa0111350:CDS | 50.0% | |
| AGTCAGGTGACTTCCAACCT+TGG | + | chr1_3:25045543-25045562 | Msa0111350:intron | 50.0% | |
| !! | TGCCTTGGTTTTCGACCAAG+TGG | + | chr1_3:25046267-25046286 | Msa0111350:CDS | 50.0% |
| GAGACTCAGCCAAAACCACT+TGG | - | chr1_3:25046285-25046304 | None:intergenic | 50.0% | |
| AACGTCTCCCTCATCACATG+AGG | - | chr1_3:25046656-25046675 | None:intergenic | 50.0% | |
| ! | AGGGAGACGTTGACTGAAAC+TGG | + | chr1_3:25046665-25046684 | Msa0111350:CDS | 50.0% |
| ! | GGGAGACGTTGACTGAAACT+GGG | + | chr1_3:25046666-25046685 | Msa0111350:CDS | 50.0% |
| AAACCAGCTTGTAGGGTGAG+GGG | - | chr1_3:25047108-25047127 | None:intergenic | 50.0% | |
| CAAAACCAGCTTGTAGGGTG+AGG | - | chr1_3:25047110-25047129 | None:intergenic | 50.0% | |
| ACAGACCATGTAGTCCACGT+TGG | + | chr1_3:25047527-25047546 | Msa0111350:intron | 50.0% | |
| ! | CACCTGTTCGTAGGGTATCA+AGG | - | chr1_3:25048446-25048465 | None:intergenic | 50.0% |
| TTCCCTTATCACCGAGTGTG+AGG | + | chr1_3:25048817-25048836 | Msa0111350:CDS | 50.0% | |
| TGTGTAGGGATTCTGCGTTG+AGG | + | chr1_3:25049324-25049343 | Msa0111350:intron | 50.0% | |
| TGCTAGAGTCTAGAAGGCCT+TGG | + | chr1_3:25049617-25049636 | Msa0111350:intron | 50.0% | |
| AAGCCTTTATGGCGACATGC+AGG | + | chr1_3:25049666-25049685 | Msa0111350:intron | 50.0% | |
| !! | CGTGGCTTGAGTTGAATGCT+TGG | + | chr1_3:25049709-25049728 | Msa0111350:intron | 50.0% |
| GTGCGTGCATAAATGGTAGG+TGG | - | chr1_3:25049916-25049935 | None:intergenic | 50.0% | |
| !! | GAGCTTGGTGCGTGCATAAA+TGG | - | chr1_3:25049923-25049942 | None:intergenic | 50.0% |
| CGCACCAAGCTCAATAGTGT+TGG | + | chr1_3:25049931-25049950 | Msa0111350:intron | 50.0% | |
| ! | GCTCAATAGTGTTGGGTGAG+GGG | + | chr1_3:25049939-25049958 | Msa0111350:intron | 50.0% |
| ! | CTCAATAGTGTTGGGTGAGG+GGG | + | chr1_3:25049940-25049959 | Msa0111350:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1_3:25044810-25044829 | None:intergenic | 50.0% |
| ! | GTGCGTGTATAAATGGTGGG+TGG | - | chr1_3:25050116-25050135 | None:intergenic | 50.0% |
| !! | GGGCTTGGTGCGTGTATAAA+TGG | - | chr1_3:25050123-25050142 | None:intergenic | 50.0% |
| GCACCAAGCCCAATAGTGTT+GGG | + | chr1_3:25050132-25050151 | Msa0111350:intron | 50.0% | |
| ATGCCCAACACTATTGGGCT+TGG | - | chr1_3:25050138-25050157 | None:intergenic | 50.0% | |
| ! | GCCCAATAGTGTTGGGCATA+AGG | + | chr1_3:25050139-25050158 | Msa0111350:intron | 50.0% |
| CAAAGCAGGCTTGTAAGGTG+AGG | - | chr1_3:25050240-25050259 | None:intergenic | 50.0% | |
| CCGACTCATCCTTACAAAGC+AGG | - | chr1_3:25050254-25050273 | None:intergenic | 50.0% | |
| AGTCGGGCCCAATTTCAACA+TGG | + | chr1_3:25050268-25050287 | Msa0111350:intron | 50.0% | |
| GAAAAACCCAAGTCCCACGT+TGG | + | chr1_3:25050373-25050392 | Msa0111350:intron | 50.0% | |
| CAAAACCAGCGTGTAAGGTG+AGG | - | chr1_3:25050442-25050461 | None:intergenic | 50.0% | |
| CAAAACCAGCGTGTAAGGTG+AGG | - | chr1_3:25050442-25050461 | None:intergenic | 50.0% | |
| ! | TAGGGTGCCTACAATGCCAA+TGG | - | chr1_3:25050990-25051009 | None:intergenic | 50.0% |
| AGAATCAAGTGAGGAGAGCC+TGG | + | chr1_3:25051335-25051354 | Msa0111350:CDS | 50.0% | |
| ACACGTGAGTCACTGCGTTG+CGG | + | chr1_3:25041182-25041201 | Msa0111350:five_prime_UTR | 55.0% | |
| CGAGTGAGGACTCTTCGTCA+GGG | - | chr1_3:25041295-25041314 | None:intergenic | 55.0% | |
| ACGAGTGAGGACTCTTCGTC+AGG | - | chr1_3:25041296-25041315 | None:intergenic | 55.0% | |
| CCATCTCGGAAGAACGAGTG+AGG | - | chr1_3:25041309-25041328 | None:intergenic | 55.0% | |
| CCTCACTCGTTCTTCCGAGA+TGG | + | chr1_3:25041306-25041325 | Msa0111350:exon | 55.0% | |
| GACCGCCATGAAAGCCATCT+CGG | - | chr1_3:25041323-25041342 | None:intergenic | 55.0% | |
| GATGGCTTTCATGGCGGTCT+TGG | + | chr1_3:25041324-25041343 | Msa0111350:exon | 55.0% | |
| TGGATAGCGACGTCGAGCTT+CGG | - | chr1_3:25041374-25041393 | None:intergenic | 55.0% | |
| TGCTGCAAGGGTTAAGCAGC+AGG | - | chr1_3:25042792-25042811 | None:intergenic | 55.0% | |
| CGCCATTTCAGCATGCTGCA+AGG | - | chr1_3:25042805-25042824 | None:intergenic | 55.0% | |
| !! | GCATGCTGAAATGGCGGATG+AGG | + | chr1_3:25042809-25042828 | Msa0111350:intron | 55.0% |
| GTTGGACACACGTCAGTGTC+CGG | - | chr1_3:25044546-25044565 | None:intergenic | 55.0% | |
| GATTAGGCGCGTCCTAGTGT+TGG | - | chr1_3:25044564-25044583 | None:intergenic | 55.0% | |
| ACTAGGACGCGCCTAATCTG+AGG | + | chr1_3:25044566-25044585 | Msa0111350:intron | 55.0% | |
| GCACGGACACTCCTCAGATT+AGG | - | chr1_3:25044580-25044599 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr1_3:25044802-25044821 | Msa0111350:intron | 55.0% | |
| GTACTGCTGCAGCTACCTTC+AGG | + | chr1_3:25046236-25046255 | Msa0111350:intron | 55.0% | |
| CAAGGCAACTGCTTGCCTGA+AGG | - | chr1_3:25046254-25046273 | None:intergenic | 55.0% | |
| CTTCAGGCAAGCAGTTGCCT+TGG | + | chr1_3:25046252-25046271 | Msa0111350:CDS | 55.0% | |
| TTGGCTGAGTCTCTTCCTGC+CGG | + | chr1_3:25046292-25046311 | Msa0111350:CDS | 55.0% | |
| GTTATGGAGGGCAGCTCTCA+CGG | + | chr1_3:25046323-25046342 | Msa0111350:CDS | 55.0% | |
| TTGGAGGGCCTCATGTGATG+AGG | + | chr1_3:25046645-25046664 | Msa0111350:CDS | 55.0% | |
| TGGAGGGCCTCATGTGATGA+GGG | + | chr1_3:25046646-25046665 | Msa0111350:CDS | 55.0% | |
| GACCTGACATCTCTTGCTGC+AGG | + | chr1_3:25046713-25046732 | Msa0111350:CDS | 55.0% | |
| CACCTGCAGCAAGAGATGTC+AGG | - | chr1_3:25046718-25046737 | None:intergenic | 55.0% | |
| CTGACATCTCTTGCTGCAGG+TGG | + | chr1_3:25046716-25046735 | Msa0111350:CDS | 55.0% | |
| CCATTATGAAGGGGGGGAAC+TGG | - | chr1_3:25047850-25047869 | None:intergenic | 55.0% | |
| CCAGTTCCCCCCCTTCATAA+TGG | + | chr1_3:25047847-25047866 | Msa0111350:intron | 55.0% | |
| TTTGTGTGGGTGTGTGGAGC+AGG | + | chr1_3:25048918-25048937 | Msa0111350:intron | 55.0% | |
| TTGTGTGGGTGTGTGGAGCA+GGG | + | chr1_3:25048919-25048938 | Msa0111350:intron | 55.0% | |
| GGTAGGTGGCCCAAATCGAT+AGG | - | chr1_3:25049902-25049921 | None:intergenic | 55.0% | |
| ! | GTTGGGTGAGGGGGTGTATT+TGG | + | chr1_3:25049949-25049968 | Msa0111350:intron | 55.0% |
| GCACTCCTCACCTTACAAGC+CGG | + | chr1_3:25044802-25044821 | Msa0111350:intron | 55.0% | |
| GGTGGGTGGCTCAAATCGAT+AGG | - | chr1_3:25050102-25050121 | None:intergenic | 55.0% | |
| CGCACCAAGCCCAATAGTGT+TGG | + | chr1_3:25050131-25050150 | Msa0111350:intron | 55.0% | |
| GCACCAAGCCCAATAGTGCT+AGG | + | chr1_3:25050332-25050351 | Msa0111350:intron | 55.0% | |
| ACGCCTAGCACTATTGGGCT+TGG | - | chr1_3:25050338-25050357 | None:intergenic | 55.0% | |
| CCCTCACGCCTAGCACTATT+GGG | - | chr1_3:25050343-25050362 | None:intergenic | 55.0% | |
| CCCAATAGTGCTAGGCGTGA+GGG | + | chr1_3:25050340-25050359 | Msa0111350:intron | 55.0% | |
| CCAATAGTGCTAGGCGTGAG+GGG | + | chr1_3:25050341-25050360 | Msa0111350:intron | 55.0% | |
| CAATAGTGCTAGGCGTGAGG+GGG | + | chr1_3:25050342-25050361 | Msa0111350:intron | 55.0% | |
| ! | TAGGCGTGAGGGGGTGTATT+GGG | + | chr1_3:25050351-25050370 | Msa0111350:intron | 55.0% |
| ACACTCCTCACCTTACACGC+TGG | + | chr1_3:25050434-25050453 | Msa0111350:intron | 55.0% | |
| GCACCAAGCCCAATAGTGCT+AGG | + | chr1_3:25050332-25050351 | Msa0111350:intron | 55.0% | |
| ACGCCTAGCACTATTGGGCT+TGG | - | chr1_3:25050338-25050357 | None:intergenic | 55.0% | |
| CCCTCACGCCTAGCACTATT+GGG | - | chr1_3:25050343-25050362 | None:intergenic | 55.0% | |
| CCCAATAGTGCTAGGCGTGA+GGG | + | chr1_3:25050340-25050359 | Msa0111350:intron | 55.0% | |
| CCAATAGTGCTAGGCGTGAG+GGG | + | chr1_3:25050341-25050360 | Msa0111350:intron | 55.0% | |
| CAATAGTGCTAGGCGTGAGG+GGG | + | chr1_3:25050342-25050361 | Msa0111350:intron | 55.0% | |
| ! | TAGGCGTGAGGGGGTGTATT+GGG | + | chr1_3:25050351-25050370 | Msa0111350:intron | 55.0% |
| GGAAAACCCAAGTCCCACGT+TGG | + | chr1_3:25050628-25050647 | Msa0111350:intron | 55.0% | |
| ACACTCCTCACCTTACACGC+TGG | + | chr1_3:25050434-25050453 | Msa0111350:intron | 55.0% | |
| GAGAGATCGGGCATCCTAGT+TGG | + | chr1_3:25050826-25050845 | Msa0111350:intron | 55.0% | |
| TGTCCCCCCAAGTCTATGCA+TGG | - | chr1_3:25051232-25051251 | None:intergenic | 55.0% | |
| ATGCATAGACTTGGGGGGAC+AGG | + | chr1_3:25051231-25051250 | Msa0111350:intron | 55.0% | |
| ACATTCCTGCAACAGCTGCC+AGG | - | chr1_3:25051356-25051375 | None:intergenic | 55.0% | |
| GCAACGCAGTGACTCACGTG+TGG | - | chr1_3:25041183-25041202 | None:intergenic | 60.0% | |
| ACCACACTTCCTTCCCCGAG+TGG | + | chr1_3:25041244-25041263 | Msa0111350:five_prime_UTR | 60.0% | |
| ACCACTCGGGGAAGGAAGTG+TGG | - | chr1_3:25041248-25041267 | None:intergenic | 60.0% | |
| ATAGCGACGTCGAGCTTCGG+CGG | - | chr1_3:25041371-25041390 | None:intergenic | 60.0% | |
| ! | GGCTGGCCCTGGAATGTAGT+AGG | + | chr1_3:25042964-25042983 | Msa0111350:intron | 60.0% |
| !!! | GGAGTTTTGAGGGGAGGGGA+GGG | - | chr1_3:25043762-25043781 | None:intergenic | 60.0% |
| !!! | AGGAGTTTTGAGGGGAGGGG+AGG | - | chr1_3:25043763-25043782 | None:intergenic | 60.0% |
| TGTGTGGGTGTGTGGAGCAG+GGG | + | chr1_3:25048920-25048939 | Msa0111350:intron | 60.0% | |
| GTGTGTGGAGCAGGGGTAGT+TGG | + | chr1_3:25048927-25048946 | Msa0111350:intron | 60.0% | |
| AGGGATTCTGCGTTGAGGCC+CGG | + | chr1_3:25049329-25049348 | Msa0111350:intron | 60.0% | |
| GCCCAATAGTGCTAGGCGTG+AGG | + | chr1_3:25050339-25050358 | Msa0111350:intron | 60.0% | |
| CCCCTCACGCCTAGCACTAT+TGG | - | chr1_3:25050344-25050363 | None:intergenic | 60.0% | |
| ! | CTAGGCGTGAGGGGGTGTAT+TGG | + | chr1_3:25050350-25050369 | Msa0111350:intron | 60.0% |
| GCCCAATAGTGCTAGGCGTG+AGG | + | chr1_3:25050339-25050358 | Msa0111350:intron | 60.0% | |
| CCCCTCACGCCTAGCACTAT+TGG | - | chr1_3:25050344-25050363 | None:intergenic | 60.0% | |
| ! | CTAGGCGTGAGGGGGTGTAT+TGG | + | chr1_3:25050350-25050369 | Msa0111350:intron | 60.0% |
| ! | TGAGGGGAGGGGAGGGCTTT+TGG | - | chr1_3:25043755-25043774 | None:intergenic | 65.0% |
| GCACCCCTCACCCTACAAGC+TGG | + | chr1_3:25047102-25047121 | Msa0111350:intron | 65.0% | |
| GCGTTGAGGCCCGGACATTG+CGG | + | chr1_3:25049338-25049357 | Msa0111350:intron | 65.0% | |
| GAGAGCCTGGCAGCTGTTGC+AGG | + | chr1_3:25051348-25051367 | Msa0111350:CDS | 65.0% | |
| GAGCTTCGGCGGAGAGAGCG+CGG | - | chr1_3:25041360-25041379 | None:intergenic | 70.0% | |
| ! | CTTCGGCGGAGAGAGCGCGG+AGG | - | chr1_3:25041357-25041376 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 25041092 | 25051392 | 25041092 | ID=Msa0111350;Name=Msa0111350 |
| chr1_3 | mRNA | 25041092 | 25051392 | 25041092 | ID=Msa0111350-mRNA-1;Parent=Msa0111350;Name=Msa0111350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=233|0.7|0.90|1|0.7|0.72|11|0|365 |
| chr1_3 | exon | 25041092 | 25041429 | 25041092 | ID=Msa0111350-mRNA-1:exon:8554;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25042277 | 25042462 | 25042277 | ID=Msa0111350-mRNA-1:exon:8555;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25042810 | 25042899 | 25042810 | ID=Msa0111350-mRNA-1:exon:8556;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25045298 | 25045371 | 25045298 | ID=Msa0111350-mRNA-1:exon:8557;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25046237 | 25046386 | 25046237 | ID=Msa0111350-mRNA-1:exon:8558;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25046622 | 25046742 | 25046622 | ID=Msa0111350-mRNA-1:exon:8559;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25048397 | 25048462 | 25048397 | ID=Msa0111350-mRNA-1:exon:8560;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25048573 | 25048629 | 25048573 | ID=Msa0111350-mRNA-1:exon:8561;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25048737 | 25048838 | 25048737 | ID=Msa0111350-mRNA-1:exon:8562;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25049148 | 25049228 | 25049148 | ID=Msa0111350-mRNA-1:exon:8563;Parent=Msa0111350-mRNA-1 |
| chr1_3 | exon | 25051330 | 25051392 | 25051330 | ID=Msa0111350-mRNA-1:exon:8564;Parent=Msa0111350-mRNA-1 |
| chr1_3 | five_prime_UTR | 25041092 | 25041324 | 25041092 | ID=Msa0111350-mRNA-1:five_prime_utr;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25041325 | 25041429 | 25041325 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25042277 | 25042462 | 25042277 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25042810 | 25042899 | 25042810 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25045298 | 25045371 | 25045298 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25046237 | 25046386 | 25046237 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25046622 | 25046742 | 25046622 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25048397 | 25048462 | 25048397 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25048573 | 25048629 | 25048573 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25048737 | 25048838 | 25048737 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25049148 | 25049228 | 25049148 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| chr1_3 | CDS | 25051330 | 25051392 | 25051330 | ID=Msa0111350-mRNA-1:cds;Parent=Msa0111350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
