Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012770 | XP_013447916.1 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012770 | sp|P0DKK7|RL7A2_ORYSJ | 88.760 | 258 | 27 | 1 | 1 | 258 | 1 | 256 | 2.78e-168 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012770 | A0A072TYM4 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046830 | Msa1012770 | 0.810469 | 1.134819e-50 | -8.615850e-47 |
| Msa0114100 | Msa1012770 | 0.804423 | 2.176073e-49 | -8.615850e-47 |
| Msa0129660 | Msa1012770 | 0.813556 | 2.411232e-51 | -8.615850e-47 |
| Msa0195340 | Msa1012770 | 0.801926 | 7.149234e-49 | -8.615850e-47 |
| Msa0224110 | Msa1012770 | 0.802850 | 4.613694e-49 | -8.615850e-47 |
| Msa0382210 | Msa1012770 | 0.809524 | 1.813853e-50 | -8.615850e-47 |
| Msa0482200 | Msa1012770 | 0.812681 | 3.751377e-51 | -8.615850e-47 |
| Msa1012740 | Msa1012770 | 0.933894 | 9.347364e-96 | -8.615850e-47 |
| Msa1012770 | Msa1058660 | 0.817267 | 3.603847e-52 | -8.615850e-47 |
| Msa1012770 | Msa1094380 | 0.810464 | 1.137665e-50 | -8.615850e-47 |
| Msa1012770 | Msa1128120 | 0.818503 | 1.894327e-52 | -8.615850e-47 |
| Msa1012770 | Msa1225720 | 0.839248 | 1.775132e-57 | -8.615850e-47 |
| Msa1012770 | Msa1258390 | 0.840579 | 7.986109e-58 | -8.615850e-47 |
| Msa1012770 | Msa1444240 | 0.803127 | 4.043665e-49 | -8.615850e-47 |
| Msa0264010 | Msa1012770 | 0.822070 | 2.883176e-53 | -8.615850e-47 |
| Msa0289580 | Msa1012770 | 0.802668 | 5.029070e-49 | -8.615850e-47 |
| Msa0297610 | Msa1012770 | 0.803940 | 2.742015e-49 | -8.615850e-47 |
| Msa0327300 | Msa1012770 | 0.826464 | 2.673662e-54 | -8.615850e-47 |
| Msa0342850 | Msa1012770 | 0.833856 | 4.192890e-56 | -8.615850e-47 |
| Msa0485510 | Msa1012770 | 0.855521 | 5.965311e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012770 | MtrunA17_Chr7g0224411 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 518 |
| Msa1012770 | MtrunA17_Chr4g0037721 | 92.636 | 258 | 18 | 1 | 1 | 258 | 1 | 257 | 2.94e-176 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012770 | AT3G62870.1 | 82.558 | 258 | 41 | 1 | 1 | 258 | 1 | 254 | 2.49e-159 | 442 |
| Msa1012770 | AT2G47610.1 | 86.307 | 241 | 33 | 0 | 18 | 258 | 15 | 255 | 7.00e-158 | 439 |
Find 87 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7_1:+18191859 | None:intergenic |
| GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7_1:-18191909 | Msa1012770:CDS |
| GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7_1:-18194021 | Msa1012770:CDS |
| AGTCCATATTTCACATTAAT+AGG | 0.274436 | 7_1:+18192502 | None:intergenic |
| GTTTGTGAGGTGAACTTAAA+AGG | 0.276354 | 7_1:+18194297 | None:intergenic |
| AAGCCTATTAATGTGAAATA+TGG | 0.287894 | 7_1:-18192505 | Msa1012770:CDS |
| AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7_1:+18193979 | None:intergenic |
| CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7_1:-18192099 | Msa1012770:CDS |
| AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7_1:-18194020 | Msa1012770:CDS |
| AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7_1:-18191908 | Msa1012770:CDS |
| TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7_1:-18192251 | Msa1012770:CDS |
| AGCCAGACAACGAGCTCAAT+TGG | 0.346442 | 7_1:+18192313 | None:intergenic |
| CTCTGAATCTGCACCGTCTT+AGG | 0.355241 | 7_1:+18193946 | None:intergenic |
| CCAAAGCAAATGGAATTTCT+AGG | 0.364165 | 7_1:+18191818 | None:intergenic |
| TTCTTCTTCGCTGCTGCAAC+TGG | 0.368855 | 7_1:+18194075 | None:intergenic |
| CCTAGAAATTCCATTTGCTT+TGG | 0.376226 | 7_1:-18191818 | Msa1012770:three_prime_UTR |
| TCTGGTTTGAATTACCTTGA+TGG | 0.376236 | 7_1:+18192055 | None:intergenic |
| AGCTTGTAATTCACAATCAA+TGG | 0.379531 | 7_1:-18191705 | Msa1012770:three_prime_UTR |
| TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7_1:+18193875 | None:intergenic |
| GTCAAGGGCAAAGCACGTTT+GGG | 0.408522 | 7_1:-18192250 | Msa1012770:CDS |
| ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7_1:-18191934 | Msa1012770:CDS |
| ACCCAATTGAGCTCGTTGTC+TGG | 0.417238 | 7_1:-18192315 | Msa1012770:CDS |
| TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7_1:-18192290 | Msa1012770:CDS |
| TTTGCCCTCAGATTCGGCTT+GGG | 0.426690 | 7_1:+18192543 | None:intergenic |
| ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7_1:-18193969 | Msa1012770:CDS |
| TTTGTGAGGTGAACTTAAAA+GGG | 0.434212 | 7_1:+18194298 | None:intergenic |
| CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7_1:+18194012 | None:intergenic |
| AGAAGGAACGTCTCTTGAAA+AGG | 0.447060 | 7_1:-18192567 | Msa1012770:CDS |
| TTGATGAAAGAGGCGGAAGA+AGG | 0.450631 | 7_1:+18194244 | None:intergenic |
| CAGTACCTGCTCAATAAGAT+AGG | 0.450777 | 7_1:+18192468 | None:intergenic |
| TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7_1:+18192289 | None:intergenic |
| TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7_1:-18191942 | Msa1012770:CDS |
| TCATCTTTGAGCAGCTTCCT+TGG | 0.461810 | 7_1:+18191841 | None:intergenic |
| TGTCCTCAGGCCTGTACTTG+AGG | 0.467651 | 7_1:+18192599 | None:intergenic |
| AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7_1:-18191917 | Msa1012770:CDS |
| GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7_1:+18193911 | None:intergenic |
| GAATTACCTTGATGGCCTCT+AGG | 0.480564 | 7_1:+18192063 | None:intergenic |
| ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7_1:+18192614 | None:intergenic |
| CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7_1:+18193982 | None:intergenic |
| GCCAGACAACGAGCTCAATT+GGG | 0.496078 | 7_1:+18192314 | None:intergenic |
| TATACTAAGACAGCAAATGA+AGG | 0.505062 | 7_1:+18191535 | None:intergenic |
| TCAAGATGCTCCTCAAGTAC+AGG | 0.506258 | 7_1:-18192609 | Msa1012770:CDS |
| GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7_1:-18193914 | Msa1012770:CDS |
| TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7_1:-18191924 | Msa1012770:CDS |
| GAAGGAACGTCTCTTGAAAA+GGG | 0.519164 | 7_1:-18192566 | Msa1012770:CDS |
| CAGAATCCTAGAGGCCATCA+AGG | 0.522029 | 7_1:-18192069 | Msa1012770:intron |
| TAAAAGGGTTATCAAAATGT+GGG | 0.530346 | 7_1:+18194313 | None:intergenic |
| TTAAAAGGGTTATCAAAATG+TGG | 0.533409 | 7_1:+18194312 | None:intergenic |
| TGTTACCTATCTTATTGAGC+AGG | 0.541671 | 7_1:-18192473 | Msa1012770:intron |
| TTACAAGCTAACAGAATGAA+AGG | 0.542137 | 7_1:+18191719 | None:intergenic |
| TGCAGATTCAGAGGAAGAAG+AGG | 0.543903 | 7_1:-18193936 | Msa1012770:CDS |
| GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7_1:+18192118 | None:intergenic |
| CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7_1:-18193981 | Msa1012770:CDS |
| TTGATGTTGTTTGATGAAAG+AGG | 0.546296 | 7_1:+18194234 | None:intergenic |
| GAAGAATACAGCACTGAAAG+TGG | 0.550599 | 7_1:-18194058 | Msa1012770:CDS |
| TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7_1:-18191925 | Msa1012770:CDS |
| TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7_1:+18192261 | None:intergenic |
| TGAGGACAAAGCTGAAAAGA+AGG | 0.558356 | 7_1:-18192584 | Msa1012770:CDS |
| AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7_1:-18192266 | Msa1012770:CDS |
| AAGGGCCCAAGCCGAATCTG+AGG | 0.570757 | 7_1:-18192548 | Msa1012770:CDS |
| TTAGTGAACTGGTTAAGAGC+AGG | 0.576262 | 7_1:+18193886 | None:intergenic |
| AAATAAATCAGCAAAAGTGC+AGG | 0.578724 | 7_1:+18191674 | None:intergenic |
| TTCACCTCACAAACACCACT+AGG | 0.581666 | 7_1:-18194288 | Msa1012770:five_prime_UTR |
| TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7_1:+18192262 | None:intergenic |
| CTAAGACGGTGCAGATTCAG+AGG | 0.603377 | 7_1:-18193945 | Msa1012770:CDS |
| CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7_1:-18194012 | Msa1012770:CDS |
| AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7_1:-18194015 | Msa1012770:CDS |
| GTTTGTGAAATGGCCTAAGA+CGG | 0.612460 | 7_1:-18193959 | Msa1012770:CDS |
| ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7_1:-18192265 | Msa1012770:CDS |
| TCACCTCACAAACACCACTA+GGG | 0.622915 | 7_1:-18194287 | Msa1012770:five_prime_UTR |
| CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7_1:-18191858 | Msa1012770:CDS |
| GAAGAAGGAGAAATGTGCAA+TGG | 0.626196 | 7_1:+18194259 | None:intergenic |
| GTGAACTGGTTAAGAGCAGG+TGG | 0.627497 | 7_1:+18193889 | None:intergenic |
| TCAAACAACATCAACAACAA+TGG | 0.632516 | 7_1:-18194225 | Msa1012770:intron |
| AGGGCCCAAGCCGAATCTGA+GGG | 0.638813 | 7_1:-18192547 | Msa1012770:CDS |
| AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7_1:-18193921 | Msa1012770:CDS |
| TATTTACAGGCACCAAAGCG+CGG | 0.650226 | 7_1:-18194108 | Msa1012770:intron |
| GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7_1:-18191920 | Msa1012770:CDS |
| GCTCAATAAGATAGGTAACA+TGG | 0.658823 | 7_1:+18192476 | None:intergenic |
| TTACAGGCACCAAAGCGCGG+TGG | 0.663704 | 7_1:-18194105 | Msa1012770:intron |
| GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7_1:-18191923 | Msa1012770:CDS |
| AAACCCTAGTGGTGTTTGTG+AGG | 0.666182 | 7_1:+18194284 | None:intergenic |
| CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7_1:-18191882 | Msa1012770:CDS |
| GGAATTCAGCAGAATCCTAG+AGG | 0.681733 | 7_1:-18192078 | Msa1012770:CDS |
| GCTCCTCAAGTACAGGCCTG+AGG | 0.691529 | 7_1:-18192602 | Msa1012770:CDS |
| ATGTTGTTTGATGAAAGAGG+CGG | 0.782823 | 7_1:+18194237 | None:intergenic |
| GTGCAATGGAGAAACCCTAG+TGG | 0.799404 | 7_1:+18194273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAAATTTGTGTTTAAT+TGG | - | chr7_1:18192127-18192146 | Msa1012770:CDS | 10.0% |
| !!! | TTTAATTGATTTAATTGATA+TGG | - | chr7_1:18192443-18192462 | Msa1012770:intron | 10.0% |
| !!! | TTAATTGATTTAATTGATAT+GGG | - | chr7_1:18192444-18192463 | Msa1012770:intron | 10.0% |
| !!! | TTTTAGATTTGGTTTTAATT+TGG | - | chr7_1:18192068-18192087 | Msa1012770:intron | 15.0% |
| !! | ATGTTTGATCAATAAAATTT+AGG | - | chr7_1:18192188-18192207 | Msa1012770:intron | 15.0% |
| !!! | GGTTATTATTGTTTAAAATA+AGG | - | chr7_1:18192271-18192290 | Msa1012770:CDS | 15.0% |
| !!! | TTTTGTTCTTTTTTAAGATA+AGG | - | chr7_1:18192663-18192682 | Msa1012770:intron | 15.0% |
| !!! | TTTGTTCTTTTTTAAGATAA+GGG | - | chr7_1:18192664-18192683 | Msa1012770:intron | 15.0% |
| !! | ATTATTGAAATCATGATTAT+TGG | - | chr7_1:18193161-18193180 | Msa1012770:intron | 15.0% |
| !! | CGATTATCTTTATTATTTAC+AGG | - | chr7_1:18191743-18191762 | Msa1012770:three_prime_UTR | 20.0% |
| !! | TAGCTCATTTGTTTATAAAA+TGG | - | chr7_1:18192036-18192055 | Msa1012770:intron | 20.0% |
| !! | TTTATGTGTAATGCTTTAAT+GGG | - | chr7_1:18192093-18192112 | Msa1012770:CDS | 20.0% |
| !! | TGCTATTGTTATAGATTAAT+TGG | - | chr7_1:18192249-18192268 | Msa1012770:CDS | 20.0% |
| !! | GCTATTGTTATAGATTAATT+GGG | - | chr7_1:18192250-18192269 | Msa1012770:CDS | 20.0% |
| !! | TTAATGTGAAATGGTTTAAT+TGG | - | chr7_1:18192514-18192533 | Msa1012770:CDS | 20.0% |
| !! | TAATGTGAAATGGTTTAATT+GGG | - | chr7_1:18192515-18192534 | Msa1012770:CDS | 20.0% |
| !!! | GATGTTAGTTTAAATTGTTT+TGG | - | chr7_1:18192960-18192979 | Msa1012770:intron | 20.0% |
| !! | TACTTGTTCATATAAACAAA+AGG | + | chr7_1:18193424-18193443 | None:intergenic | 20.0% |
| !!! | TTTTTTACCTTCTATTTTTC+AGG | - | chr7_1:18193898-18193917 | Msa1012770:CDS | 20.0% |
| !!! | TTGTTATTGTCCTATATTTT+TGG | - | chr7_1:18194089-18194108 | Msa1012770:CDS | 20.0% |
| !!! | AGTTGTTTTAGACTTAAAAA+TGG | - | chr7_1:18194217-18194236 | Msa1012770:intron | 20.0% |
| ! | TAAAAGGGTTATCAAAATGT+GGG | + | chr7_1:18191554-18191573 | None:intergenic | 25.0% |
| ! | TTAAAAGGGTTATCAAAATG+TGG | + | chr7_1:18191555-18191574 | None:intergenic | 25.0% |
| !!! | GGTGATTATGTTTTTAGATT+TGG | - | chr7_1:18192057-18192076 | Msa1012770:intron | 25.0% |
| ! | GTTTATGTGTAATGCTTTAA+TGG | - | chr7_1:18192092-18192111 | Msa1012770:CDS | 25.0% |
| ! | ATTTGTGTTTAATTGGCATA+TGG | - | chr7_1:18192134-18192153 | Msa1012770:CDS | 25.0% |
| ! | ATGGTATTTGATATGTGTAA+TGG | - | chr7_1:18192399-18192418 | Msa1012770:intron | 25.0% |
| ! | TGGTATTTGATATGTGTAAT+GGG | - | chr7_1:18192400-18192419 | Msa1012770:intron | 25.0% |
| ! | AAGTTTCATTTCTTTGTTCT+GGG | - | chr7_1:18192617-18192636 | Msa1012770:CDS | 25.0% |
| !!! | TGTTTATTTTGTCTATTGCT+TGG | - | chr7_1:18192741-18192760 | Msa1012770:intron | 25.0% |
| !!! | TGTTTATTTTGTCTATTGCT+TGG | - | chr7_1:18192741-18192760 | Msa1012770:intron | 25.0% |
| !!! | TGTTTATTTTATCGATTGCA+TGG | - | chr7_1:18192887-18192906 | Msa1012770:intron | 25.0% |
| ! | GGAAATAGTATATGATAGTT+TGG | - | chr7_1:18192908-18192927 | Msa1012770:intron | 25.0% |
| !!! | TAAATTGTTTTGGAACATGT+TGG | - | chr7_1:18192970-18192989 | Msa1012770:intron | 25.0% |
| ! | TACCAATCAAAAACAAAAGA+CGG | + | chr7_1:18193048-18193067 | None:intergenic | 25.0% |
| ! | ATCCAAAAATCACAAAACAA+TGG | + | chr7_1:18193143-18193162 | None:intergenic | 25.0% |
| ! | AAGCCTATTAATGTGAAATA+TGG | - | chr7_1:18193359-18193378 | Msa1012770:intron | 25.0% |
| ! | AGTCCATATTTCACATTAAT+AGG | + | chr7_1:18193365-18193384 | None:intergenic | 25.0% |
| ! | TTATTACTAACTGTAACTTG+TGG | - | chr7_1:18193480-18193499 | Msa1012770:intron | 25.0% |
| ! | GTCACAAATTATAAATTCAC+AGG | + | chr7_1:18193678-18193697 | None:intergenic | 25.0% |
| ! | AAAATGAACAATCAAATCTC+TGG | + | chr7_1:18193830-18193849 | None:intergenic | 25.0% |
| ! | AGGTAAAAAACGAACATAAA+AGG | + | chr7_1:18193888-18193907 | None:intergenic | 25.0% |
| ! | TAACTTTAACGACAAATTTG+AGG | - | chr7_1:18193922-18193941 | Msa1012770:CDS | 25.0% |
| ! | CTAAAAATAACCAAAGCAAA+TGG | + | chr7_1:18194059-18194078 | None:intergenic | 25.0% |
| !!! | TGGTTATTTTTAGAACTTTG+AGG | - | chr7_1:18194066-18194085 | Msa1012770:CDS | 25.0% |
| !!! | TTATTGTCCTATATTTTTGG+TGG | - | chr7_1:18194092-18194111 | Msa1012770:CDS | 25.0% |
| TTTGTGAGGTGAACTTAAAA+GGG | + | chr7_1:18191569-18191588 | None:intergenic | 30.0% | |
| ! | TTGATGTTGTTTGATGAAAG+AGG | + | chr7_1:18191633-18191652 | None:intergenic | 30.0% |
| TCAAACAACATCAACAACAA+TGG | - | chr7_1:18191639-18191658 | Msa1012770:three_prime_UTR | 30.0% | |
| ATTTGACAAGGTTTGTGAAA+TGG | - | chr7_1:18191895-18191914 | Msa1012770:CDS | 30.0% | |
| AAGACACTCGATAAAAATCT+CGG | - | chr7_1:18191999-18192018 | Msa1012770:intron | 30.0% | |
| TGTTTATTATGTTGAGTGCT+TGG | - | chr7_1:18192374-18192393 | Msa1012770:intron | 30.0% | |
| GATTTCGTGTTAATGTGAAA+TGG | - | chr7_1:18192505-18192524 | Msa1012770:CDS | 30.0% | |
| ATTGGGTGGTTGTTAAAATT+TGG | - | chr7_1:18192532-18192551 | Msa1012770:CDS | 30.0% | |
| TTGGGTGGTTGTTAAAATTT+GGG | - | chr7_1:18192533-18192552 | Msa1012770:CDS | 30.0% | |
| GAAGTTTCATTTCTTTGTTC+TGG | - | chr7_1:18192616-18192635 | Msa1012770:CDS | 30.0% | |
| TTGGATAGTATGTGATAGTT+TGG | - | chr7_1:18192760-18192779 | Msa1012770:intron | 30.0% | |
| GTATATGATAGTTTGGACTT+TGG | - | chr7_1:18192915-18192934 | Msa1012770:intron | 30.0% | |
| ATCACAAATACGATAGTCTT+CGG | + | chr7_1:18193023-18193042 | None:intergenic | 30.0% | |
| ACCAATCAAAAACAAAAGAC+GGG | + | chr7_1:18193047-18193066 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTATGACTATTGA+AGG | - | chr7_1:18193072-18193091 | Msa1012770:intron | 30.0% |
| !! | GACCATTGTTTTGTGATTTT+TGG | - | chr7_1:18193138-18193157 | Msa1012770:intron | 30.0% |
| ATTCACAGGTGAAAATTCTA+TGG | + | chr7_1:18193664-18193683 | None:intergenic | 30.0% | |
| ! | CATTTTGTCTTCATTCTTGA+CGG | + | chr7_1:18193767-18193786 | None:intergenic | 30.0% |
| ! | AAGTTAGCCTGAAAAATAGA+AGG | + | chr7_1:18193908-18193927 | None:intergenic | 30.0% |
| AAAACCTCCACCAAAAATAT+AGG | + | chr7_1:18194102-18194121 | None:intergenic | 30.0% | |
| TTACAAGCTAACAGAATGAA+AGG | + | chr7_1:18194148-18194167 | None:intergenic | 30.0% | |
| AGCTTGTAATTCACAATCAA+TGG | - | chr7_1:18194159-18194178 | Msa1012770:intron | 30.0% | |
| ! | AAATAAATCAGCAAAAGTGC+AGG | + | chr7_1:18194193-18194212 | None:intergenic | 30.0% |
| GTTTGTGAGGTGAACTTAAA+AGG | + | chr7_1:18191570-18191589 | None:intergenic | 35.0% | |
| ! | ATGTTGTTTGATGAAAGAGG+CGG | + | chr7_1:18191630-18191649 | None:intergenic | 35.0% |
| AACCTTGTCAAATCTCTCTT+TGG | + | chr7_1:18191888-18191907 | None:intergenic | 35.0% | |
| ! | ATTGGCATATGGTCTTAGTT+TGG | - | chr7_1:18192145-18192164 | Msa1012770:intron | 35.0% |
| TTATGTTGAGTGCTTGGAAA+TGG | - | chr7_1:18192380-18192399 | Msa1012770:intron | 35.0% | |
| TGTGAAATGGTTTAATTGGG+TGG | - | chr7_1:18192518-18192537 | Msa1012770:CDS | 35.0% | |
| !! | TAGTTTGGACTTTGGAGTAA+TGG | - | chr7_1:18192923-18192942 | Msa1012770:intron | 35.0% |
| TGACTATTGAAGGTTCTGTA+TGG | - | chr7_1:18193082-18193101 | Msa1012770:intron | 35.0% | |
| GCTCAATAAGATAGGTAACA+TGG | + | chr7_1:18193391-18193410 | None:intergenic | 35.0% | |
| TGTTACCTATCTTATTGAGC+AGG | - | chr7_1:18193391-18193410 | Msa1012770:intron | 35.0% | |
| CGTCAAGAATGAAGACAAAA+TGG | - | chr7_1:18193765-18193784 | Msa1012770:intron | 35.0% | |
| ! | TCTGGTTTGAATTACCTTGA+TGG | + | chr7_1:18193812-18193831 | None:intergenic | 35.0% |
| ACGACAAATTTGAGGAAAAC+AGG | - | chr7_1:18193930-18193949 | Msa1012770:CDS | 35.0% | |
| !!! | CTTTGTTTTCGCTTGAGATT+TGG | + | chr7_1:18193984-18194003 | None:intergenic | 35.0% |
| CAAATCTCAAGCGAAAACAA+AGG | - | chr7_1:18193982-18194001 | Msa1012770:CDS | 35.0% | |
| CCAAAGCAAATGGAATTTCT+AGG | + | chr7_1:18194049-18194068 | None:intergenic | 35.0% | |
| CCTAGAAATTCCATTTGCTT+TGG | - | chr7_1:18194046-18194065 | Msa1012770:CDS | 35.0% | |
| !!! | TTGTCCTATATTTTTGGTGG+AGG | - | chr7_1:18194095-18194114 | Msa1012770:CDS | 35.0% |
| GAAGAAGGAGAAATGTGCAA+TGG | + | chr7_1:18191608-18191627 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+GGG | + | chr7_1:18191668-18191687 | None:intergenic | 40.0% | |
| ! | GAAGAATACAGCACTGAAAG+TGG | - | chr7_1:18191806-18191825 | Msa1012770:three_prime_UTR | 40.0% |
| !!! | TGAACCCACTTTTTGAGAAG+AGG | - | chr7_1:18191829-18191848 | Msa1012770:exon | 40.0% |
| TTGGCCTCTTCTCAAAAAGT+GGG | + | chr7_1:18191836-18191855 | None:intergenic | 40.0% | |
| TTTGGCCTCTTCTCAAAAAG+TGG | + | chr7_1:18191837-18191856 | None:intergenic | 40.0% | |
| AGAAGAGGCCAAAGCAATTT+GGG | - | chr7_1:18191844-18191863 | Msa1012770:CDS | 40.0% | |
| CTTGTCAAATCTCTCTTTGG+TGG | + | chr7_1:18191885-18191904 | None:intergenic | 40.0% | |
| CACCAAAGAGAGATTTGACA+AGG | - | chr7_1:18191883-18191902 | Msa1012770:CDS | 40.0% | |
| GTTTGTGAAATGGCCTAAGA+CGG | - | chr7_1:18191905-18191924 | Msa1012770:CDS | 40.0% | |
| TTAGTGAACTGGTTAAGAGC+AGG | + | chr7_1:18191981-18192000 | None:intergenic | 40.0% | |
| TATCGAGTGTCTTAGTGAAC+TGG | + | chr7_1:18191992-18192011 | None:intergenic | 40.0% | |
| !! | TTGGACTTTGGAGTAATGGT+AGG | - | chr7_1:18192927-18192946 | Msa1012770:intron | 40.0% |
| !!! | GCCCGTCTTTTGTTTTTGAT+TGG | - | chr7_1:18193043-18193062 | Msa1012770:intron | 40.0% |
| !! | ACTTGAGGAGCATCTTGAAA+AGG | + | chr7_1:18193253-18193272 | None:intergenic | 40.0% |
| !! | TTCTTTTCAGCTTTGTCCTC+AGG | + | chr7_1:18193281-18193300 | None:intergenic | 40.0% |
| TGAGGACAAAGCTGAAAAGA+AGG | - | chr7_1:18193280-18193299 | Msa1012770:intron | 40.0% | |
| AGAAGGAACGTCTCTTGAAA+AGG | - | chr7_1:18193297-18193316 | Msa1012770:intron | 40.0% | |
| GAAGGAACGTCTCTTGAAAA+GGG | - | chr7_1:18193298-18193317 | Msa1012770:intron | 40.0% | |
| CAGTACCTGCTCAATAAGAT+AGG | + | chr7_1:18193399-18193418 | None:intergenic | 40.0% | |
| AGAGTACGAGTATGAGAGTA+TGG | + | chr7_1:18193448-18193467 | None:intergenic | 40.0% | |
| !!! | CTTGTGGCTTTTTCAGAACA+AGG | - | chr7_1:18193496-18193515 | Msa1012770:intron | 40.0% |
| AATTCCCTACTGCATTGTCA+AGG | - | chr7_1:18193598-18193617 | Msa1012770:intron | 40.0% | |
| ATTCCCTACTGCATTGTCAA+GGG | - | chr7_1:18193599-18193618 | Msa1012770:intron | 40.0% | |
| TTGAGGAAAACAGGAAGAAG+TGG | - | chr7_1:18193939-18193958 | Msa1012770:CDS | 40.0% | |
| TGAGGAAAACAGGAAGAAGT+GGG | - | chr7_1:18193940-18193959 | Msa1012770:CDS | 40.0% | |
| CTTGGCAATGAGTCTTTCTT+TGG | + | chr7_1:18194008-18194027 | None:intergenic | 40.0% | |
| CAAAGAAAGACTCATTGCCA+AGG | - | chr7_1:18194006-18194025 | Msa1012770:CDS | 40.0% | |
| TTCACCTCACAAACACCACT+AGG | - | chr7_1:18191576-18191595 | Msa1012770:three_prime_UTR | 45.0% | |
| TCACCTCACAAACACCACTA+GGG | - | chr7_1:18191577-18191596 | Msa1012770:three_prime_UTR | 45.0% | |
| AAACCCTAGTGGTGTTTGTG+AGG | + | chr7_1:18191583-18191602 | None:intergenic | 45.0% | |
| TTGATGAAAGAGGCGGAAGA+AGG | + | chr7_1:18191623-18191642 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGATT+AGG | + | chr7_1:18191669-18191688 | None:intergenic | 45.0% | |
| TATTTACAGGCACCAAAGCG+CGG | - | chr7_1:18191756-18191775 | Msa1012770:three_prime_UTR | 45.0% | |
| GAGAAGAGGCCAAAGCAATT+TGG | - | chr7_1:18191843-18191862 | Msa1012770:CDS | 45.0% | |
| ! | AGGCCAAAGCAATTTGGGAT+CGG | - | chr7_1:18191849-18191868 | Msa1012770:CDS | 45.0% |
| TGCAGATTCAGAGGAAGAAG+AGG | - | chr7_1:18191928-18191947 | Msa1012770:CDS | 45.0% | |
| AGAAGAGGATCCTTAAGCAG+AGG | - | chr7_1:18191943-18191962 | Msa1012770:CDS | 45.0% | |
| GATCCTTAAGCAGAGGTTGA+AGG | - | chr7_1:18191950-18191969 | Msa1012770:intron | 45.0% | |
| GAACCTTCAACCTCTGCTTA+AGG | + | chr7_1:18191956-18191975 | None:intergenic | 45.0% | |
| TCAAGATGCTCCTCAAGTAC+AGG | - | chr7_1:18193255-18193274 | Msa1012770:intron | 45.0% | |
| ! | GACTGTTTTGCCCTCAGATT+CGG | + | chr7_1:18193330-18193349 | None:intergenic | 45.0% |
| ! | TTTTCAGAACAAGGCACAGC+TGG | - | chr7_1:18193505-18193524 | Msa1012770:intron | 45.0% |
| ! | TCCAGCTTTGTGCAGAAAGA+TGG | - | chr7_1:18193574-18193593 | Msa1012770:intron | 45.0% |
| TCCATCTTTCTGCACAAAGC+TGG | + | chr7_1:18193578-18193597 | None:intergenic | 45.0% | |
| TTGCCCTTGACAATGCAGTA+GGG | + | chr7_1:18193605-18193624 | None:intergenic | 45.0% | |
| TTTGCCCTTGACAATGCAGT+AGG | + | chr7_1:18193606-18193625 | None:intergenic | 45.0% | |
| GACGGTTGTCAAGCACAAAA+CGG | + | chr7_1:18193749-18193768 | None:intergenic | 45.0% | |
| GGAATTCAGCAGAATCCTAG+AGG | - | chr7_1:18193786-18193805 | Msa1012770:intron | 45.0% | |
| ! | GAATTACCTTGATGGCCTCT+AGG | + | chr7_1:18193804-18193823 | None:intergenic | 45.0% |
| GAGGAAAACAGGAAGAAGTG+GGG | - | chr7_1:18193941-18193960 | Msa1012770:CDS | 45.0% | |
| ! | AAGTGGGGTGGTGGTATTAT+GGG | - | chr7_1:18193956-18193975 | Msa1012770:CDS | 45.0% |
| TCATCTTTGAGCAGCTTCCT+TGG | + | chr7_1:18194026-18194045 | None:intergenic | 45.0% | |
| GTGCAATGGAGAAACCCTAG+TGG | + | chr7_1:18191594-18191613 | None:intergenic | 50.0% | |
| TTCTTCTTCGCTGCTGCAAC+TGG | + | chr7_1:18191792-18191811 | None:intergenic | 50.0% | |
| CCACCGATCCCAAATTGCTT+TGG | + | chr7_1:18191855-18191874 | None:intergenic | 50.0% | |
| ! | CCAAAGCAATTTGGGATCGG+TGG | - | chr7_1:18191852-18191871 | Msa1012770:CDS | 50.0% |
| CTCTGAATCTGCACCGTCTT+AGG | + | chr7_1:18191921-18191940 | None:intergenic | 50.0% | |
| CTAAGACGGTGCAGATTCAG+AGG | - | chr7_1:18191919-18191938 | Msa1012770:CDS | 50.0% | |
| GTGAACTGGTTAAGAGCAGG+TGG | + | chr7_1:18191978-18191997 | None:intergenic | 50.0% | |
| TTTGCCCTCAGATTCGGCTT+GGG | + | chr7_1:18193324-18193343 | None:intergenic | 50.0% | |
| ! | TTTTGCCCTCAGATTCGGCT+TGG | + | chr7_1:18193325-18193344 | None:intergenic | 50.0% |
| ACCCAATTGAGCTCGTTGTC+TGG | - | chr7_1:18193549-18193568 | Msa1012770:intron | 50.0% | |
| GCCAGACAACGAGCTCAATT+GGG | + | chr7_1:18193553-18193572 | None:intergenic | 50.0% | |
| AGCCAGACAACGAGCTCAAT+TGG | + | chr7_1:18193554-18193573 | None:intergenic | 50.0% | |
| TGTCAAGGGCAAAGCACGTT+TGG | - | chr7_1:18193613-18193632 | Msa1012770:intron | 50.0% | |
| GTCAAGGGCAAAGCACGTTT+GGG | - | chr7_1:18193614-18193633 | Msa1012770:intron | 50.0% | |
| CAGAATCCTAGAGGCCATCA+AGG | - | chr7_1:18193795-18193814 | Msa1012770:intron | 50.0% | |
| GAAAACAGGAAGAAGTGGGG+TGG | - | chr7_1:18193944-18193963 | Msa1012770:CDS | 50.0% | |
| ! | GAAGTGGGGTGGTGGTATTA+TGG | - | chr7_1:18193955-18193974 | Msa1012770:CDS | 50.0% |
| TGTCCTCAGGCCTGTACTTG+AGG | + | chr7_1:18193268-18193287 | None:intergenic | 55.0% | |
| AACAGGAAGAAGTGGGGTGG+TGG | - | chr7_1:18193947-18193966 | Msa1012770:CDS | 55.0% | |
| TTACAGGCACCAAAGCGCGG+TGG | - | chr7_1:18191759-18191778 | Msa1012770:three_prime_UTR | 60.0% | |
| ! | GGTGCTTTTCCACCGCGCTT+TGG | + | chr7_1:18191771-18191790 | None:intergenic | 60.0% |
| GCTCCTCAAGTACAGGCCTG+AGG | - | chr7_1:18193262-18193281 | Msa1012770:intron | 60.0% | |
| AAGGGCCCAAGCCGAATCTG+AGG | - | chr7_1:18193316-18193335 | Msa1012770:intron | 60.0% | |
| AGGGCCCAAGCCGAATCTGA+GGG | - | chr7_1:18193317-18193336 | Msa1012770:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 18191545 | 18194341 | 18191545 | ID=Msa1012770;Name=Msa1012770 |
| chr7_1 | mRNA | 18191545 | 18194341 | 18191545 | ID=Msa1012770-mRNA-1;Parent=Msa1012770;Name=Msa1012770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=113|1|1|1|1|1|6|296|258 |
| chr7_1 | exon | 18191545 | 18191966 | 18191545 | ID=Msa1012770-mRNA-1:exon:4581;Parent=Msa1012770-mRNA-1 |
| chr7_1 | exon | 18192070 | 18192162 | 18192070 | ID=Msa1012770-mRNA-1:exon:4580;Parent=Msa1012770-mRNA-1 |
| chr7_1 | exon | 18192246 | 18192374 | 18192246 | ID=Msa1012770-mRNA-1:exon:4579;Parent=Msa1012770-mRNA-1 |
| chr7_1 | exon | 18192474 | 18192643 | 18192474 | ID=Msa1012770-mRNA-1:exon:4578;Parent=Msa1012770-mRNA-1 |
| chr7_1 | exon | 18193866 | 18194121 | 18193866 | ID=Msa1012770-mRNA-1:exon:4577;Parent=Msa1012770-mRNA-1 |
| chr7_1 | exon | 18194226 | 18194341 | 18194226 | ID=Msa1012770-mRNA-1:exon:4576;Parent=Msa1012770-mRNA-1 |
| chr7_1 | five_prime_UTR | 18194229 | 18194341 | 18194229 | ID=Msa1012770-mRNA-1:five_prime_utr;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18194226 | 18194228 | 18194226 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18193866 | 18194121 | 18193866 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18192474 | 18192643 | 18192474 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18192246 | 18192374 | 18192246 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18192070 | 18192162 | 18192070 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | CDS | 18191841 | 18191966 | 18191841 | ID=Msa1012770-mRNA-1:cds;Parent=Msa1012770-mRNA-1 |
| chr7_1 | three_prime_UTR | 18191545 | 18191840 | 18191545 | ID=Msa1012770-mRNA-1:three_prime_utr;Parent=Msa1012770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
