AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562160 MtrunA17_Chr7g0226311 95.858 338 14 0 95 432 1 338 0.0 681
Msa0562160 MtrunA17_Chr6g0478531 42.120 349 178 6 103 430 38 383 3.52e-89 276
Msa0562160 MtrunA17_Chr6g0477141 46.780 295 148 5 90 378 125 416 2.09e-88 276
Msa0562160 MtrunA17_Chr1g0207391 39.521 334 188 4 105 427 90 420 3.22e-83 261
Msa0562160 MtrunA17_Chr8g0391981 41.108 343 177 5 104 430 78 411 8.12e-80 253
Msa0562160 MtrunA17_Chr1g0172731 44.753 324 155 8 103 417 66 374 2.03e-79 251
Msa0562160 MtrunA17_Chr1g0190171 44.136 324 157 8 103 417 66 374 2.03e-78 248
Msa0562160 MtrunA17_Chr4g0018411 70.345 145 43 0 286 430 9 153 4.29e-71 221
Msa0562160 MtrunA17_Chr1g0182341 32.126 414 217 12 45 429 4 382 5.70e-58 195
Msa0562160 MtrunA17_Chr2g0321401 45.771 201 93 4 103 292 65 260 1.11e-50 172
Msa0562160 MtrunA17_Chr2g0285471 45.685 197 91 4 107 292 1 192 5.92e-49 165
Msa0562160 MtrunA17_Chr8g0334561 44.162 197 102 3 103 292 66 261 9.61e-48 164
Msa0562160 MtrunA17_Chr7g0267201 43.226 155 79 2 115 260 6 160 3.94e-36 130
Msa0562160 MtrunA17_Chr2g0302711 87.302 63 8 0 1 63 1 63 9.93e-31 112
Msa0562160 MtrunA17_Chr4g0018401 47.368 133 64 3 1 132 1 128 1.68e-25 100
Msa0562160 MtrunA17_Chr8g0361831 93.548 31 2 0 1 31 1 31 5.67e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562160 AT5G41980.1 37.791 344 185 7 101 430 39 367 1.05e-70 228
Msa0562160 AT1G43722.1 37.795 254 148 4 104 347 66 319 1.87e-48 168
Msa0562160 AT5G35695.1 44.199 181 83 6 253 427 25 193 3.12e-37 135
Msa0562160 AT5G28730.1 31.579 228 122 6 86 305 4 205 4.35e-30 118
Msa0562160 AT5G28950.1 56.627 83 36 0 194 276 8 90 5.50e-29 111
Msa0562160 AT3G30525.1 37.821 156 88 4 215 363 1 154 3.24e-25 101
Msa0562160 AT3G55350.1 29.018 224 111 8 210 413 182 377 6.39e-17 82.8

Find 255 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTATCCTTTGTAAAT+TGG 0.132740 4_1:-61798146 Msa0562160:five_prime_UTR
ACTGGATGATGAATTAATTT+TGG 0.165135 4_1:-61796989 Msa0562160:five_prime_UTR
TTGAAACTAAATGCATTTAT+AGG 0.171784 4_1:-61794320 Msa0562160:three_prime_UTR
TGTTTCAATTGATAAATATT+TGG 0.173013 4_1:-61794419 Msa0562160:three_prime_UTR
TGGTGTTCAATTTATAATTA+AGG 0.187981 4_1:+61796547 None:intergenic
TGTTGTTGATCTTATATAAA+AGG 0.204562 4_1:-61798253 Msa0562160:five_prime_UTR
TTCATGTTGTTAGCCTCTTT+TGG 0.232792 4_1:-61796494 Msa0562160:five_prime_UTR
TAACCTTCAGGAATTATTAA+AGG 0.236537 4_1:+61795095 None:intergenic
TGTTGCTCTATGTTTGTTAC+AGG 0.237896 4_1:+61796612 None:intergenic
GCCAACTATGGCATTTCTTA+TGG 0.249341 4_1:-61792906 Msa0562160:three_prime_UTR
ACCGACTAGGATCGCTTCTT+AGG 0.268580 4_1:-61794591 Msa0562160:CDS
TTAACAGCATAGATTTATTA+AGG 0.269972 4_1:+61796247 None:intergenic
GGTGAAGCATATGATCTATT+TGG 0.277405 4_1:-61794041 Msa0562160:three_prime_UTR
GAATACATATACCTTTAAAA+TGG 0.282754 4_1:+61797437 None:intergenic
TGCTTCAGATATTGACAAAA+TGG 0.285272 4_1:+61797310 None:intergenic
AATATTATTGAATGCTTTGA+TGG 0.286306 4_1:-61794210 Msa0562160:three_prime_UTR
CCAATACAGAGTAGATAAAA+AGG 0.286642 4_1:+61796129 None:intergenic
AGGACTATGGTATGCAAATA+AGG 0.288726 4_1:+61796632 None:intergenic
AACTGTCAACGTATACTTTA+GGG 0.290786 4_1:+61797979 None:intergenic
AAATCCACAGTTTGATCCTT+TGG 0.296640 4_1:-61796884 Msa0562160:five_prime_UTR
ATGTAAAATTCAAAATTTCT+AGG 0.299221 4_1:+61797722 None:intergenic
CTTCATCATGCTGTTGTGTT+TGG 0.300163 4_1:+61794617 None:intergenic
GCCCACTGACATGCGTTTAC+AGG 0.303601 4_1:-61793175 Msa0562160:three_prime_UTR
AAACTGTCAACGTATACTTT+AGG 0.304620 4_1:+61797978 None:intergenic
TTGCATGCCATACTTGCATT+AGG 0.305624 4_1:-61795513 Msa0562160:CDS
CTATGTTTGTTACAGGACTA+TGG 0.310232 4_1:+61796619 None:intergenic
CTAAGTGTACATATTCATTA+AGG 0.313022 4_1:+61797127 None:intergenic
TTTGGTGGCTTGAGTGGATT+TGG 0.326946 4_1:-61794023 Msa0562160:three_prime_UTR
CCTCACTCATCCTCCAAGTT+TGG 0.333782 4_1:-61798433 Msa0562160:five_prime_UTR
TCTCTCAACAGCGAAGAAAA+AGG 0.334650 4_1:-61798574 Msa0562160:five_prime_UTR
CAATATGTAGTTGCCACTTT+AGG 0.335899 4_1:-61792986 Msa0562160:three_prime_UTR
TTTATGATTGTTATAATTAC+GGG 0.337366 4_1:-61797864 Msa0562160:five_prime_UTR
TCAGTGCCACTAGCTATAAT+TGG 0.339150 4_1:+61794781 None:intergenic
TGCATGCCATACTTGCATTA+GGG 0.346393 4_1:-61795512 Msa0562160:CDS
TTTCTACCATTGATGTTGTT+TGG 0.346439 4_1:-61793127 Msa0562160:three_prime_UTR
AATGACCCAAAGGAATAAAA+AGG 0.346566 4_1:+61798461 None:intergenic
TTCTTCCCCTAATGCAAGTA+TGG 0.350341 4_1:+61795506 None:intergenic
CTTAAGGTGGACTGATGATA+TGG 0.352770 4_1:-61794237 Msa0562160:three_prime_UTR
TATGGTATAATTATTGTGTT+AGG 0.354740 4_1:-61792928 Msa0562160:three_prime_UTR
CTTATAAGTTCTTCCCAAAC+TGG 0.355871 4_1:+61793963 None:intergenic
TTCATCATGCTGTTGTGTTT+GGG 0.356496 4_1:+61794618 None:intergenic
CCACGAGAGAGACACTATAT+TGG 0.363230 4_1:-61796831 Msa0562160:five_prime_UTR
ATGTTACAAGGCATAATTAA+AGG 0.367451 4_1:+61793046 None:intergenic
TACGGCTGAGGAACCAGTTT+GGG 0.367849 4_1:-61793976 Msa0562160:three_prime_UTR
TGATAACGAACTCCTCTATA+TGG 0.368095 4_1:+61794919 None:intergenic
AAAACTTTGAAAGATCGTTT+TGG 0.370453 4_1:-61794062 Msa0562160:three_prime_UTR
AACGTCATTGAGAGAACTTT+TGG 0.372184 4_1:-61794823 Msa0562160:CDS
GAGATTATCCTTTGTAAATT+GGG 0.375445 4_1:-61798145 Msa0562160:five_prime_UTR
TTATTGTGTTAGGCCAACTA+TGG 0.376735 4_1:-61792918 Msa0562160:three_prime_UTR
AACCTTCAGGAATTATTAAA+GGG 0.377913 4_1:+61795096 None:intergenic
TAGTATTTGTGGTGGGATAT+CGG 0.378152 4_1:+61795461 None:intergenic
AGAACAAGTTACATGCATAT+TGG 0.380546 4_1:+61797050 None:intergenic
AAACGAGGGGCTTCTGCCCT+TGG 0.380938 4_1:+61795257 None:intergenic
CATCATGCCTATTCCCTTTG+TGG 0.385222 4_1:+61794180 None:intergenic
TCCGAAGATTCAGTTCAGTA+TGG 0.386490 4_1:-61797669 Msa0562160:five_prime_UTR
CTGCTATTGTTTAGTATTTG+TGG 0.387161 4_1:+61795450 None:intergenic
TTTGGTTGTTATATGGTGTT+TGG 0.390288 4_1:-61796412 Msa0562160:five_prime_UTR
AATCAATTGGATTAGAATGT+TGG 0.395136 4_1:-61798069 Msa0562160:five_prime_UTR
TGCAAGTCCATCACCAAACT+TGG 0.397436 4_1:+61798420 None:intergenic
GTAGATGTGACTTGAACTTT+AGG 0.397533 4_1:-61797928 Msa0562160:five_prime_UTR
ACAGGTTCTCTTACAAATGA+TGG 0.400234 4_1:-61793157 Msa0562160:three_prime_UTR
TTCAACAACTAGGAGGTTTA+CGG 0.401340 4_1:-61793994 Msa0562160:three_prime_UTR
GCAAAATTCTTGCATATTGT+AGG 0.403388 4_1:-61795615 Msa0562160:CDS
TTCTAGATAGTTTCAGCCTA+AGG 0.406108 4_1:-61796455 Msa0562160:five_prime_UTR
CACCACATCAAGACTAGATC+TGG 0.408821 4_1:-61798362 Msa0562160:five_prime_UTR
CACAGCTGCATGAATGCTTC+AGG 0.414144 4_1:+61795702 None:intergenic
TTTGATCCTTTGGAGGGAAA+TGG 0.419347 4_1:-61796874 Msa0562160:five_prime_UTR
CAAGTTCATGACATAATTCA+AGG 0.422170 4_1:+61796745 None:intergenic
TTTCAGCCTAAGGGGTTTGA+AGG 0.423969 4_1:-61796445 Msa0562160:five_prime_UTR
GCCTCCACAAAATCATTCAT+TGG 0.424130 4_1:+61793492 None:intergenic
ATGGAATTTGCATCCATAGA+TGG 0.427094 4_1:+61797474 None:intergenic
GACTCATACAGTCCAACATA+TGG 0.427529 4_1:-61793570 Msa0562160:three_prime_UTR
GGTGGGAGGAGAGGAAGCGC+GGG 0.427545 4_1:+61798482 None:intergenic
CATCAATCCATAGGAACATC+TGG 0.432387 4_1:-61793540 Msa0562160:three_prime_UTR
ACCATACTGAACTGAATCTT+CGG 0.436615 4_1:+61797668 None:intergenic
CTATATCAGTGGCATATGTT+AGG 0.438588 4_1:+61796585 None:intergenic
AACGAGGGGCTTCTGCCCTT+GGG 0.438842 4_1:+61795258 None:intergenic
ACCATAAGAAATGCCATAGT+TGG 0.439383 4_1:+61792905 None:intergenic
CACGAGAGAGACACTATATT+GGG 0.440653 4_1:-61796830 Msa0562160:five_prime_UTR
TGACGTCTATGCTCACTTTG+TGG 0.444260 4_1:+61795783 None:intergenic
AAGAGGTCCACAAAGGGAAT+AGG 0.450550 4_1:-61794187 Msa0562160:three_prime_UTR
CTTGAATTATGTCATGAACT+TGG 0.455075 4_1:-61796744 Msa0562160:five_prime_UTR
TTACGGCTGAGGAACCAGTT+TGG 0.457592 4_1:-61793977 Msa0562160:three_prime_UTR
ATGTTGGAGGGATTTCTTTG+TGG 0.465265 4_1:-61798053 Msa0562160:five_prime_UTR
AAAATACTTGCCATGTTACA+AGG 0.470518 4_1:+61793034 None:intergenic
TTCAGCCTAAGGGGTTTGAA+GGG 0.471787 4_1:-61796444 Msa0562160:five_prime_UTR
AGTTTAAAATCACAATTGAA+TGG 0.472726 4_1:-61797283 Msa0562160:five_prime_UTR
GTCATGTAAGTATCATCAGC+TGG 0.473268 4_1:+61793642 None:intergenic
TACTTGTTAAATCGTTAGCT+TGG 0.476214 4_1:-61797559 Msa0562160:five_prime_UTR
CACTTACGTGTTAGCCGGGT+GGG 0.476618 4_1:-61795171 Msa0562160:CDS
GATTGCATTGGAGCTATAGA+TGG 0.476705 4_1:-61795302 Msa0562160:CDS
AACTAGGAGGTTTACGGCTG+AGG 0.477534 4_1:-61793988 Msa0562160:three_prime_UTR
CTGAATTGTACCACAGTCAA+TGG 0.477932 4_1:-61797528 Msa0562160:five_prime_UTR
ATTGAATGGCAAGGATGCTC+AGG 0.479078 4_1:-61797269 Msa0562160:five_prime_UTR
ATCATAATGCTTAACTTGCA+TGG 0.479752 4_1:+61793799 None:intergenic
GTTGGAGAAGGAAAGGGAAA+AGG 0.480190 4_1:-61793703 Msa0562160:three_prime_UTR
TGTATACAGGAGCAGATGTA+TGG 0.482734 4_1:-61793296 Msa0562160:three_prime_UTR
TGTCGGGACATCATACGAAT+GGG 0.483003 4_1:-61795726 Msa0562160:CDS
GAAGATGAAATGATTGATGT+TGG 0.483282 4_1:-61795960 Msa0562160:CDS
AATGGAAGCATCATCATCAA+TGG 0.485942 4_1:+61797455 None:intergenic
AAATTCACTTACGTGTTAGC+CGG 0.486870 4_1:-61795176 Msa0562160:CDS
GTGGCTTGAGTGGATTTGGA+TGG 0.487993 4_1:-61794019 Msa0562160:three_prime_UTR
TGATGTGATTTCCCATATGT+TGG 0.488779 4_1:+61793558 None:intergenic
TGTAGACCTCGAGTGTATAC+AGG 0.492746 4_1:-61793309 Msa0562160:three_prime_UTR
GATAGAATGACGAGTGGCAT+TGG 0.493232 4_1:-61793462 Msa0562160:three_prime_UTR
AGACATGATCAAATAGCAAA+AGG 0.494951 4_1:+61796283 None:intergenic
CAGCTGTGTCTAAAACTAAG+AGG 0.496642 4_1:-61795687 Msa0562160:CDS
TATGCAAATAAGGCAACCTT+TGG 0.498058 4_1:+61796642 None:intergenic
ATCTGGAAACTACAAATCAT+AGG 0.498111 4_1:-61798345 Msa0562160:five_prime_UTR
CCGACTAGGATCGCTTCTTA+GGG 0.499781 4_1:-61794590 Msa0562160:CDS
TTTGATTCAAATACAATGCA+TGG 0.500520 4_1:+61795844 None:intergenic
GAAACTACAAATCATAGGTA+TGG 0.500805 4_1:-61798340 Msa0562160:five_prime_UTR
ATTGAATGCTTTGATGGAAG+AGG 0.501757 4_1:-61794204 Msa0562160:three_prime_UTR
ATGGAATATGCTTGATGAGT+TGG 0.501804 4_1:-61793277 Msa0562160:three_prime_UTR
GATCTATTTGGTGGCTTGAG+TGG 0.506649 4_1:-61794029 Msa0562160:three_prime_UTR
GAATTTATAGTCCAACCATC+AGG 0.506876 4_1:-61795486 Msa0562160:CDS
TCGAAGGTTGAATAACTCTC+GGG 0.508448 4_1:+61794861 None:intergenic
ATGGAAAGGAGGAAACATAT+TGG 0.509105 4_1:-61795894 Msa0562160:CDS
AATAATAGATGAAGTGGACT+TGG 0.510368 4_1:-61795985 Msa0562160:CDS
TTCTAGGAAAGGCTAAAATG+AGG 0.510742 4_1:+61797738 None:intergenic
CATATGCCACTGATATAGCT+TGG 0.513444 4_1:-61796580 Msa0562160:five_prime_UTR
GTCGAAGGTTGAATAACTCT+CGG 0.514941 4_1:+61794860 None:intergenic
TCTAGATAGTTTCAGCCTAA+GGG 0.515613 4_1:-61796454 Msa0562160:five_prime_UTR
AGGTGGGAGGAGAGGAAGCG+CGG 0.515767 4_1:+61798481 None:intergenic
CTACTGTCAATTGCCTAAAG+TGG 0.518019 4_1:+61792973 None:intergenic
TTAATGTAACAATTTACTCT+CGG 0.519814 4_1:+61797763 None:intergenic
GCGAGAACCAGATGTTCCTA+TGG 0.520724 4_1:+61793533 None:intergenic
AAGCTACTAAGGACGTCTTA+AGG 0.522163 4_1:-61794253 Msa0562160:three_prime_UTR
CCAAAACTAGATGCCAAAAG+AGG 0.522665 4_1:+61796481 None:intergenic
TGTCTAAAACTAAGAGGTAC+GGG 0.523672 4_1:-61795681 Msa0562160:CDS
TTTAATTATGCCTTGTAACA+TGG 0.525070 4_1:-61793044 Msa0562160:three_prime_UTR
CGTGCTGATATACTTGATGA+AGG 0.525531 4_1:-61793612 Msa0562160:three_prime_UTR
CCACAGTTTGATCCTTTGGA+GGG 0.525991 4_1:-61796880 Msa0562160:five_prime_UTR
CAATAACGAAAGTTAAAACC+AGG 0.526440 4_1:+61796773 None:intergenic
ACTGAAATGTGGAACCTGTA+TGG 0.528593 4_1:-61794556 Msa0562160:CDS
AGAACCTAGACAAGCTACTA+AGG 0.529941 4_1:-61794264 Msa0562160:three_prime_UTR
TTGAGAGTGTCATATTGTTG+TGG 0.530137 4_1:-61796063 Msa0562160:five_prime_UTR
AAGATACCAAACAACATCAA+TGG 0.532219 4_1:+61793121 None:intergenic
TCATCCTCCAAGTTTGGTGA+TGG 0.534425 4_1:-61798427 Msa0562160:five_prime_UTR
GTGTCTAAAACTAAGAGGTA+CGG 0.537028 4_1:-61795682 Msa0562160:CDS
AACTACATTAAGCTCCATAC+AGG 0.537498 4_1:+61794542 None:intergenic
AAGAGAGAAGACTGCAGCGT+GGG 0.539887 4_1:-61798618 Msa0562160:five_prime_UTR
CAGCCTAAGGGGTTTGAAGG+GGG 0.540340 4_1:-61796442 Msa0562160:five_prime_UTR
AATTGAAATAATAGATGAAG+TGG 0.540512 4_1:-61795991 Msa0562160:CDS
GACGAGTGGCATTGGACTCA+TGG 0.542017 4_1:-61793454 Msa0562160:three_prime_UTR
ACAATCAGTTGGAGAAGGAA+AGG 0.542959 4_1:-61793710 Msa0562160:three_prime_UTR
TCCACAGTTTGATCCTTTGG+AGG 0.544391 4_1:-61796881 Msa0562160:five_prime_UTR
ATGCATGTAACTTGTTCTCA+AGG 0.545220 4_1:-61797045 Msa0562160:five_prime_UTR
AAAATCACAATTGAATGGCA+AGG 0.545680 4_1:-61797278 Msa0562160:five_prime_UTR
TTCCAGATCTAGTCTTGATG+TGG 0.545939 4_1:+61798360 None:intergenic
AATTCACTTACGTGTTAGCC+GGG 0.546524 4_1:-61795175 Msa0562160:CDS
TAAGCATTATGATGTTCTGA+AGG 0.547520 4_1:-61793789 Msa0562160:three_prime_UTR
ACGTCCTTAGTAGCTTGTCT+AGG 0.548560 4_1:+61794260 None:intergenic
GGATATCGGCACCTGATGGT+TGG 0.548661 4_1:+61795475 None:intergenic
CAATTGGATTAGAATGTTGG+AGG 0.549008 4_1:-61798066 Msa0562160:five_prime_UTR
CAATCAGTTGGAGAAGGAAA+GGG 0.549805 4_1:-61793709 Msa0562160:three_prime_UTR
ATGCTCACTTTGTGGAGAGT+AGG 0.550974 4_1:+61795791 None:intergenic
TAAAATGAGACACAATCAGT+TGG 0.551034 4_1:-61793721 Msa0562160:three_prime_UTR
ACTCATACAGTCCAACATAT+GGG 0.551310 4_1:-61793569 Msa0562160:three_prime_UTR
ATGTTGCCTTTGCTTTATTG+AGG 0.551521 4_1:-61797408 Msa0562160:five_prime_UTR
GACCCTTTAATAATTCCTGA+AGG 0.553305 4_1:-61795098 Msa0562160:intron
GGGTTACTAACTCCATATAG+AGG 0.553737 4_1:-61794931 Msa0562160:CDS
AAATTCAAAATTTCTAGGAA+AGG 0.553868 4_1:+61797727 None:intergenic
AAGAGGTACGGGTATAGTAA+AGG 0.555417 4_1:-61795670 Msa0562160:CDS
CTATGAAATAAGGATTGCAT+TGG 0.556238 4_1:-61795314 Msa0562160:intron
GTCTACTGTAGAAGAGCAAG+TGG 0.558463 4_1:-61795637 Msa0562160:CDS
TGATGGAAGAGGTCCACAAA+GGG 0.560951 4_1:-61794193 Msa0562160:three_prime_UTR
TACAGAAACAAAACAAGGGA+GGG 0.561075 4_1:+61796318 None:intergenic
GTGTCGGGACATCATACGAA+TGG 0.561288 4_1:-61795727 Msa0562160:CDS
ACCTTCGACACTCTTCACTT+CGG 0.561876 4_1:-61794846 Msa0562160:CDS
CTATGTATCTGTCATTCATA+CGG 0.561979 4_1:-61796381 Msa0562160:five_prime_UTR
CGGGATTTATGCTTAAACAA+GGG 0.562360 4_1:-61794951 Msa0562160:CDS
CTATTGTTTAGTATTTGTGG+TGG 0.564348 4_1:+61795453 None:intergenic
AATTGGATTAGAATGTTGGA+GGG 0.564478 4_1:-61798065 Msa0562160:five_prime_UTR
TAAAACCACATGCTGCTAAG+TGG 0.566316 4_1:-61793826 Msa0562160:three_prime_UTR
GCATGCCATACTTGCATTAG+GGG 0.567900 4_1:-61795511 Msa0562160:CDS
AGATTTCCAATTATAGCTAG+TGG 0.571282 4_1:-61794787 Msa0562160:CDS
TATTGTTTAGTATTTGTGGT+GGG 0.571530 4_1:+61795454 None:intergenic
AAGTCCATCACCAAACTTGG+AGG 0.572806 4_1:+61798423 None:intergenic
TTGAAAGAGTATTCCTCTCG+TGG 0.572856 4_1:-61794895 Msa0562160:CDS
GATCATGTCTTGTGTTCATG+AGG 0.574647 4_1:-61796270 Msa0562160:five_prime_UTR
TACGTGTTAGCCGGGTGGGA+AGG 0.575936 4_1:-61795167 Msa0562160:CDS
CACAAAGGGAATAGGCATGA+TGG 0.577973 4_1:-61794179 Msa0562160:three_prime_UTR
ACCTGTAAACGCATGTCAGT+GGG 0.580002 4_1:+61793174 None:intergenic
GGGAAATCACATCAATCCAT+AGG 0.580859 4_1:-61793549 Msa0562160:three_prime_UTR
TTCTGATCAATTGCATGATG+TGG 0.582187 4_1:-61793403 Msa0562160:three_prime_UTR
GCGGGATTTATGCTTAAACA+AGG 0.582707 4_1:-61794952 Msa0562160:CDS
TCAGCCTAAGGGGTTTGAAG+GGG 0.582782 4_1:-61796443 Msa0562160:five_prime_UTR
TGACAAACACACCACATCCA+TGG 0.582991 4_1:+61798221 None:intergenic
TTGGATGGAATTCAACAACT+AGG 0.583860 4_1:-61794004 Msa0562160:three_prime_UTR
GACGAACCATTTCCCTCCAA+AGG 0.584623 4_1:+61796868 None:intergenic
ATTTAAATGAATTGTAACAA+AGG 0.586136 4_1:+61796682 None:intergenic
CTAGATAGTTTCAGCCTAAG+GGG 0.586844 4_1:-61796453 Msa0562160:five_prime_UTR
CATGATGAAGACTACCGACT+AGG 0.590825 4_1:-61794604 Msa0562160:CDS
CATTTCAACCCAATTTACAA+AGG 0.590883 4_1:+61798137 None:intergenic
GGTGTTGTAGAGATCTAAGA+AGG 0.590894 4_1:+61798381 None:intergenic
CAACAATATGACACTCTCAA+AGG 0.591002 4_1:+61796066 None:intergenic
CCCTAAGAAGCGATCCTAGT+CGG 0.592042 4_1:+61794590 None:intergenic
GAGACACAATCAGTTGGAGA+AGG 0.594765 4_1:-61793715 Msa0562160:three_prime_UTR
ACATTCGAGTGAAGGTCCCA+AGG 0.594966 4_1:-61795274 Msa0562160:CDS
TTCTCGCGGAACAAAGCGTA+AGG 0.595584 4_1:-61793517 Msa0562160:three_prime_UTR
GAAGCATATGATCTATTTGG+TGG 0.596948 4_1:-61794038 Msa0562160:three_prime_UTR
AGTGCACACAGATAAGTGTC+GGG 0.599113 4_1:-61795742 Msa0562160:CDS
TCCGAAGTGAAGAGTGTCGA+AGG 0.603229 4_1:+61794845 None:intergenic
TAGTGCACACAGATAAGTGT+CGG 0.605090 4_1:-61795743 Msa0562160:CDS
AACCTGTAAACGCATGTCAG+TGG 0.607127 4_1:+61793173 None:intergenic
TGAGGAAGATAATGACCCAA+AGG 0.608100 4_1:+61798451 None:intergenic
ATATGTAATGAGGACACATC+TGG 0.611084 4_1:-61793071 Msa0562160:three_prime_UTR
ATGGCTGATGCGTTGAACAA+AGG 0.612392 4_1:-61793435 Msa0562160:three_prime_UTR
ACAGAAACAAAACAAGGGAG+GGG 0.612559 4_1:+61796319 None:intergenic
TCATGTAAGTATCATCAGCT+GGG 0.614286 4_1:+61793643 None:intergenic
GGACTGTATGAGTCAACAAT+GGG 0.614523 4_1:+61793579 None:intergenic
TTGCTCATTTGTGCTACATG+TGG 0.617346 4_1:-61796093 Msa0562160:five_prime_UTR
TGAAAGAGTATTCCTCTCGT+GGG 0.617564 4_1:-61794894 Msa0562160:CDS
GGATGCTCAGGAAATATATG+TGG 0.621118 4_1:-61797257 Msa0562160:five_prime_UTR
TGGCACACACATTCGAGTGA+AGG 0.621290 4_1:-61795282 Msa0562160:CDS
AGAGTGTCATATTGTTGTGG+AGG 0.623485 4_1:-61796060 Msa0562160:five_prime_UTR
AATTAATGTGATATGCATTG+TGG 0.623664 4_1:-61794356 Msa0562160:three_prime_UTR
TGCAAGTATGGCATGCAACA+CGG 0.624083 4_1:+61795518 None:intergenic
AAGCTATTACAACTGAAATG+TGG 0.624802 4_1:-61794567 Msa0562160:CDS
GGTGGGATATCGGCACCTGA+TGG 0.626883 4_1:+61795471 None:intergenic
CTACTAAGGACGTCTTAAGG+TGG 0.626964 4_1:-61794250 Msa0562160:three_prime_UTR
CATTCGAGTGAAGGTCCCAA+GGG 0.627188 4_1:-61795273 Msa0562160:CDS
TAGCACTTGAAACGAAATTG+TGG 0.628736 4_1:+61793246 None:intergenic
ACTGTCAACGTATACTTTAG+GGG 0.629430 4_1:+61797980 None:intergenic
ATAAAAGGCATGCAGTACCA+TGG 0.631054 4_1:-61798238 Msa0562160:five_prime_UTR
TGCTCATTTGTGCTACATGT+GGG 0.632800 4_1:-61796092 Msa0562160:five_prime_UTR
CCAATATAGTGTCTCTCTCG+TGG 0.633680 4_1:+61796831 None:intergenic
TCACTTACGTGTTAGCCGGG+TGG 0.637458 4_1:-61795172 Msa0562160:CDS
GATGGAATTCAACAACTAGG+AGG 0.638082 4_1:-61794001 Msa0562160:three_prime_UTR
GTGCTGATATACTTGATGAA+GGG 0.638722 4_1:-61793611 Msa0562160:three_prime_UTR
GGCATGCAGTACCATGGATG+TGG 0.648950 4_1:-61798232 Msa0562160:five_prime_UTR
ATAGGAACATCTGGTTCTCG+CGG 0.649638 4_1:-61793531 Msa0562160:three_prime_UTR
CCAAACTTGGAGGATGAGTG+AGG 0.653884 4_1:+61798433 None:intergenic
GTACAGAAACAAAACAAGGG+AGG 0.654569 4_1:+61796317 None:intergenic
AAATTGCCTCAATAAAGCAA+AGG 0.656398 4_1:+61797402 None:intergenic
TTGATGGAAGAGGTCCACAA+AGG 0.657995 4_1:-61794194 Msa0562160:three_prime_UTR
AATAGTACAGAAACAAAACA+AGG 0.663120 4_1:+61796313 None:intergenic
CCCTCCAAAGGATCAAACTG+TGG 0.664200 4_1:+61796880 None:intergenic
CTGAATGCAAATCCTTCGTG+CGG 0.664659 4_1:+61796943 None:intergenic
GAAGAGAGAAGACTGCAGCG+TGG 0.666341 4_1:-61798619 Msa0562160:five_prime_UTR
ATTACTTCAAGTGAATAATG+CGG 0.666923 4_1:+61794757 None:intergenic
TGGACTGTATGAGTCAACAA+TGG 0.667564 4_1:+61793578 None:intergenic
CGAAGGTTGAATAACTCTCG+GGG 0.668950 4_1:+61794862 None:intergenic
AGATGCTGTTCCTTCCCACC+CGG 0.669494 4_1:+61795157 None:intergenic
TGATGAAGCACTAATTGCTG+AGG 0.680304 4_1:-61794677 Msa0562160:CDS
TATAGTCCAAGCTATATCAG+TGG 0.681278 4_1:+61796574 None:intergenic
AAGATCTAAACAAAACACAA+TGG 0.684613 4_1:+61796527 None:intergenic
TACATCAAAACATTAGAACA+AGG 0.685292 4_1:+61797948 None:intergenic
GTCGGGACATCATACGAATG+GGG 0.688822 4_1:-61795725 Msa0562160:CDS
CAATTGGATAGAATGACGAG+TGG 0.698679 4_1:-61793468 Msa0562160:three_prime_UTR
CATCAAGTATATCAGCACGC+TGG 0.698851 4_1:+61793616 None:intergenic
ATAGTACAGAAACAAAACAA+GGG 0.699034 4_1:+61796314 None:intergenic
TCTGCTCCTGTATACACTCG+AGG 0.699341 4_1:+61793303 None:intergenic
TGTGATTATACCATTGACTG+TGG 0.747584 4_1:+61797518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr4_1:61798631-61798650 Msa0562160:five_prime_UTR 0.0%
!!! TTTTATGATTGTTATAATTA+CGG - chr4_1:61793712-61793731 Msa0562160:three_prime_UTR 10.0%
!!! ATTGTTTTTTGTTTAATTTA+TGG - chr4_1:61794382-61794401 Msa0562160:three_prime_UTR 10.0%
!! TTTATGATTGTTATAATTAC+GGG - chr4_1:61793713-61793732 Msa0562160:three_prime_UTR 15.0%
!! ATGTAAAATTCAAAATTTCT+AGG + chr4_1:61793858-61793877 None:intergenic 15.0%
!! ATTTAAATGAATTGTAACAA+AGG + chr4_1:61794898-61794917 None:intergenic 15.0%
!!! TTTATAACTTTGTTTTCAAT+GGG - chr4_1:61795230-61795249 Msa0562160:CDS 15.0%
!!! TATACTTCATAACTTTTTAA+TGG - chr4_1:61796867-61796886 Msa0562160:five_prime_UTR 15.0%
!!! ATACTTCATAACTTTTTAAT+GGG - chr4_1:61796868-61796887 Msa0562160:five_prime_UTR 15.0%
!! TGTTTCAATTGATAAATATT+TGG - chr4_1:61797158-61797177 Msa0562160:five_prime_UTR 15.0%
!! TTTGTTTCATTTATTAATTG+TGG - chr4_1:61797647-61797666 Msa0562160:five_prime_UTR 15.0%
!! TGTTGTTGATCTTATATAAA+AGG - chr4_1:61793324-61793343 Msa0562160:three_prime_UTR 20.0%
!!! GTTCAATTTTAAGAATCAAT+TGG - chr4_1:61793495-61793514 Msa0562160:three_prime_UTR 20.0%
!! TTAATGTAACAATTTACTCT+CGG + chr4_1:61793817-61793836 None:intergenic 20.0%
!!! AAATTCAAAATTTCTAGGAA+AGG + chr4_1:61793853-61793872 None:intergenic 20.0%
!!! GAATACATATACCTTTAAAA+TGG + chr4_1:61794143-61794162 None:intergenic 20.0%
!!! AGTTTAAAATCACAATTGAA+TGG - chr4_1:61794294-61794313 Msa0562160:three_prime_UTR 20.0%
!!! TCTCTGTTTTTCAAAATAAA+GGG + chr4_1:61794564-61794583 None:intergenic 20.0%
!!! TTCTCTGTTTTTCAAAATAA+AGG + chr4_1:61794565-61794584 None:intergenic 20.0%
!! TGGTGTTCAATTTATAATTA+AGG + chr4_1:61795033-61795052 None:intergenic 20.0%
!!! GTTTATAACTTTGTTTTCAA+TGG - chr4_1:61795229-61795248 Msa0562160:CDS 20.0%
!!! TTTTGTTTCTGTACTATTTT+TGG - chr4_1:61795269-61795288 Msa0562160:CDS 20.0%
!! TTAACAGCATAGATTTATTA+AGG + chr4_1:61795333-61795352 None:intergenic 20.0%
!!! ATGCTGTTAAAAAAAAGTTT+TGG - chr4_1:61795343-61795362 Msa0562160:intron 20.0%
!!! TGCTGTTAAAAAAAAGTTTT+GGG - chr4_1:61795344-61795363 Msa0562160:intron 20.0%
!! AATTGAAATAATAGATGAAG+TGG - chr4_1:61795586-61795605 Msa0562160:CDS 20.0%
!!! CAGATTTTATCCATTTTTTA+AGG - chr4_1:61796147-61796166 Msa0562160:five_prime_UTR 20.0%
!! AATAATGGTACCTTAAAAAA+TGG + chr4_1:61796160-61796179 None:intergenic 20.0%
!!! GGTACCATTATTTTTTTTTA+AGG - chr4_1:61796168-61796187 Msa0562160:five_prime_UTR 20.0%
!! GATGCCTTAAAAAAAAATAA+TGG + chr4_1:61796175-61796194 None:intergenic 20.0%
!! ATGATTTAGTTAGTTGTATA+GGG + chr4_1:61796243-61796262 None:intergenic 20.0%
!! ACTAAATCATCTATGAAATA+AGG - chr4_1:61796253-61796272 Msa0562160:five_prime_UTR 20.0%
!!! CATGAGATAATGTATTTTAT+TGG - chr4_1:61797062-61797081 Msa0562160:five_prime_UTR 20.0%
!! TTGAAACTAAATGCATTTAT+AGG - chr4_1:61797257-61797276 Msa0562160:five_prime_UTR 20.0%
!! AATATTATTGAATGCTTTGA+TGG - chr4_1:61797367-61797386 Msa0562160:five_prime_UTR 20.0%
!!! TTTTATGTGTTGTTTTGTTA+GGG + chr4_1:61797486-61797505 None:intergenic 20.0%
!!! TTTTTATGTGTTGTTTTGTT+AGG + chr4_1:61797487-61797506 None:intergenic 20.0%
!!! ATTTCTAGGAAATAAAATGA+AGG + chr4_1:61797676-61797695 None:intergenic 20.0%
!! AATATACATTGTGTATTTCT+AGG + chr4_1:61797690-61797709 None:intergenic 20.0%
!! TATGGTATAATTATTGTGTT+AGG - chr4_1:61798649-61798668 Msa0562160:five_prime_UTR 20.0%
!! GATACTGAATTTCTTTTGTT+TGG - chr4_1:61792919-61792938 Msa0562160:three_prime_UTR 25.0%
! TGAGATTATCCTTTGTAAAT+TGG - chr4_1:61793431-61793450 Msa0562160:three_prime_UTR 25.0%
! GAGATTATCCTTTGTAAATT+GGG - chr4_1:61793432-61793451 Msa0562160:three_prime_UTR 25.0%
!! AATCAATTGGATTAGAATGT+TGG - chr4_1:61793508-61793527 Msa0562160:three_prime_UTR 25.0%
! TACATCAAAACATTAGAACA+AGG + chr4_1:61793632-61793651 None:intergenic 25.0%
!! TTTTACATTACACAGTTTTG+TGG - chr4_1:61793870-61793889 Msa0562160:intron 25.0%
!! AAATGAGCTTCAAGTATTTT+AGG + chr4_1:61794228-61794247 None:intergenic 25.0%
! CTAAGTGTACATATTCATTA+AGG + chr4_1:61794453-61794472 None:intergenic 25.0%
!! ACTGGATGATGAATTAATTT+TGG - chr4_1:61794588-61794607 Msa0562160:CDS 25.0%
! TATAAAAACTTAACAGAACC+TGG - chr4_1:61794786-61794805 Msa0562160:CDS 25.0%
! AAGATCTAAACAAAACACAA+TGG + chr4_1:61795053-61795072 None:intergenic 25.0%
! CTAACAACATGAAGAAAAAA+AGG + chr4_1:61795076-61795095 None:intergenic 25.0%
! ATAGTACAGAAACAAAACAA+GGG + chr4_1:61795266-61795285 None:intergenic 25.0%
! AATAGTACAGAAACAAAACA+AGG + chr4_1:61795267-61795286 None:intergenic 25.0%
! AAATCATGCTAAAAAAGAGA+TGG - chr4_1:61795664-61795683 Msa0562160:CDS 25.0%
! TTTGATTCAAATACAATGCA+TGG + chr4_1:61795736-61795755 None:intergenic 25.0%
!! ATCTTTCTTCTTTTATCGTT+CGG - chr4_1:61796009-61796028 Msa0562160:CDS 25.0%
! TATTGTTTAGTATTTGTGGT+GGG + chr4_1:61796126-61796145 None:intergenic 25.0%
! TTGTATAGGGATATACTTAA+AGG + chr4_1:61796230-61796249 None:intergenic 25.0%
! GATGATTTAGTTAGTTGTAT+AGG + chr4_1:61796244-61796263 None:intergenic 25.0%
! AACCTTCAGGAATTATTAAA+GGG + chr4_1:61796484-61796503 None:intergenic 25.0%
! TAACCTTCAGGAATTATTAA+AGG + chr4_1:61796485-61796504 None:intergenic 25.0%
!!! TTTGTAGGAAAGTTTTATCT+CGG - chr4_1:61796598-61796617 Msa0562160:five_prime_UTR 25.0%
! ATTACTTCAAGTGAATAATG+CGG + chr4_1:61796823-61796842 None:intergenic 25.0%
! AATTAATGTGATATGCATTG+TGG - chr4_1:61797221-61797240 Msa0562160:five_prime_UTR 25.0%
!! TGCATTTATAGGTTGAAAAA+TGG - chr4_1:61797268-61797287 Msa0562160:five_prime_UTR 25.0%
!!! AAAACTTTGAAAGATCGTTT+TGG - chr4_1:61797515-61797534 Msa0562160:five_prime_UTR 25.0%
!! TCTTTTGTGTATATGTAATG+AGG - chr4_1:61798496-61798515 Msa0562160:five_prime_UTR 25.0%
! ATGTTACAAGGCATAATTAA+AGG + chr4_1:61798534-61798553 None:intergenic 25.0%
! TTTAATTATGCCTTGTAACA+TGG - chr4_1:61798533-61798552 Msa0562160:five_prime_UTR 25.0%
!! AGAAGAAAGAGATTTTGAGT+GGG + chr4_1:61792986-61793005 None:intergenic 30.0%
AAAAAGAAAAGGGCAAAAGA+GGG + chr4_1:61793057-61793076 None:intergenic 30.0%
AATGACCCAAAGGAATAAAA+AGG + chr4_1:61793119-61793138 None:intergenic 30.0%
ATCTGGAAACTACAAATCAT+AGG - chr4_1:61793232-61793251 Msa0562160:three_prime_UTR 30.0%
GAAACTACAAATCATAGGTA+TGG - chr4_1:61793237-61793256 Msa0562160:three_prime_UTR 30.0%
CATTTCAACCCAATTTACAA+AGG + chr4_1:61793443-61793462 None:intergenic 30.0%
! AATTGGATTAGAATGTTGGA+GGG - chr4_1:61793512-61793531 Msa0562160:three_prime_UTR 30.0%
!!! TTTTTGAGTCATTCGAATCT+AGG + chr4_1:61793561-61793580 None:intergenic 30.0%
AACTGTCAACGTATACTTTA+GGG + chr4_1:61793601-61793620 None:intergenic 30.0%
AAACTGTCAACGTATACTTT+AGG + chr4_1:61793602-61793621 None:intergenic 30.0%
! TGATTTCTTTTTCTTGAGCT+TGG - chr4_1:61793764-61793783 Msa0562160:three_prime_UTR 30.0%
! TACTTGTTAAATCGTTAGCT+TGG - chr4_1:61794018-61794037 Msa0562160:three_prime_UTR 30.0%
!! TGATGATGCTTCCATTTTAA+AGG - chr4_1:61794129-61794148 Msa0562160:three_prime_UTR 30.0%
AAATTGCCTCAATAAAGCAA+AGG + chr4_1:61794178-61794197 None:intergenic 30.0%
!! AAGTATTTTAGGCTGAAGTA+TGG + chr4_1:61794217-61794236 None:intergenic 30.0%
TGCTTCAGATATTGACAAAA+TGG + chr4_1:61794270-61794289 None:intergenic 30.0%
AAAATCACAATTGAATGGCA+AGG - chr4_1:61794299-61794318 Msa0562160:three_prime_UTR 30.0%
AGAACAAGTTACATGCATAT+TGG + chr4_1:61794530-61794549 None:intergenic 30.0%
TTGAAAAACAGAGAAAACAC+TGG - chr4_1:61794570-61794589 Msa0562160:CDS 30.0%
CAATAACGAAAGTTAAAACC+AGG + chr4_1:61794807-61794826 None:intergenic 30.0%
CAAGTTCATGACATAATTCA+AGG + chr4_1:61794835-61794854 None:intergenic 30.0%
CTTGAATTATGTCATGAACT+TGG - chr4_1:61794833-61794852 Msa0562160:CDS 30.0%
! GTATCAAAATTTTGAGCCAA+AGG - chr4_1:61794919-61794938 Msa0562160:CDS 30.0%
TTTGGTTGTTATATGGTGTT+TGG - chr4_1:61795165-61795184 Msa0562160:CDS 30.0%
CTATGTATCTGTCATTCATA+CGG - chr4_1:61795196-61795215 Msa0562160:CDS 30.0%
AGACATGATCAAATAGCAAA+AGG + chr4_1:61795297-61795316 None:intergenic 30.0%
CCAATACAGAGTAGATAAAA+AGG + chr4_1:61795451-61795470 None:intergenic 30.0%
! CCTTTTTATCTACTCTGTAT+TGG - chr4_1:61795448-61795467 Msa0562160:CDS 30.0%
! AATAATAGATGAAGTGGACT+TGG - chr4_1:61795592-61795611 Msa0562160:CDS 30.0%
GAAGATGAAATGATTGATGT+TGG - chr4_1:61795617-61795636 Msa0562160:CDS 30.0%
ATGCTAAAAAAGAGATGGAA+AGG - chr4_1:61795669-61795688 Msa0562160:CDS 30.0%
GCAAAATTCTTGCATATTGT+AGG - chr4_1:61795962-61795981 Msa0562160:CDS 30.0%
! TCTTTCTTCTTTTATCGTTC+GGG - chr4_1:61796010-61796029 Msa0562160:CDS 30.0%
CTATTGTTTAGTATTTGTGG+TGG + chr4_1:61796127-61796146 None:intergenic 30.0%
CTGCTATTGTTTAGTATTTG+TGG + chr4_1:61796130-61796149 None:intergenic 30.0%
CTATGAAATAAGGATTGCAT+TGG - chr4_1:61796263-61796282 Msa0562160:five_prime_UTR 30.0%
TAATAATTCCTGAAGGTTAG+TGG - chr4_1:61796486-61796505 Msa0562160:five_prime_UTR 30.0%
!! TTGTAGGAAAGTTTTATCTC+GGG - chr4_1:61796599-61796618 Msa0562160:five_prime_UTR 30.0%
AGATTTCCAATTATAGCTAG+TGG - chr4_1:61796790-61796809 Msa0562160:five_prime_UTR 30.0%
! TCATAACTTTTTAATGGGAG+TGG - chr4_1:61796873-61796892 Msa0562160:five_prime_UTR 30.0%
AAGCTATTACAACTGAAATG+TGG - chr4_1:61797010-61797029 Msa0562160:five_prime_UTR 30.0%
! TATAGGTTGAAAAATGGCAA+AGG - chr4_1:61797274-61797293 Msa0562160:five_prime_UTR 30.0%
TGAAAAATGGCAAAGGATAA+AGG - chr4_1:61797281-61797300 Msa0562160:five_prime_UTR 30.0%
!! ATCATAATGCTTAACTTGCA+TGG + chr4_1:61797781-61797800 None:intergenic 30.0%
TAAGCATTATGATGTTCTGA+AGG - chr4_1:61797788-61797807 Msa0562160:five_prime_UTR 30.0%
!!! ATGTTCTGAAGGTTCTTTTT+GGG - chr4_1:61797799-61797818 Msa0562160:five_prime_UTR 30.0%
TAAAATGAGACACAATCAGT+TGG - chr4_1:61797856-61797875 Msa0562160:five_prime_UTR 30.0%
TTGCAATGATAGCAAAAAGA+AGG - chr4_1:61798363-61798382 Msa0562160:five_prime_UTR 30.0%
!! AAAAAGAAGGAGCTGATTTT+TGG - chr4_1:61798376-61798395 Msa0562160:five_prime_UTR 30.0%
TTTCTACCATTGATGTTGTT+TGG - chr4_1:61798450-61798469 Msa0562160:five_prime_UTR 30.0%
AAGATACCAAACAACATCAA+TGG + chr4_1:61798459-61798478 None:intergenic 30.0%
AAAATACTTGCCATGTTACA+AGG + chr4_1:61798546-61798565 None:intergenic 30.0%
!!! AGTATTTTGAAACATGCAGT+AGG - chr4_1:61798558-61798577 Msa0562160:five_prime_UTR 30.0%
!!! GTATTTTGAAACATGCAGTA+GGG - chr4_1:61798559-61798578 Msa0562160:five_prime_UTR 30.0%
!! GAAGAAAGAGATTTTGAGTG+GGG + chr4_1:61792985-61793004 None:intergenic 35.0%
! GAGAAGAAAGAGATTTTGAG+TGG + chr4_1:61792987-61793006 None:intergenic 35.0%
GAAAAAGGAGAGAAATACAC+TGG - chr4_1:61793018-61793037 Msa0562160:three_prime_UTR 35.0%
CAAAAAGAAAAGGGCAAAAG+AGG + chr4_1:61793058-61793077 None:intergenic 35.0%
! CTCTTTTGCCCTTTTCTTTT+TGG - chr4_1:61793056-61793075 Msa0562160:three_prime_UTR 35.0%
CGCGAAAACCAAAAAGAAAA+GGG + chr4_1:61793067-61793086 None:intergenic 35.0%
!!! CCTTTTCTTTTTGGTTTTCG+CGG - chr4_1:61793065-61793084 Msa0562160:three_prime_UTR 35.0%
! TCCCACCTTTTTATTCCTTT+GGG - chr4_1:61793111-61793130 Msa0562160:three_prime_UTR 35.0%
ACCCAAAGGAATAAAAAGGT+GGG + chr4_1:61793115-61793134 None:intergenic 35.0%
! CAATTGGATTAGAATGTTGG+AGG - chr4_1:61793511-61793530 Msa0562160:three_prime_UTR 35.0%
ACTGTCAACGTATACTTTAG+GGG + chr4_1:61793600-61793619 None:intergenic 35.0%
GTAGATGTGACTTGAACTTT+AGG - chr4_1:61793649-61793668 Msa0562160:three_prime_UTR 35.0%
! TTCTAGGAAAGGCTAAAATG+AGG + chr4_1:61793842-61793861 None:intergenic 35.0%
ACCATACTGAACTGAATCTT+CGG + chr4_1:61793912-61793931 None:intergenic 35.0%
! TGTGATTATACCATTGACTG+TGG + chr4_1:61794062-61794081 None:intergenic 35.0%
ATGGAATTTGCATCCATAGA+TGG + chr4_1:61794106-61794125 None:intergenic 35.0%
!! AATGGAAGCATCATCATCAA+TGG + chr4_1:61794125-61794144 None:intergenic 35.0%
! ATGTTGCCTTTGCTTTATTG+AGG - chr4_1:61794169-61794188 Msa0562160:three_prime_UTR 35.0%
!! ATGCATGTAACTTGTTCTCA+AGG - chr4_1:61794532-61794551 Msa0562160:exon 35.0%
AAATCCACAGTTTGATCCTT+TGG - chr4_1:61794693-61794712 Msa0562160:CDS 35.0%
TATGCAAATAAGGCAACCTT+TGG + chr4_1:61794938-61794957 None:intergenic 35.0%
AGGACTATGGTATGCAAATA+AGG + chr4_1:61794948-61794967 None:intergenic 35.0%
! CTATGTTTGTTACAGGACTA+TGG + chr4_1:61794961-61794980 None:intergenic 35.0%
! TGTTGCTCTATGTTTGTTAC+AGG + chr4_1:61794968-61794987 None:intergenic 35.0%
CTATATCAGTGGCATATGTT+AGG + chr4_1:61794995-61795014 None:intergenic 35.0%
TATAGTCCAAGCTATATCAG+TGG + chr4_1:61795006-61795025 None:intergenic 35.0%
!! TTCATGTTGTTAGCCTCTTT+TGG - chr4_1:61795083-61795102 Msa0562160:intron 35.0%
!!! CTCTTTTGGCATCTAGTTTT+GGG - chr4_1:61795097-61795116 Msa0562160:intron 35.0%
TTCTAGATAGTTTCAGCCTA+AGG - chr4_1:61795122-61795141 Msa0562160:CDS 35.0%
TCTAGATAGTTTCAGCCTAA+GGG - chr4_1:61795123-61795142 Msa0562160:CDS 35.0%
!!! AGCAGGTTTTGGTTGTTATA+TGG - chr4_1:61795158-61795177 Msa0562160:CDS 35.0%
TACAGAAACAAAACAAGGGA+GGG + chr4_1:61795262-61795281 None:intergenic 35.0%
CAACAATATGACACTCTCAA+AGG + chr4_1:61795514-61795533 None:intergenic 35.0%
!! TTGAGAGTGTCATATTGTTG+TGG - chr4_1:61795514-61795533 Msa0562160:CDS 35.0%
CTAAAAAAGAGATGGAAAGG+AGG - chr4_1:61795672-61795691 Msa0562160:CDS 35.0%
ATGGAAAGGAGGAAACATAT+TGG - chr4_1:61795683-61795702 Msa0562160:CDS 35.0%
! GTGTCTAAAACTAAGAGGTA+CGG - chr4_1:61795895-61795914 Msa0562160:CDS 35.0%
! TGTCTAAAACTAAGAGGTAC+GGG - chr4_1:61795896-61795915 Msa0562160:CDS 35.0%
GAATTTATAGTCCAACCATC+AGG - chr4_1:61796091-61796110 Msa0562160:five_prime_UTR 35.0%
! TAGTATTTGTGGTGGGATAT+CGG + chr4_1:61796119-61796138 None:intergenic 35.0%
!! CAGCTAATACATTTTGAGTG+GGG + chr4_1:61796364-61796383 None:intergenic 35.0%
!! GCAGCTAATACATTTTGAGT+GGG + chr4_1:61796365-61796384 None:intergenic 35.0%
! TGCAGCTAATACATTTTGAG+TGG + chr4_1:61796366-61796385 None:intergenic 35.0%
AAATTCACTTACGTGTTAGC+CGG - chr4_1:61796401-61796420 Msa0562160:five_prime_UTR 35.0%
GACCCTTTAATAATTCCTGA+AGG - chr4_1:61796479-61796498 Msa0562160:five_prime_UTR 35.0%
! TAACTTTTCCACTAACCTTC+AGG + chr4_1:61796497-61796516 None:intergenic 35.0%
!! TGTAGGAAAGTTTTATCTCG+GGG - chr4_1:61796600-61796619 Msa0562160:five_prime_UTR 35.0%
CGGGATTTATGCTTAAACAA+GGG - chr4_1:61796626-61796645 Msa0562160:five_prime_UTR 35.0%
! TGATAACGAACTCCTCTATA+TGG + chr4_1:61796661-61796680 None:intergenic 35.0%
! AACGTCATTGAGAGAACTTT+TGG - chr4_1:61796754-61796773 Msa0562160:five_prime_UTR 35.0%
TTCATCATGCTGTTGTGTTT+GGG + chr4_1:61796962-61796981 None:intergenic 35.0%
AACTACATTAAGCTCCATAC+AGG + chr4_1:61797038-61797057 None:intergenic 35.0%
ATTGAATGCTTTGATGGAAG+AGG - chr4_1:61797373-61797392 Msa0562160:five_prime_UTR 35.0%
!! TGAATGTCGTAGCTGTTTTA+CGG - chr4_1:61797444-61797463 Msa0562160:five_prime_UTR 35.0%
GGTGAAGCATATGATCTATT+TGG - chr4_1:61797536-61797555 Msa0562160:five_prime_UTR 35.0%
GAAGCATATGATCTATTTGG+TGG - chr4_1:61797539-61797558 Msa0562160:five_prime_UTR 35.0%
TTGGATGGAATTCAACAACT+AGG - chr4_1:61797573-61797592 Msa0562160:five_prime_UTR 35.0%
TTCAACAACTAGGAGGTTTA+CGG - chr4_1:61797583-61797602 Msa0562160:five_prime_UTR 35.0%
CTTATAAGTTCTTCCCAAAC+TGG + chr4_1:61797617-61797636 None:intergenic 35.0%
! CATAGTGTGTGTTTGATGAT+AGG - chr4_1:61797728-61797747 Msa0562160:five_prime_UTR 35.0%
!!! GATGTTCTGAAGGTTCTTTT+TGG - chr4_1:61797798-61797817 Msa0562160:five_prime_UTR 35.0%
!!! TGTTCTGAAGGTTCTTTTTG+GGG - chr4_1:61797800-61797819 Msa0562160:five_prime_UTR 35.0%
TCATGTAAGTATCATCAGCT+GGG + chr4_1:61797937-61797956 None:intergenic 35.0%
! GTGCTGATATACTTGATGAA+GGG - chr4_1:61797966-61797985 Msa0562160:five_prime_UTR 35.0%
ACTCATACAGTCCAACATAT+GGG - chr4_1:61798008-61798027 Msa0562160:five_prime_UTR 35.0%
TGATGTGATTTCCCATATGT+TGG + chr4_1:61798022-61798041 None:intergenic 35.0%
! TCCAATGAATGATTTTGTGG+AGG - chr4_1:61798084-61798103 Msa0562160:five_prime_UTR 35.0%
TTCTGATCAATTGCATGATG+TGG - chr4_1:61798174-61798193 Msa0562160:five_prime_UTR 35.0%
ATGGAATATGCTTGATGAGT+TGG - chr4_1:61798300-61798319 Msa0562160:five_prime_UTR 35.0%
TAGCACTTGAAACGAAATTG+TGG + chr4_1:61798334-61798353 None:intergenic 35.0%
ACAGGTTCTCTTACAAATGA+TGG - chr4_1:61798420-61798439 Msa0562160:five_prime_UTR 35.0%
ATATGTAATGAGGACACATC+TGG - chr4_1:61798506-61798525 Msa0562160:five_prime_UTR 35.0%
AACATGCAGTAGGGAAAAAA+AGG - chr4_1:61798568-61798587 Msa0562160:five_prime_UTR 35.0%
!! CAATATGTAGTTGCCACTTT+AGG - chr4_1:61798591-61798610 Msa0562160:five_prime_UTR 35.0%
TTATTGTGTTAGGCCAACTA+TGG - chr4_1:61798659-61798678 Msa0562160:five_prime_UTR 35.0%
ACCATAAGAAATGCCATAGT+TGG + chr4_1:61798675-61798694 None:intergenic 35.0%
TCTCTCAACAGCGAAGAAAA+AGG - chr4_1:61793003-61793022 Msa0562160:three_prime_UTR 40.0%
CCGCGAAAACCAAAAAGAAA+AGG + chr4_1:61793068-61793087 None:intergenic 40.0%
CAAAGGAATAAAAAGGTGGG+AGG + chr4_1:61793112-61793131 None:intergenic 40.0%
! CTCCCACCTTTTTATTCCTT+TGG - chr4_1:61793110-61793129 Msa0562160:three_prime_UTR 40.0%
GACCCAAAGGAATAAAAAGG+TGG + chr4_1:61793116-61793135 None:intergenic 40.0%
TGAGGAAGATAATGACCCAA+AGG + chr4_1:61793129-61793148 None:intergenic 40.0%
! GGTGTTGTAGAGATCTAAGA+AGG + chr4_1:61793199-61793218 None:intergenic 40.0%
!! TTCCAGATCTAGTCTTGATG+TGG + chr4_1:61793220-61793239 None:intergenic 40.0%
! ATAAAAGGCATGCAGTACCA+TGG - chr4_1:61793339-61793358 Msa0562160:three_prime_UTR 40.0%
ATGTTGGAGGGATTTCTTTG+TGG - chr4_1:61793524-61793543 Msa0562160:three_prime_UTR 40.0%
TCCGAAGATTCAGTTCAGTA+TGG - chr4_1:61793908-61793927 Msa0562160:intron 40.0%
CTGAATTGTACCACAGTCAA+TGG - chr4_1:61794049-61794068 Msa0562160:three_prime_UTR 40.0%
!!! GTTACTTTTGCTGCCATCTA+TGG - chr4_1:61794090-61794109 Msa0562160:three_prime_UTR 40.0%
GGATGCTCAGGAAATATATG+TGG - chr4_1:61794320-61794339 Msa0562160:three_prime_UTR 40.0%
!!! CTTTTTTATTCTCCGCACGA+AGG - chr4_1:61794622-61794641 Msa0562160:CDS 40.0%
! TTTGATCCTTTGGAGGGAAA+TGG - chr4_1:61794703-61794722 Msa0562160:CDS 40.0%
CACGAGAGAGACACTATATT+GGG - chr4_1:61794747-61794766 Msa0562160:CDS 40.0%
CATATGCCACTGATATAGCT+TGG - chr4_1:61794997-61795016 Msa0562160:intron 40.0%
CCAAAACTAGATGCCAAAAG+AGG + chr4_1:61795099-61795118 None:intergenic 40.0%
!! CCTCTTTTGGCATCTAGTTT+TGG - chr4_1:61795096-61795115 Msa0562160:intron 40.0%
CTAGATAGTTTCAGCCTAAG+GGG - chr4_1:61795124-61795143 Msa0562160:CDS 40.0%
ACAGAAACAAAACAAGGGAG+GGG + chr4_1:61795261-61795280 None:intergenic 40.0%
GTACAGAAACAAAACAAGGG+AGG + chr4_1:61795263-61795282 None:intergenic 40.0%
GATCATGTCTTGTGTTCATG+AGG - chr4_1:61795307-61795326 Msa0562160:intron 40.0%
TTGCTCATTTGTGCTACATG+TGG - chr4_1:61795484-61795503 Msa0562160:CDS 40.0%
TGCTCATTTGTGCTACATGT+GGG - chr4_1:61795485-61795504 Msa0562160:CDS 40.0%
! AGAGTGTCATATTGTTGTGG+AGG - chr4_1:61795517-61795536 Msa0562160:CDS 40.0%
TAGTGCACACAGATAAGTGT+CGG - chr4_1:61795834-61795853 Msa0562160:CDS 40.0%
! CAGCTGTGTCTAAAACTAAG+AGG - chr4_1:61795890-61795909 Msa0562160:CDS 40.0%
! AAGAGGTACGGGTATAGTAA+AGG - chr4_1:61795907-61795926 Msa0562160:CDS 40.0%
TTGCATGCCATACTTGCATT+AGG - chr4_1:61796064-61796083 Msa0562160:five_prime_UTR 40.0%
TGCATGCCATACTTGCATTA+GGG - chr4_1:61796065-61796084 Msa0562160:five_prime_UTR 40.0%
TTCTTCCCCTAATGCAAGTA+TGG + chr4_1:61796074-61796093 None:intergenic 40.0%
GATTGCATTGGAGCTATAGA+TGG - chr4_1:61796275-61796294 Msa0562160:five_prime_UTR 40.0%
! TTTTCTTCCACGAAAACGAG+GGG + chr4_1:61796336-61796355 None:intergenic 40.0%
! CTTTTCTTCCACGAAAACGA+GGG + chr4_1:61796337-61796356 None:intergenic 40.0%
! TCTTTTCTTCCACGAAAACG+AGG + chr4_1:61796338-61796357 None:intergenic 40.0%
AATTCACTTACGTGTTAGCC+GGG - chr4_1:61796402-61796421 Msa0562160:five_prime_UTR 40.0%
!! AAAGTTTTATCTCGGGGATG+CGG - chr4_1:61796606-61796625 Msa0562160:five_prime_UTR 40.0%
GCGGGATTTATGCTTAAACA+AGG - chr4_1:61796625-61796644 Msa0562160:five_prime_UTR 40.0%
GGGTTACTAACTCCATATAG+AGG - chr4_1:61796646-61796665 Msa0562160:five_prime_UTR 40.0%
!! TTGAAAGAGTATTCCTCTCG+TGG - chr4_1:61796682-61796701 Msa0562160:five_prime_UTR 40.0%
!! TGAAAGAGTATTCCTCTCGT+GGG - chr4_1:61796683-61796702 Msa0562160:five_prime_UTR 40.0%
! AATAACTCTCGGGGATTTTG+TGG + chr4_1:61796709-61796728 None:intergenic 40.0%
TCGAAGGTTGAATAACTCTC+GGG + chr4_1:61796719-61796738 None:intergenic 40.0%
GTCGAAGGTTGAATAACTCT+CGG + chr4_1:61796720-61796739 None:intergenic 40.0%
! TCAGTGCCACTAGCTATAAT+TGG + chr4_1:61796799-61796818 None:intergenic 40.0%
! TGATGAAGCACTAATTGCTG+AGG - chr4_1:61796900-61796919 Msa0562160:five_prime_UTR 40.0%
CTTCATCATGCTGTTGTGTT+TGG + chr4_1:61796963-61796982 None:intergenic 40.0%
ACTGAAATGTGGAACCTGTA+TGG - chr4_1:61797021-61797040 Msa0562160:five_prime_UTR 40.0%
AGAACCTAGACAAGCTACTA+AGG - chr4_1:61797313-61797332 Msa0562160:five_prime_UTR 40.0%
AAGCTACTAAGGACGTCTTA+AGG - chr4_1:61797324-61797343 Msa0562160:five_prime_UTR 40.0%
!! CTTAAGGTGGACTGATGATA+TGG - chr4_1:61797340-61797359 Msa0562160:five_prime_UTR 40.0%
!!! ATGTGTTGTTTTGTTAGGGC+TGG + chr4_1:61797482-61797501 None:intergenic 40.0%
GATGGAATTCAACAACTAGG+AGG - chr4_1:61797576-61797595 Msa0562160:five_prime_UTR 40.0%
TAAAACCACATGCTGCTAAG+TGG - chr4_1:61797751-61797770 Msa0562160:five_prime_UTR 40.0%
! TTAGATGTTTTTCCGCTGCT+CGG + chr4_1:61797830-61797849 None:intergenic 40.0%
ACAATCAGTTGGAGAAGGAA+AGG - chr4_1:61797867-61797886 Msa0562160:five_prime_UTR 40.0%
CAATCAGTTGGAGAAGGAAA+GGG - chr4_1:61797868-61797887 Msa0562160:five_prime_UTR 40.0%
GTCATGTAAGTATCATCAGC+TGG + chr4_1:61797938-61797957 None:intergenic 40.0%
! CGTGCTGATATACTTGATGA+AGG - chr4_1:61797965-61797984 Msa0562160:five_prime_UTR 40.0%
GGACTGTATGAGTCAACAAT+GGG + chr4_1:61798001-61798020 None:intergenic 40.0%
TGGACTGTATGAGTCAACAA+TGG + chr4_1:61798002-61798021 None:intergenic 40.0%
GACTCATACAGTCCAACATA+TGG - chr4_1:61798007-61798026 Msa0562160:five_prime_UTR 40.0%
GGGAAATCACATCAATCCAT+AGG - chr4_1:61798028-61798047 Msa0562160:five_prime_UTR 40.0%
CATCAATCCATAGGAACATC+TGG - chr4_1:61798037-61798056 Msa0562160:five_prime_UTR 40.0%
! GGCTCCAATGAATGATTTTG+TGG - chr4_1:61798081-61798100 Msa0562160:five_prime_UTR 40.0%
GCCTCCACAAAATCATTCAT+TGG + chr4_1:61798088-61798107 None:intergenic 40.0%
! TGATTTTGTGGAGGCTCAAT+TGG - chr4_1:61798093-61798112 Msa0562160:five_prime_UTR 40.0%
CAATTGGATAGAATGACGAG+TGG - chr4_1:61798109-61798128 Msa0562160:five_prime_UTR 40.0%
TGTATACAGGAGCAGATGTA+TGG - chr4_1:61798281-61798300 Msa0562160:five_prime_UTR 40.0%
CTACTGTCAATTGCCTAAAG+TGG + chr4_1:61798607-61798626 None:intergenic 40.0%
GCCAACTATGGCATTTCTTA+TGG - chr4_1:61798671-61798690 Msa0562160:five_prime_UTR 40.0%
GAATAAAAAGGTGGGAGGAG+AGG + chr4_1:61793107-61793126 None:intergenic 45.0%
! TCATCCTCCAAGTTTGGTGA+TGG - chr4_1:61793150-61793169 Msa0562160:three_prime_UTR 45.0%
AAGTCCATCACCAAACTTGG+AGG + chr4_1:61793157-61793176 None:intergenic 45.0%
TGCAAGTCCATCACCAAACT+TGG + chr4_1:61793160-61793179 None:intergenic 45.0%
CACCACATCAAGACTAGATC+TGG - chr4_1:61793215-61793234 Msa0562160:three_prime_UTR 45.0%
TGACAAACACACCACATCCA+TGG + chr4_1:61793359-61793378 None:intergenic 45.0%
ATTGAATGGCAAGGATGCTC+AGG - chr4_1:61794308-61794327 Msa0562160:three_prime_UTR 45.0%
CTGAATGCAAATCCTTCGTG+CGG + chr4_1:61794637-61794656 None:intergenic 45.0%
TCCACAGTTTGATCCTTTGG+AGG - chr4_1:61794696-61794715 Msa0562160:CDS 45.0%
CCACAGTTTGATCCTTTGGA+GGG - chr4_1:61794697-61794716 Msa0562160:CDS 45.0%
CCAATATAGTGTCTCTCTCG+TGG + chr4_1:61794749-61794768 None:intergenic 45.0%
CCACGAGAGAGACACTATAT+TGG - chr4_1:61794746-61794765 Msa0562160:CDS 45.0%
TTTCAGCCTAAGGGGTTTGA+AGG - chr4_1:61795132-61795151 Msa0562160:CDS 45.0%
TTCAGCCTAAGGGGTTTGAA+GGG - chr4_1:61795133-61795152 Msa0562160:CDS 45.0%
ATGCTCACTTTGTGGAGAGT+AGG + chr4_1:61795789-61795808 None:intergenic 45.0%
TGACGTCTATGCTCACTTTG+TGG + chr4_1:61795797-61795816 None:intergenic 45.0%
AGTGCACACAGATAAGTGTC+GGG - chr4_1:61795835-61795854 Msa0562160:CDS 45.0%
TGTCGGGACATCATACGAAT+GGG - chr4_1:61795851-61795870 Msa0562160:CDS 45.0%
GTCTACTGTAGAAGAGCAAG+TGG - chr4_1:61795940-61795959 Msa0562160:CDS 45.0%
TGCAAGTATGGCATGCAACA+CGG + chr4_1:61796062-61796081 None:intergenic 45.0%
GCATGCCATACTTGCATTAG+GGG - chr4_1:61796066-61796085 Msa0562160:five_prime_UTR 45.0%
!! AAGTTTTATCTCGGGGATGC+GGG - chr4_1:61796607-61796626 Msa0562160:five_prime_UTR 45.0%
CGAAGGTTGAATAACTCTCG+GGG + chr4_1:61796718-61796737 None:intergenic 45.0%
ACCTTCGACACTCTTCACTT+CGG - chr4_1:61796731-61796750 Msa0562160:five_prime_UTR 45.0%
! CATGATGAAGACTACCGACT+AGG - chr4_1:61796973-61796992 Msa0562160:five_prime_UTR 45.0%
! ACGTCCTTAGTAGCTTGTCT+AGG + chr4_1:61797320-61797339 None:intergenic 45.0%
CTACTAAGGACGTCTTAAGG+TGG - chr4_1:61797327-61797346 Msa0562160:five_prime_UTR 45.0%
TTGATGGAAGAGGTCCACAA+AGG - chr4_1:61797383-61797402 Msa0562160:five_prime_UTR 45.0%
TGATGGAAGAGGTCCACAAA+GGG - chr4_1:61797384-61797403 Msa0562160:five_prime_UTR 45.0%
AAGAGGTCCACAAAGGGAAT+AGG - chr4_1:61797390-61797409 Msa0562160:five_prime_UTR 45.0%
CATCATGCCTATTCCCTTTG+TGG + chr4_1:61797400-61797419 None:intergenic 45.0%
CACAAAGGGAATAGGCATGA+TGG - chr4_1:61797398-61797417 Msa0562160:five_prime_UTR 45.0%
! GATCTATTTGGTGGCTTGAG+TGG - chr4_1:61797548-61797567 Msa0562160:five_prime_UTR 45.0%
! TTTGGTGGCTTGAGTGGATT+TGG - chr4_1:61797554-61797573 Msa0562160:five_prime_UTR 45.0%
! GTTTTCCACTTAGCAGCATG+TGG + chr4_1:61797759-61797778 None:intergenic 45.0%
GAGACACAATCAGTTGGAGA+AGG - chr4_1:61797862-61797881 Msa0562160:five_prime_UTR 45.0%
CATCAAGTATATCAGCACGC+TGG + chr4_1:61797964-61797983 None:intergenic 45.0%
!! ATAGGAACATCTGGTTCTCG+CGG - chr4_1:61798046-61798065 Msa0562160:five_prime_UTR 45.0%
GATAGAATGACGAGTGGCAT+TGG - chr4_1:61798115-61798134 Msa0562160:five_prime_UTR 45.0%
ATGGCTGATGCGTTGAACAA+AGG - chr4_1:61798142-61798161 Msa0562160:five_prime_UTR 45.0%
TGTAGACCTCGAGTGTATAC+AGG - chr4_1:61798268-61798287 Msa0562160:five_prime_UTR 45.0%
ACCTGTAAACGCATGTCAGT+GGG + chr4_1:61798406-61798425 None:intergenic 45.0%
AACCTGTAAACGCATGTCAG+TGG + chr4_1:61798407-61798426 None:intergenic 45.0%
!!! TATATTTTATAAAATTTTGT+AGG - chr4_1:61796583-61796602 Msa0562160:five_prime_UTR 5.0%
AAGAGAGAAGACTGCAGCGT+GGG - chr4_1:61792959-61792978 Msa0562160:three_prime_UTR 50.0%
CCAAACTTGGAGGATGAGTG+AGG + chr4_1:61793147-61793166 None:intergenic 50.0%
CCTCACTCATCCTCCAAGTT+TGG - chr4_1:61793144-61793163 Msa0562160:three_prime_UTR 50.0%
CCCTCCAAAGGATCAAACTG+TGG + chr4_1:61794700-61794719 None:intergenic 50.0%
GACGAACCATTTCCCTCCAA+AGG + chr4_1:61794712-61794731 None:intergenic 50.0%
TCAGCCTAAGGGGTTTGAAG+GGG - chr4_1:61795134-61795153 Msa0562160:CDS 50.0%
! TTTGAAGGGGGAGCAGGTTT+TGG - chr4_1:61795147-61795166 Msa0562160:CDS 50.0%
GTGTCGGGACATCATACGAA+TGG - chr4_1:61795850-61795869 Msa0562160:CDS 50.0%
GTCGGGACATCATACGAATG+GGG - chr4_1:61795852-61795871 Msa0562160:CDS 50.0%
CACAGCTGCATGAATGCTTC+AGG + chr4_1:61795878-61795897 None:intergenic 50.0%
TGGCACACACATTCGAGTGA+AGG - chr4_1:61796295-61796314 Msa0562160:five_prime_UTR 50.0%
ACATTCGAGTGAAGGTCCCA+AGG - chr4_1:61796303-61796322 Msa0562160:five_prime_UTR 50.0%
CATTCGAGTGAAGGTCCCAA+GGG - chr4_1:61796304-61796323 Msa0562160:five_prime_UTR 50.0%
!! TCCGAAGTGAAGAGTGTCGA+AGG + chr4_1:61796735-61796754 None:intergenic 50.0%
ACCGACTAGGATCGCTTCTT+AGG - chr4_1:61796986-61797005 Msa0562160:five_prime_UTR 50.0%
CCCTAAGAAGCGATCCTAGT+CGG + chr4_1:61796990-61797009 None:intergenic 50.0%
CCGACTAGGATCGCTTCTTA+GGG - chr4_1:61796987-61797006 Msa0562160:five_prime_UTR 50.0%
! GTGGCTTGAGTGGATTTGGA+TGG - chr4_1:61797558-61797577 Msa0562160:five_prime_UTR 50.0%
AACTAGGAGGTTTACGGCTG+AGG - chr4_1:61797589-61797608 Msa0562160:five_prime_UTR 50.0%
TTACGGCTGAGGAACCAGTT+TGG - chr4_1:61797600-61797619 Msa0562160:five_prime_UTR 50.0%
TACGGCTGAGGAACCAGTTT+GGG - chr4_1:61797601-61797620 Msa0562160:five_prime_UTR 50.0%
GCGAGAACCAGATGTTCCTA+TGG + chr4_1:61798047-61798066 None:intergenic 50.0%
TTCTCGCGGAACAAAGCGTA+AGG - chr4_1:61798060-61798079 Msa0562160:five_prime_UTR 50.0%
TCTGCTCCTGTATACACTCG+AGG + chr4_1:61798277-61798296 None:intergenic 50.0%
GAAGAGAGAAGACTGCAGCG+TGG - chr4_1:61792958-61792977 Msa0562160:three_prime_UTR 55.0%
GGCATGCAGTACCATGGATG+TGG - chr4_1:61793345-61793364 Msa0562160:three_prime_UTR 55.0%
CAGCCTAAGGGGTTTGAAGG+GGG - chr4_1:61795135-61795154 Msa0562160:CDS 55.0%
GGATATCGGCACCTGATGGT+TGG + chr4_1:61796105-61796124 None:intergenic 55.0%
TCACTTACGTGTTAGCCGGG+TGG - chr4_1:61796405-61796424 Msa0562160:five_prime_UTR 55.0%
CACTTACGTGTTAGCCGGGT+GGG - chr4_1:61796406-61796425 Msa0562160:five_prime_UTR 55.0%
AGATGCTGTTCCTTCCCACC+CGG + chr4_1:61796423-61796442 None:intergenic 55.0%
!! TTTTGGGGAAGACCGAGCAG+CGG - chr4_1:61797815-61797834 Msa0562160:five_prime_UTR 55.0%
! GACGAGTGGCATTGGACTCA+TGG - chr4_1:61798123-61798142 Msa0562160:five_prime_UTR 55.0%
GCCCACTGACATGCGTTTAC+AGG - chr4_1:61798402-61798421 Msa0562160:five_prime_UTR 55.0%
GCTCCCCCTTCAAACCCCTT+AGG + chr4_1:61795141-61795160 None:intergenic 60.0%
AAGGGGTTTGAAGGGGGAGC+AGG - chr4_1:61795141-61795160 Msa0562160:CDS 60.0%
GGTGGGATATCGGCACCTGA+TGG + chr4_1:61796109-61796128 None:intergenic 60.0%
AACGAGGGGCTTCTGCCCTT+GGG + chr4_1:61796322-61796341 None:intergenic 60.0%
AAACGAGGGGCTTCTGCCCT+TGG + chr4_1:61796323-61796342 None:intergenic 60.0%
! GCAGAAGCCCCTCGTTTTCG+TGG - chr4_1:61796326-61796345 Msa0562160:five_prime_UTR 60.0%
TACGTGTTAGCCGGGTGGGA+AGG - chr4_1:61796410-61796429 Msa0562160:five_prime_UTR 60.0%
! GGGATTTTGTGGCCCACGAG+AGG + chr4_1:61796698-61796717 None:intergenic 60.0%
AGGTGGGAGGAGAGGAAGCG+CGG + chr4_1:61793099-61793118 None:intergenic 65.0%
! GGTGGGAGGAGAGGAAGCGC+GGG + chr4_1:61793098-61793117 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 61792896 61798703 61792896 ID=Msa0562160;Name=Msa0562160
chr4_1 mRNA 61792896 61798703 61792896 ID=Msa0562160-mRNA-1;Parent=Msa0562160;Name=Msa0562160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=2646|1|1|1|1|0.75|4|1541|432
chr4_1 exon 61792896 61793849 61792896 ID=Msa0562160-mRNA-1:exon:19527;Parent=Msa0562160-mRNA-1
chr4_1 exon 61793962 61794994 61793962 ID=Msa0562160-mRNA-1:exon:19526;Parent=Msa0562160-mRNA-1
chr4_1 exon 61795099 61795324 61795099 ID=Msa0562160-mRNA-1:exon:19525;Parent=Msa0562160-mRNA-1
chr4_1 exon 61795431 61798703 61795431 ID=Msa0562160-mRNA-1:exon:19524;Parent=Msa0562160-mRNA-1
chr4_1 five_prime_UTR 61796058 61798703 61796058 ID=Msa0562160-mRNA-1:five_prime_utr;Parent=Msa0562160-mRNA-1
chr4_1 CDS 61795431 61796057 61795431 ID=Msa0562160-mRNA-1:cds;Parent=Msa0562160-mRNA-1
chr4_1 CDS 61795099 61795324 61795099 ID=Msa0562160-mRNA-1:cds;Parent=Msa0562160-mRNA-1
chr4_1 CDS 61794549 61794994 61794549 ID=Msa0562160-mRNA-1:cds;Parent=Msa0562160-mRNA-1
chr4_1 three_prime_UTR 61793962 61794548 61793962 ID=Msa0562160-mRNA-1:three_prime_utr;Parent=Msa0562160-mRNA-1
chr4_1 three_prime_UTR 61792896 61793849 61792896 ID=Msa0562160-mRNA-1:three_prime_utr;Parent=Msa0562160-mRNA-1
Gene Sequence

>Msa0562160

ATGTCAAATCTAGATAGTGTTGAAGACGTAAGCAATGATGAACGAATTGAAATAATAGATGAAGTGGACTTGGATGAAGATGAAATGATTGATGTTGGAATGTCTATTCAAATGCTAGTTTTAAATCATGCTAAAAAAGAGATGGAAAGGAGGAAACATATTGGTTCTGTTGTCTTATTGTGTCATGCTGTCCATGCATTGTATTTGAATCAAATCTTATCAACATGTATGCATAGTCGAGTCACCTACTCTCCACAAAGTGAGCATAGACGTCATGAGTTAATGAGTTATCTAGTGCACACAGATAAGTGTCGGGACATCATACGAATGGGGCCTGAAGCATTCATGCAGCTGTGTCTAAAACTAAGAGGTACGGGTATAGTAAAGGATACTATAAAGTCTACTGTAGAAGAGCAAGTGGCAAAATTCTTGCATATTGTAGGACATAATGTTAAAAATCGTACTGTATCTTTCTTCTTTTATCGTTCGGGAGAGACTGTTAGTCGTCACTTTCACACCGTGTTGCATGCCATACTTGCATTAGGGGAAGAATTTATAGTCCAACCATCAGGTGCCGATATCCCACCACAAATACTAAACAATAGCAGATTTTATCCATTTTTTAAGGATTGCATTGGAGCTATAGATGGCACACACATTCGAGTGAAGGTCCCAAGGGCAGAAGCCCCTCGTTTTCGTGGAAGAAAAGAGCACCCCACTCAAAATGTATTAGCTGCATGTAATTTCGACATGAAATTCACTTACGTGTTAGCCGGGTGGGAAGGAACAGCATCTGACTCTAGAATATTAAAAGATGCTTTAACTAAAGAAGACCCTTTAATAATTCCTGAAGGAAAGTTTTATCTCGGGGATGCGGGATTTATGCTTAAACAAGGGTTACTAACTCCATATAGAGGAGTTCGTTATCACTTGAAAGAGTATTCCTCTCGTGGGCCACAAAATCCCCGAGAGTTATTCAACCTTCGACACTCTTCACTTCGGAACGTCATTGAGAGAACTTTTGGTGTGTTAAAAAAGAGATTTCCAATTATAGCTAGTGGCACTGAACCGCATTATTCACTTGAAGTAATGATAGACATAGTATTTGCTTGTTGTATACTTCATAACTTTTTAATGGGAGTGGACATTGATGAAGCACTAATTGCTGAGGTTGATCATGAACTGCTTCAAAATGACATAGATAGATCCCAAACACAACAGCATGATGAAGACTACCGACTAGGATCGCTTCTTAGGGAAGCTATTACAACTGAAATGTGGAACCTGTATGGAGCTTAA
Protein sequence

>Msa0562160

MSNLDSVEDVSNDERIEIIDEVDLDEDEMIDVGMSIQMLVLNHAKKEMERRKHIGSVVLLCHAVHALYLNQILSTCMHSRVTYSPQSEHRRHELMSYLVHTDKCRDIIRMGPEAFMQLCLKLRGTGIVKDTIKSTVEEQVAKFLHIVGHNVKNRTVSFFFYRSGETVSRHFHTVLHAILALGEEFIVQPSGADIPPQILNNSRFYPFFKDCIGAIDGTHIRVKVPRAEAPRFRGRKEHPTQNVLAACNFDMKFTYVLAGWEGTASDSRILKDALTKEDPLIIPEGKFYLGDAGFMLKQGLLTPYRGVRYHLKEYSSRGPQNPRELFNLRHSSLRNVIERTFGVLKKRFPIIASGTEPHYSLEVMIDIVFACCILHNFLMGVDIDEALIAEVDHELLQNDIDRSQTQQHDEDYRLGSLLREAITTEMWNLYGA*