Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114100 | sp|Q9C5Z3|EIF3E_ARATH | 85.945 | 434 | 61 | 0 | 4 | 437 | 8 | 441 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114100 | A0A072VHL0 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114100 | Msa0224110 | 0.800590 | 1.341874e-48 | -8.615850e-47 |
| Msa0114100 | Msa1012770 | 0.804423 | 2.176073e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114100 | MtrunA17_Chr1g0172621 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| Msa0114100 | MtrunA17_Chr2g0317951 | 93.578 | 436 | 28 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114100 | AT3G57290.1 | 85.945 | 434 | 61 | 0 | 4 | 437 | 8 | 441 | 0.0 | 791 |
Find 120 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGCACCTGATTTAA+AGG | 0.121318 | 1_3:-30504526 | None:intergenic |
| GGACCCCATTACTGAGTTTC+TGG | 0.147601 | 1_3:+30504978 | Msa0114100:CDS |
| AAAGGAGTTTGAATGCTTTA+TGG | 0.163708 | 1_3:+30504305 | Msa0114100:CDS |
| TCCACATTCAAACTGAAATT+TGG | 0.164521 | 1_3:-30504224 | None:intergenic |
| AGCCCCTTAATTTCTGAATT+TGG | 0.177119 | 1_3:+30502481 | Msa0114100:five_prime_UTR |
| ATCACCAAATTCAGAAATTA+AGG | 0.179456 | 1_3:-30502485 | None:intergenic |
| CAAACTGAAATTTGGCATAT+TGG | 0.230513 | 1_3:-30504216 | None:intergenic |
| TCCAGTTTCAGAGTCAATTT+TGG | 0.235308 | 1_3:-30505724 | None:intergenic |
| TCAAGGAACTCGTCCCTTAA+TGG | 0.241702 | 1_3:-30505278 | None:intergenic |
| TCAGAATCCTGCTGCTGTTC+AGG | 0.255503 | 1_3:+30502931 | Msa0114100:CDS |
| GCCAAAATTGACTCTGAAAC+TGG | 0.280218 | 1_3:+30505723 | Msa0114100:CDS |
| CTGAAGTATTGATGCAAAAC+TGG | 0.284674 | 1_3:+30504341 | Msa0114100:CDS |
| CAAGTTGGTCACTCAACTTC+TGG | 0.287708 | 1_3:+30506832 | Msa0114100:CDS |
| ACTTCTCAACTGTACCATTA+AGG | 0.289978 | 1_3:+30505264 | Msa0114100:CDS |
| AACTTACACATTTGGATGAT+TGG | 0.293907 | 1_3:-30505763 | None:intergenic |
| ACGAGATGACGGTCGAGATT+TGG | 0.314496 | 1_3:-30502677 | None:intergenic |
| GGTAAATGTATTAAACAAAA+TGG | 0.318551 | 1_3:-30507067 | None:intergenic |
| AAGGAGTTTGAATGCTTTAT+GGG | 0.338500 | 1_3:+30504306 | Msa0114100:CDS |
| ACATTTACCATGAACTAGTA+TGG | 0.344178 | 1_3:+30507081 | Msa0114100:three_prime_UTR |
| CAAGCCAGAAACTCAGTAAT+GGG | 0.350399 | 1_3:-30504982 | None:intergenic |
| ATCAGGTGCAAAGCAGAATA+TGG | 0.356738 | 1_3:+30504533 | Msa0114100:CDS |
| ACGGGCTAGAATTTCGTAAT+AGG | 0.358047 | 1_3:+30507119 | Msa0114100:three_prime_UTR |
| ACAAAGTCAACTTACACATT+TGG | 0.360127 | 1_3:-30505771 | None:intergenic |
| TTAGATTGCATTCAAATTCA+TGG | 0.363979 | 1_3:+30506962 | Msa0114100:three_prime_UTR |
| ACAAGAGCAGAATTCATATA+AGG | 0.370491 | 1_3:+30504957 | Msa0114100:CDS |
| GGCCGTTAAGGGCCTTTGTA+TGG | 0.391177 | 1_3:-30506802 | None:intergenic |
| ATAGATGTGAAGCAGCTCTT+TGG | 0.394075 | 1_3:-30502583 | None:intergenic |
| ACTTGTAAGTACGGCCGTTA+AGG | 0.394978 | 1_3:-30506814 | None:intergenic |
| TGAAGATGTTCCTCAGGATA+TGG | 0.407476 | 1_3:+30502835 | Msa0114100:CDS |
| ACTTACACATTTGGATGATT+GGG | 0.408036 | 1_3:-30505762 | None:intergenic |
| AAAGGTGTGGAGCACTGGTT+TGG | 0.415097 | 1_3:-30504858 | None:intergenic |
| GTATTCCGCCATTCTTCGTC+TGG | 0.415946 | 1_3:-30502633 | None:intergenic |
| TTTATAAAATCTTTGAATTG+AGG | 0.426183 | 1_3:-30504925 | None:intergenic |
| TTCAACTCGTTTACCAAGGA+AGG | 0.433860 | 1_3:-30505234 | None:intergenic |
| TGGGATGTAACCTTACTTGA+AGG | 0.435234 | 1_3:+30506982 | Msa0114100:three_prime_UTR |
| CTTCTCAACTGTACCATTAA+GGG | 0.436118 | 1_3:+30505265 | Msa0114100:CDS |
| GACCATACAAAGGCCCTTAA+CGG | 0.438051 | 1_3:+30506800 | Msa0114100:CDS |
| CTCAATTCCTGAACAGCAGC+AGG | 0.447203 | 1_3:-30502938 | None:intergenic |
| CTTGTAAGTACGGCCGTTAA+GGG | 0.448182 | 1_3:-30506813 | None:intergenic |
| TCGCAAAAGGTGTGGAGCAC+TGG | 0.455123 | 1_3:-30504863 | None:intergenic |
| GGAAGAGCTCAATCGCTTGA+AGG | 0.456032 | 1_3:+30504375 | Msa0114100:CDS |
| ATTCTCAATGATCCCTTCCT+TGG | 0.459914 | 1_3:+30505221 | Msa0114100:CDS |
| ACATTGACAGTTAAAACAAT+AGG | 0.462396 | 1_3:-30507022 | None:intergenic |
| ATCTGAAACCAGACGAAGAA+TGG | 0.470888 | 1_3:+30502625 | Msa0114100:exon |
| GCAGAATATGGTTGATGCAT+TGG | 0.472142 | 1_3:+30504545 | Msa0114100:CDS |
| ATGATTGGGTTCCATGATAA+CGG | 0.472767 | 1_3:-30505748 | None:intergenic |
| GCAAAACTGGGATATTGCTC+TGG | 0.473242 | 1_3:+30504354 | Msa0114100:CDS |
| TAGATTGCATTCAAATTCAT+GGG | 0.474196 | 1_3:+30506963 | Msa0114100:three_prime_UTR |
| GCCAAATTTCAGTTTGAATG+TGG | 0.476604 | 1_3:+30504223 | Msa0114100:CDS |
| GAATGCTTTATGGGGAAAGC+TGG | 0.479093 | 1_3:+30504315 | Msa0114100:CDS |
| TCACCAAATTCAGAAATTAA+GGG | 0.487228 | 1_3:-30502484 | None:intergenic |
| TGAAACTGGAACCGTTATCA+TGG | 0.490634 | 1_3:+30505737 | Msa0114100:CDS |
| GATTGGTCCTGCGCAGATAG+AGG | 0.497035 | 1_3:+30504186 | Msa0114100:intron |
| CGGGTGTCCATACTAGTTCA+TGG | 0.500599 | 1_3:-30507088 | None:intergenic |
| TCGAGATTTGGTGCCATTCG+CGG | 0.503646 | 1_3:-30502665 | None:intergenic |
| ATTCTAGCCCGTGCTTCGCA+CGG | 0.506048 | 1_3:-30507108 | None:intergenic |
| TCTGGAACAAGCACAAGGTC+AGG | 0.507499 | 1_3:+30506850 | Msa0114100:CDS |
| TGGACACCCGTGCGAAGCAC+GGG | 0.510485 | 1_3:+30507101 | Msa0114100:three_prime_UTR |
| CGTCTGGTTTCAGATGCGGC+TGG | 0.511282 | 1_3:-30502617 | None:intergenic |
| TCAAACTGAAGATGTTCCTC+AGG | 0.511719 | 1_3:+30502829 | Msa0114100:CDS |
| TCAGGATATGGTTGAACGTA+GGG | 0.512113 | 1_3:+30502847 | Msa0114100:CDS |
| AGTGTTTGTTCTATCTTCCC+CGG | 0.515444 | 1_3:+30506914 | Msa0114100:three_prime_UTR |
| TCTGTGTTCTTCCATTGTCA+TGG | 0.519006 | 1_3:-30504588 | None:intergenic |
| TCTTCGTCTGGTTTCAGATG+CGG | 0.524865 | 1_3:-30502621 | None:intergenic |
| TCGACAATGCATACTTGTCC+TGG | 0.525032 | 1_3:-30504627 | None:intergenic |
| TTCTAGCCCGTGCTTCGCAC+GGG | 0.538375 | 1_3:-30507107 | None:intergenic |
| GTTAAACTGTCTAGGTAGGC+TGG | 0.541509 | 1_3:+30506879 | Msa0114100:exon |
| GAAGGAAATAATTGACTCGA+AGG | 0.543192 | 1_3:+30504393 | Msa0114100:CDS |
| TTGTGCATAATGCTCTGTAC+TGG | 0.543995 | 1_3:-30504276 | None:intergenic |
| CTGTGGCCAAGTATCGCAAA+AGG | 0.544639 | 1_3:-30504876 | None:intergenic |
| ATGGACACCCGTGCGAAGCA+CGG | 0.550218 | 1_3:+30507100 | Msa0114100:three_prime_UTR |
| ACAAGCCAGAAACTCAGTAA+TGG | 0.558600 | 1_3:-30504983 | None:intergenic |
| GAGTGACCAACTTGTAAGTA+CGG | 0.559483 | 1_3:-30506823 | None:intergenic |
| CTGCTTCACATCTATCTCAC+AGG | 0.566181 | 1_3:+30502591 | Msa0114100:five_prime_UTR |
| CATTTATTGTCAACAAGCGC+AGG | 0.566791 | 1_3:+30504899 | Msa0114100:CDS |
| ATACGATCTAACACCGCGAA+TGG | 0.568274 | 1_3:+30502652 | Msa0114100:CDS |
| TATAATGCCTCTATCTGCGC+AGG | 0.569760 | 1_3:-30504193 | None:intergenic |
| TGGCATCAAGCTTTGAGCCA+CGG | 0.570397 | 1_3:-30505704 | None:intergenic |
| ATTACGATGAGGCTGAGAGA+TGG | 0.570817 | 1_3:+30505667 | Msa0114100:CDS |
| CACCAAATTCAGAAATTAAG+GGG | 0.570818 | 1_3:-30502483 | None:intergenic |
| AGATGCTGCTGCACCTCTTG+TGG | 0.575541 | 1_3:+30502901 | Msa0114100:CDS |
| AATATTGAATAAAAGAGTGT+AGG | 0.577891 | 1_3:+30507153 | Msa0114100:three_prime_UTR |
| TCAACTCGTTTACCAAGGAA+GGG | 0.581833 | 1_3:-30505233 | None:intergenic |
| AAACATGGTTGATTACGCTA+TGG | 0.581920 | 1_3:+30502787 | Msa0114100:CDS |
| TAACGGCCGTACTTACAAGT+TGG | 0.583546 | 1_3:+30506817 | Msa0114100:CDS |
| GCCAAGTATCGCAAAAGGTG+TGG | 0.585518 | 1_3:-30504871 | None:intergenic |
| TTTGAATGTGGAAACTACTC+TGG | 0.589555 | 1_3:+30504235 | Msa0114100:CDS |
| GCTCGTTAAACTGTCTAGGT+AGG | 0.590460 | 1_3:+30506875 | Msa0114100:exon |
| AGGAGTTTGAATGCTTTATG+GGG | 0.593498 | 1_3:+30504307 | Msa0114100:CDS |
| CATTATGCACAAACAGTGAA+AGG | 0.593672 | 1_3:+30504287 | Msa0114100:CDS |
| ACGAGTTCCTTGAAAATGCT+AGG | 0.595391 | 1_3:+30505288 | Msa0114100:CDS |
| TGAAGTATTGATGCAAAACT+GGG | 0.602113 | 1_3:+30504342 | Msa0114100:CDS |
| TCGTTGATGTATCCTGCAGT+AGG | 0.602989 | 1_3:-30505327 | None:intergenic |
| ATGGTGCACAAAAGAAGATG+AGG | 0.607460 | 1_3:+30505028 | Msa0114100:CDS |
| CTCAGGATATGGTTGAACGT+AGG | 0.609881 | 1_3:+30502846 | Msa0114100:CDS |
| TTCTGAAGAAACGCCACAAG+AGG | 0.610964 | 1_3:-30502914 | None:intergenic |
| GATGCTTAATGACAAATACC+AGG | 0.618615 | 1_3:+30502985 | Msa0114100:CDS |
| GCTAAATTTGAATTACGATG+AGG | 0.619584 | 1_3:+30505656 | Msa0114100:CDS |
| TATGTCAACTATGACTTCGA+TGG | 0.620656 | 1_3:+30505009 | Msa0114100:CDS |
| AAAACAAAATGATGCATCCG+GGG | 0.627658 | 1_3:-30506931 | None:intergenic |
| GGCAGCTCGTTAAACTGTCT+AGG | 0.628058 | 1_3:+30506871 | Msa0114100:exon |
| CAACTTCTGGAACAAGCACA+AGG | 0.628713 | 1_3:+30506845 | Msa0114100:CDS |
| TCTTGAAGAAACTCTAAGAG+TGG | 0.630761 | 1_3:-30502704 | None:intergenic |
| TTATTGTCAACAAGCGCAGG+AGG | 0.633199 | 1_3:+30504902 | Msa0114100:CDS |
| GATAATTGATCTGTTTAACC+AGG | 0.636082 | 1_3:+30504609 | Msa0114100:CDS |
| AGAGTGGAAAGACGAGATGA+CGG | 0.636769 | 1_3:-30502688 | None:intergenic |
| GATACATCAACGAATTGACA+TGG | 0.641261 | 1_3:+30505337 | Msa0114100:CDS |
| TGGTGCACAAAAGAAGATGA+GGG | 0.652117 | 1_3:+30505029 | Msa0114100:CDS |
| TCTATTGAACAACACAAACA+TGG | 0.657978 | 1_3:+30502772 | Msa0114100:CDS |
| TTTCTTCAACTCGTTTACCA+AGG | 0.661725 | 1_3:-30505238 | None:intergenic |
| ATACATCAACGAATTGACAT+GGG | 0.662777 | 1_3:+30505338 | Msa0114100:CDS |
| TGAAACCAGACGAAGAATGG+CGG | 0.664760 | 1_3:+30502628 | Msa0114100:exon |
| CTTCACATCTATCTCACAGG+TGG | 0.669038 | 1_3:+30502594 | Msa0114100:five_prime_UTR |
| CTAGGTAGGCTGGTAGACTG+AGG | 0.673095 | 1_3:+30506889 | Msa0114100:three_prime_UTR |
| TGGATTGTGAATCTCATCCG+TGG | 0.676046 | 1_3:+30505687 | Msa0114100:CDS |
| CTTGTTGACAATAAATGCTG+TGG | 0.698188 | 1_3:-30504893 | None:intergenic |
| CTACGTTCAACCATATCCTG+AGG | 0.701454 | 1_3:-30502845 | None:intergenic |
| TACATCAACGAATTGACATG+GGG | 0.710665 | 1_3:+30505339 | Msa0114100:CDS |
| AAGCCAGAAACTCAGTAATG+GGG | 0.712120 | 1_3:-30504981 | None:intergenic |
| GCAGCTGATAGACCATACAA+AGG | 0.723404 | 1_3:+30506790 | Msa0114100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATTAAAAACAAATTA+AGG | - | chr1_3:30504679-30504698 | None:intergenic | 10.0% |
| !! | TTAATAAAAAAAAACAGAAA+AGG | + | chr1_3:30506202-30506221 | Msa0114100:intron | 10.0% |
| !! | TAATAAAAAAAAACAGAAAA+GGG | + | chr1_3:30506203-30506222 | Msa0114100:intron | 10.0% |
| !! | TTATAACTTAGCTAAAATAT+AGG | + | chr1_3:30503602-30503621 | Msa0114100:intron | 15.0% |
| !! | TAATATTCCAAAAAAACAAT+GGG | - | chr1_3:30504072-30504091 | None:intergenic | 15.0% |
| !! | ATAATATTCCAAAAAAACAA+TGG | - | chr1_3:30504073-30504092 | None:intergenic | 15.0% |
| !! | TTTATAAAATCTTTGAATTG+AGG | - | chr1_3:30504928-30504947 | None:intergenic | 15.0% |
| !!! | ACAACTAATTTTTTTACTAT+AGG | + | chr1_3:30505586-30505605 | Msa0114100:intron | 15.0% |
| !!! | CAACTAATTTTTTTACTATA+GGG | + | chr1_3:30505587-30505606 | Msa0114100:intron | 15.0% |
| !!! | CTTCTATTTTCTAAAATTAT+TGG | + | chr1_3:30505931-30505950 | Msa0114100:intron | 15.0% |
| !! | ATTTCAAAAAAAAATTACCA+GGG | - | chr1_3:30506006-30506025 | None:intergenic | 15.0% |
| !!! | CAAAATTTTGTTTTTCAAAA+AGG | + | chr1_3:30506035-30506054 | Msa0114100:intron | 15.0% |
| !! | AATAAAAAAAAACAGAAAAG+GGG | + | chr1_3:30506204-30506223 | Msa0114100:intron | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr1_3:30506544-30506563 | Msa0114100:intron | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr1_3:30506545-30506564 | Msa0114100:intron | 15.0% |
| !!! | TTCAATTATTTTTTTTTACC+AGG | + | chr1_3:30506574-30506593 | Msa0114100:intron | 15.0% |
| !!! | TCAATTATTTTTTTTTACCA+GGG | + | chr1_3:30506575-30506594 | Msa0114100:intron | 15.0% |
| !!! | ATTTTAGCCAAAATTATTAT+TGG | + | chr1_3:30506640-30506659 | Msa0114100:intron | 15.0% |
| !!! | TGTGATGTGTTTTTTTTTTT+TGG | + | chr1_3:30503103-30503122 | Msa0114100:intron | 20.0% |
| !!! | TGTTTTTTTTTTTTGGTTGT+TGG | + | chr1_3:30503110-30503129 | Msa0114100:intron | 20.0% |
| !!! | GTTTTTTTTTTTTGGTTGTT+GGG | + | chr1_3:30503111-30503130 | Msa0114100:intron | 20.0% |
| !!! | AAATCAATCAATTTTTCTCA+GGG | - | chr1_3:30503169-30503188 | None:intergenic | 20.0% |
| !!! | AAAATCAATCAATTTTTCTC+AGG | - | chr1_3:30503170-30503189 | None:intergenic | 20.0% |
| !!! | GAATTCATTTTTGTATTGTT+TGG | + | chr1_3:30503265-30503284 | Msa0114100:intron | 20.0% |
| !!! | TACACATCTATAATCAATTT+TGG | + | chr1_3:30503530-30503549 | Msa0114100:intron | 20.0% |
| !! | TTGTTTGTTTAATTGAAGAT+GGG | + | chr1_3:30503782-30503801 | Msa0114100:intron | 20.0% |
| !!! | GATTGTTATTAGAAACAATA+AGG | - | chr1_3:30504031-30504050 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTGTTTTTCTTC+TGG | + | chr1_3:30504109-30504128 | Msa0114100:intron | 20.0% |
| !! | TTTCTATCGTATTAACTTAT+GGG | + | chr1_3:30505835-30505854 | Msa0114100:intron | 20.0% |
| !! | GATTTCAAAAAAAAATTACC+AGG | - | chr1_3:30506007-30506026 | None:intergenic | 20.0% |
| !!! | TTGAAAAACAAAATTTTGCA+GGG | - | chr1_3:30506033-30506052 | None:intergenic | 20.0% |
| !!! | TTTGAAAAACAAAATTTTGC+AGG | - | chr1_3:30506034-30506053 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAACAGAAAAGG+GGG | + | chr1_3:30506205-30506224 | Msa0114100:intron | 20.0% |
| !!! | ATTTTTGTTTTGAAAGATTG+CGG | - | chr1_3:30506411-30506430 | None:intergenic | 20.0% |
| !! | ATGAAGCAATTCAAAAATTA+AGG | - | chr1_3:30506758-30506777 | None:intergenic | 20.0% |
| !! | GGTAAATGTATTAAACAAAA+TGG | - | chr1_3:30507070-30507089 | None:intergenic | 20.0% |
| !!! | AATATTGAATAAAAGAGTGT+AGG | + | chr1_3:30507153-30507172 | Msa0114100:three_prime_UTR | 20.0% |
| ! | TCACCAAATTCAGAAATTAA+GGG | - | chr1_3:30502487-30502506 | None:intergenic | 25.0% |
| ! | ATCACCAAATTCAGAAATTA+AGG | - | chr1_3:30502488-30502507 | None:intergenic | 25.0% |
| !!! | ATAGATCGATTTTAGCTTTA+AGG | - | chr1_3:30502757-30502776 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTGATGAATGATA+AGG | + | chr1_3:30503041-30503060 | Msa0114100:intron | 25.0% |
| ! | AGTAATTAGTCAGATATAAC+AGG | + | chr1_3:30503065-30503084 | Msa0114100:intron | 25.0% |
| ! | TATGTAGAATTGTGTATGTT+TGG | + | chr1_3:30503202-30503221 | Msa0114100:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr1_3:30503511-30503530 | None:intergenic | 25.0% |
| !!! | AGGTTTTGTCTGATAATTTT+AGG | + | chr1_3:30503622-30503641 | Msa0114100:intron | 25.0% |
| ! | GTTGTTTGTTTAATTGAAGA+TGG | + | chr1_3:30503781-30503800 | Msa0114100:intron | 25.0% |
| ! | TAGTTACTATATGTCTTATG+TGG | - | chr1_3:30503818-30503837 | None:intergenic | 25.0% |
| ! | ATAAACGCAAAAACAGTTTA+TGG | + | chr1_3:30503872-30503891 | Msa0114100:intron | 25.0% |
| ! | TTATCTTATGACATAAGTAC+TGG | - | chr1_3:30503916-30503935 | None:intergenic | 25.0% |
| ! | GCATTTGAAAGAACTTATAT+AGG | - | chr1_3:30503940-30503959 | None:intergenic | 25.0% |
| ! | TTTGAATTCTGACTTCTAAA+AGG | + | chr1_3:30504151-30504170 | Msa0114100:intron | 25.0% |
| !! | TTTTTCATCACCTTTAAATC+AGG | + | chr1_3:30504516-30504535 | Msa0114100:CDS | 25.0% |
| !! | TAAAAACAAATTAAGGCATC+CGG | - | chr1_3:30504672-30504691 | None:intergenic | 25.0% |
| ! | GCATATTATAATCAACAAAG+AGG | - | chr1_3:30505177-30505196 | None:intergenic | 25.0% |
| ! | ATAAAAGTTGTTAAATCCGA+CGG | - | chr1_3:30505399-30505418 | None:intergenic | 25.0% |
| ! | AATAGACTATCAAAGATCAA+TGG | - | chr1_3:30505468-30505487 | None:intergenic | 25.0% |
| ! | CTTTCTATCGTATTAACTTA+TGG | + | chr1_3:30505834-30505853 | Msa0114100:intron | 25.0% |
| ! | TTCTATCGTATTAACTTATG+GGG | + | chr1_3:30505836-30505855 | Msa0114100:intron | 25.0% |
| !!! | TATTGGCTAAAATATGCTTT+TGG | + | chr1_3:30505948-30505967 | Msa0114100:intron | 25.0% |
| ! | TGTAAAATGACATAAATGAC+AGG | - | chr1_3:30506137-30506156 | None:intergenic | 25.0% |
| ! | GTGTTTATTTATGGTTTAGA+TGG | - | chr1_3:30506505-30506524 | None:intergenic | 25.0% |
| !! | AAGGAAAGTGTGTTTATTTA+TGG | - | chr1_3:30506514-30506533 | None:intergenic | 25.0% |
| !!! | TGTTTTTTAAAAAGTGAGCA+AGG | - | chr1_3:30506533-30506552 | None:intergenic | 25.0% |
| !!! | TTTTGGCTAAAATATGCTTT+TGG | - | chr1_3:30506633-30506652 | None:intergenic | 25.0% |
| !! | AGAGACACCAATAATAATTT+TGG | - | chr1_3:30506650-30506669 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTCCTTTGTTTTT+AGG | + | chr1_3:30506730-30506749 | Msa0114100:intron | 25.0% |
| ! | ATCCTAAAAACAAAGGAAAA+AGG | - | chr1_3:30506735-30506754 | None:intergenic | 25.0% |
| ! | ATTAAGGATCCTAAAAACAA+AGG | - | chr1_3:30506742-30506761 | None:intergenic | 25.0% |
| ! | AAAAAACAAAATGATGCATC+CGG | - | chr1_3:30506936-30506955 | None:intergenic | 25.0% |
| ! | TTAGATTGCATTCAAATTCA+TGG | + | chr1_3:30506962-30506981 | Msa0114100:three_prime_UTR | 25.0% |
| ! | TAGATTGCATTCAAATTCAT+GGG | + | chr1_3:30506963-30506982 | Msa0114100:three_prime_UTR | 25.0% |
| ! | AAAAAAACAACCTTCAAGTA+AGG | - | chr1_3:30506995-30507014 | None:intergenic | 25.0% |
| ! | ACATTGACAGTTAAAACAAT+AGG | - | chr1_3:30507025-30507044 | None:intergenic | 25.0% |
| CACCAAATTCAGAAATTAAG+GGG | - | chr1_3:30502486-30502505 | None:intergenic | 30.0% | |
| GGGCGAAAAAGAAATAATAA+GGG | - | chr1_3:30502517-30502536 | None:intergenic | 30.0% | |
| TCTATTGAACAACACAAACA+TGG | + | chr1_3:30502772-30502791 | Msa0114100:CDS | 30.0% | |
| AAGCGATTATTTATGAAACC+TGG | - | chr1_3:30503006-30503025 | None:intergenic | 30.0% | |
| AAAAAACACATCACATTGCA+TGG | - | chr1_3:30503098-30503117 | None:intergenic | 30.0% | |
| !!! | AATTTTGATTCCTCCAAAAG+TGG | - | chr1_3:30503230-30503249 | None:intergenic | 30.0% |
| !! | GCATTGACAAGAATTGATTT+TGG | + | chr1_3:30503326-30503345 | Msa0114100:intron | 30.0% |
| ! | AGTTCAAGTAGAATCGTTTT+TGG | + | chr1_3:30503457-30503476 | Msa0114100:intron | 30.0% |
| AGCAAACTCAATTCTACTTT+AGG | + | chr1_3:30503481-30503500 | Msa0114100:intron | 30.0% | |
| GCAAACTCAATTCTACTTTA+GGG | + | chr1_3:30503482-30503501 | Msa0114100:intron | 30.0% | |
| ! | TTAGGTAAGTTTAGAATGCT+AGG | + | chr1_3:30503640-30503659 | Msa0114100:intron | 30.0% |
| TGGTGAGTAATCTTATAGTA+AGG | + | chr1_3:30503683-30503702 | Msa0114100:intron | 30.0% | |
| GGTGAGTAATCTTATAGTAA+GGG | + | chr1_3:30503684-30503703 | Msa0114100:intron | 30.0% | |
| GTGAGTAATCTTATAGTAAG+GGG | + | chr1_3:30503685-30503704 | Msa0114100:intron | 30.0% | |
| TGAGTAATCTTATAGTAAGG+GGG | + | chr1_3:30503686-30503705 | Msa0114100:intron | 30.0% | |
| !!! | ATATCCTCCCATTGTTTTTT+TGG | + | chr1_3:30504062-30504081 | Msa0114100:intron | 30.0% |
| TATTCCAAAAAAACAATGGG+AGG | - | chr1_3:30504069-30504088 | None:intergenic | 30.0% | |
| ! | AATTCTGACTTCTAAAAGGA+TGG | + | chr1_3:30504155-30504174 | Msa0114100:intron | 30.0% |
| CAAACTGAAATTTGGCATAT+TGG | - | chr1_3:30504219-30504238 | None:intergenic | 30.0% | |
| TCCACATTCAAACTGAAATT+TGG | - | chr1_3:30504227-30504246 | None:intergenic | 30.0% | |
| AAAGGAGTTTGAATGCTTTA+TGG | + | chr1_3:30504305-30504324 | Msa0114100:CDS | 30.0% | |
| AAGGAGTTTGAATGCTTTAT+GGG | + | chr1_3:30504306-30504325 | Msa0114100:CDS | 30.0% | |
| !! | TGAAGTATTGATGCAAAACT+GGG | + | chr1_3:30504342-30504361 | Msa0114100:CDS | 30.0% |
| !!! | ATCTTTTTCAACCATGACAA+TGG | + | chr1_3:30504577-30504596 | Msa0114100:CDS | 30.0% |
| GATAATTGATCTGTTTAACC+AGG | + | chr1_3:30504609-30504628 | Msa0114100:CDS | 30.0% | |
| ! | AAAAACAAATTAAGGCATCC+GGG | - | chr1_3:30504671-30504690 | None:intergenic | 30.0% |
| ACAAGAGCAGAATTCATATA+AGG | + | chr1_3:30504957-30504976 | Msa0114100:CDS | 30.0% | |
| GGTGAAGCAAATACTTAATA+AGG | - | chr1_3:30505156-30505175 | None:intergenic | 30.0% | |
| ! | ATTACCTGCATTTTTGCAAA+TGG | - | chr1_3:30505203-30505222 | None:intergenic | 30.0% |
| ATACATCAACGAATTGACAT+GGG | + | chr1_3:30505338-30505357 | Msa0114100:CDS | 30.0% | |
| GCTAAATTTGAATTACGATG+AGG | + | chr1_3:30505656-30505675 | Msa0114100:CDS | 30.0% | |
| ACTTACACATTTGGATGATT+GGG | - | chr1_3:30505765-30505784 | None:intergenic | 30.0% | |
| AACTTACACATTTGGATGAT+TGG | - | chr1_3:30505766-30505785 | None:intergenic | 30.0% | |
| ACAAAGTCAACTTACACATT+TGG | - | chr1_3:30505774-30505793 | None:intergenic | 30.0% | |
| ! | TTACCCGACTTGATAAATAA+AGG | + | chr1_3:30505793-30505812 | Msa0114100:intron | 30.0% |
| ! | TACCCGACTTGATAAATAAA+GGG | + | chr1_3:30505794-30505813 | Msa0114100:intron | 30.0% |
| ! | AAGCCCTTTATTTATCAAGT+CGG | - | chr1_3:30505800-30505819 | None:intergenic | 30.0% |
| !! | AAAGGGCTTTTATAGTCTTA+TGG | + | chr1_3:30505811-30505830 | Msa0114100:intron | 30.0% |
| !! | AATATAGCGAATTTGGGTTT+TGG | + | chr1_3:30505979-30505998 | Msa0114100:intron | 30.0% |
| AAAATGACATAAATGACAGG+TGG | - | chr1_3:30506134-30506153 | None:intergenic | 30.0% | |
| GATTCAATAGATGGAATTCT+GGG | - | chr1_3:30506381-30506400 | None:intergenic | 30.0% | |
| AGATTCAATAGATGGAATTC+TGG | - | chr1_3:30506382-30506401 | None:intergenic | 30.0% | |
| !!! | TTTTGAGATTGAACAACTTG+CGG | - | chr1_3:30506448-30506467 | None:intergenic | 30.0% |
| !! | AATATAGCGAATTTGGGTTT+TGG | - | chr1_3:30505979-30505998 | None:intergenic | 30.0% |
| TAAAACACAGACATGAAATC+TGG | - | chr1_3:30506693-30506712 | None:intergenic | 30.0% | |
| !!! | CTGTGTTTTAACTAGTATTC+TGG | + | chr1_3:30506703-30506722 | Msa0114100:intron | 30.0% |
| AAAAACAAAATGATGCATCC+GGG | - | chr1_3:30506935-30506954 | None:intergenic | 30.0% | |
| ACATTTACCATGAACTAGTA+TGG | + | chr1_3:30507081-30507100 | Msa0114100:three_prime_UTR | 30.0% | |
| AGCCCCTTAATTTCTGAATT+TGG | + | chr1_3:30502481-30502500 | Msa0114100:five_prime_UTR | 35.0% | |
| GGGGCGAAAAAGAAATAATA+AGG | - | chr1_3:30502518-30502537 | None:intergenic | 35.0% | |
| ! | TCAAAAAAGCTTCGTCGTTT+TGG | + | chr1_3:30502540-30502559 | Msa0114100:five_prime_UTR | 35.0% |
| !!! | GCAGCTCTTTGGTTTTTTTA+GGG | - | chr1_3:30502575-30502594 | None:intergenic | 35.0% |
| !!! | AGCAGCTCTTTGGTTTTTTT+AGG | - | chr1_3:30502576-30502595 | None:intergenic | 35.0% |
| ! | TCTTGAAGAAACTCTAAGAG+TGG | - | chr1_3:30502707-30502726 | None:intergenic | 35.0% |
| !!! | CGATTTTAGCTTTAAGGATG+TGG | - | chr1_3:30502751-30502770 | None:intergenic | 35.0% |
| AAACATGGTTGATTACGCTA+TGG | + | chr1_3:30502787-30502806 | Msa0114100:CDS | 35.0% | |
| GATGCTTAATGACAAATACC+AGG | + | chr1_3:30502985-30503004 | Msa0114100:CDS | 35.0% | |
| !!! | TGTTGGGTTTTTTCTAGACT+AGG | + | chr1_3:30503127-30503146 | Msa0114100:intron | 35.0% |
| TTCTAGACTAGGTGTATGTT+TGG | + | chr1_3:30503138-30503157 | Msa0114100:intron | 35.0% | |
| !! | TGTATGTTTGGTTCCACTTT+TGG | + | chr1_3:30503214-30503233 | Msa0114100:intron | 35.0% |
| !! | GATTTTGGAAACTGAGTTGA+TGG | + | chr1_3:30503341-30503360 | Msa0114100:intron | 35.0% |
| !! | GAAACTGAGTTGATGGTAAT+GGG | + | chr1_3:30503348-30503367 | Msa0114100:intron | 35.0% |
| !!! | AATTTTGGCTCCTACAAAAG+TGG | + | chr1_3:30503545-30503564 | Msa0114100:intron | 35.0% |
| !! | ATGTTTGGTTCCACTTTTGT+AGG | - | chr1_3:30503558-30503577 | None:intergenic | 35.0% |
| TAGGTGATTTAAGCTACCAA+CGG | + | chr1_3:30503659-30503678 | Msa0114100:intron | 35.0% | |
| ! | AAAGGATGGATTCTACAGAT+TGG | + | chr1_3:30504169-30504188 | Msa0114100:intron | 35.0% |
| GCCAAATTTCAGTTTGAATG+TGG | + | chr1_3:30504223-30504242 | Msa0114100:CDS | 35.0% | |
| TTTGAATGTGGAAACTACTC+TGG | + | chr1_3:30504235-30504254 | Msa0114100:CDS | 35.0% | |
| CATTATGCACAAACAGTGAA+AGG | + | chr1_3:30504287-30504306 | Msa0114100:CDS | 35.0% | |
| AGGAGTTTGAATGCTTTATG+GGG | + | chr1_3:30504307-30504326 | Msa0114100:CDS | 35.0% | |
| ! | GTTTTGCATCAATACTTCAG+CGG | - | chr1_3:30504341-30504360 | None:intergenic | 35.0% |
| !! | CTGAAGTATTGATGCAAAAC+TGG | + | chr1_3:30504341-30504360 | Msa0114100:CDS | 35.0% |
| !! | GAAGGAAATAATTGACTCGA+AGG | + | chr1_3:30504393-30504412 | Msa0114100:CDS | 35.0% |
| ! | AAAACAAATTAAGGCATCCG+GGG | - | chr1_3:30504670-30504689 | None:intergenic | 35.0% |
| ! | TGACTATTTCTTGCATGTTC+TGG | + | chr1_3:30504771-30504790 | Msa0114100:intron | 35.0% |
| ! | GACTATTTCTTGCATGTTCT+GGG | + | chr1_3:30504772-30504791 | Msa0114100:intron | 35.0% |
| TGATGTATGATATCATGTCC+AGG | + | chr1_3:30504821-30504840 | Msa0114100:intron | 35.0% | |
| TTGGATTGCATTAAGATACC+TGG | - | chr1_3:30504842-30504861 | None:intergenic | 35.0% | |
| CTTGTTGACAATAAATGCTG+TGG | - | chr1_3:30504896-30504915 | None:intergenic | 35.0% | |
| TATGTCAACTATGACTTCGA+TGG | + | chr1_3:30505009-30505028 | Msa0114100:CDS | 35.0% | |
| CTTACCATTTGCAAAAATGC+AGG | + | chr1_3:30505196-30505215 | Msa0114100:intron | 35.0% | |
| TTTCTTCAACTCGTTTACCA+AGG | - | chr1_3:30505241-30505260 | None:intergenic | 35.0% | |
| ACTTCTCAACTGTACCATTA+AGG | + | chr1_3:30505264-30505283 | Msa0114100:CDS | 35.0% | |
| CTTCTCAACTGTACCATTAA+GGG | + | chr1_3:30505265-30505284 | Msa0114100:CDS | 35.0% | |
| ! | TAAACAGCCTAGCATTTTCA+AGG | - | chr1_3:30505298-30505317 | None:intergenic | 35.0% |
| !!! | TTATTTTTGAGACCTACTGC+AGG | + | chr1_3:30505315-30505334 | Msa0114100:CDS | 35.0% |
| GATACATCAACGAATTGACA+TGG | + | chr1_3:30505337-30505356 | Msa0114100:CDS | 35.0% | |
| TACATCAACGAATTGACATG+GGG | + | chr1_3:30505339-30505358 | Msa0114100:CDS | 35.0% | |
| ! | CGACATTTGAAGCAGATATT+AGG | - | chr1_3:30505371-30505390 | None:intergenic | 35.0% |
| ! | AAGTTGAGGTATGTTTTTCC+AGG | - | chr1_3:30505440-30505459 | None:intergenic | 35.0% |
| ! | ACTTAATTGATGATTCCCTC+TGG | + | chr1_3:30505541-30505560 | Msa0114100:intron | 35.0% |
| ! | TCCAGTTTCAGAGTCAATTT+TGG | - | chr1_3:30505727-30505746 | None:intergenic | 35.0% |
| ATGATTGGGTTCCATGATAA+CGG | - | chr1_3:30505751-30505770 | None:intergenic | 35.0% | |
| ! | AGCCCTTTATTTATCAAGTC+GGG | - | chr1_3:30505799-30505818 | None:intergenic | 35.0% |
| CCAAATTCGCTATATTTGCA+GGG | - | chr1_3:30506606-30506625 | None:intergenic | 35.0% | |
| CCTGCAAATATAGCGAATTT+GGG | + | chr1_3:30505973-30505992 | Msa0114100:intron | 35.0% | |
| AATCAACAGAGGAAGAACAA+AGG | - | chr1_3:30506274-30506293 | None:intergenic | 35.0% | |
| ATTCACGAAAACGAAGGAAA+GGG | - | chr1_3:30506334-30506353 | None:intergenic | 35.0% | |
| AATTCACGAAAACGAAGGAA+AGG | - | chr1_3:30506335-30506354 | None:intergenic | 35.0% | |
| TTTCGTGAATTCTTGCATCA+AGG | + | chr1_3:30506344-30506363 | Msa0114100:intron | 35.0% | |
| AATAGATGGAATTCTGGGTT+TGG | - | chr1_3:30506376-30506395 | None:intergenic | 35.0% | |
| GGTTGTTGAGATTCAATAGA+TGG | - | chr1_3:30506390-30506409 | None:intergenic | 35.0% | |
| CCTGCAAATATAGCGAATTT+GGG | - | chr1_3:30505973-30505992 | None:intergenic | 35.0% | |
| CCAAATTCGCTATATTTGCA+GGG | + | chr1_3:30506606-30506625 | Msa0114100:intron | 35.0% | |
| ! | TTTTGAATTGCTTCATGTCC+AGG | + | chr1_3:30506762-30506781 | Msa0114100:intron | 35.0% |
| AAAACAAAATGATGCATCCG+GGG | - | chr1_3:30506934-30506953 | None:intergenic | 35.0% | |
| !!! | ACGACGAAGCTTTTTTGAGT+GGG | - | chr1_3:30502538-30502557 | None:intergenic | 40.0% |
| !!! | AACGACGAAGCTTTTTTGAG+TGG | - | chr1_3:30502539-30502558 | None:intergenic | 40.0% |
| ATAGATGTGAAGCAGCTCTT+TGG | - | chr1_3:30502586-30502605 | None:intergenic | 40.0% | |
| ! | ATCTGAAACCAGACGAAGAA+TGG | + | chr1_3:30502625-30502644 | Msa0114100:exon | 40.0% |
| TCAAACTGAAGATGTTCCTC+AGG | + | chr1_3:30502829-30502848 | Msa0114100:CDS | 40.0% | |
| TGAAGATGTTCCTCAGGATA+TGG | + | chr1_3:30502835-30502854 | Msa0114100:CDS | 40.0% | |
| TCAGGATATGGTTGAACGTA+GGG | + | chr1_3:30502847-30502866 | Msa0114100:CDS | 40.0% | |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | + | chr1_3:30503217-30503236 | Msa0114100:intron | 40.0% |
| !! | GGAAACTGAGTTGATGGTAA+TGG | + | chr1_3:30503347-30503366 | Msa0114100:intron | 40.0% |
| AGTGGAACCAAACATACACT+AGG | + | chr1_3:30503563-30503582 | Msa0114100:intron | 40.0% | |
| TTGCAGTCCTAGTGTATGTT+TGG | - | chr1_3:30503573-30503592 | None:intergenic | 40.0% | |
| AGGTGATTTAAGCTACCAAC+GGG | + | chr1_3:30503660-30503679 | Msa0114100:intron | 40.0% | |
| !! | TCTTATAGTAAGGGGGTGTT+TGG | + | chr1_3:30503693-30503712 | Msa0114100:intron | 40.0% |
| ! | CTAGCAAGAGAGCATATTGA+GGG | - | chr1_3:30503962-30503981 | None:intergenic | 40.0% |
| ! | ACTAGCAAGAGAGCATATTG+AGG | - | chr1_3:30503963-30503982 | None:intergenic | 40.0% |
| AATATGCTCTCTTGCTAGTG+AGG | + | chr1_3:30503964-30503983 | Msa0114100:intron | 40.0% | |
| TTGTGCATAATGCTCTGTAC+TGG | - | chr1_3:30504279-30504298 | None:intergenic | 40.0% | |
| CTGCTTTGCACCTGATTTAA+AGG | - | chr1_3:30504529-30504548 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGCAGAATA+TGG | + | chr1_3:30504533-30504552 | Msa0114100:CDS | 40.0% | |
| ! | GCAGAATATGGTTGATGCAT+TGG | + | chr1_3:30504545-30504564 | Msa0114100:CDS | 40.0% |
| TCTGTGTTCTTCCATTGTCA+TGG | - | chr1_3:30504591-30504610 | None:intergenic | 40.0% | |
| ! | AAACAAATTAAGGCATCCGG+GGG | - | chr1_3:30504669-30504688 | None:intergenic | 40.0% |
| CATTTATTGTCAACAAGCGC+AGG | + | chr1_3:30504899-30504918 | Msa0114100:CDS | 40.0% | |
| AAGCCAGAAACTCAGTAATG+GGG | - | chr1_3:30504984-30505003 | None:intergenic | 40.0% | |
| CAAGCCAGAAACTCAGTAAT+GGG | - | chr1_3:30504985-30505004 | None:intergenic | 40.0% | |
| ACAAGCCAGAAACTCAGTAA+TGG | - | chr1_3:30504986-30505005 | None:intergenic | 40.0% | |
| ATGGTGCACAAAAGAAGATG+AGG | + | chr1_3:30505028-30505047 | Msa0114100:CDS | 40.0% | |
| TGGTGCACAAAAGAAGATGA+GGG | + | chr1_3:30505029-30505048 | Msa0114100:CDS | 40.0% | |
| ATTCTCAATGATCCCTTCCT+TGG | + | chr1_3:30505221-30505240 | Msa0114100:CDS | 40.0% | |
| TCAACTCGTTTACCAAGGAA+GGG | - | chr1_3:30505236-30505255 | None:intergenic | 40.0% | |
| TTCAACTCGTTTACCAAGGA+AGG | - | chr1_3:30505237-30505256 | None:intergenic | 40.0% | |
| ACGAGTTCCTTGAAAATGCT+AGG | + | chr1_3:30505288-30505307 | Msa0114100:CDS | 40.0% | |
| TTCAAATGTCGTACTACCGT+CGG | + | chr1_3:30505380-30505399 | Msa0114100:intron | 40.0% | |
| ! | TTTTTCCAGGTGAACAAGAG+AGG | - | chr1_3:30505427-30505446 | None:intergenic | 40.0% |
| !! | GCCAAAATTGACTCTGAAAC+TGG | + | chr1_3:30505723-30505742 | Msa0114100:CDS | 40.0% |
| TGAAACTGGAACCGTTATCA+TGG | + | chr1_3:30505737-30505756 | Msa0114100:CDS | 40.0% | |
| TACAAGTGTCAGTGTTGTGT+GGG | - | chr1_3:30505897-30505916 | None:intergenic | 40.0% | |
| CCCTGCAAATATAGCGAATT+TGG | + | chr1_3:30505972-30505991 | Msa0114100:intron | 40.0% | |
| CCCAAATTCGCTATATTTGC+AGG | - | chr1_3:30506605-30506624 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTTTTGCATATG+TGG | + | chr1_3:30506084-30506103 | Msa0114100:intron | 40.0% |
| AACAGAGGAAGAACAAAGGA+TGG | - | chr1_3:30506270-30506289 | None:intergenic | 40.0% | |
| TGAAATGCGAAGGAATGGAA+CGG | - | chr1_3:30506310-30506329 | None:intergenic | 40.0% | |
| GCAAGAATTCACGAAAACGA+AGG | - | chr1_3:30506340-30506359 | None:intergenic | 40.0% | |
| CCCAAATTCGCTATATTTGC+AGG | + | chr1_3:30506605-30506624 | Msa0114100:intron | 40.0% | |
| CCCTGCAAATATAGCGAATT+TGG | - | chr1_3:30505972-30505991 | None:intergenic | 40.0% | |
| GAGTGACCAACTTGTAAGTA+CGG | - | chr1_3:30506826-30506845 | None:intergenic | 40.0% | |
| AGTGTTTGTTCTATCTTCCC+CGG | + | chr1_3:30506914-30506933 | Msa0114100:three_prime_UTR | 40.0% | |
| TGGGATGTAACCTTACTTGA+AGG | + | chr1_3:30506982-30507001 | Msa0114100:three_prime_UTR | 40.0% | |
| !! | ACGGGCTAGAATTTCGTAAT+AGG | + | chr1_3:30507119-30507138 | Msa0114100:three_prime_UTR | 40.0% |
| !!! | CGACGAAGCTTTTTTGAGTG+GGG | - | chr1_3:30502537-30502556 | None:intergenic | 45.0% |
| CTGCTTCACATCTATCTCAC+AGG | + | chr1_3:30502591-30502610 | Msa0114100:five_prime_UTR | 45.0% | |
| CTTCACATCTATCTCACAGG+TGG | + | chr1_3:30502594-30502613 | Msa0114100:five_prime_UTR | 45.0% | |
| ! | TCTTCGTCTGGTTTCAGATG+CGG | - | chr1_3:30502624-30502643 | None:intergenic | 45.0% |
| TGAAACCAGACGAAGAATGG+CGG | + | chr1_3:30502628-30502647 | Msa0114100:exon | 45.0% | |
| ATACGATCTAACACCGCGAA+TGG | + | chr1_3:30502652-30502671 | Msa0114100:CDS | 45.0% | |
| AGAGTGGAAAGACGAGATGA+CGG | - | chr1_3:30502691-30502710 | None:intergenic | 45.0% | |
| CTACGTTCAACCATATCCTG+AGG | - | chr1_3:30502848-30502867 | None:intergenic | 45.0% | |
| CTCAGGATATGGTTGAACGT+AGG | + | chr1_3:30502846-30502865 | Msa0114100:CDS | 45.0% | |
| ! | TTCTGAAGAAACGCCACAAG+AGG | - | chr1_3:30502917-30502936 | None:intergenic | 45.0% |
| TGATTTAAGCTACCAACGGG+TGG | + | chr1_3:30503663-30503682 | Msa0114100:intron | 45.0% | |
| TAAGATTACTCACCACCCGT+TGG | - | chr1_3:30503678-30503697 | None:intergenic | 45.0% | |
| TATAATGCCTCTATCTGCGC+AGG | - | chr1_3:30504196-30504215 | None:intergenic | 45.0% | |
| GAATGCTTTATGGGGAAAGC+TGG | + | chr1_3:30504315-30504334 | Msa0114100:CDS | 45.0% | |
| GCAAAACTGGGATATTGCTC+TGG | + | chr1_3:30504354-30504373 | Msa0114100:CDS | 45.0% | |
| CAGCATGACAAGCAAGAAAG+TGG | - | chr1_3:30504448-30504467 | None:intergenic | 45.0% | |
| TCGACAATGCATACTTGTCC+TGG | - | chr1_3:30504630-30504649 | None:intergenic | 45.0% | |
| !! | CTTATTTTTCCTTTCCCCCC+CGG | + | chr1_3:30504650-30504669 | Msa0114100:intron | 45.0% |
| ! | AACAAATTAAGGCATCCGGG+GGG | - | chr1_3:30504668-30504687 | None:intergenic | 45.0% |
| AATTGCATGCTTCCTCTCTC+TGG | + | chr1_3:30504747-30504766 | Msa0114100:intron | 45.0% | |
| ATTGCATGCTTCCTCTCTCT+GGG | + | chr1_3:30504748-30504767 | Msa0114100:intron | 45.0% | |
| AGAAATAGTCACCCAGAGAG+AGG | - | chr1_3:30504762-30504781 | None:intergenic | 45.0% | |
| ! | TCCACACCTTTTGCGATACT+TGG | + | chr1_3:30504870-30504889 | Msa0114100:CDS | 45.0% |
| TTATTGTCAACAAGCGCAGG+AGG | + | chr1_3:30504902-30504921 | Msa0114100:CDS | 45.0% | |
| TCAAGGAACTCGTCCCTTAA+TGG | - | chr1_3:30505281-30505300 | None:intergenic | 45.0% | |
| TCGTTGATGTATCCTGCAGT+AGG | - | chr1_3:30505330-30505349 | None:intergenic | 45.0% | |
| ATAAGCCTCTCTTGTTCACC+TGG | + | chr1_3:30505419-30505438 | Msa0114100:intron | 45.0% | |
| GATCAATGGCACAGAAGTTG+AGG | - | chr1_3:30505454-30505473 | None:intergenic | 45.0% | |
| ! | ATTGATGATTCCCTCTGGTC+TGG | + | chr1_3:30505546-30505565 | Msa0114100:intron | 45.0% |
| GTAAAGTAGACCAGACCAGA+GGG | - | chr1_3:30505559-30505578 | None:intergenic | 45.0% | |
| TGTAAAGTAGACCAGACCAG+AGG | - | chr1_3:30505560-30505579 | None:intergenic | 45.0% | |
| ATTACGATGAGGCTGAGAGA+TGG | + | chr1_3:30505667-30505686 | Msa0114100:CDS | 45.0% | |
| TGGATTGTGAATCTCATCCG+TGG | + | chr1_3:30505687-30505706 | Msa0114100:CDS | 45.0% | |
| TCAGTGTTGTGTGGGAAACT+TGG | - | chr1_3:30505889-30505908 | None:intergenic | 45.0% | |
| CTACAAGTGTCAGTGTTGTG+TGG | - | chr1_3:30505898-30505917 | None:intergenic | 45.0% | |
| TCAGCAAGAAAGTGGGTCTA+AGG | - | chr1_3:30506062-30506081 | None:intergenic | 45.0% | |
| TGCCAGATCAGCAAGAAAGT+GGG | - | chr1_3:30506069-30506088 | None:intergenic | 45.0% | |
| !! | CTTCCTCTGTTGATTCAACC+CGG | + | chr1_3:30506279-30506298 | Msa0114100:intron | 45.0% |
| ! | AAACCGGGTTGAATCAACAG+AGG | - | chr1_3:30506285-30506304 | None:intergenic | 45.0% |
| AAGGAATGGAACGGGTAAAC+CGG | - | chr1_3:30506301-30506320 | None:intergenic | 45.0% | |
| GAAATGCGAAGGAATGGAAC+GGG | - | chr1_3:30506309-30506328 | None:intergenic | 45.0% | |
| AGGGTTGAAATGCGAAGGAA+TGG | - | chr1_3:30506315-30506334 | None:intergenic | 45.0% | |
| AGGAAAGGGTTGAAATGCGA+AGG | - | chr1_3:30506320-30506339 | None:intergenic | 45.0% | |
| ! | TTGGTGTCTCTGTGTCAGTT+CGG | + | chr1_3:30506659-30506678 | Msa0114100:intron | 45.0% |
| GCAGCTGATAGACCATACAA+AGG | + | chr1_3:30506790-30506809 | Msa0114100:CDS | 45.0% | |
| GACCATACAAAGGCCCTTAA+CGG | + | chr1_3:30506800-30506819 | Msa0114100:CDS | 45.0% | |
| CTTGTAAGTACGGCCGTTAA+GGG | - | chr1_3:30506816-30506835 | None:intergenic | 45.0% | |
| ACTTGTAAGTACGGCCGTTA+AGG | - | chr1_3:30506817-30506836 | None:intergenic | 45.0% | |
| TAACGGCCGTACTTACAAGT+TGG | + | chr1_3:30506817-30506836 | Msa0114100:CDS | 45.0% | |
| !! | CAAGTTGGTCACTCAACTTC+TGG | + | chr1_3:30506832-30506851 | Msa0114100:CDS | 45.0% |
| !! | CAACTTCTGGAACAAGCACA+AGG | + | chr1_3:30506845-30506864 | Msa0114100:CDS | 45.0% |
| GCTCGTTAAACTGTCTAGGT+AGG | + | chr1_3:30506875-30506894 | Msa0114100:exon | 45.0% | |
| GTTAAACTGTCTAGGTAGGC+TGG | + | chr1_3:30506879-30506898 | Msa0114100:exon | 45.0% | |
| !! | AATAAATAATTAATTAATGT+TGG | + | chr1_3:30504476-30504495 | Msa0114100:intron | 5.0% |
| GTATTCCGCCATTCTTCGTC+TGG | - | chr1_3:30502636-30502655 | None:intergenic | 50.0% | |
| !! | TCGAGATTTGGTGCCATTCG+CGG | - | chr1_3:30502668-30502687 | None:intergenic | 50.0% |
| ! | ACGAGATGACGGTCGAGATT+TGG | - | chr1_3:30502680-30502699 | None:intergenic | 50.0% |
| TCAGAATCCTGCTGCTGTTC+AGG | + | chr1_3:30502931-30502950 | Msa0114100:CDS | 50.0% | |
| CTCAATTCCTGAACAGCAGC+AGG | - | chr1_3:30502941-30502960 | None:intergenic | 50.0% | |
| GGAAGAGCTCAATCGCTTGA+AGG | + | chr1_3:30504375-30504394 | Msa0114100:CDS | 50.0% | |
| ! | ACAAATTAAGGCATCCGGGG+GGG | - | chr1_3:30504667-30504686 | None:intergenic | 50.0% |
| !! | AAAGGTGTGGAGCACTGGTT+TGG | - | chr1_3:30504861-30504880 | None:intergenic | 50.0% |
| ! | GCCAAGTATCGCAAAAGGTG+TGG | - | chr1_3:30504874-30504893 | None:intergenic | 50.0% |
| ! | CTGTGGCCAAGTATCGCAAA+AGG | - | chr1_3:30504879-30504898 | None:intergenic | 50.0% |
| GGACCCCATTACTGAGTTTC+TGG | + | chr1_3:30504978-30504997 | Msa0114100:CDS | 50.0% | |
| !! | TGGCATCAAGCTTTGAGCCA+CGG | - | chr1_3:30505707-30505726 | None:intergenic | 50.0% |
| !! | CGAATTTGGGTTTTGGTCCC+TGG | + | chr1_3:30505986-30506005 | Msa0114100:intron | 50.0% |
| GACCCACTTTCTTGCTGATC+TGG | + | chr1_3:30506064-30506083 | Msa0114100:intron | 50.0% | |
| CTGCCAGATCAGCAAGAAAG+TGG | - | chr1_3:30506070-30506089 | None:intergenic | 50.0% | |
| AGGAATGGAACGGGTAAACC+GGG | - | chr1_3:30506300-30506319 | None:intergenic | 50.0% | |
| !! | CGAATTTGGGTTTTGGTCCC+TGG | - | chr1_3:30505986-30506005 | None:intergenic | 50.0% |
| GTCTATCAGCTGCTCATACC+TGG | - | chr1_3:30506783-30506802 | None:intergenic | 50.0% | |
| ! | TCTGGAACAAGCACAAGGTC+AGG | + | chr1_3:30506850-30506869 | Msa0114100:CDS | 50.0% |
| GGCAGCTCGTTAAACTGTCT+AGG | + | chr1_3:30506871-30506890 | Msa0114100:exon | 50.0% | |
| CGGGTGTCCATACTAGTTCA+TGG | - | chr1_3:30507091-30507110 | None:intergenic | 50.0% | |
| AGATGCTGCTGCACCTCTTG+TGG | + | chr1_3:30502901-30502920 | Msa0114100:CDS | 55.0% | |
| ! | GATTGGTCCTGCGCAGATAG+AGG | + | chr1_3:30504186-30504205 | Msa0114100:intron | 55.0% |
| ! | TCGCAAAAGGTGTGGAGCAC+TGG | - | chr1_3:30504866-30504885 | None:intergenic | 55.0% |
| GGCCGTTAAGGGCCTTTGTA+TGG | - | chr1_3:30506805-30506824 | None:intergenic | 55.0% | |
| CTAGGTAGGCTGGTAGACTG+AGG | + | chr1_3:30506889-30506908 | Msa0114100:three_prime_UTR | 55.0% | |
| ATTCTAGCCCGTGCTTCGCA+CGG | - | chr1_3:30507111-30507130 | None:intergenic | 55.0% | |
| ! | CGTCTGGTTTCAGATGCGGC+TGG | - | chr1_3:30502620-30502639 | None:intergenic | 60.0% |
| ! | TTAAGGCATCCGGGGGGGAA+AGG | - | chr1_3:30504662-30504681 | None:intergenic | 60.0% |
| ATGGACACCCGTGCGAAGCA+CGG | + | chr1_3:30507100-30507119 | Msa0114100:three_prime_UTR | 60.0% | |
| TTCTAGCCCGTGCTTCGCAC+GGG | - | chr1_3:30507110-30507129 | None:intergenic | 60.0% | |
| TGGACACCCGTGCGAAGCAC+GGG | + | chr1_3:30507101-30507120 | Msa0114100:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 30502451 | 30507214 | 30502451 | ID=Msa0114100;Name=Msa0114100 |
| chr1_3 | mRNA | 30502451 | 30507214 | 30502451 | ID=Msa0114100-mRNA-1;Parent=Msa0114100;Name=Msa0114100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=193|1|1|1|1|1|7|331|437 |
| chr1_3 | exon | 30502451 | 30503006 | 30502451 | ID=Msa0114100-mRNA-1:exon:10109;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30504187 | 30504414 | 30504187 | ID=Msa0114100-mRNA-1:exon:10110;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30504514 | 30504635 | 30504514 | ID=Msa0114100-mRNA-1:exon:10111;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30504843 | 30505062 | 30504843 | ID=Msa0114100-mRNA-1:exon:10112;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30505218 | 30505360 | 30505218 | ID=Msa0114100-mRNA-1:exon:10113;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30505641 | 30505778 | 30505641 | ID=Msa0114100-mRNA-1:exon:10114;Parent=Msa0114100-mRNA-1 |
| chr1_3 | exon | 30506784 | 30507214 | 30506784 | ID=Msa0114100-mRNA-1:exon:10115;Parent=Msa0114100-mRNA-1 |
| chr1_3 | five_prime_UTR | 30502451 | 30502643 | 30502451 | ID=Msa0114100-mRNA-1:five_prime_utr;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30502644 | 30503006 | 30502644 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30504187 | 30504414 | 30504187 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30504514 | 30504635 | 30504514 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30504843 | 30505062 | 30504843 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30505218 | 30505360 | 30505218 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30505641 | 30505778 | 30505641 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | CDS | 30506784 | 30506883 | 30506784 | ID=Msa0114100-mRNA-1:cds;Parent=Msa0114100-mRNA-1 |
| chr1_3 | three_prime_UTR | 30506884 | 30507214 | 30506884 | ID=Msa0114100-mRNA-1:three_prime_utr;Parent=Msa0114100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
