AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031350 MtrunA17_Chr7g0226311 94.675 338 18 0 95 432 1 338 0.0 669
Msa0031350 MtrunA17_Chr6g0477141 46.102 295 150 5 90 378 125 416 3.96e-86 271
Msa0031350 MtrunA17_Chr6g0478531 41.261 349 181 6 103 430 38 383 6.86e-86 267
Msa0031350 MtrunA17_Chr1g0207391 39.222 334 189 4 105 427 90 420 8.22e-82 258
Msa0031350 MtrunA17_Chr1g0172731 44.136 324 157 8 103 417 66 374 4.00e-77 245
Msa0031350 MtrunA17_Chr8g0391981 39.650 343 182 4 104 430 78 411 5.36e-77 245
Msa0031350 MtrunA17_Chr1g0190171 43.519 324 159 8 103 417 66 374 4.36e-76 243
Msa0031350 MtrunA17_Chr4g0018411 69.655 145 44 0 286 430 9 153 6.86e-70 218
Msa0031350 MtrunA17_Chr1g0182341 32.220 419 208 13 45 432 4 377 1.75e-54 186
Msa0031350 MtrunA17_Chr2g0321401 44.776 201 95 4 103 292 65 260 4.06e-48 165
Msa0031350 MtrunA17_Chr2g0285471 44.670 197 93 4 107 292 1 192 2.05e-46 159
Msa0031350 MtrunA17_Chr8g0334561 43.147 197 104 3 103 292 66 261 3.07e-45 158
Msa0031350 MtrunA17_Chr7g0267201 42.581 155 80 2 115 260 6 160 9.07e-35 127
Msa0031350 MtrunA17_Chr2g0302711 85.484 62 9 0 1 62 1 62 4.07e-29 108
Msa0031350 MtrunA17_Chr4g0018401 51.923 104 49 1 30 132 25 128 4.44e-25 99.8
Msa0031350 MtrunA17_Chr2g0327851 26.537 309 192 11 135 423 34 327 1.54e-11 65.5
Msa0031350 MtrunA17_Chr8g0361831 90.323 31 3 0 1 31 1 31 3.64e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031350 AT5G41980.1 38.081 344 184 8 101 430 39 367 3.12e-68 221
Msa0031350 AT1G43722.1 37.402 254 149 4 104 347 66 319 5.89e-47 164
Msa0031350 AT5G35695.1 40.000 190 87 6 253 427 25 202 1.85e-36 133
Msa0031350 AT5G28730.1 31.140 228 123 6 86 305 4 205 1.28e-28 114
Msa0031350 AT5G28950.1 54.118 85 39 0 194 278 8 92 2.26e-28 109
Msa0031350 AT3G30525.1 37.821 156 88 4 215 363 1 154 3.44e-25 101
Msa0031350 AT3G55350.1 28.807 243 122 9 210 426 182 399 9.70e-18 85.1

Find 259 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTATCCTTTGTAAAT+TGG 0.132740 1_1:-58083055 Msa0031350:five_prime_UTR
TGTTGTTGATCTTATATAAA+AGG 0.139981 1_1:-58083164 Msa0031350:five_prime_UTR
ACTGGATGATGAATTAATTT+TGG 0.165135 1_1:-58081897 Msa0031350:five_prime_UTR
TTGAAACTAAATGCATTTAT+AGG 0.171784 1_1:-58079227 Msa0031350:three_prime_UTR
TGTTTCAATTGATAAATATT+TGG 0.173013 1_1:-58079326 Msa0031350:three_prime_UTR
TGGTGTTCAATTTATAATTA+AGG 0.187981 1_1:+58081455 None:intergenic
TTCATGTTGTTAGCCTCTTT+TGG 0.232792 1_1:-58081402 Msa0031350:five_prime_UTR
TAACCTTCAGGAATTATTAA+AGG 0.236127 1_1:+58080002 None:intergenic
GCCAACTATGGCATTTCTTA+TGG 0.249341 1_1:-58077777 Msa0031350:three_prime_UTR
TGTTGCTTTATGTTTGTTAC+AGG 0.261529 1_1:+58081520 None:intergenic
ACCGACTAGGATCGCTTCTT+AGG 0.268580 1_1:-58079498 Msa0031350:CDS
TTAACAGCATAGATTTATTA+AGG 0.269972 1_1:+58081155 None:intergenic
GGTGAAGCATATGATCTATT+TGG 0.277405 1_1:-58078948 Msa0031350:three_prime_UTR
TGCTTCAGATATTGACAAAA+TGG 0.285272 1_1:+58082218 None:intergenic
AATATTATTGAATGCTTTGA+TGG 0.286306 1_1:-58079117 Msa0031350:three_prime_UTR
CCAATACAGAGTAGATAAAA+AGG 0.286642 1_1:+58081036 None:intergenic
AGGACTATGGTATGCAAATA+AGG 0.288726 1_1:+58081540 None:intergenic
AACTGTCAACGTATACTTTA+GGG 0.290786 1_1:+58082888 None:intergenic
AAATCCACAGTTTGATCCTT+TGG 0.296640 1_1:-58081792 Msa0031350:five_prime_UTR
ATGTAAAATTCAAAATTTCT+AGG 0.299221 1_1:+58082630 None:intergenic
CTTCATCATGCTGTTGTGTT+TGG 0.300163 1_1:+58079524 None:intergenic
TTATGTTTGTTACAGGACTA+TGG 0.301173 1_1:+58081527 None:intergenic
GCCCACTGACATGCGTTTAC+AGG 0.303601 1_1:-58078081 Msa0031350:three_prime_UTR
AAACTGTCAACGTATACTTT+AGG 0.304620 1_1:+58082887 None:intergenic
AGGTGGGAGGAGAGGAAGGG+CGG 0.308738 1_1:+58083392 None:intergenic
CTAAGTGTACATATTCATTA+AGG 0.313022 1_1:+58082035 None:intergenic
GAATACATATACCTTTAAAA+TGG 0.323737 1_1:+58082345 None:intergenic
GATGAACGAATTGAAATAAT+AGG 0.331328 1_1:-58080906 Msa0031350:CDS
TTTGGTGGCTTGAGCGGATT+TGG 0.332495 1_1:-58078930 Msa0031350:three_prime_UTR
CCTCACTCATCCTCCAAGTT+TGG 0.333782 1_1:-58083344 Msa0031350:five_prime_UTR
TCTCTCAACAGCGAAGAAAA+AGG 0.334650 1_1:-58083485 Msa0031350:five_prime_UTR
CAATATGTAGTTGCCACTTT+AGG 0.335899 1_1:-58077891 Msa0031350:three_prime_UTR
TTTATGATTGTTATAATTAC+GGG 0.337366 1_1:-58082772 Msa0031350:five_prime_UTR
TCAGTGCCACTAGCTATAAT+TGG 0.339150 1_1:+58079688 None:intergenic
TTGCATGCCATACTTGCATT+AGG 0.341517 1_1:-58080420 Msa0031350:CDS
TGCATGCCATACTTGCATTA+GGG 0.346393 1_1:-58080419 Msa0031350:CDS
TTTCTACCATTGATGTTGTT+TGG 0.346439 1_1:-58078033 Msa0031350:three_prime_UTR
AATGACCCAAAGGAATAAAA+AGG 0.346566 1_1:+58083372 None:intergenic
TTCTTCCCCTAATGCAAGTA+TGG 0.350341 1_1:+58080413 None:intergenic
CTTAAGGTGGACTGATGATA+TGG 0.352770 1_1:-58079144 Msa0031350:three_prime_UTR
TATGGTATAATTATTGTGTT+AGG 0.354740 1_1:-58077799 Msa0031350:three_prime_UTR
CTTATAAGTTCTTCCCAAAC+TGG 0.355871 1_1:+58078870 None:intergenic
TTCATCATGCTGTTGTGTTT+GGG 0.356496 1_1:+58079525 None:intergenic
CCACGAGAGAGACACTATAT+TGG 0.363230 1_1:-58081739 Msa0031350:five_prime_UTR
ATGTTACAAGGCATAATTAA+AGG 0.367451 1_1:+58077952 None:intergenic
TACGGCTGAGGAACCAGTTT+GGG 0.367849 1_1:-58078883 Msa0031350:three_prime_UTR
TGATAACGAACTCCTCTATA+TGG 0.368095 1_1:+58079826 None:intergenic
AAAACTTTGAAAGATCGTTT+TGG 0.370453 1_1:-58078969 Msa0031350:three_prime_UTR
AACGTCATTGAGAGAACTTT+TGG 0.372184 1_1:-58079730 Msa0031350:CDS
AACCTTCAGGAATTATTAAA+GGG 0.372770 1_1:+58080003 None:intergenic
GGTGGGAGGAGAGGAAGGGC+GGG 0.375400 1_1:+58083393 None:intergenic
GAGATTATCCTTTGTAAATT+GGG 0.375445 1_1:-58083054 Msa0031350:five_prime_UTR
TTATTGTGTTAGGCCAACTA+TGG 0.376735 1_1:-58077789 Msa0031350:three_prime_UTR
TAGTATTTGTGGTGGGATAT+CGG 0.378152 1_1:+58080368 None:intergenic
AGAACAAGTTACATGCATAT+TGG 0.380546 1_1:+58081958 None:intergenic
AAACGAGGGGCTTCTGCCCT+TGG 0.380938 1_1:+58080164 None:intergenic
CATCATGCCTATTCCCTTTG+TGG 0.385222 1_1:+58079087 None:intergenic
TCCGAAGATTCAGTTCAGTA+TGG 0.386490 1_1:-58082577 Msa0031350:five_prime_UTR
CTGCTATTGTTTAGTATTTG+TGG 0.387161 1_1:+58080357 None:intergenic
AATCAATTGGATTAGAATGT+TGG 0.388316 1_1:-58082978 Msa0031350:five_prime_UTR
TTTGGTTGTTATATGGTGTT+TGG 0.390288 1_1:-58081320 Msa0031350:five_prime_UTR
GTAGATGTGACTTGAACTTT+AGG 0.397533 1_1:-58082837 Msa0031350:five_prime_UTR
ACAGGTTCTCTTACAAATGA+TGG 0.400234 1_1:-58078063 Msa0031350:three_prime_UTR
TTCAACAACTAGGAGGTTTA+CGG 0.401340 1_1:-58078901 Msa0031350:three_prime_UTR
GCAAAATTCTTGCATATTGT+AGG 0.403388 1_1:-58080522 Msa0031350:CDS
TTCTAGATAGTTTCAGCCTA+AGG 0.406108 1_1:-58081363 Msa0031350:five_prime_UTR
CACCACATCAAGACTAGATC+TGG 0.408821 1_1:-58083273 Msa0031350:five_prime_UTR
TGCAGGTCCATCACCAAACT+TGG 0.409807 1_1:+58083331 None:intergenic
CACAGCTGCATGAATGCTTC+AGG 0.414144 1_1:+58080609 None:intergenic
TTTGATCCTTTGGAGGGAAA+TGG 0.419347 1_1:-58081782 Msa0031350:five_prime_UTR
TTTCAGCCTAAGGGGTTTGA+AGG 0.423969 1_1:-58081353 Msa0031350:five_prime_UTR
GCCTCCACAAAATCATTCAT+TGG 0.424130 1_1:+58078398 None:intergenic
ATGGAATTTGCATCCATAGA+TGG 0.427094 1_1:+58082382 None:intergenic
GACTCATACAGTCCAACATA+TGG 0.427529 1_1:-58078476 Msa0031350:three_prime_UTR
AAAGATGCTTTAACTAAAGA+AGG 0.428793 1_1:-58080026 Msa0031350:CDS
GTTGTTGATCTTATATAAAA+GGG 0.432281 1_1:-58083163 Msa0031350:five_prime_UTR
CATCAATCCATAGGAACATC+TGG 0.432387 1_1:-58078446 Msa0031350:three_prime_UTR
ACCATACTGAACTGAATCTT+CGG 0.436615 1_1:+58082576 None:intergenic
CTATATCAGTGGCATATGTT+AGG 0.438588 1_1:+58081493 None:intergenic
AACGAGGGGCTTCTGCCCTT+GGG 0.438842 1_1:+58080165 None:intergenic
ACCATAAGAAATGCCATAGT+TGG 0.439383 1_1:+58077776 None:intergenic
CACGAGAGAGACACTATATT+GGG 0.440653 1_1:-58081738 Msa0031350:five_prime_UTR
TGACGTCTATGCTCACTTTG+TGG 0.444260 1_1:+58080690 None:intergenic
AAGAGGTCCACAAAGGGAAT+AGG 0.450550 1_1:-58079094 Msa0031350:three_prime_UTR
AATAATAGGTGAAGTGGACT+TGG 0.453590 1_1:-58080892 Msa0031350:CDS
TTACGGCTGAGGAACCAGTT+TGG 0.457592 1_1:-58078884 Msa0031350:three_prime_UTR
ATGTTGGAGGGATTTCTTTG+TGG 0.465265 1_1:-58082962 Msa0031350:five_prime_UTR
CTTGAGTTATGTCATGAACT+TGG 0.466599 1_1:-58081652 Msa0031350:five_prime_UTR
AAAATACTTGCCATGTTACA+AGG 0.470518 1_1:+58077940 None:intergenic
TTCAGCCTAAGGGGTTTGAA+GGG 0.471787 1_1:-58081352 Msa0031350:five_prime_UTR
AGTTTAAAATCACAATTGAA+TGG 0.472726 1_1:-58082191 Msa0031350:five_prime_UTR
GTCATGTAAGTATCATCAGC+TGG 0.473268 1_1:+58078548 None:intergenic
TACTTGTTAAATCGTTAGCT+TGG 0.476214 1_1:-58082467 Msa0031350:five_prime_UTR
CACTTACGTGTTAGCCGGGT+GGG 0.476618 1_1:-58080078 Msa0031350:CDS
GATTGCATTGGAGCTATAGA+TGG 0.476705 1_1:-58080209 Msa0031350:CDS
AACTAGGAGGTTTACGGCTG+AGG 0.477534 1_1:-58078895 Msa0031350:three_prime_UTR
CTGAATTGTACCACAGTCAA+TGG 0.477932 1_1:-58082436 Msa0031350:five_prime_UTR
GATCGAATGACGAGTGGCAT+TGG 0.478811 1_1:-58078368 Msa0031350:three_prime_UTR
ATTGAATGGCAAGGATGCTC+AGG 0.479078 1_1:-58082177 Msa0031350:five_prime_UTR
ATCATAATGCTTAACTTGCA+TGG 0.479752 1_1:+58078706 None:intergenic
GTTGGAGAAGGAAAGGGAAA+AGG 0.480190 1_1:-58078609 Msa0031350:three_prime_UTR
TGTATACAGGAGCAGATGTA+TGG 0.482734 1_1:-58078202 Msa0031350:three_prime_UTR
GATAGATCAAGAGAAGTTGC+AGG 0.482833 1_1:+58083314 None:intergenic
TGTCGGGACATCATACGAAT+GGG 0.483003 1_1:-58080633 Msa0031350:CDS
GAAGATGAAATGATTGATGT+TGG 0.483282 1_1:-58080867 Msa0031350:CDS
AATGGAAGCATCATCATCAA+TGG 0.485942 1_1:+58082363 None:intergenic
AAATTCACTTACGTGTTAGC+CGG 0.486870 1_1:-58080083 Msa0031350:CDS
TGATGTGATTTCCCATATGT+TGG 0.488779 1_1:+58078464 None:intergenic
TGTAGACCTCGAGTGTATAC+AGG 0.492746 1_1:-58078215 Msa0031350:three_prime_UTR
AGACATGATCAAATAGCAAA+AGG 0.494951 1_1:+58081191 None:intergenic
CAGCTGTGTCTAAAACTAAG+AGG 0.496642 1_1:-58080594 Msa0031350:CDS
TATGCAAATAAGGCAACCTT+TGG 0.498058 1_1:+58081550 None:intergenic
ATCTGGAAACTACAAATCAT+AGG 0.498111 1_1:-58083256 Msa0031350:five_prime_UTR
CCGACTAGGATCGCTTCTTA+GGG 0.499781 1_1:-58079497 Msa0031350:CDS
TTTGATTCAAATACAATGCA+TGG 0.500520 1_1:+58080751 None:intergenic
GAAACTACAAATCATAGGTA+TGG 0.500805 1_1:-58083251 Msa0031350:five_prime_UTR
ATTGAATGCTTTGATGGAAG+AGG 0.501757 1_1:-58079111 Msa0031350:three_prime_UTR
ATGGAATATGCTTGATGAGT+TGG 0.501804 1_1:-58078183 Msa0031350:three_prime_UTR
TTTGGGGAAGACCGAGCAGC+GGG 0.506138 1_1:-58078668 Msa0031350:three_prime_UTR
GAATTTATAGTCCAACCATC+AGG 0.506876 1_1:-58080393 Msa0031350:CDS
TCGAAGGTTGAATAACTCTC+GGG 0.508448 1_1:+58079768 None:intergenic
ATGGAAAGGAGGAAACATAT+TGG 0.509105 1_1:-58080801 Msa0031350:CDS
TTCTAGGAAAGGCTAAAATG+AGG 0.510742 1_1:+58082646 None:intergenic
CATATGCCACTGATATAGCT+TGG 0.513444 1_1:-58081488 Msa0031350:five_prime_UTR
GTCGAAGGTTGAATAACTCT+CGG 0.514941 1_1:+58079767 None:intergenic
TCTAGATAGTTTCAGCCTAA+GGG 0.515613 1_1:-58081362 Msa0031350:five_prime_UTR
CTACTGTCAATTGCCTAAAG+TGG 0.518019 1_1:+58077878 None:intergenic
GATCTATTTGGTGGCTTGAG+CGG 0.518366 1_1:-58078936 Msa0031350:three_prime_UTR
TTAATGTAACAATTTACTCT+CGG 0.519814 1_1:+58082671 None:intergenic
GCGAGAACCAGATGTTCCTA+TGG 0.520724 1_1:+58078439 None:intergenic
AAGCTACTAAGGACGTCTTA+AGG 0.522163 1_1:-58079160 Msa0031350:three_prime_UTR
CCAAAACTAGATGCCAAAAG+AGG 0.522665 1_1:+58081389 None:intergenic
TGTCTAAAACTAAGAGGTAC+GGG 0.523672 1_1:-58080588 Msa0031350:CDS
TTTAATTATGCCTTGTAACA+TGG 0.525070 1_1:-58077950 Msa0031350:three_prime_UTR
CGTGCTGATATACTTGATGA+AGG 0.525531 1_1:-58078518 Msa0031350:three_prime_UTR
CCACAGTTTGATCCTTTGGA+GGG 0.525991 1_1:-58081788 Msa0031350:five_prime_UTR
CAATAACGAAAGTTAAAACC+AGG 0.526440 1_1:+58081681 None:intergenic
ACTGAAATGTGGAACCTGTA+TGG 0.528593 1_1:-58079463 Msa0031350:CDS
AGAACCTAGACAAGCTACTA+AGG 0.529941 1_1:-58079171 Msa0031350:three_prime_UTR
TTGAGAGTGTCATATTGTTG+TGG 0.530137 1_1:-58080970 Msa0031350:five_prime_UTR
TTGCTCATTTGTACTACATG+TGG 0.530641 1_1:-58081000 Msa0031350:five_prime_UTR
AAGATACCAAACAACATCAA+TGG 0.532219 1_1:+58078027 None:intergenic
GTGTCTAAAACTAAGAGGTA+CGG 0.537028 1_1:-58080589 Msa0031350:CDS
AACTACATTAAGCTCCATAC+AGG 0.537498 1_1:+58079449 None:intergenic
AAGAGAGAAGACTGCAGCGT+GGG 0.539887 1_1:-58083529 Msa0031350:five_prime_UTR
CAGCCTAAGGGGTTTGAAGG+GGG 0.540340 1_1:-58081350 Msa0031350:five_prime_UTR
ACAATCAGTTGGAGAAGGAA+AGG 0.542959 1_1:-58078616 Msa0031350:three_prime_UTR
TCCACAGTTTGATCCTTTGG+AGG 0.544391 1_1:-58081789 Msa0031350:five_prime_UTR
GACGAGTGGCATTGGACTCA+TGG 0.544824 1_1:-58078360 Msa0031350:three_prime_UTR
ATGCATGTAACTTGTTCTCA+AGG 0.545220 1_1:-58081953 Msa0031350:five_prime_UTR
GTGGCTTGAGCGGATTTGGA+TGG 0.545278 1_1:-58078926 Msa0031350:three_prime_UTR
AAAATCACAATTGAATGGCA+AGG 0.545680 1_1:-58082186 Msa0031350:five_prime_UTR
TTCCAGATCTAGTCTTGATG+TGG 0.545939 1_1:+58083271 None:intergenic
AATTCACTTACGTGTTAGCC+GGG 0.546524 1_1:-58080082 Msa0031350:CDS
TAAGCATTATGATGTTCTGA+AGG 0.547520 1_1:-58078696 Msa0031350:three_prime_UTR
TCATCCTCCAAGTTTGGTGA+TGG 0.548237 1_1:-58083338 Msa0031350:five_prime_UTR
ACGTCCTTAGTAGCTTGTCT+AGG 0.548560 1_1:+58079167 None:intergenic
GGATATCGGCACCTGATGGT+TGG 0.548661 1_1:+58080382 None:intergenic
CAATCAGTTGGAGAAGGAAA+GGG 0.549805 1_1:-58078615 Msa0031350:three_prime_UTR
AAAAGGTGGGAGGAGAGGAA+GGG 0.550727 1_1:+58083389 None:intergenic
ATGCTCACTTTGTGGAGAGT+AGG 0.550974 1_1:+58080698 None:intergenic
TAAAATGAGACACAATCAGT+TGG 0.551034 1_1:-58078627 Msa0031350:three_prime_UTR
ACTCATACAGTCCAACATAT+GGG 0.551310 1_1:-58078475 Msa0031350:three_prime_UTR
GGGTTACTAACTCCATATAG+AGG 0.553737 1_1:-58079838 Msa0031350:CDS
AAATTCAAAATTTCTAGGAA+AGG 0.553868 1_1:+58082635 None:intergenic
ATGTTGCCTTTGCTTTATTG+AGG 0.554736 1_1:-58082316 Msa0031350:five_prime_UTR
AAGAGGTACGGGTATAGTAA+AGG 0.555417 1_1:-58080577 Msa0031350:CDS
CTATGAAATAAGGATTGCAT+TGG 0.556238 1_1:-58080221 Msa0031350:intron
GTCTACTGTAGAAGAGCAAG+TGG 0.558463 1_1:-58080544 Msa0031350:CDS
CAATTGGATTAGAATGTTGG+AGG 0.559116 1_1:-58082975 Msa0031350:five_prime_UTR
TGATGGAAGAGGTCCACAAA+GGG 0.560951 1_1:-58079100 Msa0031350:three_prime_UTR
TACAGAAACAAAACAAGGGA+GGG 0.561075 1_1:+58081226 None:intergenic
GTGTCGGGACATCATACGAA+TGG 0.561288 1_1:-58080634 Msa0031350:CDS
ACCTTCGACACTCTTCACTT+CGG 0.561876 1_1:-58079753 Msa0031350:CDS
CTATGTATCTGTCATTCATA+CGG 0.561979 1_1:-58081289 Msa0031350:five_prime_UTR
CGGGATTTATGCTTAAACAA+GGG 0.562360 1_1:-58079858 Msa0031350:CDS
CTATTGTTTAGTATTTGTGG+TGG 0.564348 1_1:+58080360 None:intergenic
AATTGGATTAGAATGTTGGA+GGG 0.564478 1_1:-58082974 Msa0031350:five_prime_UTR
AATTGAAATAATAGGTGAAG+TGG 0.566210 1_1:-58080898 Msa0031350:CDS
TAAAACCACATGCTGCTAAG+TGG 0.566316 1_1:-58078733 Msa0031350:three_prime_UTR
GCATGCCATACTTGCATTAG+GGG 0.567900 1_1:-58080418 Msa0031350:CDS
GGCCCTTTAATAATTCCTGA+AGG 0.568983 1_1:-58080005 Msa0031350:intron
AGATTTCCAATTATAGCTAG+TGG 0.571282 1_1:-58079694 Msa0031350:CDS
TATTGTTTAGTATTTGTGGT+GGG 0.571530 1_1:+58080361 None:intergenic
TTGAAAGAGTATTCCTCTCG+TGG 0.572856 1_1:-58079802 Msa0031350:CDS
GATCATGTCTTGTGTTCATG+AGG 0.574647 1_1:-58081178 Msa0031350:five_prime_UTR
TACGTGTTAGCCGGGTGGGA+AGG 0.575936 1_1:-58080074 Msa0031350:CDS
CACAAAGGGAATAGGCATGA+TGG 0.577973 1_1:-58079086 Msa0031350:three_prime_UTR
ACCTGTAAACGCATGTCAGT+GGG 0.580002 1_1:+58078080 None:intergenic
GGGAAATCACATCAATCCAT+AGG 0.580859 1_1:-58078455 Msa0031350:three_prime_UTR
TTCTGATCAATTGCATGATG+TGG 0.582187 1_1:-58078309 Msa0031350:three_prime_UTR
GCGGGATTTATGCTTAAACA+AGG 0.582707 1_1:-58079859 Msa0031350:CDS
TCAGCCTAAGGGGTTTGAAG+GGG 0.582782 1_1:-58081351 Msa0031350:five_prime_UTR
TGACAAACACACCACATCCA+TGG 0.582991 1_1:+58083131 None:intergenic
TTGGATGGAATTCAACAACT+AGG 0.583860 1_1:-58078911 Msa0031350:three_prime_UTR
GACGAACCATTTCCCTCCAA+AGG 0.584623 1_1:+58081776 None:intergenic
TGCTCATTTGTACTACATGT+GGG 0.584692 1_1:-58080999 Msa0031350:five_prime_UTR
CAAGTTCATGACATAACTCA+AGG 0.585801 1_1:+58081653 None:intergenic
ATTTAAATGAATTGTAACAA+AGG 0.586136 1_1:+58081590 None:intergenic
CTAGATAGTTTCAGCCTAAG+GGG 0.586844 1_1:-58081361 Msa0031350:five_prime_UTR
CATGATGAAGACTACCGACT+AGG 0.590825 1_1:-58079511 Msa0031350:CDS
CATTTCAACCCAATTTACAA+AGG 0.590883 1_1:+58083046 None:intergenic
GGTGTTGTAGAGATCTAAGA+AGG 0.590894 1_1:+58083292 None:intergenic
CAACAATATGACACTCTCAA+AGG 0.591002 1_1:+58080973 None:intergenic
CCCTAAGAAGCGATCCTAGT+CGG 0.592042 1_1:+58079497 None:intergenic
GAGACACAATCAGTTGGAGA+AGG 0.594765 1_1:-58078621 Msa0031350:three_prime_UTR
ACATTCGAGTGAAGGTCCCA+AGG 0.594966 1_1:-58080181 Msa0031350:CDS
TTCTCGCGGAACAAAGCGTA+AGG 0.595584 1_1:-58078423 Msa0031350:three_prime_UTR
GAAGCATATGATCTATTTGG+TGG 0.596948 1_1:-58078945 Msa0031350:three_prime_UTR
AGTGCACACAGATAAGTGTC+GGG 0.599113 1_1:-58080649 Msa0031350:CDS
AGATGTTGTTCCTTCCCACC+CGG 0.602796 1_1:+58080064 None:intergenic
TCCGAAGTGAAGAGTGTCGA+AGG 0.603229 1_1:+58079752 None:intergenic
TAGTGCACACAGATAAGTGT+CGG 0.605090 1_1:-58080650 Msa0031350:CDS
ATGGTTGATGCGTTGAACAA+AGG 0.606063 1_1:-58078341 Msa0031350:three_prime_UTR
AACCTGTAAACGCATGTCAG+TGG 0.607127 1_1:+58078079 None:intergenic
TGAGGAAGATAATGACCCAA+AGG 0.608100 1_1:+58083362 None:intergenic
ATATGTAATGAGGACACATC+TGG 0.611084 1_1:-58077977 Msa0031350:three_prime_UTR
ACAGAAACAAAACAAGGGAG+GGG 0.612559 1_1:+58081227 None:intergenic
TCATGTAAGTATCATCAGCT+GGG 0.614286 1_1:+58078549 None:intergenic
GGACTGTATGAGTCAACAAT+GGG 0.614523 1_1:+58078485 None:intergenic
TGAAAGAGTATTCCTCTCGT+GGG 0.617564 1_1:-58079801 Msa0031350:CDS
AGGTCCATCACCAAACTTGG+AGG 0.619724 1_1:+58083334 None:intergenic
GGATGCTCAGGAAATATATG+TGG 0.621118 1_1:-58082165 Msa0031350:five_prime_UTR
TGGCACACACATTCGAGTGA+AGG 0.621290 1_1:-58080189 Msa0031350:CDS
AGAGTGTCATATTGTTGTGG+AGG 0.623485 1_1:-58080967 Msa0031350:five_prime_UTR
AATTAATGTGATATGCATTG+TGG 0.623664 1_1:-58079263 Msa0031350:three_prime_UTR
AAGCTATTACAACTGAAATG+TGG 0.624802 1_1:-58079474 Msa0031350:CDS
GGTGGGATATCGGCACCTGA+TGG 0.626883 1_1:+58080378 None:intergenic
CTACTAAGGACGTCTTAAGG+TGG 0.626964 1_1:-58079157 Msa0031350:three_prime_UTR
CATTCGAGTGAAGGTCCCAA+GGG 0.627188 1_1:-58080180 Msa0031350:CDS
TAAAAGGGCATGCAGTACCA+TGG 0.627754 1_1:-58083148 Msa0031350:five_prime_UTR
TAGCACTTGAAACGAAATTG+TGG 0.628736 1_1:+58078152 None:intergenic
TCATGAAGCACTAATTGCTG+AGG 0.629026 1_1:-58079584 Msa0031350:CDS
ACTGTCAACGTATACTTTAG+GGG 0.629430 1_1:+58082889 None:intergenic
CCAATATAGTGTCTCTCTCG+TGG 0.633680 1_1:+58081739 None:intergenic
TCACTTACGTGTTAGCCGGG+TGG 0.637458 1_1:-58080079 Msa0031350:CDS
GATGGAATTCAACAACTAGG+AGG 0.638082 1_1:-58078908 Msa0031350:three_prime_UTR
GTGCTGATATACTTGATGAA+GGG 0.638722 1_1:-58078517 Msa0031350:three_prime_UTR
GGCATGCAGTACCATGGATG+TGG 0.648950 1_1:-58083142 Msa0031350:five_prime_UTR
ATAGGAACATCTGGTTCTCG+CGG 0.649638 1_1:-58078437 Msa0031350:three_prime_UTR
AAACTGCCTCAATAAAGCAA+AGG 0.653650 1_1:+58082310 None:intergenic
CCAAACTTGGAGGATGAGTG+AGG 0.653884 1_1:+58083344 None:intergenic
GTACAGAAACAAAACAAGGG+AGG 0.654569 1_1:+58081225 None:intergenic
TTGATGGAAGAGGTCCACAA+AGG 0.657995 1_1:-58079101 Msa0031350:three_prime_UTR
AATAGTACAGAAACAAAACA+AGG 0.663120 1_1:+58081221 None:intergenic
CAATTGGATCGAATGACGAG+TGG 0.663242 1_1:-58078374 Msa0031350:three_prime_UTR
CCCTCCAAAGGATCAAACTG+TGG 0.664200 1_1:+58081788 None:intergenic
GAAGAGAGAAGACTGCAGCG+TGG 0.666341 1_1:-58083530 Msa0031350:five_prime_UTR
ATTACTTCAAGTGAATAATG+CGG 0.666923 1_1:+58079664 None:intergenic
TGGACTGTATGAGTCAACAA+TGG 0.667564 1_1:+58078484 None:intergenic
CGAAGGTTGAATAACTCTCG+GGG 0.668950 1_1:+58079769 None:intergenic
TATAGTCCAAGCTATATCAG+TGG 0.681278 1_1:+58081482 None:intergenic
AAGATCTAAACAAAACACAA+TGG 0.684613 1_1:+58081435 None:intergenic
TACATCAAAACATTAGAACA+AGG 0.685292 1_1:+58082857 None:intergenic
GTCGGGACATCATACGAATG+GGG 0.688822 1_1:-58080632 Msa0031350:CDS
CATCAAGTATATCAGCACGC+TGG 0.698851 1_1:+58078522 None:intergenic
ATAGTACAGAAACAAAACAA+GGG 0.699034 1_1:+58081222 None:intergenic
TCTGCTCCTGTATACACTCG+AGG 0.699341 1_1:+58078209 None:intergenic
TGTGATTATACCATTGACTG+TGG 0.747584 1_1:+58082426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_1:58083508-58083527 Msa0031350:five_prime_UTR 0.0%
!!! TTTTATGATTGTTATAATTA+CGG - chr1_1:58078586-58078605 Msa0031350:three_prime_UTR 10.0%
!!! ATTGTTTTTTGTTTAATTTA+TGG - chr1_1:58079256-58079275 Msa0031350:three_prime_UTR 10.0%
!!! GTTCAATTTTAAAAATCAAT+TGG - chr1_1:58078368-58078387 Msa0031350:three_prime_UTR 15.0%
!! TTTATGATTGTTATAATTAC+GGG - chr1_1:58078587-58078606 Msa0031350:three_prime_UTR 15.0%
!! ATGTAAAATTCAAAATTTCT+AGG + chr1_1:58078732-58078751 None:intergenic 15.0%
!!! TCTCTATTTTTCAAAATAAA+GGG + chr1_1:58079438-58079457 None:intergenic 15.0%
!!! TTCTCTATTTTTCAAAATAA+AGG + chr1_1:58079439-58079458 None:intergenic 15.0%
!! ATTTAAATGAATTGTAACAA+AGG + chr1_1:58079772-58079791 None:intergenic 15.0%
!!! TTTATAACTTTGTTTTCAAT+GGG - chr1_1:58080104-58080123 Msa0031350:CDS 15.0%
!!! TATACTTCATAACTTTTTAA+TGG - chr1_1:58081742-58081761 Msa0031350:five_prime_UTR 15.0%
!!! ATACTTCATAACTTTTTAAT+GGG - chr1_1:58081743-58081762 Msa0031350:five_prime_UTR 15.0%
!! TGTTTCAATTGATAAATATT+TGG - chr1_1:58082033-58082052 Msa0031350:five_prime_UTR 15.0%
!! TTTGTTTCATTTATTAATTG+TGG - chr1_1:58082522-58082541 Msa0031350:five_prime_UTR 15.0%
!! TGTTGTTGATCTTATATAAA+AGG - chr1_1:58078195-58078214 Msa0031350:three_prime_UTR 20.0%
!! GTTGTTGATCTTATATAAAA+GGG - chr1_1:58078196-58078215 Msa0031350:three_prime_UTR 20.0%
!! TTAATGTAACAATTTACTCT+CGG + chr1_1:58078691-58078710 None:intergenic 20.0%
!!! AAATTCAAAATTTCTAGGAA+AGG + chr1_1:58078727-58078746 None:intergenic 20.0%
!!! GAATACATATACCTTTAAAA+TGG + chr1_1:58079017-58079036 None:intergenic 20.0%
!!! AGTTTAAAATCACAATTGAA+TGG - chr1_1:58079168-58079187 Msa0031350:three_prime_UTR 20.0%
!! TGGTGTTCAATTTATAATTA+AGG + chr1_1:58079907-58079926 None:intergenic 20.0%
!!! GTTTATAACTTTGTTTTCAA+TGG - chr1_1:58080103-58080122 Msa0031350:CDS 20.0%
!!! TTTTGTTTCTGTACTATTTT+TGG - chr1_1:58080143-58080162 Msa0031350:CDS 20.0%
!! TTAACAGCATAGATTTATTA+AGG + chr1_1:58080207-58080226 None:intergenic 20.0%
!!! TGCTGTTAAAAAAAAAGTTT+TGG - chr1_1:58080218-58080237 Msa0031350:intron 20.0%
!!! GCTGTTAAAAAAAAAGTTTT+GGG - chr1_1:58080219-58080238 Msa0031350:intron 20.0%
!!! CAGATTTTATCCATTTTTTA+AGG - chr1_1:58081022-58081041 Msa0031350:five_prime_UTR 20.0%
!! AATAATGGTACCTTAAAAAA+TGG + chr1_1:58081035-58081054 None:intergenic 20.0%
!!! GGTACCATTATTTTTTTTTA+AGG - chr1_1:58081043-58081062 Msa0031350:five_prime_UTR 20.0%
!! GATGCCTTAAAAAAAAATAA+TGG + chr1_1:58081050-58081069 None:intergenic 20.0%
!! ATGATTTAGTTAGTTGTATA+GGG + chr1_1:58081118-58081137 None:intergenic 20.0%
!! ACTAAATCATCTATGAAATA+AGG - chr1_1:58081128-58081147 Msa0031350:five_prime_UTR 20.0%
!!! CATGAGATAATGTATTTTAT+TGG - chr1_1:58081937-58081956 Msa0031350:five_prime_UTR 20.0%
!! TTGAAACTAAATGCATTTAT+AGG - chr1_1:58082132-58082151 Msa0031350:five_prime_UTR 20.0%
!! AATATTATTGAATGCTTTGA+TGG - chr1_1:58082242-58082261 Msa0031350:five_prime_UTR 20.0%
!!! TTTTATGTGTTGTTTTGTTA+GGG + chr1_1:58082361-58082380 None:intergenic 20.0%
!!! TTTTTATGTGTTGTTTTGTT+AGG + chr1_1:58082362-58082381 None:intergenic 20.0%
!!! ATTTCTAGGAAATAAAATGA+AGG + chr1_1:58082551-58082570 None:intergenic 20.0%
!! AATATACATTGTGTATTTCT+AGG + chr1_1:58082565-58082584 None:intergenic 20.0%
!! TATGGTATAATTATTGTGTT+AGG - chr1_1:58083560-58083579 Msa0031350:five_prime_UTR 20.0%
!! GATACTGAATTTCTTTTGTT+TGG - chr1_1:58077790-58077809 Msa0031350:three_prime_UTR 25.0%
! AAAAAGAAAAGGGAAAAAGA+GGG + chr1_1:58077928-58077947 None:intergenic 25.0%
! TGAGATTATCCTTTGTAAAT+TGG - chr1_1:58078304-58078323 Msa0031350:three_prime_UTR 25.0%
! GAGATTATCCTTTGTAAATT+GGG - chr1_1:58078305-58078324 Msa0031350:three_prime_UTR 25.0%
!! AATCAATTGGATTAGAATGT+TGG - chr1_1:58078381-58078400 Msa0031350:three_prime_UTR 25.0%
! TACATCAAAACATTAGAACA+AGG + chr1_1:58078505-58078524 None:intergenic 25.0%
!! TTTTACATTACACAGTTTTG+TGG - chr1_1:58078744-58078763 Msa0031350:intron 25.0%
!! AAATGAGCTTCAAGTATTTT+AGG + chr1_1:58079102-58079121 None:intergenic 25.0%
! CTAAGTGTACATATTCATTA+AGG + chr1_1:58079327-58079346 None:intergenic 25.0%
! TTGAAAAATAGAGAAAACAC+TGG - chr1_1:58079444-58079463 Msa0031350:exon 25.0%
!! ACTGGATGATGAATTAATTT+TGG - chr1_1:58079462-58079481 Msa0031350:CDS 25.0%
! TATAAAAACTTAACAGAACC+TGG - chr1_1:58079660-58079679 Msa0031350:CDS 25.0%
! AAGATCTAAACAAAACACAA+TGG + chr1_1:58079927-58079946 None:intergenic 25.0%
! CTAACAACATGAAGAAAAAA+AGG + chr1_1:58079950-58079969 None:intergenic 25.0%
! ATAGTACAGAAACAAAACAA+GGG + chr1_1:58080140-58080159 None:intergenic 25.0%
! AATAGTACAGAAACAAAACA+AGG + chr1_1:58080141-58080160 None:intergenic 25.0%
! GATGAACGAATTGAAATAAT+AGG - chr1_1:58080453-58080472 Msa0031350:CDS 25.0%
! AATTGAAATAATAGGTGAAG+TGG - chr1_1:58080461-58080480 Msa0031350:CDS 25.0%
! AAATCATGCTAAAAAAGAGA+TGG - chr1_1:58080539-58080558 Msa0031350:CDS 25.0%
! TTTGATTCAAATACAATGCA+TGG + chr1_1:58080611-58080630 None:intergenic 25.0%
!! ATCTTTCTTCTTTTATCGTT+CGG - chr1_1:58080884-58080903 Msa0031350:CDS 25.0%
! TATTGTTTAGTATTTGTGGT+GGG + chr1_1:58081001-58081020 None:intergenic 25.0%
! TTGTATAGGGATATACTTAA+AGG + chr1_1:58081105-58081124 None:intergenic 25.0%
! GATGATTTAGTTAGTTGTAT+AGG + chr1_1:58081119-58081138 None:intergenic 25.0%
! AAAGATGCTTTAACTAAAGA+AGG - chr1_1:58081333-58081352 Msa0031350:five_prime_UTR 25.0%
! AACCTTCAGGAATTATTAAA+GGG + chr1_1:58081359-58081378 None:intergenic 25.0%
! TAACCTTCAGGAATTATTAA+AGG + chr1_1:58081360-58081379 None:intergenic 25.0%
!!! TTTGTAGGAAAGTTTTATCT+CGG - chr1_1:58081473-58081492 Msa0031350:five_prime_UTR 25.0%
! ATTACTTCAAGTGAATAATG+CGG + chr1_1:58081698-58081717 None:intergenic 25.0%
! AATTAATGTGATATGCATTG+TGG - chr1_1:58082096-58082115 Msa0031350:five_prime_UTR 25.0%
!! TGCATTTATAGGTTGAAAAA+TGG - chr1_1:58082143-58082162 Msa0031350:five_prime_UTR 25.0%
!!! AAAACTTTGAAAGATCGTTT+TGG - chr1_1:58082390-58082409 Msa0031350:five_prime_UTR 25.0%
!! TCTTTTGTGTATATGTAATG+AGG - chr1_1:58083372-58083391 Msa0031350:five_prime_UTR 25.0%
! ATGTTACAAGGCATAATTAA+AGG + chr1_1:58083410-58083429 None:intergenic 25.0%
! TTTAATTATGCCTTGTAACA+TGG - chr1_1:58083409-58083428 Msa0031350:five_prime_UTR 25.0%
!! AGAAGAAAGAGATTTTGAGT+GGG + chr1_1:58077857-58077876 None:intergenic 30.0%
CAAAAAGAAAAGGGAAAAAG+AGG + chr1_1:58077929-58077948 None:intergenic 30.0%
! CTCTTTTTCCCTTTTCTTTT+TGG - chr1_1:58077927-58077946 Msa0031350:three_prime_UTR 30.0%
AGCGAAAACCAAAAAGAAAA+GGG + chr1_1:58077938-58077957 None:intergenic 30.0%
AATGACCCAAAGGAATAAAA+AGG + chr1_1:58077990-58078009 None:intergenic 30.0%
ATCTGGAAACTACAAATCAT+AGG - chr1_1:58078103-58078122 Msa0031350:three_prime_UTR 30.0%
GAAACTACAAATCATAGGTA+TGG - chr1_1:58078108-58078127 Msa0031350:three_prime_UTR 30.0%
CATTTCAACCCAATTTACAA+AGG + chr1_1:58078316-58078335 None:intergenic 30.0%
! AATTGGATTAGAATGTTGGA+GGG - chr1_1:58078385-58078404 Msa0031350:three_prime_UTR 30.0%
!!! TTTTTGAGTCATTCGAATCT+AGG + chr1_1:58078434-58078453 None:intergenic 30.0%
AACTGTCAACGTATACTTTA+GGG + chr1_1:58078474-58078493 None:intergenic 30.0%
AAACTGTCAACGTATACTTT+AGG + chr1_1:58078475-58078494 None:intergenic 30.0%
! TGATTTCTTTTTCTTGAGCT+TGG - chr1_1:58078638-58078657 Msa0031350:three_prime_UTR 30.0%
! TACTTGTTAAATCGTTAGCT+TGG - chr1_1:58078892-58078911 Msa0031350:three_prime_UTR 30.0%
!! TGATGATGCTTCCATTTTAA+AGG - chr1_1:58079003-58079022 Msa0031350:three_prime_UTR 30.0%
!! AAGTATTTTAGGCTGAAGTA+TGG + chr1_1:58079091-58079110 None:intergenic 30.0%
TGCTTCAGATATTGACAAAA+TGG + chr1_1:58079144-58079163 None:intergenic 30.0%
AAAATCACAATTGAATGGCA+AGG - chr1_1:58079173-58079192 Msa0031350:three_prime_UTR 30.0%
AGAACAAGTTACATGCATAT+TGG + chr1_1:58079404-58079423 None:intergenic 30.0%
CAATAACGAAAGTTAAAACC+AGG + chr1_1:58079681-58079700 None:intergenic 30.0%
! GTATCAAAATTTTGAGCCAA+AGG - chr1_1:58079793-58079812 Msa0031350:CDS 30.0%
! TTATGTTTGTTACAGGACTA+TGG + chr1_1:58079835-58079854 None:intergenic 30.0%
!! TGTTGCTTTATGTTTGTTAC+AGG + chr1_1:58079842-58079861 None:intergenic 30.0%
TTTGGTTGTTATATGGTGTT+TGG - chr1_1:58080039-58080058 Msa0031350:CDS 30.0%
CTATGTATCTGTCATTCATA+CGG - chr1_1:58080070-58080089 Msa0031350:CDS 30.0%
AGACATGATCAAATAGCAAA+AGG + chr1_1:58080171-58080190 None:intergenic 30.0%
CCAATACAGAGTAGATAAAA+AGG + chr1_1:58080326-58080345 None:intergenic 30.0%
! CCTTTTTATCTACTCTGTAT+TGG - chr1_1:58080323-58080342 Msa0031350:intron 30.0%
GAAGATGAAATGATTGATGT+TGG - chr1_1:58080492-58080511 Msa0031350:CDS 30.0%
ATGCTAAAAAAGAGATGGAA+AGG - chr1_1:58080544-58080563 Msa0031350:CDS 30.0%
GCAAAATTCTTGCATATTGT+AGG - chr1_1:58080837-58080856 Msa0031350:CDS 30.0%
! TCTTTCTTCTTTTATCGTTC+GGG - chr1_1:58080885-58080904 Msa0031350:CDS 30.0%
CTATTGTTTAGTATTTGTGG+TGG + chr1_1:58081002-58081021 None:intergenic 30.0%
CTGCTATTGTTTAGTATTTG+TGG + chr1_1:58081005-58081024 None:intergenic 30.0%
CTATGAAATAAGGATTGCAT+TGG - chr1_1:58081138-58081157 Msa0031350:five_prime_UTR 30.0%
TAATAATTCCTGAAGGTTAG+TGG - chr1_1:58081361-58081380 Msa0031350:five_prime_UTR 30.0%
!! TTGTAGGAAAGTTTTATCTC+GGG - chr1_1:58081474-58081493 Msa0031350:five_prime_UTR 30.0%
AGATTTCCAATTATAGCTAG+TGG - chr1_1:58081665-58081684 Msa0031350:five_prime_UTR 30.0%
! TCATAACTTTTTAATGGGAG+TGG - chr1_1:58081748-58081767 Msa0031350:five_prime_UTR 30.0%
AAGCTATTACAACTGAAATG+TGG - chr1_1:58081885-58081904 Msa0031350:five_prime_UTR 30.0%
! TATAGGTTGAAAAATGGCAA+AGG - chr1_1:58082149-58082168 Msa0031350:five_prime_UTR 30.0%
TGAAAAATGGCAAAGGATAA+AGG - chr1_1:58082156-58082175 Msa0031350:five_prime_UTR 30.0%
!! ATCATAATGCTTAACTTGCA+TGG + chr1_1:58082656-58082675 None:intergenic 30.0%
TAAGCATTATGATGTTCTGA+AGG - chr1_1:58082663-58082682 Msa0031350:five_prime_UTR 30.0%
!!! ATGTTCTGAAGGTTCTTTTT+GGG - chr1_1:58082674-58082693 Msa0031350:five_prime_UTR 30.0%
TAAAATGAGACACAATCAGT+TGG - chr1_1:58082732-58082751 Msa0031350:five_prime_UTR 30.0%
TTGCAATGATAGCAAAAAGA+AGG - chr1_1:58083239-58083258 Msa0031350:five_prime_UTR 30.0%
!! AAAAAGAAGGAGCTGATTTT+TGG - chr1_1:58083252-58083271 Msa0031350:five_prime_UTR 30.0%
TTTCTACCATTGATGTTGTT+TGG - chr1_1:58083326-58083345 Msa0031350:five_prime_UTR 30.0%
AAGATACCAAACAACATCAA+TGG + chr1_1:58083335-58083354 None:intergenic 30.0%
AAAATACTTGCCATGTTACA+AGG + chr1_1:58083422-58083441 None:intergenic 30.0%
!!! AGTATTTTGAAACATGCAGT+AGG - chr1_1:58083434-58083453 Msa0031350:five_prime_UTR 30.0%
!!! GTATTTTGAAACATGCAGTA+GGG - chr1_1:58083435-58083454 Msa0031350:five_prime_UTR 30.0%
!! GAAGAAAGAGATTTTGAGTG+GGG + chr1_1:58077856-58077875 None:intergenic 35.0%
! GAGAAGAAAGAGATTTTGAG+TGG + chr1_1:58077858-58077877 None:intergenic 35.0%
GAAAAAGGAGAGAAATACAC+TGG - chr1_1:58077889-58077908 Msa0031350:three_prime_UTR 35.0%
CAGCGAAAACCAAAAAGAAA+AGG + chr1_1:58077939-58077958 None:intergenic 35.0%
! TCCCACCTTTTTATTCCTTT+GGG - chr1_1:58077982-58078001 Msa0031350:three_prime_UTR 35.0%
ACCCAAAGGAATAAAAAGGT+GGG + chr1_1:58077986-58078005 None:intergenic 35.0%
! CAATTGGATTAGAATGTTGG+AGG - chr1_1:58078384-58078403 Msa0031350:three_prime_UTR 35.0%
ACTGTCAACGTATACTTTAG+GGG + chr1_1:58078473-58078492 None:intergenic 35.0%
GTAGATGTGACTTGAACTTT+AGG - chr1_1:58078522-58078541 Msa0031350:three_prime_UTR 35.0%
! TTCTAGGAAAGGCTAAAATG+AGG + chr1_1:58078716-58078735 None:intergenic 35.0%
ACCATACTGAACTGAATCTT+CGG + chr1_1:58078786-58078805 None:intergenic 35.0%
! TGTGATTATACCATTGACTG+TGG + chr1_1:58078936-58078955 None:intergenic 35.0%
ATGGAATTTGCATCCATAGA+TGG + chr1_1:58078980-58078999 None:intergenic 35.0%
!! AATGGAAGCATCATCATCAA+TGG + chr1_1:58078999-58079018 None:intergenic 35.0%
! ATGTTGCCTTTGCTTTATTG+AGG - chr1_1:58079043-58079062 Msa0031350:three_prime_UTR 35.0%
AAACTGCCTCAATAAAGCAA+AGG + chr1_1:58079052-58079071 None:intergenic 35.0%
!! ATGCATGTAACTTGTTCTCA+AGG - chr1_1:58079406-58079425 Msa0031350:three_prime_UTR 35.0%
!!! CTTTTTTATTCTCTGCACGA+AGG - chr1_1:58079496-58079515 Msa0031350:CDS 35.0%
AAATCCACAGTTTGATCCTT+TGG - chr1_1:58079567-58079586 Msa0031350:CDS 35.0%
CAAGTTCATGACATAACTCA+AGG + chr1_1:58079709-58079728 None:intergenic 35.0%
CTTGAGTTATGTCATGAACT+TGG - chr1_1:58079707-58079726 Msa0031350:CDS 35.0%
TATGCAAATAAGGCAACCTT+TGG + chr1_1:58079812-58079831 None:intergenic 35.0%
AGGACTATGGTATGCAAATA+AGG + chr1_1:58079822-58079841 None:intergenic 35.0%
CTATATCAGTGGCATATGTT+AGG + chr1_1:58079869-58079888 None:intergenic 35.0%
TATAGTCCAAGCTATATCAG+TGG + chr1_1:58079880-58079899 None:intergenic 35.0%
!! TTCATGTTGTTAGCCTCTTT+TGG - chr1_1:58079957-58079976 Msa0031350:intron 35.0%
!!! CTCTTTTGGCATCTAGTTTT+GGG - chr1_1:58079971-58079990 Msa0031350:intron 35.0%
TTCTAGATAGTTTCAGCCTA+AGG - chr1_1:58079996-58080015 Msa0031350:intron 35.0%
TCTAGATAGTTTCAGCCTAA+GGG - chr1_1:58079997-58080016 Msa0031350:intron 35.0%
!!! AGCAGGTTTTGGTTGTTATA+TGG - chr1_1:58080032-58080051 Msa0031350:CDS 35.0%
TACAGAAACAAAACAAGGGA+GGG + chr1_1:58080136-58080155 None:intergenic 35.0%
TTGCTCATTTGTACTACATG+TGG - chr1_1:58080359-58080378 Msa0031350:CDS 35.0%
TGCTCATTTGTACTACATGT+GGG - chr1_1:58080360-58080379 Msa0031350:CDS 35.0%
CAACAATATGACACTCTCAA+AGG + chr1_1:58080389-58080408 None:intergenic 35.0%
!! TTGAGAGTGTCATATTGTTG+TGG - chr1_1:58080389-58080408 Msa0031350:CDS 35.0%
! AATAATAGGTGAAGTGGACT+TGG - chr1_1:58080467-58080486 Msa0031350:CDS 35.0%
CTAAAAAAGAGATGGAAAGG+AGG - chr1_1:58080547-58080566 Msa0031350:CDS 35.0%
ATGGAAAGGAGGAAACATAT+TGG - chr1_1:58080558-58080577 Msa0031350:CDS 35.0%
! GTGTCTAAAACTAAGAGGTA+CGG - chr1_1:58080770-58080789 Msa0031350:CDS 35.0%
! TGTCTAAAACTAAGAGGTAC+GGG - chr1_1:58080771-58080790 Msa0031350:CDS 35.0%
GAATTTATAGTCCAACCATC+AGG - chr1_1:58080966-58080985 Msa0031350:five_prime_UTR 35.0%
! TAGTATTTGTGGTGGGATAT+CGG + chr1_1:58080994-58081013 None:intergenic 35.0%
!! CAGCTAATACATTTTGAGTG+GGG + chr1_1:58081239-58081258 None:intergenic 35.0%
!! GCAGCTAATACATTTTGAGT+GGG + chr1_1:58081240-58081259 None:intergenic 35.0%
! TGCAGCTAATACATTTTGAG+TGG + chr1_1:58081241-58081260 None:intergenic 35.0%
AAATTCACTTACGTGTTAGC+CGG - chr1_1:58081276-58081295 Msa0031350:five_prime_UTR 35.0%
! TAACTTTTCCACTAACCTTC+AGG + chr1_1:58081372-58081391 None:intergenic 35.0%
!! TGTAGGAAAGTTTTATCTCG+GGG - chr1_1:58081475-58081494 Msa0031350:five_prime_UTR 35.0%
CGGGATTTATGCTTAAACAA+GGG - chr1_1:58081501-58081520 Msa0031350:five_prime_UTR 35.0%
! TGATAACGAACTCCTCTATA+TGG + chr1_1:58081536-58081555 None:intergenic 35.0%
! AACGTCATTGAGAGAACTTT+TGG - chr1_1:58081629-58081648 Msa0031350:five_prime_UTR 35.0%
TTCATCATGCTGTTGTGTTT+GGG + chr1_1:58081837-58081856 None:intergenic 35.0%
AACTACATTAAGCTCCATAC+AGG + chr1_1:58081913-58081932 None:intergenic 35.0%
ATTGAATGCTTTGATGGAAG+AGG - chr1_1:58082248-58082267 Msa0031350:five_prime_UTR 35.0%
!! TGAATGTCGTAGCTGTTTTA+CGG - chr1_1:58082319-58082338 Msa0031350:five_prime_UTR 35.0%
GGTGAAGCATATGATCTATT+TGG - chr1_1:58082411-58082430 Msa0031350:five_prime_UTR 35.0%
GAAGCATATGATCTATTTGG+TGG - chr1_1:58082414-58082433 Msa0031350:five_prime_UTR 35.0%
TTGGATGGAATTCAACAACT+AGG - chr1_1:58082448-58082467 Msa0031350:five_prime_UTR 35.0%
TTCAACAACTAGGAGGTTTA+CGG - chr1_1:58082458-58082477 Msa0031350:five_prime_UTR 35.0%
CTTATAAGTTCTTCCCAAAC+TGG + chr1_1:58082492-58082511 None:intergenic 35.0%
! CATAGTGTGTGTTTGATGAT+AGG - chr1_1:58082603-58082622 Msa0031350:five_prime_UTR 35.0%
!!! GATGTTCTGAAGGTTCTTTT+TGG - chr1_1:58082673-58082692 Msa0031350:five_prime_UTR 35.0%
!!! TGTTCTGAAGGTTCTTTTTG+GGG - chr1_1:58082675-58082694 Msa0031350:five_prime_UTR 35.0%
TCATGTAAGTATCATCAGCT+GGG + chr1_1:58082813-58082832 None:intergenic 35.0%
! GTGCTGATATACTTGATGAA+GGG - chr1_1:58082842-58082861 Msa0031350:five_prime_UTR 35.0%
ACTCATACAGTCCAACATAT+GGG - chr1_1:58082884-58082903 Msa0031350:five_prime_UTR 35.0%
TGATGTGATTTCCCATATGT+TGG + chr1_1:58082898-58082917 None:intergenic 35.0%
! TCCAATGAATGATTTTGTGG+AGG - chr1_1:58082960-58082979 Msa0031350:five_prime_UTR 35.0%
TTCTGATCAATTGCATGATG+TGG - chr1_1:58083050-58083069 Msa0031350:five_prime_UTR 35.0%
ATGGAATATGCTTGATGAGT+TGG - chr1_1:58083176-58083195 Msa0031350:five_prime_UTR 35.0%
TAGCACTTGAAACGAAATTG+TGG + chr1_1:58083210-58083229 None:intergenic 35.0%
ACAGGTTCTCTTACAAATGA+TGG - chr1_1:58083296-58083315 Msa0031350:five_prime_UTR 35.0%
ATATGTAATGAGGACACATC+TGG - chr1_1:58083382-58083401 Msa0031350:five_prime_UTR 35.0%
ACATGCAGTAGGGAAAAAAA+AGG - chr1_1:58083445-58083464 Msa0031350:five_prime_UTR 35.0%
!! CAATATGTAGTTGCCACTTT+AGG - chr1_1:58083468-58083487 Msa0031350:five_prime_UTR 35.0%
TTATTGTGTTAGGCCAACTA+TGG - chr1_1:58083570-58083589 Msa0031350:five_prime_UTR 35.0%
ACCATAAGAAATGCCATAGT+TGG + chr1_1:58083586-58083605 None:intergenic 35.0%
TCTCTCAACAGCGAAGAAAA+AGG - chr1_1:58077874-58077893 Msa0031350:intron 40.0%
CAAAGGAATAAAAAGGTGGG+AGG + chr1_1:58077983-58078002 None:intergenic 40.0%
! CTCCCACCTTTTTATTCCTT+TGG - chr1_1:58077981-58078000 Msa0031350:three_prime_UTR 40.0%
GACCCAAAGGAATAAAAAGG+TGG + chr1_1:58077987-58078006 None:intergenic 40.0%
TGAGGAAGATAATGACCCAA+AGG + chr1_1:58078000-58078019 None:intergenic 40.0%
GATAGATCAAGAGAAGTTGC+AGG + chr1_1:58078048-58078067 None:intergenic 40.0%
! GGTGTTGTAGAGATCTAAGA+AGG + chr1_1:58078070-58078089 None:intergenic 40.0%
!! TTCCAGATCTAGTCTTGATG+TGG + chr1_1:58078091-58078110 None:intergenic 40.0%
ATGTTGGAGGGATTTCTTTG+TGG - chr1_1:58078397-58078416 Msa0031350:three_prime_UTR 40.0%
TCCGAAGATTCAGTTCAGTA+TGG - chr1_1:58078782-58078801 Msa0031350:intron 40.0%
CTGAATTGTACCACAGTCAA+TGG - chr1_1:58078923-58078942 Msa0031350:three_prime_UTR 40.0%
!!! GTTACTTTTGCTGCCATCTA+TGG - chr1_1:58078964-58078983 Msa0031350:three_prime_UTR 40.0%
GGATGCTCAGGAAATATATG+TGG - chr1_1:58079194-58079213 Msa0031350:three_prime_UTR 40.0%
! TTTGATCCTTTGGAGGGAAA+TGG - chr1_1:58079577-58079596 Msa0031350:CDS 40.0%
CACGAGAGAGACACTATATT+GGG - chr1_1:58079621-58079640 Msa0031350:CDS 40.0%
CATATGCCACTGATATAGCT+TGG - chr1_1:58079871-58079890 Msa0031350:CDS 40.0%
CCAAAACTAGATGCCAAAAG+AGG + chr1_1:58079973-58079992 None:intergenic 40.0%
!! CCTCTTTTGGCATCTAGTTT+TGG - chr1_1:58079970-58079989 Msa0031350:intron 40.0%
CTAGATAGTTTCAGCCTAAG+GGG - chr1_1:58079998-58080017 Msa0031350:intron 40.0%
ACAGAAACAAAACAAGGGAG+GGG + chr1_1:58080135-58080154 None:intergenic 40.0%
GTACAGAAACAAAACAAGGG+AGG + chr1_1:58080137-58080156 None:intergenic 40.0%
GATCATGTCTTGTGTTCATG+AGG - chr1_1:58080181-58080200 Msa0031350:CDS 40.0%
! AGAGTGTCATATTGTTGTGG+AGG - chr1_1:58080392-58080411 Msa0031350:CDS 40.0%
TAGTGCACACAGATAAGTGT+CGG - chr1_1:58080709-58080728 Msa0031350:CDS 40.0%
! CAGCTGTGTCTAAAACTAAG+AGG - chr1_1:58080765-58080784 Msa0031350:CDS 40.0%
! AAGAGGTACGGGTATAGTAA+AGG - chr1_1:58080782-58080801 Msa0031350:CDS 40.0%
TTGCATGCCATACTTGCATT+AGG - chr1_1:58080939-58080958 Msa0031350:CDS 40.0%
TGCATGCCATACTTGCATTA+GGG - chr1_1:58080940-58080959 Msa0031350:CDS 40.0%
TTCTTCCCCTAATGCAAGTA+TGG + chr1_1:58080949-58080968 None:intergenic 40.0%
GATTGCATTGGAGCTATAGA+TGG - chr1_1:58081150-58081169 Msa0031350:five_prime_UTR 40.0%
! TTTTCTTCCACGAAAACGAG+GGG + chr1_1:58081211-58081230 None:intergenic 40.0%
! CTTTTCTTCCACGAAAACGA+GGG + chr1_1:58081212-58081231 None:intergenic 40.0%
! TCTTTTCTTCCACGAAAACG+AGG + chr1_1:58081213-58081232 None:intergenic 40.0%
AATTCACTTACGTGTTAGCC+GGG - chr1_1:58081277-58081296 Msa0031350:five_prime_UTR 40.0%
GGCCCTTTAATAATTCCTGA+AGG - chr1_1:58081354-58081373 Msa0031350:five_prime_UTR 40.0%
!! AAAGTTTTATCTCGGGGATG+CGG - chr1_1:58081481-58081500 Msa0031350:five_prime_UTR 40.0%
GCGGGATTTATGCTTAAACA+AGG - chr1_1:58081500-58081519 Msa0031350:five_prime_UTR 40.0%
GGGTTACTAACTCCATATAG+AGG - chr1_1:58081521-58081540 Msa0031350:five_prime_UTR 40.0%
!! TTGAAAGAGTATTCCTCTCG+TGG - chr1_1:58081557-58081576 Msa0031350:five_prime_UTR 40.0%
!! TGAAAGAGTATTCCTCTCGT+GGG - chr1_1:58081558-58081577 Msa0031350:five_prime_UTR 40.0%
! AATAACTCTCGGGGATTTTG+TGG + chr1_1:58081584-58081603 None:intergenic 40.0%
TCGAAGGTTGAATAACTCTC+GGG + chr1_1:58081594-58081613 None:intergenic 40.0%
GTCGAAGGTTGAATAACTCT+CGG + chr1_1:58081595-58081614 None:intergenic 40.0%
! TCAGTGCCACTAGCTATAAT+TGG + chr1_1:58081674-58081693 None:intergenic 40.0%
! TCATGAAGCACTAATTGCTG+AGG - chr1_1:58081775-58081794 Msa0031350:five_prime_UTR 40.0%
CTTCATCATGCTGTTGTGTT+TGG + chr1_1:58081838-58081857 None:intergenic 40.0%
ACTGAAATGTGGAACCTGTA+TGG - chr1_1:58081896-58081915 Msa0031350:five_prime_UTR 40.0%
AGAACCTAGACAAGCTACTA+AGG - chr1_1:58082188-58082207 Msa0031350:five_prime_UTR 40.0%
AAGCTACTAAGGACGTCTTA+AGG - chr1_1:58082199-58082218 Msa0031350:five_prime_UTR 40.0%
!! CTTAAGGTGGACTGATGATA+TGG - chr1_1:58082215-58082234 Msa0031350:five_prime_UTR 40.0%
!!! ATGTGTTGTTTTGTTAGGGC+TGG + chr1_1:58082357-58082376 None:intergenic 40.0%
GATGGAATTCAACAACTAGG+AGG - chr1_1:58082451-58082470 Msa0031350:five_prime_UTR 40.0%
TAAAACCACATGCTGCTAAG+TGG - chr1_1:58082626-58082645 Msa0031350:five_prime_UTR 40.0%
ACAATCAGTTGGAGAAGGAA+AGG - chr1_1:58082743-58082762 Msa0031350:five_prime_UTR 40.0%
GTCATGTAAGTATCATCAGC+TGG + chr1_1:58082814-58082833 None:intergenic 40.0%
! CGTGCTGATATACTTGATGA+AGG - chr1_1:58082841-58082860 Msa0031350:five_prime_UTR 40.0%
GGACTGTATGAGTCAACAAT+GGG + chr1_1:58082877-58082896 None:intergenic 40.0%
TGGACTGTATGAGTCAACAA+TGG + chr1_1:58082878-58082897 None:intergenic 40.0%
GACTCATACAGTCCAACATA+TGG - chr1_1:58082883-58082902 Msa0031350:five_prime_UTR 40.0%
GGGAAATCACATCAATCCAT+AGG - chr1_1:58082904-58082923 Msa0031350:five_prime_UTR 40.0%
CATCAATCCATAGGAACATC+TGG - chr1_1:58082913-58082932 Msa0031350:five_prime_UTR 40.0%
! GGCTCCAATGAATGATTTTG+TGG - chr1_1:58082957-58082976 Msa0031350:five_prime_UTR 40.0%
GCCTCCACAAAATCATTCAT+TGG + chr1_1:58082964-58082983 None:intergenic 40.0%
! TGATTTTGTGGAGGCTCAAT+TGG - chr1_1:58082969-58082988 Msa0031350:five_prime_UTR 40.0%
! ATGGTTGATGCGTTGAACAA+AGG - chr1_1:58083018-58083037 Msa0031350:five_prime_UTR 40.0%
TGTATACAGGAGCAGATGTA+TGG - chr1_1:58083157-58083176 Msa0031350:five_prime_UTR 40.0%
CTACTGTCAATTGCCTAAAG+TGG + chr1_1:58083484-58083503 None:intergenic 40.0%
GCCAACTATGGCATTTCTTA+TGG - chr1_1:58083582-58083601 Msa0031350:five_prime_UTR 40.0%
GAATAAAAAGGTGGGAGGAG+AGG + chr1_1:58077978-58077997 None:intergenic 45.0%
! TCATCCTCCAAGTTTGGTGA+TGG - chr1_1:58078021-58078040 Msa0031350:three_prime_UTR 45.0%
CACCACATCAAGACTAGATC+TGG - chr1_1:58078086-58078105 Msa0031350:three_prime_UTR 45.0%
! TAAAAGGGCATGCAGTACCA+TGG - chr1_1:58078211-58078230 Msa0031350:three_prime_UTR 45.0%
TGACAAACACACCACATCCA+TGG + chr1_1:58078231-58078250 None:intergenic 45.0%
ATTGAATGGCAAGGATGCTC+AGG - chr1_1:58079182-58079201 Msa0031350:three_prime_UTR 45.0%
TCCACAGTTTGATCCTTTGG+AGG - chr1_1:58079570-58079589 Msa0031350:CDS 45.0%
CCACAGTTTGATCCTTTGGA+GGG - chr1_1:58079571-58079590 Msa0031350:CDS 45.0%
CCAATATAGTGTCTCTCTCG+TGG + chr1_1:58079623-58079642 None:intergenic 45.0%
CCACGAGAGAGACACTATAT+TGG - chr1_1:58079620-58079639 Msa0031350:CDS 45.0%
TTTCAGCCTAAGGGGTTTGA+AGG - chr1_1:58080006-58080025 Msa0031350:CDS 45.0%
TTCAGCCTAAGGGGTTTGAA+GGG - chr1_1:58080007-58080026 Msa0031350:CDS 45.0%
ATGCTCACTTTGTGGAGAGT+AGG + chr1_1:58080664-58080683 None:intergenic 45.0%
TGACGTCTATGCTCACTTTG+TGG + chr1_1:58080672-58080691 None:intergenic 45.0%
AGTGCACACAGATAAGTGTC+GGG - chr1_1:58080710-58080729 Msa0031350:CDS 45.0%
TGTCGGGACATCATACGAAT+GGG - chr1_1:58080726-58080745 Msa0031350:CDS 45.0%
GTCTACTGTAGAAGAGCAAG+TGG - chr1_1:58080815-58080834 Msa0031350:CDS 45.0%
GCATGCCATACTTGCATTAG+GGG - chr1_1:58080941-58080960 Msa0031350:CDS 45.0%
!! AAGTTTTATCTCGGGGATGC+GGG - chr1_1:58081482-58081501 Msa0031350:five_prime_UTR 45.0%
CGAAGGTTGAATAACTCTCG+GGG + chr1_1:58081593-58081612 None:intergenic 45.0%
ACCTTCGACACTCTTCACTT+CGG - chr1_1:58081606-58081625 Msa0031350:five_prime_UTR 45.0%
! CATGATGAAGACTACCGACT+AGG - chr1_1:58081848-58081867 Msa0031350:five_prime_UTR 45.0%
! ACGTCCTTAGTAGCTTGTCT+AGG + chr1_1:58082195-58082214 None:intergenic 45.0%
CTACTAAGGACGTCTTAAGG+TGG - chr1_1:58082202-58082221 Msa0031350:five_prime_UTR 45.0%
TTGATGGAAGAGGTCCACAA+AGG - chr1_1:58082258-58082277 Msa0031350:five_prime_UTR 45.0%
TGATGGAAGAGGTCCACAAA+GGG - chr1_1:58082259-58082278 Msa0031350:five_prime_UTR 45.0%
AAGAGGTCCACAAAGGGAAT+AGG - chr1_1:58082265-58082284 Msa0031350:five_prime_UTR 45.0%
CATCATGCCTATTCCCTTTG+TGG + chr1_1:58082275-58082294 None:intergenic 45.0%
CACAAAGGGAATAGGCATGA+TGG - chr1_1:58082273-58082292 Msa0031350:five_prime_UTR 45.0%
! GATCTATTTGGTGGCTTGAG+CGG - chr1_1:58082423-58082442 Msa0031350:five_prime_UTR 45.0%
! GTTTTCCACTTAGCAGCATG+TGG + chr1_1:58082634-58082653 None:intergenic 45.0%
! TAGATGTTTTTCCCGCTGCT+CGG + chr1_1:58082705-58082724 None:intergenic 45.0%
GAGACACAATCAGTTGGAGA+AGG - chr1_1:58082738-58082757 Msa0031350:five_prime_UTR 45.0%
CATCAAGTATATCAGCACGC+TGG + chr1_1:58082840-58082859 None:intergenic 45.0%
!! ATAGGAACATCTGGTTCTCG+CGG - chr1_1:58082922-58082941 Msa0031350:five_prime_UTR 45.0%
CAATTGGATCGAATGACGAG+TGG - chr1_1:58082985-58083004 Msa0031350:five_prime_UTR 45.0%
TGTAGACCTCGAGTGTATAC+AGG - chr1_1:58083144-58083163 Msa0031350:five_prime_UTR 45.0%
ACCTGTAAACGCATGTCAGT+GGG + chr1_1:58083282-58083301 None:intergenic 45.0%
AACCTGTAAACGCATGTCAG+TGG + chr1_1:58083283-58083302 None:intergenic 45.0%
!!! TATATTTTATAAAATTTTGT+AGG - chr1_1:58081458-58081477 Msa0031350:five_prime_UTR 5.0%
AAGAGAGAAGACTGCAGCGT+GGG - chr1_1:58077830-58077849 Msa0031350:intron 50.0%
AAAAGGTGGGAGGAGAGGAA+GGG + chr1_1:58077973-58077992 None:intergenic 50.0%
AAAAAGGTGGGAGGAGAGGA+AGG + chr1_1:58077974-58077993 None:intergenic 50.0%
CCAAACTTGGAGGATGAGTG+AGG + chr1_1:58078018-58078037 None:intergenic 50.0%
CCTCACTCATCCTCCAAGTT+TGG - chr1_1:58078015-58078034 Msa0031350:three_prime_UTR 50.0%
AGGTCCATCACCAAACTTGG+AGG + chr1_1:58078028-58078047 None:intergenic 50.0%
TGCAGGTCCATCACCAAACT+TGG + chr1_1:58078031-58078050 None:intergenic 50.0%
CCCTCCAAAGGATCAAACTG+TGG + chr1_1:58079574-58079593 None:intergenic 50.0%
GACGAACCATTTCCCTCCAA+AGG + chr1_1:58079586-58079605 None:intergenic 50.0%
TCAGCCTAAGGGGTTTGAAG+GGG - chr1_1:58080008-58080027 Msa0031350:CDS 50.0%
! TTTGAAGGGGGAGCAGGTTT+TGG - chr1_1:58080021-58080040 Msa0031350:CDS 50.0%
GTGTCGGGACATCATACGAA+TGG - chr1_1:58080725-58080744 Msa0031350:CDS 50.0%
GTCGGGACATCATACGAATG+GGG - chr1_1:58080727-58080746 Msa0031350:CDS 50.0%
CACAGCTGCATGAATGCTTC+AGG + chr1_1:58080753-58080772 None:intergenic 50.0%
TGGCACACACATTCGAGTGA+AGG - chr1_1:58081170-58081189 Msa0031350:five_prime_UTR 50.0%
ACATTCGAGTGAAGGTCCCA+AGG - chr1_1:58081178-58081197 Msa0031350:five_prime_UTR 50.0%
CATTCGAGTGAAGGTCCCAA+GGG - chr1_1:58081179-58081198 Msa0031350:five_prime_UTR 50.0%
AGATGTTGTTCCTTCCCACC+CGG + chr1_1:58081298-58081317 None:intergenic 50.0%
!! TCCGAAGTGAAGAGTGTCGA+AGG + chr1_1:58081610-58081629 None:intergenic 50.0%
ACCGACTAGGATCGCTTCTT+AGG - chr1_1:58081861-58081880 Msa0031350:five_prime_UTR 50.0%
CCCTAAGAAGCGATCCTAGT+CGG + chr1_1:58081865-58081884 None:intergenic 50.0%
CCGACTAGGATCGCTTCTTA+GGG - chr1_1:58081862-58081881 Msa0031350:five_prime_UTR 50.0%
! TTTGGTGGCTTGAGCGGATT+TGG - chr1_1:58082429-58082448 Msa0031350:five_prime_UTR 50.0%
AACTAGGAGGTTTACGGCTG+AGG - chr1_1:58082464-58082483 Msa0031350:five_prime_UTR 50.0%
TTACGGCTGAGGAACCAGTT+TGG - chr1_1:58082475-58082494 Msa0031350:five_prime_UTR 50.0%
TACGGCTGAGGAACCAGTTT+GGG - chr1_1:58082476-58082495 Msa0031350:five_prime_UTR 50.0%
GCGAGAACCAGATGTTCCTA+TGG + chr1_1:58082923-58082942 None:intergenic 50.0%
TTCTCGCGGAACAAAGCGTA+AGG - chr1_1:58082936-58082955 Msa0031350:five_prime_UTR 50.0%
GATCGAATGACGAGTGGCAT+TGG - chr1_1:58082991-58083010 Msa0031350:five_prime_UTR 50.0%
TCTGCTCCTGTATACACTCG+AGG + chr1_1:58083153-58083172 None:intergenic 50.0%
GAAGAGAGAAGACTGCAGCG+TGG - chr1_1:58077829-58077848 Msa0031350:intron 55.0%
GGCATGCAGTACCATGGATG+TGG - chr1_1:58078217-58078236 Msa0031350:three_prime_UTR 55.0%
CAGCCTAAGGGGTTTGAAGG+GGG - chr1_1:58080009-58080028 Msa0031350:CDS 55.0%
GGATATCGGCACCTGATGGT+TGG + chr1_1:58080980-58080999 None:intergenic 55.0%
TCACTTACGTGTTAGCCGGG+TGG - chr1_1:58081280-58081299 Msa0031350:five_prime_UTR 55.0%
CACTTACGTGTTAGCCGGGT+GGG - chr1_1:58081281-58081300 Msa0031350:five_prime_UTR 55.0%
! GTGGCTTGAGCGGATTTGGA+TGG - chr1_1:58082433-58082452 Msa0031350:five_prime_UTR 55.0%
!! TTTTGGGGAAGACCGAGCAG+CGG - chr1_1:58082690-58082709 Msa0031350:five_prime_UTR 55.0%
! GACGAGTGGCATTGGACTCA+TGG - chr1_1:58082999-58083018 Msa0031350:five_prime_UTR 55.0%
GCCCACTGACATGCGTTTAC+AGG - chr1_1:58083278-58083297 Msa0031350:five_prime_UTR 55.0%
GCTCCCCCTTCAAACCCCTT+AGG + chr1_1:58080015-58080034 None:intergenic 60.0%
AAGGGGTTTGAAGGGGGAGC+AGG - chr1_1:58080015-58080034 Msa0031350:CDS 60.0%
GGTGGGATATCGGCACCTGA+TGG + chr1_1:58080984-58081003 None:intergenic 60.0%
AACGAGGGGCTTCTGCCCTT+GGG + chr1_1:58081197-58081216 None:intergenic 60.0%
AAACGAGGGGCTTCTGCCCT+TGG + chr1_1:58081198-58081217 None:intergenic 60.0%
! GCAGAAGCCCCTCGTTTTCG+TGG - chr1_1:58081201-58081220 Msa0031350:five_prime_UTR 60.0%
TACGTGTTAGCCGGGTGGGA+AGG - chr1_1:58081285-58081304 Msa0031350:five_prime_UTR 60.0%
! GGGATTTTGTGGCCCACGAG+AGG + chr1_1:58081573-58081592 None:intergenic 60.0%
TTTGGGGAAGACCGAGCAGC+GGG - chr1_1:58082691-58082710 Msa0031350:five_prime_UTR 60.0%
AGGTGGGAGGAGAGGAAGGG+CGG + chr1_1:58077970-58077989 None:intergenic 65.0%
GGTGGGAGGAGAGGAAGGGC+GGG + chr1_1:58077969-58077988 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58077767 58083614 58077767 ID=Msa0031350;Name=Msa0031350
chr1_1 mRNA 58077767 58083614 58077767 ID=Msa0031350-mRNA-1;Parent=Msa0031350;Name=Msa0031350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=2650|1|1|1|0.75|0.4|5|1541|432
chr1_1 exon 58077767 58077838 58077767 ID=Msa0031350-mRNA-1:exon:17637;Parent=Msa0031350-mRNA-1
chr1_1 exon 58077875 58078756 58077875 ID=Msa0031350-mRNA-1:exon:17636;Parent=Msa0031350-mRNA-1
chr1_1 exon 58078869 58079901 58078869 ID=Msa0031350-mRNA-1:exon:17635;Parent=Msa0031350-mRNA-1
chr1_1 exon 58080006 58080231 58080006 ID=Msa0031350-mRNA-1:exon:17634;Parent=Msa0031350-mRNA-1
chr1_1 exon 58080338 58083614 58080338 ID=Msa0031350-mRNA-1:exon:17633;Parent=Msa0031350-mRNA-1
chr1_1 five_prime_UTR 58080965 58083614 58080965 ID=Msa0031350-mRNA-1:five_prime_utr;Parent=Msa0031350-mRNA-1
chr1_1 CDS 58080338 58080964 58080338 ID=Msa0031350-mRNA-1:cds;Parent=Msa0031350-mRNA-1
chr1_1 CDS 58080006 58080231 58080006 ID=Msa0031350-mRNA-1:cds;Parent=Msa0031350-mRNA-1
chr1_1 CDS 58079456 58079901 58079456 ID=Msa0031350-mRNA-1:cds;Parent=Msa0031350-mRNA-1
chr1_1 three_prime_UTR 58078869 58079455 58078869 ID=Msa0031350-mRNA-1:three_prime_utr;Parent=Msa0031350-mRNA-1
chr1_1 three_prime_UTR 58077875 58078756 58077875 ID=Msa0031350-mRNA-1:three_prime_utr;Parent=Msa0031350-mRNA-1
chr1_1 three_prime_UTR 58077767 58077838 58077767 ID=Msa0031350-mRNA-1:three_prime_utr;Parent=Msa0031350-mRNA-1
Gene Sequence

>Msa0031350

ATGTCAAATCTAGATAGTGTTGAAGACGTAAGCAATGATGAACGAATTGAAATAATAGGTGAAGTGGACTTGGATGAAGATGAAATGATTGATGTTGGAATGTCTATTCAAATGCTAGTTTTAAATCATGCTAAAAAAGAGATGGAAAGGAGGAAACATATTGGTTCTGTTGTCTTATTGTGTCATGATGTCCATGCATTGTATTTGAATCAAATCTTATCAACATGTATGCATAGTCGAGTCACCTACTCTCCACAAAGTGAGCATAGACGTCATGAGTTAATGAGTTATCTAGTGCACACAGATAAGTGTCGGGACATCATACGAATGGGGCCTGAAGCATTCATGCAGCTGTGTCTAAAACTAAGAGGTACGGGTATAGTAAAGGATACTATAAAGTCTACTGTAGAAGAGCAAGTGGCAAAATTCTTGCATATTGTAGGACATAATGTTAAAAATCGTACTGTATCTTTCTTCTTTTATCGTTCGGGAGAGACTGTTAGTTGTCACTTTCACACTGTGTTGCATGCCATACTTGCATTAGGGGAAGAATTTATAGTCCAACCATCAGGTGCCGATATCCCACCACAAATACTAAACAATAGCAGATTTTATCCATTTTTTAAGGATTGCATTGGAGCTATAGATGGCACACACATTCGAGTGAAGGTCCCAAGGGCAGAAGCCCCTCGTTTTCGTGGAAGAAAAGAGCACCCCACTCAAAATGTATTAGCTGCATGTAATTTCGACATGAAATTCACTTACGTGTTAGCCGGGTGGGAAGGAACAACATCTGACTCTAGAATATTAAAAGATGCTTTAACTAAAGAAGGCCCTTTAATAATTCCTGAAGGAAAGTTTTATCTCGGGGATGCGGGATTTATGCTTAAACAAGGGTTACTAACTCCATATAGAGGAGTTCGTTATCACTTGAAAGAGTATTCCTCTCGTGGGCCACAAAATCCCCGAGAGTTATTCAACCTTCGACACTCTTCACTTCGGAACGTCATTGAGAGAACTTTTGGTGTGTTAAAAAAGAGATTTCCAATTATAGCTAGTGGCACTGAACCGCATTATTCACTTGAAGTAATGATAGACATAGTATTTGCTTGTTGTATACTTCATAACTTTTTAATGGGAGTGGACATTCATGAAGCACTAATTGCTGAGGTTGATCATGAACTGCTTCAAAATGACATAGATAGATCCCAAACACAACAGCATGATGAAGACTACCGACTAGGATCGCTTCTTAGGGAAGCTATTACAACTGAAATGTGGAACCTGTATGGAGCTTAA
Protein sequence

>Msa0031350

MSNLDSVEDVSNDERIEIIGEVDLDEDEMIDVGMSIQMLVLNHAKKEMERRKHIGSVVLLCHDVHALYLNQILSTCMHSRVTYSPQSEHRRHELMSYLVHTDKCRDIIRMGPEAFMQLCLKLRGTGIVKDTIKSTVEEQVAKFLHIVGHNVKNRTVSFFFYRSGETVSCHFHTVLHAILALGEEFIVQPSGADIPPQILNNSRFYPFFKDCIGAIDGTHIRVKVPRAEAPRFRGRKEHPTQNVLAACNFDMKFTYVLAGWEGTTSDSRILKDALTKEGPLIIPEGKFYLGDAGFMLKQGLLTPYRGVRYHLKEYSSRGPQNPRELFNLRHSSLRNVIERTFGVLKKRFPIIASGTEPHYSLEVMIDIVFACCILHNFLMGVDIHEALIAEVDHELLQNDIDRSQTQQHDEDYRLGSLLREAITTEMWNLYGA*