AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0113300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113300 MtrunA17_Chr7g0226311 95.562 338 15 0 95 432 1 338 0.0 678
Msa0113300 MtrunA17_Chr6g0478531 41.834 349 179 6 103 430 38 383 1.43e-88 274
Msa0113300 MtrunA17_Chr6g0477141 46.780 295 148 5 90 378 125 416 2.30e-88 276
Msa0113300 MtrunA17_Chr1g0207391 39.222 334 189 4 105 427 90 420 1.21e-82 260
Msa0113300 MtrunA17_Chr8g0391981 40.816 343 178 5 104 430 78 411 4.14e-79 251
Msa0113300 MtrunA17_Chr1g0172731 44.444 324 156 8 103 417 66 374 9.60e-79 249
Msa0113300 MtrunA17_Chr1g0190171 43.827 324 158 8 103 417 66 374 8.46e-78 247
Msa0113300 MtrunA17_Chr4g0018411 70.345 145 43 0 286 430 9 153 4.67e-71 221
Msa0113300 MtrunA17_Chr1g0182341 32.067 421 208 13 45 429 4 382 8.17e-57 192
Msa0113300 MtrunA17_Chr2g0321401 45.274 201 94 4 103 292 65 260 4.87e-50 170
Msa0113300 MtrunA17_Chr2g0285471 45.178 197 92 4 107 292 1 192 2.75e-48 164
Msa0113300 MtrunA17_Chr8g0334561 43.655 197 103 3 103 292 66 261 5.08e-47 162
Msa0113300 MtrunA17_Chr7g0267201 43.226 155 79 2 115 260 6 160 4.10e-36 130
Msa0113300 MtrunA17_Chr2g0302711 83.871 62 10 0 1 62 1 62 2.76e-28 106
Msa0113300 MtrunA17_Chr4g0018401 51.923 104 49 1 30 132 25 128 2.68e-26 102
Msa0113300 MtrunA17_Chr8g0361831 90.323 31 3 0 1 31 1 31 2.23e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113300 AT5G41980.1 37.209 344 187 6 101 430 39 367 4.16e-70 226
Msa0113300 AT1G43722.1 37.795 254 148 4 104 347 66 319 2.45e-48 168
Msa0113300 AT5G35695.1 43.646 181 84 6 253 427 25 193 1.04e-36 134
Msa0113300 AT5G28730.1 32.018 228 121 6 86 305 4 205 7.41e-31 120
Msa0113300 AT5G28950.1 55.422 83 37 0 194 276 8 90 2.45e-28 109
Msa0113300 AT3G30525.1 37.821 156 88 4 215 363 1 154 3.62e-25 101
Msa0113300 AT3G55350.1 29.018 224 111 8 210 413 182 377 5.72e-17 82.8

Find 267 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTATCCTTTGTAAAT+TGG 0.132740 1_3:-29211621 Msa0113300:five_prime_UTR
TGTTGTTGATCTTATATAAA+AGG 0.139981 1_3:-29211730 Msa0113300:five_prime_UTR
ACTGGATGATGAATTAATTT+TGG 0.165135 1_3:-29210463 Msa0113300:five_prime_UTR
TTGAAACTAAATGCATTTAT+AGG 0.171784 1_3:-29207689 Msa0113300:three_prime_UTR
TGTTTCAATTGATAAATATT+TGG 0.173013 1_3:-29207788 Msa0113300:three_prime_UTR
TGGTGTTCAATTTATAATTA+AGG 0.187981 1_3:+29209917 None:intergenic
TTCATGTTGTTAGCCTCTTT+TGG 0.232792 1_3:-29209864 Msa0113300:five_prime_UTR
TAACCTTCAGGAATTATTAA+AGG 0.236537 1_3:+29208464 None:intergenic
TGTTGCTCTATGTTTGTTAC+AGG 0.237896 1_3:+29209982 None:intergenic
TTCTGATCAATTGCATGATA+TGG 0.242975 1_3:-29206772 Msa0113300:three_prime_UTR
GCCAACTATGGCATTTCTTA+TGG 0.249341 1_3:-29206273 Msa0113300:three_prime_UTR
CTTCATCATGTTGTTGTGTT+TGG 0.250481 1_3:+29207986 None:intergenic
ATGCATTTATAGGTTGAAAA+TGG 0.255250 1_3:-29207679 Msa0113300:three_prime_UTR
ACCGACTAGGATCGCTTCTT+AGG 0.268580 1_3:-29207960 Msa0113300:CDS
TTAACAGCATAGATTTATTA+AGG 0.269972 1_3:+29209617 None:intergenic
GGTGAAGCATATGATCTATT+TGG 0.277405 1_3:-29207411 Msa0113300:three_prime_UTR
TGCTTCAGATATTGACAAAA+TGG 0.285272 1_3:+29210784 None:intergenic
AATATTATTGAATGCTTTGA+TGG 0.286306 1_3:-29207580 Msa0113300:three_prime_UTR
CCAATACAGAGTAGATAAAA+AGG 0.286642 1_3:+29209499 None:intergenic
AGGACTATGGTATGCAAATA+AGG 0.288726 1_3:+29210002 None:intergenic
AACTGTCAACGTATACTTTA+GGG 0.290786 1_3:+29211454 None:intergenic
AAATCCACAGTTTGATCCTT+TGG 0.296640 1_3:-29210358 Msa0113300:five_prime_UTR
ATGTAAAATTCAAAATTTCT+AGG 0.299221 1_3:+29211196 None:intergenic
GCCCACTGACATGCGTTTAC+AGG 0.303601 1_3:-29206544 Msa0113300:three_prime_UTR
AAACTGTCAACGTATACTTT+AGG 0.304620 1_3:+29211453 None:intergenic
TTGCATGCCATACTTGCATT+AGG 0.305624 1_3:-29208883 Msa0113300:CDS
CTATGTTTGTTACAGGACTA+TGG 0.310232 1_3:+29209989 None:intergenic
CTAAGTGTACATATTCATTA+AGG 0.313022 1_3:+29210601 None:intergenic
GAATACATATACCTTTAAAA+TGG 0.323737 1_3:+29210911 None:intergenic
TTCATCATGTTGTTGTGTTT+GGG 0.325931 1_3:+29207987 None:intergenic
TTTGGTGGCTTGAGCGGATT+TGG 0.332495 1_3:-29207393 Msa0113300:three_prime_UTR
CCTCACTCATCCTCCAAGTT+TGG 0.333782 1_3:-29211910 Msa0113300:five_prime_UTR
TCTCTCAACAGCGAAGAAAA+AGG 0.334650 1_3:-29212051 Msa0113300:five_prime_UTR
CAATATGTAGTTGCCACTTT+AGG 0.335899 1_3:-29206353 Msa0113300:three_prime_UTR
TTTATGATTGTTATAATTAC+GGG 0.337366 1_3:-29211338 Msa0113300:five_prime_UTR
TCAGTGCCACTAGCTATAAT+TGG 0.339150 1_3:+29208150 None:intergenic
TGCATGCCATACTTGCATTA+GGG 0.346393 1_3:-29208882 Msa0113300:CDS
TTTCTACCATTGATGTTGTT+TGG 0.346439 1_3:-29206496 Msa0113300:three_prime_UTR
AATGACCCAAAGGAATAAAA+AGG 0.346566 1_3:+29211938 None:intergenic
TTCTTCCCCTAATGCAAGTA+TGG 0.350341 1_3:+29208876 None:intergenic
CTTAAGGTGGACTGATGATA+TGG 0.352770 1_3:-29207607 Msa0113300:three_prime_UTR
TATGGTATAATTATTGTGTT+AGG 0.354740 1_3:-29206295 Msa0113300:three_prime_UTR
CTTATAAGTTCTTCCCAAAC+TGG 0.355871 1_3:+29207333 None:intergenic
CCACGAGAGAGACACTATAT+TGG 0.363230 1_3:-29210305 Msa0113300:five_prime_UTR
ATGTTACAAGGCATAATTAA+AGG 0.367451 1_3:+29206415 None:intergenic
TACGGCTGAGGAACCAGTTT+GGG 0.367849 1_3:-29207346 Msa0113300:three_prime_UTR
TGATAACGAACTCCTCTATA+TGG 0.368095 1_3:+29208288 None:intergenic
AAAACTTTGAAAGATCGTTT+TGG 0.370453 1_3:-29207432 Msa0113300:three_prime_UTR
AACGTCATTGAGAGAACTTT+TGG 0.372184 1_3:-29208192 Msa0113300:CDS
AAGGTCACTTACACTATGTT+TGG 0.374696 1_3:-29212208 Msa0113300:five_prime_UTR
GAGATTATCCTTTGTAAATT+GGG 0.375445 1_3:-29211620 Msa0113300:five_prime_UTR
TTATTGTGTTAGGCCAACTA+TGG 0.376735 1_3:-29206285 Msa0113300:three_prime_UTR
AACCTTCAGGAATTATTAAA+GGG 0.377913 1_3:+29208465 None:intergenic
TAGTATTTGTGGTGGGATAT+CGG 0.378152 1_3:+29208831 None:intergenic
AGAACAAGTTACATGCATAT+TGG 0.380546 1_3:+29210524 None:intergenic
AAACGAGGGGCTTCTGCCCT+TGG 0.380938 1_3:+29208626 None:intergenic
AAGAGCGTAGCTAGTTAATA+TGG 0.382580 1_3:-29212260 None:intergenic
CATCATGCCTATTCCCTTTG+TGG 0.385222 1_3:+29207550 None:intergenic
TCCGAAGATTCAGTTCAGTA+TGG 0.386490 1_3:-29211143 Msa0113300:five_prime_UTR
CTGCTATTGTTTAGTATTTG+TGG 0.387161 1_3:+29208820 None:intergenic
TTTGGTTGTTATATGGTGTT+TGG 0.390288 1_3:-29209782 Msa0113300:five_prime_UTR
AATCAATTGGATTAGAATGT+TGG 0.395136 1_3:-29211544 Msa0113300:five_prime_UTR
GTAGATGTGACTTGAACTTT+AGG 0.397533 1_3:-29211403 Msa0113300:five_prime_UTR
ACAGGTTCTCTTACAAATGA+TGG 0.400234 1_3:-29206526 Msa0113300:three_prime_UTR
TTCAACAACTAGGAGGTTTA+CGG 0.401340 1_3:-29207364 Msa0113300:three_prime_UTR
GCAAAATTCTTGCATATTGT+AGG 0.403388 1_3:-29208985 Msa0113300:CDS
TTCTAGATAGTTTCAGCCTA+AGG 0.406108 1_3:-29209825 Msa0113300:five_prime_UTR
CACCACATCAAGACTAGATC+TGG 0.408821 1_3:-29211839 Msa0113300:five_prime_UTR
TGCAGGTCCATCACCAAACT+TGG 0.409807 1_3:+29211897 None:intergenic
TTGAAAATGGCAAAGGATAA+AGG 0.413801 1_3:-29207666 Msa0113300:three_prime_UTR
CACAGCTGCATGAATGCTTC+AGG 0.414144 1_3:+29209072 None:intergenic
TTTGATCCTTTGGAGGGAAA+TGG 0.419347 1_3:-29210348 Msa0113300:five_prime_UTR
CAAGTTCATGACATAATTCA+AGG 0.422170 1_3:+29210219 None:intergenic
TTTCAGCCTAAGGGGTTTGA+AGG 0.423969 1_3:-29209815 Msa0113300:five_prime_UTR
GCCTCCACAAAATCATTCAT+TGG 0.424130 1_3:+29206861 None:intergenic
TGCTGTGATTTCCCATATGT+TGG 0.424819 1_3:+29206927 None:intergenic
ATGGAATTTGCATCCATAGA+TGG 0.427094 1_3:+29210948 None:intergenic
GACTCATACAGTCCAACATA+TGG 0.427529 1_3:-29206939 Msa0113300:three_prime_UTR
GGTGGGAGGAGAGGAAGCGC+GGG 0.427545 1_3:+29211959 None:intergenic
GTTGTTGATCTTATATAAAA+GGG 0.432281 1_3:-29211729 Msa0113300:five_prime_UTR
ACCATACTGAACTGAATCTT+CGG 0.436615 1_3:+29211142 None:intergenic
CTATATCAGTGGCATATGTT+AGG 0.438588 1_3:+29209955 None:intergenic
AACGAGGGGCTTCTGCCCTT+GGG 0.438842 1_3:+29208627 None:intergenic
ACCATAAGAAATGCCATAGT+TGG 0.439383 1_3:+29206272 None:intergenic
CACGAGAGAGACACTATATT+GGG 0.440653 1_3:-29210304 Msa0113300:five_prime_UTR
CAGCAATCCATAGGAACATC+TGG 0.441047 1_3:-29206909 Msa0113300:three_prime_UTR
TGACGTCTATGCTCACTTTG+TGG 0.444260 1_3:+29209153 None:intergenic
AAGAGGTCCACAAAGGGAAT+AGG 0.450550 1_3:-29207557 Msa0113300:three_prime_UTR
CTTGAATTATGTCATGAACT+TGG 0.455075 1_3:-29210218 Msa0113300:five_prime_UTR
TTACGGCTGAGGAACCAGTT+TGG 0.457592 1_3:-29207347 Msa0113300:three_prime_UTR
ATGTTGGAGGGATTTCTTTG+TGG 0.465265 1_3:-29211528 Msa0113300:five_prime_UTR
AAAATACTTGCCATGTTACA+AGG 0.470518 1_3:+29206403 None:intergenic
TTCAGCCTAAGGGGTTTGAA+GGG 0.471787 1_3:-29209814 Msa0113300:five_prime_UTR
AGTTTAAAATCACAATTGAA+TGG 0.472726 1_3:-29210757 Msa0113300:five_prime_UTR
GTCATGTAAGTATCATCAGC+TGG 0.473268 1_3:+29207011 None:intergenic
TACTTGTTAAATCGTTAGCT+TGG 0.476214 1_3:-29211033 Msa0113300:five_prime_UTR
CACTTACGTGTTAGCCGGGT+GGG 0.476618 1_3:-29208540 Msa0113300:CDS
GATTGCATTGGAGCTATAGA+TGG 0.476705 1_3:-29208671 Msa0113300:CDS
AACTAGGAGGTTTACGGCTG+AGG 0.477534 1_3:-29207358 Msa0113300:three_prime_UTR
CTGAATTGTACCACAGTCAA+TGG 0.477932 1_3:-29211002 Msa0113300:five_prime_UTR
ATTGAATGGCAAGGATGCTC+AGG 0.479078 1_3:-29210743 Msa0113300:five_prime_UTR
ATCATAATGCTTAACTTGCA+TGG 0.479752 1_3:+29207169 None:intergenic
GTTGGAGAAGGAAAGGGAAA+AGG 0.480190 1_3:-29207072 Msa0113300:three_prime_UTR
TTGGTTGGAGAGAAATAAGA+AGG 0.482021 1_3:-29212189 Msa0113300:five_prime_UTR
TGTATACAGGAGCAGATGTA+TGG 0.482734 1_3:-29206665 Msa0113300:three_prime_UTR
GATAGATCAAGAGAAGTTGC+AGG 0.482833 1_3:+29211880 None:intergenic
TGTCGGGACATCATACGAAT+GGG 0.483003 1_3:-29209096 Msa0113300:CDS
GAAGATGAAATGATTGATGT+TGG 0.483282 1_3:-29209330 Msa0113300:CDS
AATGGAAGCATCATCATCAA+TGG 0.485942 1_3:+29210929 None:intergenic
GGAATGTCTATTCAAATGCT+AGG 0.486540 1_3:-29209309 Msa0113300:CDS
AAATTCACTTACGTGTTAGC+CGG 0.486870 1_3:-29208545 Msa0113300:CDS
TGTAGACCTCGAGTGTATAC+AGG 0.492746 1_3:-29206678 Msa0113300:three_prime_UTR
GATAGAATGACGAGTGGCAT+TGG 0.493232 1_3:-29206831 Msa0113300:three_prime_UTR
AGACATGATCAAATAGCAAA+AGG 0.494951 1_3:+29209653 None:intergenic
CAGCTGTGTCTAAAACTAAG+AGG 0.496642 1_3:-29209057 Msa0113300:CDS
TATGCAAATAAGGCAACCTT+TGG 0.498058 1_3:+29210012 None:intergenic
ATCTGGAAACTACAAATCAT+AGG 0.498111 1_3:-29211822 Msa0113300:five_prime_UTR
CCGACTAGGATCGCTTCTTA+GGG 0.499781 1_3:-29207959 Msa0113300:CDS
TTTGATTCAAATACAATGCA+TGG 0.500520 1_3:+29209214 None:intergenic
GAAACTACAAATCATAGGTA+TGG 0.500805 1_3:-29211817 Msa0113300:five_prime_UTR
ATTGAATGCTTTGATGGAAG+AGG 0.501757 1_3:-29207574 Msa0113300:three_prime_UTR
ATGGAATATGCTTGATGAGT+TGG 0.501804 1_3:-29206646 Msa0113300:three_prime_UTR
TTTGGGGAAGACCGAGCAGC+GGG 0.506138 1_3:-29207131 Msa0113300:three_prime_UTR
GAATTTATAGTCCAACCATC+AGG 0.506876 1_3:-29208856 Msa0113300:CDS
TCGAAGGTTGAATAACTCTC+GGG 0.508448 1_3:+29208230 None:intergenic
ATGGAAAGGAGGAAACATAT+TGG 0.509105 1_3:-29209264 Msa0113300:CDS
AATAATAGATGAAGTGGACT+TGG 0.510368 1_3:-29209355 Msa0113300:CDS
TTCTAGGAAAGGCTAAAATG+AGG 0.510742 1_3:+29211212 None:intergenic
CATATGCCACTGATATAGCT+TGG 0.513444 1_3:-29209950 Msa0113300:five_prime_UTR
GTCGAAGGTTGAATAACTCT+CGG 0.514941 1_3:+29208229 None:intergenic
TCTAGATAGTTTCAGCCTAA+GGG 0.515613 1_3:-29209824 Msa0113300:five_prime_UTR
AGGTGGGAGGAGAGGAAGCG+CGG 0.515767 1_3:+29211958 None:intergenic
CTACTGTCAATTGCCTAAAG+TGG 0.518019 1_3:+29206340 None:intergenic
GATCTATTTGGTGGCTTGAG+CGG 0.518366 1_3:-29207399 Msa0113300:three_prime_UTR
TTAATGTAACAATTTACTCT+CGG 0.519814 1_3:+29211237 None:intergenic
GCGAGAACCAGATGTTCCTA+TGG 0.520724 1_3:+29206902 None:intergenic
AAGCTACTAAGGACGTCTTA+AGG 0.522163 1_3:-29207623 Msa0113300:three_prime_UTR
CCAAAACTAGATGCCAAAAG+AGG 0.522665 1_3:+29209851 None:intergenic
TGTCTAAAACTAAGAGGTAC+GGG 0.523672 1_3:-29209051 Msa0113300:CDS
TTTAATTATGCCTTGTAACA+TGG 0.525070 1_3:-29206413 Msa0113300:three_prime_UTR
CCACAGTTTGATCCTTTGGA+GGG 0.525991 1_3:-29210354 Msa0113300:five_prime_UTR
CAATAACGAAAGTTAAAACC+AGG 0.526440 1_3:+29210247 None:intergenic
ACTGAAATGTGGAACCTGTA+TGG 0.528593 1_3:-29207925 Msa0113300:CDS
AGAACCTAGACAAGCTACTA+AGG 0.529941 1_3:-29207634 Msa0113300:three_prime_UTR
TTGAGAGTGTCATATTGTTG+TGG 0.530137 1_3:-29209433 Msa0113300:five_prime_UTR
TCACTTACACTATGTTTGGT+TGG 0.530219 1_3:-29212204 Msa0113300:five_prime_UTR
AAGATACCAAACAACATCAA+TGG 0.532219 1_3:+29206490 None:intergenic
CTTGCTGATATACTTGATGA+AGG 0.532431 1_3:-29206981 Msa0113300:three_prime_UTR
TTGAAGAATCGAGAATTGAA+AGG 0.535022 1_3:-29210138 Msa0113300:five_prime_UTR
GTGTCTAAAACTAAGAGGTA+CGG 0.537028 1_3:-29209052 Msa0113300:CDS
AACTACATTAAGCTCCATAC+AGG 0.537498 1_3:+29207911 None:intergenic
CTATGTATCTGTCATTCATA+CGG 0.538994 1_3:-29209751 Msa0113300:five_prime_UTR
AAGAGAGAAGACTGCAGCGT+GGG 0.539887 1_3:-29212095 Msa0113300:five_prime_UTR
CAGCCTAAGGGGTTTGAAGG+GGG 0.540340 1_3:-29209812 Msa0113300:five_prime_UTR
AATTGAAATAATAGATGAAG+TGG 0.540512 1_3:-29209361 Msa0113300:CDS
GACGAGTGGCATTGGACTCA+TGG 0.542017 1_3:-29206823 Msa0113300:three_prime_UTR
ACAATCAGTTGGAGAAGGAA+AGG 0.542959 1_3:-29207079 Msa0113300:three_prime_UTR
TCCACAGTTTGATCCTTTGG+AGG 0.544391 1_3:-29210355 Msa0113300:five_prime_UTR
ATGCATGTAACTTGTTCTCA+AGG 0.545220 1_3:-29210519 Msa0113300:five_prime_UTR
GTGGCTTGAGCGGATTTGGA+TGG 0.545278 1_3:-29207389 Msa0113300:three_prime_UTR
AAAATCACAATTGAATGGCA+AGG 0.545680 1_3:-29210752 Msa0113300:five_prime_UTR
TTCCAGATCTAGTCTTGATG+TGG 0.545939 1_3:+29211837 None:intergenic
AATTCACTTACGTGTTAGCC+GGG 0.546524 1_3:-29208544 Msa0113300:CDS
TAAGCATTATGATGTTCTGA+AGG 0.547520 1_3:-29207159 Msa0113300:three_prime_UTR
TCATCCTCCAAGTTTGGTGA+TGG 0.548237 1_3:-29211904 Msa0113300:five_prime_UTR
ACGTCCTTAGTAGCTTGTCT+AGG 0.548560 1_3:+29207630 None:intergenic
GGATATCGGCACCTGATGGT+TGG 0.548661 1_3:+29208845 None:intergenic
CAATTGGATTAGAATGTTGG+AGG 0.549008 1_3:-29211541 Msa0113300:five_prime_UTR
CAATCAGTTGGAGAAGGAAA+GGG 0.549805 1_3:-29207078 Msa0113300:three_prime_UTR
CGTAGCTAGTTAATATGGTA+CGG 0.550942 1_3:-29212255 None:intergenic
ATGCTCACTTTGTGGAGAGT+AGG 0.550974 1_3:+29209161 None:intergenic
TAAAATGAGACACAATCAGT+TGG 0.551034 1_3:-29207090 Msa0113300:three_prime_UTR
ACTCATACAGTCCAACATAT+GGG 0.551310 1_3:-29206938 Msa0113300:three_prime_UTR
GACCCTTTAATAATTCCTGA+AGG 0.553305 1_3:-29208467 Msa0113300:intron
GGGTTACTAACTCCATATAG+AGG 0.553737 1_3:-29208300 Msa0113300:CDS
AAATTCAAAATTTCTAGGAA+AGG 0.553868 1_3:+29211201 None:intergenic
ATGTTGCCTTTGCTTTATTG+AGG 0.554736 1_3:-29210882 Msa0113300:five_prime_UTR
AAGAGGTACGGGTATAGTAA+AGG 0.555417 1_3:-29209040 Msa0113300:CDS
CTATGAAATAAGGATTGCAT+TGG 0.556238 1_3:-29208683 Msa0113300:intron
GTCTACTGTAGAAGAGCAAG+TGG 0.558463 1_3:-29209007 Msa0113300:CDS
TGATGGAAGAGGTCCACAAA+GGG 0.560951 1_3:-29207563 Msa0113300:three_prime_UTR
TACAGAAACAAAACAAGGGA+GGG 0.561075 1_3:+29209688 None:intergenic
GTGTCGGGACATCATACGAA+TGG 0.561288 1_3:-29209097 Msa0113300:CDS
ACCTTCGACACTCTTCACTT+CGG 0.561876 1_3:-29208215 Msa0113300:CDS
CGGGATTTATGCTTAAACAA+GGG 0.562360 1_3:-29208320 Msa0113300:CDS
CTATTGTTTAGTATTTGTGG+TGG 0.564348 1_3:+29208823 None:intergenic
AATTGGATTAGAATGTTGGA+GGG 0.564478 1_3:-29211540 Msa0113300:five_prime_UTR
TAAAACCACATGCTGCTAAG+TGG 0.566316 1_3:-29207196 Msa0113300:three_prime_UTR
GCATGCCATACTTGCATTAG+GGG 0.567900 1_3:-29208881 Msa0113300:CDS
AGATTTCCAATTATAGCTAG+TGG 0.571282 1_3:-29208156 Msa0113300:CDS
TATTGTTTAGTATTTGTGGT+GGG 0.571530 1_3:+29208824 None:intergenic
TTGAAAGAGTATTCCTCTCG+TGG 0.572856 1_3:-29208264 Msa0113300:CDS
GATCATGTCTTGTGTTCATG+AGG 0.574647 1_3:-29209640 Msa0113300:five_prime_UTR
TACGTGTTAGCCGGGTGGGA+AGG 0.575936 1_3:-29208536 Msa0113300:CDS
CATGATGAAGACTACCGACT+AGG 0.577345 1_3:-29207973 Msa0113300:CDS
CACAAAGGGAATAGGCATGA+TGG 0.577973 1_3:-29207549 Msa0113300:three_prime_UTR
GGGAAATCACAGCAATCCAT+AGG 0.578941 1_3:-29206918 Msa0113300:three_prime_UTR
ACCTGTAAACGCATGTCAGT+GGG 0.580002 1_3:+29206543 None:intergenic
GCGGGATTTATGCTTAAACA+AGG 0.582707 1_3:-29208321 Msa0113300:CDS
TCAGCCTAAGGGGTTTGAAG+GGG 0.582782 1_3:-29209813 Msa0113300:five_prime_UTR
TGACAAACACACCACATCCA+TGG 0.582991 1_3:+29211697 None:intergenic
TTGGATGGAATTCAACAACT+AGG 0.583860 1_3:-29207374 Msa0113300:three_prime_UTR
GACGAACCATTTCCCTCCAA+AGG 0.584623 1_3:+29210342 None:intergenic
TTATAGGTTGAAAATGGCAA+AGG 0.585661 1_3:-29207673 Msa0113300:three_prime_UTR
ATTTAAATGAATTGTAACAA+AGG 0.586136 1_3:+29210052 None:intergenic
CTAGATAGTTTCAGCCTAAG+GGG 0.586844 1_3:-29209823 Msa0113300:five_prime_UTR
CATTTCAACCCAATTTACAA+AGG 0.590883 1_3:+29211612 None:intergenic
GGTGTTGTAGAGATCTAAGA+AGG 0.590894 1_3:+29211858 None:intergenic
CAACAATATGACACTCTCAA+AGG 0.591002 1_3:+29209436 None:intergenic
CCCTAAGAAGCGATCCTAGT+CGG 0.592042 1_3:+29207959 None:intergenic
GAGACACAATCAGTTGGAGA+AGG 0.594765 1_3:-29207084 Msa0113300:three_prime_UTR
ACATTCGAGTGAAGGTCCCA+AGG 0.594966 1_3:-29208643 Msa0113300:CDS
TTCTCGCGGAACAAAGCGTA+AGG 0.595584 1_3:-29206886 Msa0113300:three_prime_UTR
GAAGCATATGATCTATTTGG+TGG 0.596948 1_3:-29207408 Msa0113300:three_prime_UTR
AGTGCACACAGATAAGTGTC+GGG 0.599113 1_3:-29209112 Msa0113300:CDS
AGATGTTGTTCCTTCCCACC+CGG 0.602796 1_3:+29208526 None:intergenic
TCCGAAGTGAAGAGTGTCGA+AGG 0.603229 1_3:+29208214 None:intergenic
CATCAAGTATATCAGCAAGC+TGG 0.603604 1_3:+29206985 None:intergenic
TAGTGCACACAGATAAGTGT+CGG 0.605090 1_3:-29209113 Msa0113300:CDS
AACCTGTAAACGCATGTCAG+TGG 0.607127 1_3:+29206542 None:intergenic
TGAGGAAGATAATGACCCAA+AGG 0.608100 1_3:+29211928 None:intergenic
ATATGTAATGAGGACACATC+TGG 0.611084 1_3:-29206440 Msa0113300:three_prime_UTR
ATGGCTGATGCGTTGAACAA+AGG 0.612392 1_3:-29206804 Msa0113300:three_prime_UTR
ACAGAAACAAAACAAGGGAG+GGG 0.612559 1_3:+29209689 None:intergenic
TCATGTAAGTATCATCAGCT+GGG 0.614286 1_3:+29207012 None:intergenic
GGACTGTATGAGTCAACAAT+GGG 0.614523 1_3:+29206948 None:intergenic
TTGCTCATTTGTGCTACATG+TGG 0.617346 1_3:-29209463 Msa0113300:five_prime_UTR
TGAAAGAGTATTCCTCTCGT+GGG 0.617564 1_3:-29208263 Msa0113300:CDS
AGGTCCATCACCAAACTTGG+AGG 0.619724 1_3:+29211900 None:intergenic
GGATGCTCAGGAAATATATG+TGG 0.621118 1_3:-29210731 Msa0113300:five_prime_UTR
TGGCACACACATTCGAGTGA+AGG 0.621290 1_3:-29208651 Msa0113300:CDS
AGAGTGTCATATTGTTGTGG+AGG 0.623485 1_3:-29209430 Msa0113300:five_prime_UTR
AATTAATGTGATATGCATTG+TGG 0.623664 1_3:-29207725 Msa0113300:three_prime_UTR
TGCAAGTATGGCATGCAACA+CGG 0.624083 1_3:+29208888 None:intergenic
AAGCTATTACAACTGAAATG+TGG 0.624802 1_3:-29207936 Msa0113300:CDS
GGTGGGATATCGGCACCTGA+TGG 0.626883 1_3:+29208841 None:intergenic
CTACTAAGGACGTCTTAAGG+TGG 0.626964 1_3:-29207620 Msa0113300:three_prime_UTR
CATTCGAGTGAAGGTCCCAA+GGG 0.627188 1_3:-29208642 Msa0113300:CDS
TAAAAGGGCATGCAGTACCA+TGG 0.627754 1_3:-29211714 Msa0113300:five_prime_UTR
TTGCTGATATACTTGATGAA+GGG 0.628124 1_3:-29206980 Msa0113300:three_prime_UTR
TAGCACTTGAAACGAAATTG+TGG 0.628736 1_3:+29206615 None:intergenic
ACTGTCAACGTATACTTTAG+GGG 0.629430 1_3:+29211455 None:intergenic
TGCTCATTTGTGCTACATGT+GGG 0.632800 1_3:-29209462 Msa0113300:five_prime_UTR
CCAATATAGTGTCTCTCTCG+TGG 0.633680 1_3:+29210305 None:intergenic
TCACTTACGTGTTAGCCGGG+TGG 0.637458 1_3:-29208541 Msa0113300:CDS
GATGGAATTCAACAACTAGG+AGG 0.638082 1_3:-29207371 Msa0113300:three_prime_UTR
GGCATGCAGTACCATGGATG+TGG 0.648950 1_3:-29211708 Msa0113300:five_prime_UTR
ATAGGAACATCTGGTTCTCG+CGG 0.649638 1_3:-29206900 Msa0113300:three_prime_UTR
AAACTGCCTCAATAAAGCAA+AGG 0.653650 1_3:+29210876 None:intergenic
CCAAACTTGGAGGATGAGTG+AGG 0.653884 1_3:+29211910 None:intergenic
GTACAGAAACAAAACAAGGG+AGG 0.654569 1_3:+29209687 None:intergenic
TTGATGGAAGAGGTCCACAA+AGG 0.657995 1_3:-29207564 Msa0113300:three_prime_UTR
AATAGTACAGAAACAAAACA+AGG 0.663120 1_3:+29209683 None:intergenic
CCCTCCAAAGGATCAAACTG+TGG 0.664200 1_3:+29210354 None:intergenic
GAAGAGAGAAGACTGCAGCG+TGG 0.666341 1_3:-29212096 Msa0113300:five_prime_UTR
ATTACTTCAAGTGAATAATG+CGG 0.666923 1_3:+29208126 None:intergenic
TGGACTGTATGAGTCAACAA+TGG 0.667564 1_3:+29206947 None:intergenic
CGAAGGTTGAATAACTCTCG+GGG 0.668950 1_3:+29208231 None:intergenic
TGATGAAGCACTAATTGCTG+AGG 0.680304 1_3:-29208046 Msa0113300:CDS
TATAGTCCAAGCTATATCAG+TGG 0.681278 1_3:+29209944 None:intergenic
AAGATCTAAACAAAACACAA+TGG 0.684613 1_3:+29209897 None:intergenic
TACATCAAAACATTAGAACA+AGG 0.685292 1_3:+29211423 None:intergenic
GTCGGGACATCATACGAATG+GGG 0.688822 1_3:-29209095 Msa0113300:CDS
CAATTGGATAGAATGACGAG+TGG 0.698679 1_3:-29206837 Msa0113300:three_prime_UTR
ATAGTACAGAAACAAAACAA+GGG 0.699034 1_3:+29209684 None:intergenic
TCTGCTCCTGTATACACTCG+AGG 0.699341 1_3:+29206672 None:intergenic
TGTGATTATACCATTGACTG+TGG 0.747584 1_3:+29210992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_3:29212198-29212217 Msa0113300:five_prime_UTR 0.0%
!!! TTTTATGATTGTTATAATTA+CGG - chr1_3:29207172-29207191 Msa0113300:three_prime_UTR 10.0%
!!! ATTGTTTTTTGTTTAATTTA+TGG - chr1_3:29207842-29207861 Msa0113300:three_prime_UTR 10.0%
!! TTTATGATTGTTATAATTAC+GGG - chr1_3:29207173-29207192 Msa0113300:three_prime_UTR 15.0%
!! ATGTAAAATTCAAAATTTCT+AGG + chr1_3:29207318-29207337 None:intergenic 15.0%
!!! TTGCTTATATTTTTTAAAAC+TGG - chr1_3:29208336-29208355 Msa0113300:CDS 15.0%
!! ATTTAAATGAATTGTAACAA+AGG + chr1_3:29208462-29208481 None:intergenic 15.0%
!!! TTTATAACTTTGTTTTCAAT+GGG - chr1_3:29208794-29208813 Msa0113300:intron 15.0%
!!! ATGCTGTTAAAAAATTTTTT+TGG - chr1_3:29208907-29208926 Msa0113300:CDS 15.0%
!!! TGCTGTTAAAAAATTTTTTT+GGG - chr1_3:29208908-29208927 Msa0113300:CDS 15.0%
!!! GTACCATTATTTTTTTTTTA+AGG - chr1_3:29209733-29209752 Msa0113300:five_prime_UTR 15.0%
!! ATGCCTTAAAAAAAAAATAA+TGG + chr1_3:29209739-29209758 None:intergenic 15.0%
!!! TATACTTCATAACTTTTTAA+TGG - chr1_3:29210432-29210451 Msa0113300:five_prime_UTR 15.0%
!!! ATACTTCATAACTTTTTAAT+GGG - chr1_3:29210433-29210452 Msa0113300:five_prime_UTR 15.0%
!! TGTTTCAATTGATAAATATT+TGG - chr1_3:29210723-29210742 Msa0113300:five_prime_UTR 15.0%
!! TTTGTTTCATTTATTAATTG+TGG - chr1_3:29211211-29211230 Msa0113300:five_prime_UTR 15.0%
!! TGTTGTTGATCTTATATAAA+AGG - chr1_3:29206781-29206800 Msa0113300:three_prime_UTR 20.0%
!! GTTGTTGATCTTATATAAAA+GGG - chr1_3:29206782-29206801 Msa0113300:three_prime_UTR 20.0%
!!! GTTCAATTTTAAGAATCAAT+TGG - chr1_3:29206954-29206973 Msa0113300:three_prime_UTR 20.0%
!! TTAATGTAACAATTTACTCT+CGG + chr1_3:29207277-29207296 None:intergenic 20.0%
!!! AAATTCAAAATTTCTAGGAA+AGG + chr1_3:29207313-29207332 None:intergenic 20.0%
!!! GAATACATATACCTTTAAAA+TGG + chr1_3:29207603-29207622 None:intergenic 20.0%
!!! AGTTTAAAATCACAATTGAA+TGG - chr1_3:29207754-29207773 Msa0113300:three_prime_UTR 20.0%
!!! TCTCTGTTTTTCAAAATAAA+GGG + chr1_3:29208024-29208043 None:intergenic 20.0%
!!! TTCTCTGTTTTTCAAAATAA+AGG + chr1_3:29208025-29208044 None:intergenic 20.0%
!! TGGTGTTCAATTTATAATTA+AGG + chr1_3:29208597-29208616 None:intergenic 20.0%
!!! GTTTATAACTTTGTTTTCAA+TGG - chr1_3:29208793-29208812 Msa0113300:intron 20.0%
!!! TTTTGTTTCTGTACTATTTT+TGG - chr1_3:29208833-29208852 Msa0113300:CDS 20.0%
!! TTAACAGCATAGATTTATTA+AGG + chr1_3:29208897-29208916 None:intergenic 20.0%
!! AATTGAAATAATAGATGAAG+TGG - chr1_3:29209150-29209169 Msa0113300:CDS 20.0%
!!! CAGATTTTATCCATTTTTTA+AGG - chr1_3:29209711-29209730 Msa0113300:five_prime_UTR 20.0%
!! AATAATGGTACCTTAAAAAA+TGG + chr1_3:29209724-29209743 None:intergenic 20.0%
!! ATGATTTAGTTAGTTGTATA+GGG + chr1_3:29209808-29209827 None:intergenic 20.0%
!! ACTAAATCATCTATGAAATA+AGG - chr1_3:29209818-29209837 Msa0113300:five_prime_UTR 20.0%
!!! CATGAGATAATGTATTTTAT+TGG - chr1_3:29210627-29210646 Msa0113300:five_prime_UTR 20.0%
!! TTGAAACTAAATGCATTTAT+AGG - chr1_3:29210822-29210841 Msa0113300:five_prime_UTR 20.0%
!! AATATTATTGAATGCTTTGA+TGG - chr1_3:29210931-29210950 Msa0113300:five_prime_UTR 20.0%
!!! TTTTATGTGTTGTTTTGTTA+GGG + chr1_3:29211050-29211069 None:intergenic 20.0%
!!! TTTTTATGTGTTGTTTTGTT+AGG + chr1_3:29211051-29211070 None:intergenic 20.0%
!!! ATTTCTAGGAAATAAAATGA+AGG + chr1_3:29211240-29211259 None:intergenic 20.0%
!! TATGGTATAATTATTGTGTT+AGG - chr1_3:29212216-29212235 Msa0113300:five_prime_UTR 20.0%
!! GATACTGAATTTCTTTTGTT+TGG - chr1_3:29206376-29206395 Msa0113300:three_prime_UTR 25.0%
! TGAGATTATCCTTTGTAAAT+TGG - chr1_3:29206890-29206909 Msa0113300:three_prime_UTR 25.0%
! GAGATTATCCTTTGTAAATT+GGG - chr1_3:29206891-29206910 Msa0113300:three_prime_UTR 25.0%
!! AATCAATTGGATTAGAATGT+TGG - chr1_3:29206967-29206986 Msa0113300:three_prime_UTR 25.0%
! TACATCAAAACATTAGAACA+AGG + chr1_3:29207091-29207110 None:intergenic 25.0%
!! TTTTACATTACACAGTTTTG+TGG - chr1_3:29207330-29207349 Msa0113300:intron 25.0%
!! AAATGAGCTTCAAGTATTTT+AGG + chr1_3:29207688-29207707 None:intergenic 25.0%
! CTAAGTGTACATATTCATTA+AGG + chr1_3:29207913-29207932 None:intergenic 25.0%
!! ACTGGATGATGAATTAATTT+TGG - chr1_3:29208048-29208067 Msa0113300:CDS 25.0%
! TATAAAAACTTAACAGAACC+TGG - chr1_3:29208246-29208265 Msa0113300:CDS 25.0%
! AAGATCTAAACAAAACACAA+TGG + chr1_3:29208617-29208636 None:intergenic 25.0%
! CTAACAACATGAAGAAAAAA+AGG + chr1_3:29208640-29208659 None:intergenic 25.0%
! ATAGTACAGAAACAAAACAA+GGG + chr1_3:29208830-29208849 None:intergenic 25.0%
! AATAGTACAGAAACAAAACA+AGG + chr1_3:29208831-29208850 None:intergenic 25.0%
! AAATCATGCTAAAAAAGAGA+TGG - chr1_3:29209228-29209247 Msa0113300:CDS 25.0%
! TTTGATTCAAATACAATGCA+TGG + chr1_3:29209300-29209319 None:intergenic 25.0%
!! ATCTTTCTTCTTTTATCGTT+CGG - chr1_3:29209573-29209592 Msa0113300:five_prime_UTR 25.0%
! TATTGTTTAGTATTTGTGGT+GGG + chr1_3:29209690-29209709 None:intergenic 25.0%
! TTGTATAGGGATATACTTAA+AGG + chr1_3:29209795-29209814 None:intergenic 25.0%
! GATGATTTAGTTAGTTGTAT+AGG + chr1_3:29209809-29209828 None:intergenic 25.0%
! AACCTTCAGGAATTATTAAA+GGG + chr1_3:29210049-29210068 None:intergenic 25.0%
! TAACCTTCAGGAATTATTAA+AGG + chr1_3:29210050-29210069 None:intergenic 25.0%
!!! TTTGTAGGAAAGTTTTATCT+CGG - chr1_3:29210163-29210182 Msa0113300:five_prime_UTR 25.0%
! ATTACTTCAAGTGAATAATG+CGG + chr1_3:29210388-29210407 None:intergenic 25.0%
! AATTAATGTGATATGCATTG+TGG - chr1_3:29210786-29210805 Msa0113300:five_prime_UTR 25.0%
!! ATGCATTTATAGGTTGAAAA+TGG - chr1_3:29210832-29210851 Msa0113300:five_prime_UTR 25.0%
!!! AAAACTTTGAAAGATCGTTT+TGG - chr1_3:29211079-29211098 Msa0113300:five_prime_UTR 25.0%
!! TCTTTTGTGTATATGTAATG+AGG - chr1_3:29212061-29212080 Msa0113300:five_prime_UTR 25.0%
! ATGTTACAAGGCATAATTAA+AGG + chr1_3:29212099-29212118 None:intergenic 25.0%
! TTTAATTATGCCTTGTAACA+TGG - chr1_3:29212098-29212117 Msa0113300:five_prime_UTR 25.0%
!! AGAAGAAAGAGATTTTGAGT+GGG + chr1_3:29206443-29206462 None:intergenic 30.0%
AAAAAGAAAAGGGCAAAAGA+GGG + chr1_3:29206514-29206533 None:intergenic 30.0%
AATGACCCAAAGGAATAAAA+AGG + chr1_3:29206576-29206595 None:intergenic 30.0%
ATCTGGAAACTACAAATCAT+AGG - chr1_3:29206689-29206708 Msa0113300:three_prime_UTR 30.0%
GAAACTACAAATCATAGGTA+TGG - chr1_3:29206694-29206713 Msa0113300:three_prime_UTR 30.0%
CATTTCAACCCAATTTACAA+AGG + chr1_3:29206902-29206921 None:intergenic 30.0%
! AATTGGATTAGAATGTTGGA+GGG - chr1_3:29206971-29206990 Msa0113300:three_prime_UTR 30.0%
!!! TTTTTGAGTCATTCGAATCT+AGG + chr1_3:29207020-29207039 None:intergenic 30.0%
AACTGTCAACGTATACTTTA+GGG + chr1_3:29207060-29207079 None:intergenic 30.0%
AAACTGTCAACGTATACTTT+AGG + chr1_3:29207061-29207080 None:intergenic 30.0%
! TGATTTCTTTTTCTTGAGCT+TGG - chr1_3:29207224-29207243 Msa0113300:intron 30.0%
! TACTTGTTAAATCGTTAGCT+TGG - chr1_3:29207478-29207497 Msa0113300:three_prime_UTR 30.0%
!! TGATGATGCTTCCATTTTAA+AGG - chr1_3:29207589-29207608 Msa0113300:three_prime_UTR 30.0%
!! AAGTATTTTAGGCTGAAGTA+TGG + chr1_3:29207677-29207696 None:intergenic 30.0%
TGCTTCAGATATTGACAAAA+TGG + chr1_3:29207730-29207749 None:intergenic 30.0%
AAAATCACAATTGAATGGCA+AGG - chr1_3:29207759-29207778 Msa0113300:three_prime_UTR 30.0%
AGAACAAGTTACATGCATAT+TGG + chr1_3:29207990-29208009 None:intergenic 30.0%
TTGAAAAACAGAGAAAACAC+TGG - chr1_3:29208030-29208049 Msa0113300:CDS 30.0%
CAATAACGAAAGTTAAAACC+AGG + chr1_3:29208267-29208286 None:intergenic 30.0%
CAAGTTCATGACATAATTCA+AGG + chr1_3:29208295-29208314 None:intergenic 30.0%
CTTGAATTATGTCATGAACT+TGG - chr1_3:29208293-29208312 Msa0113300:CDS 30.0%
TTGAAGAATCGAGAATTGAA+AGG - chr1_3:29208373-29208392 Msa0113300:intron 30.0%
! GTATCAAAATTTTGAGCCAA+AGG - chr1_3:29208483-29208502 Msa0113300:CDS 30.0%
TTTGGTTGTTATATGGTGTT+TGG - chr1_3:29208729-29208748 Msa0113300:intron 30.0%
CTATGTATCTGTCATTCATA+CGG - chr1_3:29208760-29208779 Msa0113300:intron 30.0%
AGACATGATCAAATAGCAAA+AGG + chr1_3:29208861-29208880 None:intergenic 30.0%
CCAATACAGAGTAGATAAAA+AGG + chr1_3:29209015-29209034 None:intergenic 30.0%
! CCTTTTTATCTACTCTGTAT+TGG - chr1_3:29209012-29209031 Msa0113300:CDS 30.0%
! AATAATAGATGAAGTGGACT+TGG - chr1_3:29209156-29209175 Msa0113300:CDS 30.0%
GAAGATGAAATGATTGATGT+TGG - chr1_3:29209181-29209200 Msa0113300:CDS 30.0%
ATGCTAAAAAAGAGATGGAA+AGG - chr1_3:29209233-29209252 Msa0113300:CDS 30.0%
GCAAAATTCTTGCATATTGT+AGG - chr1_3:29209526-29209545 Msa0113300:five_prime_UTR 30.0%
! TCTTTCTTCTTTTATCGTTC+GGG - chr1_3:29209574-29209593 Msa0113300:five_prime_UTR 30.0%
CTATTGTTTAGTATTTGTGG+TGG + chr1_3:29209691-29209710 None:intergenic 30.0%
CTGCTATTGTTTAGTATTTG+TGG + chr1_3:29209694-29209713 None:intergenic 30.0%
CTATGAAATAAGGATTGCAT+TGG - chr1_3:29209828-29209847 Msa0113300:five_prime_UTR 30.0%
TAATAATTCCTGAAGGTTAG+TGG - chr1_3:29210051-29210070 Msa0113300:five_prime_UTR 30.0%
!! TTGTAGGAAAGTTTTATCTC+GGG - chr1_3:29210164-29210183 Msa0113300:five_prime_UTR 30.0%
AGATTTCCAATTATAGCTAG+TGG - chr1_3:29210355-29210374 Msa0113300:five_prime_UTR 30.0%
! TCATAACTTTTTAATGGGAG+TGG - chr1_3:29210438-29210457 Msa0113300:five_prime_UTR 30.0%
TTCATCATGTTGTTGTGTTT+GGG + chr1_3:29210527-29210546 None:intergenic 30.0%
AAGCTATTACAACTGAAATG+TGG - chr1_3:29210575-29210594 Msa0113300:five_prime_UTR 30.0%
! TTATAGGTTGAAAATGGCAA+AGG - chr1_3:29210838-29210857 Msa0113300:five_prime_UTR 30.0%
TTGAAAATGGCAAAGGATAA+AGG - chr1_3:29210845-29210864 Msa0113300:five_prime_UTR 30.0%
!! ATCATAATGCTTAACTTGCA+TGG + chr1_3:29211345-29211364 None:intergenic 30.0%
TAAGCATTATGATGTTCTGA+AGG - chr1_3:29211352-29211371 Msa0113300:five_prime_UTR 30.0%
!!! ATGTTCTGAAGGTTCTTTTT+GGG - chr1_3:29211363-29211382 Msa0113300:five_prime_UTR 30.0%
TAAAATGAGACACAATCAGT+TGG - chr1_3:29211421-29211440 Msa0113300:five_prime_UTR 30.0%
TTGCTGATATACTTGATGAA+GGG - chr1_3:29211531-29211550 Msa0113300:five_prime_UTR 30.0%
TTCTGATCAATTGCATGATA+TGG - chr1_3:29211739-29211758 Msa0113300:five_prime_UTR 30.0%
TTGCAATGATAGCAAAAAGA+AGG - chr1_3:29211928-29211947 Msa0113300:five_prime_UTR 30.0%
!! AAAAAGAAGGAGCTGATTTT+TGG - chr1_3:29211941-29211960 Msa0113300:five_prime_UTR 30.0%
TTTCTACCATTGATGTTGTT+TGG - chr1_3:29212015-29212034 Msa0113300:five_prime_UTR 30.0%
AAGATACCAAACAACATCAA+TGG + chr1_3:29212024-29212043 None:intergenic 30.0%
AAAATACTTGCCATGTTACA+AGG + chr1_3:29212111-29212130 None:intergenic 30.0%
!!! AGTATTTTGAAACATGCAGT+AGG - chr1_3:29212123-29212142 Msa0113300:five_prime_UTR 30.0%
!!! GTATTTTGAAACATGCAGTA+GGG - chr1_3:29212124-29212143 Msa0113300:five_prime_UTR 30.0%
!!! AACCGTTTTAAGAGGTGAAA+AGG - chr1_3:29206284-29206303 Msa0113300:three_prime_UTR 35.0%
! GACCTTTTCACCTCTTAAAA+CGG + chr1_3:29206289-29206308 None:intergenic 35.0%
AAGGTCACTTACACTATGTT+TGG - chr1_3:29206303-29206322 Msa0113300:three_prime_UTR 35.0%
TCACTTACACTATGTTTGGT+TGG - chr1_3:29206307-29206326 Msa0113300:three_prime_UTR 35.0%
TTGGTTGGAGAGAAATAAGA+AGG - chr1_3:29206322-29206341 Msa0113300:three_prime_UTR 35.0%
!! GAAGAAAGAGATTTTGAGTG+GGG + chr1_3:29206442-29206461 None:intergenic 35.0%
! GAGAAGAAAGAGATTTTGAG+TGG + chr1_3:29206444-29206463 None:intergenic 35.0%
GAAAAAGGAGAGAAATACAC+TGG - chr1_3:29206475-29206494 Msa0113300:three_prime_UTR 35.0%
CAAAAAGAAAAGGGCAAAAG+AGG + chr1_3:29206515-29206534 None:intergenic 35.0%
! CTCTTTTGCCCTTTTCTTTT+TGG - chr1_3:29206513-29206532 Msa0113300:three_prime_UTR 35.0%
CGCGAAAACCAAAAAGAAAA+GGG + chr1_3:29206524-29206543 None:intergenic 35.0%
!!! CCTTTTCTTTTTGGTTTTCG+CGG - chr1_3:29206522-29206541 Msa0113300:three_prime_UTR 35.0%
! TCCCACCTTTTTATTCCTTT+GGG - chr1_3:29206568-29206587 Msa0113300:three_prime_UTR 35.0%
ACCCAAAGGAATAAAAAGGT+GGG + chr1_3:29206572-29206591 None:intergenic 35.0%
! CAATTGGATTAGAATGTTGG+AGG - chr1_3:29206970-29206989 Msa0113300:three_prime_UTR 35.0%
ACTGTCAACGTATACTTTAG+GGG + chr1_3:29207059-29207078 None:intergenic 35.0%
GTAGATGTGACTTGAACTTT+AGG - chr1_3:29207108-29207127 Msa0113300:three_prime_UTR 35.0%
! TTCTAGGAAAGGCTAAAATG+AGG + chr1_3:29207302-29207321 None:intergenic 35.0%
ACCATACTGAACTGAATCTT+CGG + chr1_3:29207372-29207391 None:intergenic 35.0%
! TGTGATTATACCATTGACTG+TGG + chr1_3:29207522-29207541 None:intergenic 35.0%
ATGGAATTTGCATCCATAGA+TGG + chr1_3:29207566-29207585 None:intergenic 35.0%
!! AATGGAAGCATCATCATCAA+TGG + chr1_3:29207585-29207604 None:intergenic 35.0%
! ATGTTGCCTTTGCTTTATTG+AGG - chr1_3:29207629-29207648 Msa0113300:three_prime_UTR 35.0%
AAACTGCCTCAATAAAGCAA+AGG + chr1_3:29207638-29207657 None:intergenic 35.0%
!! ATGCATGTAACTTGTTCTCA+AGG - chr1_3:29207992-29208011 Msa0113300:CDS 35.0%
!!! CTTTTTTATTCTCTGCACGA+AGG - chr1_3:29208082-29208101 Msa0113300:CDS 35.0%
AAATCCACAGTTTGATCCTT+TGG - chr1_3:29208153-29208172 Msa0113300:CDS 35.0%
TATGCAAATAAGGCAACCTT+TGG + chr1_3:29208502-29208521 None:intergenic 35.0%
AGGACTATGGTATGCAAATA+AGG + chr1_3:29208512-29208531 None:intergenic 35.0%
! CTATGTTTGTTACAGGACTA+TGG + chr1_3:29208525-29208544 None:intergenic 35.0%
! TGTTGCTCTATGTTTGTTAC+AGG + chr1_3:29208532-29208551 None:intergenic 35.0%
CTATATCAGTGGCATATGTT+AGG + chr1_3:29208559-29208578 None:intergenic 35.0%
TATAGTCCAAGCTATATCAG+TGG + chr1_3:29208570-29208589 None:intergenic 35.0%
!! TTCATGTTGTTAGCCTCTTT+TGG - chr1_3:29208647-29208666 Msa0113300:CDS 35.0%
!!! CTCTTTTGGCATCTAGTTTT+GGG - chr1_3:29208661-29208680 Msa0113300:CDS 35.0%
TTCTAGATAGTTTCAGCCTA+AGG - chr1_3:29208686-29208705 Msa0113300:intron 35.0%
TCTAGATAGTTTCAGCCTAA+GGG - chr1_3:29208687-29208706 Msa0113300:intron 35.0%
!!! AGCAGGTTTTGGTTGTTATA+TGG - chr1_3:29208722-29208741 Msa0113300:intron 35.0%
TACAGAAACAAAACAAGGGA+GGG + chr1_3:29208826-29208845 None:intergenic 35.0%
CAACAATATGACACTCTCAA+AGG + chr1_3:29209078-29209097 None:intergenic 35.0%
!! TTGAGAGTGTCATATTGTTG+TGG - chr1_3:29209078-29209097 Msa0113300:CDS 35.0%
GGAATGTCTATTCAAATGCT+AGG - chr1_3:29209202-29209221 Msa0113300:CDS 35.0%
CTAAAAAAGAGATGGAAAGG+AGG - chr1_3:29209236-29209255 Msa0113300:CDS 35.0%
ATGGAAAGGAGGAAACATAT+TGG - chr1_3:29209247-29209266 Msa0113300:CDS 35.0%
! GTGTCTAAAACTAAGAGGTA+CGG - chr1_3:29209459-29209478 Msa0113300:five_prime_UTR 35.0%
! TGTCTAAAACTAAGAGGTAC+GGG - chr1_3:29209460-29209479 Msa0113300:five_prime_UTR 35.0%
GAATTTATAGTCCAACCATC+AGG - chr1_3:29209655-29209674 Msa0113300:five_prime_UTR 35.0%
! TAGTATTTGTGGTGGGATAT+CGG + chr1_3:29209683-29209702 None:intergenic 35.0%
!! CAGCTAATACATTTTGAGTG+GGG + chr1_3:29209929-29209948 None:intergenic 35.0%
!! GCAGCTAATACATTTTGAGT+GGG + chr1_3:29209930-29209949 None:intergenic 35.0%
! TGCAGCTAATACATTTTGAG+TGG + chr1_3:29209931-29209950 None:intergenic 35.0%
AAATTCACTTACGTGTTAGC+CGG - chr1_3:29209966-29209985 Msa0113300:five_prime_UTR 35.0%
GACCCTTTAATAATTCCTGA+AGG - chr1_3:29210044-29210063 Msa0113300:five_prime_UTR 35.0%
! TAACTTTTCCACTAACCTTC+AGG + chr1_3:29210062-29210081 None:intergenic 35.0%
!! TGTAGGAAAGTTTTATCTCG+GGG - chr1_3:29210165-29210184 Msa0113300:five_prime_UTR 35.0%
CGGGATTTATGCTTAAACAA+GGG - chr1_3:29210191-29210210 Msa0113300:five_prime_UTR 35.0%
! TGATAACGAACTCCTCTATA+TGG + chr1_3:29210226-29210245 None:intergenic 35.0%
! AACGTCATTGAGAGAACTTT+TGG - chr1_3:29210319-29210338 Msa0113300:five_prime_UTR 35.0%
CTTCATCATGTTGTTGTGTT+TGG + chr1_3:29210528-29210547 None:intergenic 35.0%
AACTACATTAAGCTCCATAC+AGG + chr1_3:29210603-29210622 None:intergenic 35.0%
ATTGAATGCTTTGATGGAAG+AGG - chr1_3:29210937-29210956 Msa0113300:five_prime_UTR 35.0%
!! TGAATGTCGTAGCTGTTTTA+CGG - chr1_3:29211008-29211027 Msa0113300:five_prime_UTR 35.0%
GGTGAAGCATATGATCTATT+TGG - chr1_3:29211100-29211119 Msa0113300:five_prime_UTR 35.0%
GAAGCATATGATCTATTTGG+TGG - chr1_3:29211103-29211122 Msa0113300:five_prime_UTR 35.0%
TTGGATGGAATTCAACAACT+AGG - chr1_3:29211137-29211156 Msa0113300:five_prime_UTR 35.0%
TTCAACAACTAGGAGGTTTA+CGG - chr1_3:29211147-29211166 Msa0113300:five_prime_UTR 35.0%
CTTATAAGTTCTTCCCAAAC+TGG + chr1_3:29211181-29211200 None:intergenic 35.0%
! CATAGTGTGTGTTTGATGAT+AGG - chr1_3:29211292-29211311 Msa0113300:five_prime_UTR 35.0%
!!! GATGTTCTGAAGGTTCTTTT+TGG - chr1_3:29211362-29211381 Msa0113300:five_prime_UTR 35.0%
!!! TGTTCTGAAGGTTCTTTTTG+GGG - chr1_3:29211364-29211383 Msa0113300:five_prime_UTR 35.0%
TCATGTAAGTATCATCAGCT+GGG + chr1_3:29211502-29211521 None:intergenic 35.0%
CTTGCTGATATACTTGATGA+AGG - chr1_3:29211530-29211549 Msa0113300:five_prime_UTR 35.0%
ACTCATACAGTCCAACATAT+GGG - chr1_3:29211573-29211592 Msa0113300:five_prime_UTR 35.0%
! TCCAATGAATGATTTTGTGG+AGG - chr1_3:29211649-29211668 Msa0113300:five_prime_UTR 35.0%
ATGGAATATGCTTGATGAGT+TGG - chr1_3:29211865-29211884 Msa0113300:five_prime_UTR 35.0%
TAGCACTTGAAACGAAATTG+TGG + chr1_3:29211899-29211918 None:intergenic 35.0%
ACAGGTTCTCTTACAAATGA+TGG - chr1_3:29211985-29212004 Msa0113300:five_prime_UTR 35.0%
ATATGTAATGAGGACACATC+TGG - chr1_3:29212071-29212090 Msa0113300:five_prime_UTR 35.0%
CATGCAGTAGGGAAAAAAAA+AGG - chr1_3:29212135-29212154 Msa0113300:five_prime_UTR 35.0%
!! CAATATGTAGTTGCCACTTT+AGG - chr1_3:29212158-29212177 Msa0113300:five_prime_UTR 35.0%
TTATTGTGTTAGGCCAACTA+TGG - chr1_3:29212226-29212245 Msa0113300:five_prime_UTR 35.0%
ACCATAAGAAATGCCATAGT+TGG + chr1_3:29212242-29212261 None:intergenic 35.0%
!! CGGATGTTAACCGTTTTAAG+AGG - chr1_3:29206276-29206295 Msa0113300:three_prime_UTR 40.0%
TCTCTCAACAGCGAAGAAAA+AGG - chr1_3:29206460-29206479 Msa0113300:three_prime_UTR 40.0%
CCGCGAAAACCAAAAAGAAA+AGG + chr1_3:29206525-29206544 None:intergenic 40.0%
CAAAGGAATAAAAAGGTGGG+AGG + chr1_3:29206569-29206588 None:intergenic 40.0%
! CTCCCACCTTTTTATTCCTT+TGG - chr1_3:29206567-29206586 Msa0113300:three_prime_UTR 40.0%
GACCCAAAGGAATAAAAAGG+TGG + chr1_3:29206573-29206592 None:intergenic 40.0%
TGAGGAAGATAATGACCCAA+AGG + chr1_3:29206586-29206605 None:intergenic 40.0%
GATAGATCAAGAGAAGTTGC+AGG + chr1_3:29206634-29206653 None:intergenic 40.0%
! GGTGTTGTAGAGATCTAAGA+AGG + chr1_3:29206656-29206675 None:intergenic 40.0%
!! TTCCAGATCTAGTCTTGATG+TGG + chr1_3:29206677-29206696 None:intergenic 40.0%
ATGTTGGAGGGATTTCTTTG+TGG - chr1_3:29206983-29207002 Msa0113300:three_prime_UTR 40.0%
TCCGAAGATTCAGTTCAGTA+TGG - chr1_3:29207368-29207387 Msa0113300:three_prime_UTR 40.0%
CTGAATTGTACCACAGTCAA+TGG - chr1_3:29207509-29207528 Msa0113300:three_prime_UTR 40.0%
!!! GTTACTTTTGCTGCCATCTA+TGG - chr1_3:29207550-29207569 Msa0113300:three_prime_UTR 40.0%
GGATGCTCAGGAAATATATG+TGG - chr1_3:29207780-29207799 Msa0113300:three_prime_UTR 40.0%
! TTTGATCCTTTGGAGGGAAA+TGG - chr1_3:29208163-29208182 Msa0113300:CDS 40.0%
CACGAGAGAGACACTATATT+GGG - chr1_3:29208207-29208226 Msa0113300:CDS 40.0%
CATATGCCACTGATATAGCT+TGG - chr1_3:29208561-29208580 Msa0113300:CDS 40.0%
CCAAAACTAGATGCCAAAAG+AGG + chr1_3:29208663-29208682 None:intergenic 40.0%
!! CCTCTTTTGGCATCTAGTTT+TGG - chr1_3:29208660-29208679 Msa0113300:CDS 40.0%
CTAGATAGTTTCAGCCTAAG+GGG - chr1_3:29208688-29208707 Msa0113300:intron 40.0%
ACAGAAACAAAACAAGGGAG+GGG + chr1_3:29208825-29208844 None:intergenic 40.0%
GTACAGAAACAAAACAAGGG+AGG + chr1_3:29208827-29208846 None:intergenic 40.0%
GATCATGTCTTGTGTTCATG+AGG - chr1_3:29208871-29208890 Msa0113300:CDS 40.0%
TTGCTCATTTGTGCTACATG+TGG - chr1_3:29209048-29209067 Msa0113300:CDS 40.0%
TGCTCATTTGTGCTACATGT+GGG - chr1_3:29209049-29209068 Msa0113300:CDS 40.0%
! AGAGTGTCATATTGTTGTGG+AGG - chr1_3:29209081-29209100 Msa0113300:CDS 40.0%
TAGTGCACACAGATAAGTGT+CGG - chr1_3:29209398-29209417 Msa0113300:CDS 40.0%
! CAGCTGTGTCTAAAACTAAG+AGG - chr1_3:29209454-29209473 Msa0113300:five_prime_UTR 40.0%
! AAGAGGTACGGGTATAGTAA+AGG - chr1_3:29209471-29209490 Msa0113300:five_prime_UTR 40.0%
TTGCATGCCATACTTGCATT+AGG - chr1_3:29209628-29209647 Msa0113300:five_prime_UTR 40.0%
TGCATGCCATACTTGCATTA+GGG - chr1_3:29209629-29209648 Msa0113300:five_prime_UTR 40.0%
TTCTTCCCCTAATGCAAGTA+TGG + chr1_3:29209638-29209657 None:intergenic 40.0%
GATTGCATTGGAGCTATAGA+TGG - chr1_3:29209840-29209859 Msa0113300:five_prime_UTR 40.0%
! TTTTCTTCCACGAAAACGAG+GGG + chr1_3:29209901-29209920 None:intergenic 40.0%
! CTTTTCTTCCACGAAAACGA+GGG + chr1_3:29209902-29209921 None:intergenic 40.0%
! TCTTTTCTTCCACGAAAACG+AGG + chr1_3:29209903-29209922 None:intergenic 40.0%
AATTCACTTACGTGTTAGCC+GGG - chr1_3:29209967-29209986 Msa0113300:five_prime_UTR 40.0%
!! AAAGTTTTATCTCGGGGATG+CGG - chr1_3:29210171-29210190 Msa0113300:five_prime_UTR 40.0%
GCGGGATTTATGCTTAAACA+AGG - chr1_3:29210190-29210209 Msa0113300:five_prime_UTR 40.0%
GGGTTACTAACTCCATATAG+AGG - chr1_3:29210211-29210230 Msa0113300:five_prime_UTR 40.0%
!! TTGAAAGAGTATTCCTCTCG+TGG - chr1_3:29210247-29210266 Msa0113300:five_prime_UTR 40.0%
!! TGAAAGAGTATTCCTCTCGT+GGG - chr1_3:29210248-29210267 Msa0113300:five_prime_UTR 40.0%
! AATAACTCTCGGGGATTTTG+TGG + chr1_3:29210274-29210293 None:intergenic 40.0%
TCGAAGGTTGAATAACTCTC+GGG + chr1_3:29210284-29210303 None:intergenic 40.0%
GTCGAAGGTTGAATAACTCT+CGG + chr1_3:29210285-29210304 None:intergenic 40.0%
! TCAGTGCCACTAGCTATAAT+TGG + chr1_3:29210364-29210383 None:intergenic 40.0%
! TGATGAAGCACTAATTGCTG+AGG - chr1_3:29210465-29210484 Msa0113300:five_prime_UTR 40.0%
ACTGAAATGTGGAACCTGTA+TGG - chr1_3:29210586-29210605 Msa0113300:five_prime_UTR 40.0%
AGAACCTAGACAAGCTACTA+AGG - chr1_3:29210877-29210896 Msa0113300:five_prime_UTR 40.0%
AAGCTACTAAGGACGTCTTA+AGG - chr1_3:29210888-29210907 Msa0113300:five_prime_UTR 40.0%
!! CTTAAGGTGGACTGATGATA+TGG - chr1_3:29210904-29210923 Msa0113300:five_prime_UTR 40.0%
!!! ATGTGTTGTTTTGTTAGGGC+TGG + chr1_3:29211046-29211065 None:intergenic 40.0%
GATGGAATTCAACAACTAGG+AGG - chr1_3:29211140-29211159 Msa0113300:five_prime_UTR 40.0%
TAAAACCACATGCTGCTAAG+TGG - chr1_3:29211315-29211334 Msa0113300:five_prime_UTR 40.0%
ACAATCAGTTGGAGAAGGAA+AGG - chr1_3:29211432-29211451 Msa0113300:five_prime_UTR 40.0%
CAATCAGTTGGAGAAGGAAA+GGG - chr1_3:29211433-29211452 Msa0113300:five_prime_UTR 40.0%
GTCATGTAAGTATCATCAGC+TGG + chr1_3:29211503-29211522 None:intergenic 40.0%
CATCAAGTATATCAGCAAGC+TGG + chr1_3:29211529-29211548 None:intergenic 40.0%
GGACTGTATGAGTCAACAAT+GGG + chr1_3:29211566-29211585 None:intergenic 40.0%
TGGACTGTATGAGTCAACAA+TGG + chr1_3:29211567-29211586 None:intergenic 40.0%
GACTCATACAGTCCAACATA+TGG - chr1_3:29211572-29211591 Msa0113300:five_prime_UTR 40.0%
TGCTGTGATTTCCCATATGT+TGG + chr1_3:29211587-29211606 None:intergenic 40.0%
! GGCTCCAATGAATGATTTTG+TGG - chr1_3:29211646-29211665 Msa0113300:five_prime_UTR 40.0%
GCCTCCACAAAATCATTCAT+TGG + chr1_3:29211653-29211672 None:intergenic 40.0%
! TGATTTTGTGGAGGCTCAAT+TGG - chr1_3:29211658-29211677 Msa0113300:five_prime_UTR 40.0%
CAATTGGATAGAATGACGAG+TGG - chr1_3:29211674-29211693 Msa0113300:five_prime_UTR 40.0%
TGTATACAGGAGCAGATGTA+TGG - chr1_3:29211846-29211865 Msa0113300:five_prime_UTR 40.0%
CTACTGTCAATTGCCTAAAG+TGG + chr1_3:29212174-29212193 None:intergenic 40.0%
GCCAACTATGGCATTTCTTA+TGG - chr1_3:29212238-29212257 Msa0113300:five_prime_UTR 40.0%
GAATAAAAAGGTGGGAGGAG+AGG + chr1_3:29206564-29206583 None:intergenic 45.0%
! TCATCCTCCAAGTTTGGTGA+TGG - chr1_3:29206607-29206626 Msa0113300:three_prime_UTR 45.0%
CACCACATCAAGACTAGATC+TGG - chr1_3:29206672-29206691 Msa0113300:three_prime_UTR 45.0%
! TAAAAGGGCATGCAGTACCA+TGG - chr1_3:29206797-29206816 Msa0113300:three_prime_UTR 45.0%
TGACAAACACACCACATCCA+TGG + chr1_3:29206817-29206836 None:intergenic 45.0%
ATTGAATGGCAAGGATGCTC+AGG - chr1_3:29207768-29207787 Msa0113300:three_prime_UTR 45.0%
TCCACAGTTTGATCCTTTGG+AGG - chr1_3:29208156-29208175 Msa0113300:CDS 45.0%
CCACAGTTTGATCCTTTGGA+GGG - chr1_3:29208157-29208176 Msa0113300:CDS 45.0%
CCAATATAGTGTCTCTCTCG+TGG + chr1_3:29208209-29208228 None:intergenic 45.0%
CCACGAGAGAGACACTATAT+TGG - chr1_3:29208206-29208225 Msa0113300:CDS 45.0%
TTTCAGCCTAAGGGGTTTGA+AGG - chr1_3:29208696-29208715 Msa0113300:intron 45.0%
TTCAGCCTAAGGGGTTTGAA+GGG - chr1_3:29208697-29208716 Msa0113300:intron 45.0%
ATGCTCACTTTGTGGAGAGT+AGG + chr1_3:29209353-29209372 None:intergenic 45.0%
TGACGTCTATGCTCACTTTG+TGG + chr1_3:29209361-29209380 None:intergenic 45.0%
AGTGCACACAGATAAGTGTC+GGG - chr1_3:29209399-29209418 Msa0113300:CDS 45.0%
TGTCGGGACATCATACGAAT+GGG - chr1_3:29209415-29209434 Msa0113300:exon 45.0%
GTCTACTGTAGAAGAGCAAG+TGG - chr1_3:29209504-29209523 Msa0113300:five_prime_UTR 45.0%
TGCAAGTATGGCATGCAACA+CGG + chr1_3:29209626-29209645 None:intergenic 45.0%
GCATGCCATACTTGCATTAG+GGG - chr1_3:29209630-29209649 Msa0113300:five_prime_UTR 45.0%
!! AAGTTTTATCTCGGGGATGC+GGG - chr1_3:29210172-29210191 Msa0113300:five_prime_UTR 45.0%
CGAAGGTTGAATAACTCTCG+GGG + chr1_3:29210283-29210302 None:intergenic 45.0%
ACCTTCGACACTCTTCACTT+CGG - chr1_3:29210296-29210315 Msa0113300:five_prime_UTR 45.0%
! CATGATGAAGACTACCGACT+AGG - chr1_3:29210538-29210557 Msa0113300:five_prime_UTR 45.0%
! ACGTCCTTAGTAGCTTGTCT+AGG + chr1_3:29210884-29210903 None:intergenic 45.0%
CTACTAAGGACGTCTTAAGG+TGG - chr1_3:29210891-29210910 Msa0113300:five_prime_UTR 45.0%
TTGATGGAAGAGGTCCACAA+AGG - chr1_3:29210947-29210966 Msa0113300:five_prime_UTR 45.0%
TGATGGAAGAGGTCCACAAA+GGG - chr1_3:29210948-29210967 Msa0113300:five_prime_UTR 45.0%
AAGAGGTCCACAAAGGGAAT+AGG - chr1_3:29210954-29210973 Msa0113300:five_prime_UTR 45.0%
CATCATGCCTATTCCCTTTG+TGG + chr1_3:29210964-29210983 None:intergenic 45.0%
CACAAAGGGAATAGGCATGA+TGG - chr1_3:29210962-29210981 Msa0113300:five_prime_UTR 45.0%
! GATCTATTTGGTGGCTTGAG+CGG - chr1_3:29211112-29211131 Msa0113300:five_prime_UTR 45.0%
! GTTTTCCACTTAGCAGCATG+TGG + chr1_3:29211323-29211342 None:intergenic 45.0%
! TAGATGTTTTTCCCGCTGCT+CGG + chr1_3:29211394-29211413 None:intergenic 45.0%
GAGACACAATCAGTTGGAGA+AGG - chr1_3:29211427-29211446 Msa0113300:five_prime_UTR 45.0%
GTTGGAGAAGGAAAGGGAAA+AGG - chr1_3:29211439-29211458 Msa0113300:five_prime_UTR 45.0%
GGGAAATCACAGCAATCCAT+AGG - chr1_3:29211593-29211612 Msa0113300:five_prime_UTR 45.0%
CAGCAATCCATAGGAACATC+TGG - chr1_3:29211602-29211621 Msa0113300:five_prime_UTR 45.0%
!! ATAGGAACATCTGGTTCTCG+CGG - chr1_3:29211611-29211630 Msa0113300:five_prime_UTR 45.0%
GATAGAATGACGAGTGGCAT+TGG - chr1_3:29211680-29211699 Msa0113300:five_prime_UTR 45.0%
ATGGCTGATGCGTTGAACAA+AGG - chr1_3:29211707-29211726 Msa0113300:five_prime_UTR 45.0%
TGTAGACCTCGAGTGTATAC+AGG - chr1_3:29211833-29211852 Msa0113300:five_prime_UTR 45.0%
ACCTGTAAACGCATGTCAGT+GGG + chr1_3:29211971-29211990 None:intergenic 45.0%
AACCTGTAAACGCATGTCAG+TGG + chr1_3:29211972-29211991 None:intergenic 45.0%
!!! TATATTTTATAAAATTTTGT+AGG - chr1_3:29210148-29210167 Msa0113300:five_prime_UTR 5.0%
AAGAGAGAAGACTGCAGCGT+GGG - chr1_3:29206416-29206435 Msa0113300:three_prime_UTR 50.0%
CCAAACTTGGAGGATGAGTG+AGG + chr1_3:29206604-29206623 None:intergenic 50.0%
CCTCACTCATCCTCCAAGTT+TGG - chr1_3:29206601-29206620 Msa0113300:three_prime_UTR 50.0%
AGGTCCATCACCAAACTTGG+AGG + chr1_3:29206614-29206633 None:intergenic 50.0%
TGCAGGTCCATCACCAAACT+TGG + chr1_3:29206617-29206636 None:intergenic 50.0%
CCCTCCAAAGGATCAAACTG+TGG + chr1_3:29208160-29208179 None:intergenic 50.0%
GACGAACCATTTCCCTCCAA+AGG + chr1_3:29208172-29208191 None:intergenic 50.0%
TCAGCCTAAGGGGTTTGAAG+GGG - chr1_3:29208698-29208717 Msa0113300:intron 50.0%
! TTTGAAGGGGGAGCAGGTTT+TGG - chr1_3:29208711-29208730 Msa0113300:intron 50.0%
GTGTCGGGACATCATACGAA+TGG - chr1_3:29209414-29209433 Msa0113300:exon 50.0%
GTCGGGACATCATACGAATG+GGG - chr1_3:29209416-29209435 Msa0113300:exon 50.0%
CACAGCTGCATGAATGCTTC+AGG + chr1_3:29209442-29209461 None:intergenic 50.0%
TGGCACACACATTCGAGTGA+AGG - chr1_3:29209860-29209879 Msa0113300:five_prime_UTR 50.0%
ACATTCGAGTGAAGGTCCCA+AGG - chr1_3:29209868-29209887 Msa0113300:five_prime_UTR 50.0%
CATTCGAGTGAAGGTCCCAA+GGG - chr1_3:29209869-29209888 Msa0113300:five_prime_UTR 50.0%
AGATGTTGTTCCTTCCCACC+CGG + chr1_3:29209988-29210007 None:intergenic 50.0%
!! TCCGAAGTGAAGAGTGTCGA+AGG + chr1_3:29210300-29210319 None:intergenic 50.0%
ACCGACTAGGATCGCTTCTT+AGG - chr1_3:29210551-29210570 Msa0113300:five_prime_UTR 50.0%
CCCTAAGAAGCGATCCTAGT+CGG + chr1_3:29210555-29210574 None:intergenic 50.0%
CCGACTAGGATCGCTTCTTA+GGG - chr1_3:29210552-29210571 Msa0113300:five_prime_UTR 50.0%
! TTTGGTGGCTTGAGCGGATT+TGG - chr1_3:29211118-29211137 Msa0113300:five_prime_UTR 50.0%
AACTAGGAGGTTTACGGCTG+AGG - chr1_3:29211153-29211172 Msa0113300:five_prime_UTR 50.0%
TTACGGCTGAGGAACCAGTT+TGG - chr1_3:29211164-29211183 Msa0113300:five_prime_UTR 50.0%
TACGGCTGAGGAACCAGTTT+GGG - chr1_3:29211165-29211184 Msa0113300:five_prime_UTR 50.0%
GCGAGAACCAGATGTTCCTA+TGG + chr1_3:29211612-29211631 None:intergenic 50.0%
TTCTCGCGGAACAAAGCGTA+AGG - chr1_3:29211625-29211644 Msa0113300:five_prime_UTR 50.0%
TCTGCTCCTGTATACACTCG+AGG + chr1_3:29211842-29211861 None:intergenic 50.0%
GAAGAGAGAAGACTGCAGCG+TGG - chr1_3:29206415-29206434 Msa0113300:three_prime_UTR 55.0%
GGCATGCAGTACCATGGATG+TGG - chr1_3:29206803-29206822 Msa0113300:three_prime_UTR 55.0%
CAGCCTAAGGGGTTTGAAGG+GGG - chr1_3:29208699-29208718 Msa0113300:intron 55.0%
GGATATCGGCACCTGATGGT+TGG + chr1_3:29209669-29209688 None:intergenic 55.0%
TCACTTACGTGTTAGCCGGG+TGG - chr1_3:29209970-29209989 Msa0113300:five_prime_UTR 55.0%
CACTTACGTGTTAGCCGGGT+GGG - chr1_3:29209971-29209990 Msa0113300:five_prime_UTR 55.0%
! GTGGCTTGAGCGGATTTGGA+TGG - chr1_3:29211122-29211141 Msa0113300:five_prime_UTR 55.0%
!! TTTTGGGGAAGACCGAGCAG+CGG - chr1_3:29211379-29211398 Msa0113300:five_prime_UTR 55.0%
! GACGAGTGGCATTGGACTCA+TGG - chr1_3:29211688-29211707 Msa0113300:five_prime_UTR 55.0%
GCCCACTGACATGCGTTTAC+AGG - chr1_3:29211967-29211986 Msa0113300:five_prime_UTR 55.0%
GCTCCCCCTTCAAACCCCTT+AGG + chr1_3:29208705-29208724 None:intergenic 60.0%
AAGGGGTTTGAAGGGGGAGC+AGG - chr1_3:29208705-29208724 Msa0113300:intron 60.0%
GGTGGGATATCGGCACCTGA+TGG + chr1_3:29209673-29209692 None:intergenic 60.0%
AACGAGGGGCTTCTGCCCTT+GGG + chr1_3:29209887-29209906 None:intergenic 60.0%
AAACGAGGGGCTTCTGCCCT+TGG + chr1_3:29209888-29209907 None:intergenic 60.0%
! GCAGAAGCCCCTCGTTTTCG+TGG - chr1_3:29209891-29209910 Msa0113300:five_prime_UTR 60.0%
TACGTGTTAGCCGGGTGGGA+AGG - chr1_3:29209975-29209994 Msa0113300:five_prime_UTR 60.0%
! GGGATTTTGTGGCCCACGAG+AGG + chr1_3:29210263-29210282 None:intergenic 60.0%
TTTGGGGAAGACCGAGCAGC+GGG - chr1_3:29211380-29211399 Msa0113300:five_prime_UTR 60.0%
AGGTGGGAGGAGAGGAAGCG+CGG + chr1_3:29206556-29206575 None:intergenic 65.0%
! GGTGGGAGGAGAGGAAGCGC+GGG + chr1_3:29206555-29206574 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 29206263 29212270 29206263 ID=Msa0113300;Name=Msa0113300
chr1_3 mRNA 29206263 29212270 29206263 ID=Msa0113300-mRNA-1;Parent=Msa0113300;Name=Msa0113300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=2843|1|1|1|1|0.75|4|1543|432
chr1_3 exon 29206263 29207219 29206263 ID=Msa0113300-mRNA-1:exon:9658;Parent=Msa0113300-mRNA-1
chr1_3 exon 29207332 29208363 29207332 ID=Msa0113300-mRNA-1:exon:9657;Parent=Msa0113300-mRNA-1
chr1_3 exon 29208468 29208693 29208468 ID=Msa0113300-mRNA-1:exon:9656;Parent=Msa0113300-mRNA-1
chr1_3 exon 29208801 29212270 29208801 ID=Msa0113300-mRNA-1:exon:9655;Parent=Msa0113300-mRNA-1
chr1_3 five_prime_UTR 29209428 29212270 29209428 ID=Msa0113300-mRNA-1:five_prime_utr;Parent=Msa0113300-mRNA-1
chr1_3 CDS 29208801 29209427 29208801 ID=Msa0113300-mRNA-1:cds;Parent=Msa0113300-mRNA-1
chr1_3 CDS 29208468 29208693 29208468 ID=Msa0113300-mRNA-1:cds;Parent=Msa0113300-mRNA-1
chr1_3 CDS 29207918 29208363 29207918 ID=Msa0113300-mRNA-1:cds;Parent=Msa0113300-mRNA-1
chr1_3 three_prime_UTR 29207332 29207917 29207332 ID=Msa0113300-mRNA-1:three_prime_utr;Parent=Msa0113300-mRNA-1
chr1_3 three_prime_UTR 29206263 29207219 29206263 ID=Msa0113300-mRNA-1:three_prime_utr;Parent=Msa0113300-mRNA-1
Gene Sequence

>Msa0113300

ATGTCAAATCTAGATAGTGTTGAAGACGTAAGAAATGATGAACGAATTGAAATAATAGATGAAGTGGACTTGGATGAAGATGAAATGATTGATGTTGGAATGTCTATTCAAATGCTAGGTTTAAATCATGCTAAAAAAGAGATGGAAAGGAGGAAACATATTGGTTCTGTTGTCTTATTGTGTCATGTTGTCCATGCATTGTATTTGAATCAAATCTTATCAACATGTATGCATAGTCGAGTCACCTACTCTCCACAAAGTGAGCATAGACGTCATGAGTTAATGAGTTATCTAGTGCACACAGATAAGTGTCGGGACATCATACGAATGGGGCCTGAAGCATTCATGCAGCTGTGTCTAAAACTAAGAGGTACGGGTATAGTAAAGGATACTATAAAGTCTACTGTAGAAGAGCAAGTGGCAAAATTCTTGCATATTGTAGGACATAATGTTAAAAATCGTACTGTATCTTTCTTCTTTTATCGTTCGGGAGAGACTGTTAGTCGTCACTTTCACACCGTGTTGCATGCCATACTTGCATTAGGGGAAGAATTTATAGTCCAACCATCAGGTGCCGATATCCCACCACAAATACTAAACAATAGCAGATTTTATCCATTTTTTAAGGATTGCATTGGAGCTATAGATGGCACACACATTCGAGTGAAGGTCCCAAGGGCAGAAGCCCCTCGTTTTCGTGGAAGAAAAGAGCACCCCACTCAAAATGTATTAGCTGCATGTAATTTCGACATGAAATTCACTTACGTGTTAGCCGGGTGGGAAGGAACAACATCTGACTCTAGAATATTAAAAGATGCTTTAACTAAAGAAGACCCTTTAATAATTCCTGAAGGAAAGTTTTATCTCGGGGATGCGGGATTTATGCTTAAACAAGGGTTACTAACTCCATATAGAGGAGTTCGTTATCACTTGAAAGAGTATTCCTCTCGTGGGCCACAAAATCCCCGAGAGTTATTCAACCTTCGACACTCTTCACTTCGGAACGTCATTGAGAGAACTTTTGGTGTGTTAAAAAAGAGATTTCCAATTATAGCTAGTGGCACTGAACCGCATTATTCACTTGAAGTAATGATAGACATAGTATTTGCTTGTTGTATACTTCATAACTTTTTAATGGGAGTGGACATTGATGAAGCACTAATTGCTGAGGTTGATCATGAACTGCTTCAAAATGACATAGATAGATCCCAAACACAACAACATGATGAAGACTACCGACTAGGATCGCTTCTTAGGGAAGCTATTACAACTGAAATGTGGAACCTGTATGGAGCTTAA
Protein sequence

>Msa0113300

MSNLDSVEDVRNDERIEIIDEVDLDEDEMIDVGMSIQMLGLNHAKKEMERRKHIGSVVLLCHVVHALYLNQILSTCMHSRVTYSPQSEHRRHELMSYLVHTDKCRDIIRMGPEAFMQLCLKLRGTGIVKDTIKSTVEEQVAKFLHIVGHNVKNRTVSFFFYRSGETVSRHFHTVLHAILALGEEFIVQPSGADIPPQILNNSRFYPFFKDCIGAIDGTHIRVKVPRAEAPRFRGRKEHPTQNVLAACNFDMKFTYVLAGWEGTTSDSRILKDALTKEDPLIIPEGKFYLGDAGFMLKQGLLTPYRGVRYHLKEYSSRGPQNPRELFNLRHSSLRNVIERTFGVLKKRFPIIASGTEPHYSLEVMIDIVFACCILHNFLMGVDIDEALIAEVDHELLQNDIDRSQTQQHDEDYRLGSLLREAITTEMWNLYGA*