Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114110 | XP_013467475.1 | 96.486 | 370 | 13 | 0 | 1 | 370 | 1 | 370 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114110 | sp|A0A1P8BH03|IQD12_ARATH | 44.837 | 368 | 187 | 7 | 1 | 357 | 1 | 363 | 6.47e-70 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114110 | A0A072VI83 | 96.486 | 370 | 13 | 0 | 1 | 370 | 1 | 370 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114110 | Msa1024740 | 0.804275 | 2.335845e-49 | -8.615850e-47 |
| Msa0114110 | Msa1152510 | 0.811514 | 6.738410e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114110 | MtrunA17_Chr1g0172611 | 96.486 | 370 | 13 | 0 | 1 | 370 | 1 | 370 | 0.0 | 695 |
| Msa0114110 | MtrunA17_Chr4g0020671 | 33.420 | 386 | 218 | 11 | 3 | 367 | 4 | 371 | 8.27e-47 | 165 |
| Msa0114110 | MtrunA17_Chr7g0273861 | 32.824 | 393 | 210 | 13 | 1 | 354 | 1 | 378 | 5.22e-29 | 116 |
| Msa0114110 | MtrunA17_Chr6g0462191 | 32.303 | 356 | 162 | 10 | 50 | 346 | 56 | 391 | 5.76e-23 | 99.4 |
| Msa0114110 | MtrunA17_Chr1g0200161 | 34.014 | 147 | 87 | 3 | 98 | 241 | 134 | 273 | 7.27e-19 | 87.8 |
| Msa0114110 | MtrunA17_Chr3g0126901 | 29.008 | 393 | 223 | 13 | 3 | 360 | 4 | 375 | 2.52e-16 | 80.1 |
| Msa0114110 | MtrunA17_Chr4g0045641 | 34.752 | 141 | 81 | 3 | 106 | 240 | 147 | 282 | 3.33e-16 | 80.1 |
| Msa0114110 | MtrunA17_Chr1g0203711 | 30.657 | 411 | 223 | 13 | 8 | 368 | 8 | 406 | 5.24e-16 | 79.0 |
| Msa0114110 | MtrunA17_Chr1g0181581 | 35.766 | 137 | 80 | 1 | 100 | 236 | 111 | 239 | 6.33e-16 | 79.0 |
| Msa0114110 | MtrunA17_Chr1g0204901 | 46.939 | 147 | 61 | 4 | 16 | 151 | 42 | 182 | 1.91e-15 | 77.4 |
| Msa0114110 | MtrunA17_Chr4g0057321 | 26.552 | 290 | 167 | 10 | 107 | 355 | 90 | 374 | 1.15e-14 | 75.1 |
| Msa0114110 | MtrunA17_Chr7g0263731 | 31.557 | 244 | 147 | 7 | 1 | 236 | 1 | 232 | 3.06e-14 | 73.9 |
| Msa0114110 | MtrunA17_Chr2g0330921 | 28.826 | 281 | 164 | 12 | 82 | 352 | 75 | 329 | 4.16e-14 | 72.8 |
| Msa0114110 | MtrunA17_Chr8g0340761 | 31.217 | 378 | 182 | 17 | 17 | 352 | 30 | 371 | 6.90e-14 | 72.4 |
| Msa0114110 | MtrunA17_Chr8g0389781 | 27.758 | 281 | 156 | 9 | 99 | 352 | 120 | 380 | 6.55e-13 | 69.7 |
| Msa0114110 | MtrunA17_Chr1g0166431 | 40.594 | 101 | 42 | 3 | 51 | 151 | 81 | 163 | 1.47e-12 | 68.6 |
| Msa0114110 | MtrunA17_Chr7g0273951 | 29.600 | 250 | 139 | 8 | 107 | 352 | 108 | 324 | 2.91e-11 | 64.3 |
| Msa0114110 | MtrunA17_Chr4g0025441 | 36.567 | 134 | 70 | 2 | 107 | 236 | 98 | 220 | 3.87e-11 | 64.3 |
| Msa0114110 | MtrunA17_Chr8g0346021 | 27.236 | 246 | 147 | 5 | 37 | 269 | 71 | 297 | 5.63e-11 | 63.9 |
| Msa0114110 | MtrunA17_Chr3g0135851 | 32.847 | 137 | 81 | 2 | 107 | 241 | 93 | 220 | 9.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0114110 | AT5G03960.3 | 44.837 | 368 | 187 | 7 | 1 | 357 | 1 | 363 | 6.58e-71 | 227 |
| Msa0114110 | AT5G03960.2 | 44.837 | 368 | 187 | 7 | 1 | 357 | 1 | 363 | 6.58e-71 | 227 |
| Msa0114110 | AT5G03960.1 | 44.687 | 367 | 188 | 7 | 1 | 357 | 1 | 362 | 3.00e-70 | 226 |
| Msa0114110 | AT5G13460.1 | 32.353 | 374 | 208 | 12 | 1 | 352 | 1 | 351 | 1.58e-38 | 143 |
| Msa0114110 | AT5G03040.1 | 25.172 | 437 | 236 | 13 | 1 | 360 | 1 | 423 | 7.10e-25 | 105 |
| Msa0114110 | AT5G03040.3 | 25.172 | 437 | 236 | 13 | 1 | 360 | 1 | 423 | 7.10e-25 | 105 |
| Msa0114110 | AT5G03040.2 | 25.172 | 437 | 236 | 13 | 1 | 360 | 1 | 423 | 7.10e-25 | 105 |
| Msa0114110 | AT3G52290.1 | 38.800 | 250 | 117 | 8 | 5 | 238 | 3 | 232 | 1.41e-21 | 95.9 |
| Msa0114110 | AT4G10640.1 | 28.713 | 404 | 198 | 18 | 1 | 352 | 1 | 366 | 2.02e-21 | 95.5 |
| Msa0114110 | AT3G09710.1 | 27.817 | 284 | 173 | 9 | 1 | 271 | 1 | 265 | 1.10e-16 | 81.6 |
| Msa0114110 | AT3G09710.2 | 27.397 | 292 | 178 | 9 | 1 | 271 | 1 | 279 | 9.99e-16 | 78.6 |
| Msa0114110 | AT3G16490.1 | 30.028 | 353 | 208 | 9 | 10 | 352 | 7 | 330 | 1.70e-15 | 77.8 |
| Msa0114110 | AT3G59690.2 | 32.331 | 133 | 78 | 2 | 108 | 240 | 172 | 292 | 9.13e-15 | 75.9 |
| Msa0114110 | AT3G59690.1 | 32.331 | 133 | 78 | 2 | 108 | 240 | 172 | 292 | 9.13e-15 | 75.9 |
| Msa0114110 | AT3G49260.1 | 30.508 | 177 | 99 | 4 | 107 | 269 | 122 | 288 | 2.27e-13 | 71.6 |
| Msa0114110 | AT3G49260.4 | 30.508 | 177 | 99 | 4 | 107 | 269 | 122 | 288 | 2.27e-13 | 71.6 |
| Msa0114110 | AT3G49260.2 | 30.508 | 177 | 99 | 4 | 107 | 269 | 122 | 288 | 2.27e-13 | 71.6 |
| Msa0114110 | AT3G49260.3 | 31.461 | 178 | 97 | 5 | 107 | 269 | 122 | 289 | 2.36e-13 | 71.6 |
| Msa0114110 | AT2G43680.1 | 30.323 | 155 | 91 | 3 | 107 | 259 | 325 | 464 | 2.48e-13 | 71.6 |
| Msa0114110 | AT2G43680.4 | 30.323 | 155 | 91 | 3 | 107 | 259 | 324 | 463 | 2.50e-13 | 71.6 |
| Msa0114110 | AT2G43680.2 | 30.323 | 155 | 91 | 3 | 107 | 259 | 324 | 463 | 2.50e-13 | 71.6 |
| Msa0114110 | AT2G43680.3 | 30.323 | 155 | 91 | 3 | 107 | 259 | 324 | 463 | 2.50e-13 | 71.6 |
| Msa0114110 | AT2G43680.5 | 30.323 | 155 | 91 | 3 | 107 | 259 | 324 | 463 | 2.50e-13 | 71.6 |
| Msa0114110 | AT4G14750.1 | 52.381 | 63 | 30 | 0 | 106 | 168 | 106 | 168 | 6.86e-13 | 69.7 |
| Msa0114110 | AT2G26410.2 | 27.679 | 224 | 127 | 5 | 107 | 328 | 150 | 340 | 7.98e-13 | 70.1 |
| Msa0114110 | AT2G26410.1 | 27.679 | 224 | 127 | 5 | 107 | 328 | 150 | 340 | 7.98e-13 | 70.1 |
| Msa0114110 | AT1G72670.1 | 26.033 | 242 | 143 | 6 | 10 | 242 | 7 | 221 | 8.01e-13 | 69.7 |
| Msa0114110 | AT4G14750.2 | 52.381 | 63 | 30 | 0 | 106 | 168 | 165 | 227 | 8.24e-13 | 69.7 |
| Msa0114110 | AT3G49380.1 | 33.526 | 173 | 82 | 4 | 6 | 160 | 8 | 165 | 8.25e-13 | 69.3 |
| Msa0114110 | AT4G14750.3 | 52.381 | 63 | 30 | 0 | 106 | 168 | 165 | 227 | 8.37e-13 | 69.7 |
| Msa0114110 | AT4G00820.1 | 24.180 | 244 | 154 | 7 | 47 | 277 | 83 | 308 | 1.20e-12 | 69.3 |
| Msa0114110 | AT4G23060.1 | 29.391 | 279 | 143 | 11 | 106 | 352 | 168 | 424 | 4.45e-12 | 67.8 |
| Msa0114110 | AT2G26180.1 | 32.847 | 137 | 81 | 2 | 107 | 241 | 86 | 213 | 1.10e-11 | 66.2 |
| Msa0114110 | AT1G51960.1 | 28.968 | 252 | 135 | 9 | 107 | 353 | 102 | 314 | 1.45e-11 | 65.5 |
| Msa0114110 | AT1G76705.1 | 58.333 | 48 | 20 | 0 | 205 | 252 | 54 | 101 | 1.96e-11 | 62.0 |
| Msa0114110 | AT3G22190.3 | 34.043 | 141 | 66 | 3 | 107 | 236 | 90 | 214 | 2.59e-11 | 65.1 |
| Msa0114110 | AT3G22190.2 | 34.043 | 141 | 66 | 3 | 107 | 236 | 90 | 214 | 2.59e-11 | 65.1 |
| Msa0114110 | AT3G22190.4 | 34.043 | 141 | 66 | 3 | 107 | 236 | 90 | 214 | 2.59e-11 | 65.1 |
| Msa0114110 | AT3G22190.1 | 34.043 | 141 | 66 | 3 | 107 | 236 | 90 | 214 | 2.59e-11 | 65.1 |
| Msa0114110 | AT1G17480.1 | 30.216 | 139 | 79 | 1 | 104 | 242 | 93 | 213 | 3.42e-11 | 64.7 |
| Msa0114110 | AT1G01110.2 | 24.312 | 218 | 138 | 8 | 78 | 277 | 92 | 300 | 8.16e-11 | 63.9 |
Find 67 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCAAGTTCTTTGACTA+TGG | 0.222640 | 1_3:+30516856 | None:intergenic |
| TCTTTGCACAACAAAGAATT+TGG | 0.238161 | 1_3:-30516590 | Msa0114110:CDS |
| GGGAATATTCTTCAAAGTTC+TGG | 0.243133 | 1_3:+30517211 | None:intergenic |
| AACAGCTTCACCGCGAATTA+TGG | 0.256063 | 1_3:+30517247 | None:intergenic |
| AAAATCTTCACATGCATATA+TGG | 0.261916 | 1_3:-30516159 | Msa0114110:three_prime_UTR |
| TACATAAAGAAACGTGTAAC+TGG | 0.268640 | 1_3:-30516535 | Msa0114110:CDS |
| TTCATTTGTTTATATGAGTT+TGG | 0.305792 | 1_3:-30515984 | Msa0114110:three_prime_UTR |
| CAAAGATTCTTCCACCATTT+GGG | 0.313410 | 1_3:+30516607 | None:intergenic |
| GCAAAGATTCTTCCACCATT+TGG | 0.323693 | 1_3:+30516606 | None:intergenic |
| TCTGTTTGAAGCTGTAATTT+TGG | 0.326546 | 1_3:+30518054 | None:intergenic |
| CTCTTGCTTTCTTAACCATA+TGG | 0.346802 | 1_3:+30516803 | None:intergenic |
| GCAAAGAGGAAGAGCTGGTT+TGG | 0.366352 | 1_3:-30518292 | Msa0114110:CDS |
| GTAGACACTTTGAATCTTGA+TGG | 0.366793 | 1_3:+30517853 | None:intergenic |
| AGCAGCATGTGCAGCAGCAA+TGG | 0.368461 | 1_3:+30517952 | None:intergenic |
| GATAGAAGAGAATGAACTTA+AGG | 0.373711 | 1_3:-30517084 | Msa0114110:intron |
| TTTCTTATTGTGATATTTGA+AGG | 0.380678 | 1_3:+30516488 | None:intergenic |
| TGCTGCACATGCTGCTGCTG+AGG | 0.407521 | 1_3:-30517945 | Msa0114110:CDS |
| GAAAGCATTAAGAGCATTGA+AGG | 0.435294 | 1_3:-30517288 | Msa0114110:CDS |
| TAACAAGCTCATTTCATGCT+TGG | 0.446866 | 1_3:-30516196 | Msa0114110:three_prime_UTR |
| GTGATATTTGAAGGATGAGC+AGG | 0.463559 | 1_3:+30516497 | None:intergenic |
| AGAGGAAGAGCTGGTTTGGA+TGG | 0.468390 | 1_3:-30518288 | Msa0114110:CDS |
| GAGTTCCATGCCAAATTCTC+CGG | 0.468439 | 1_3:-30516381 | Msa0114110:CDS |
| GTTCTTTGACTATGGAGCTC+AGG | 0.473429 | 1_3:+30516864 | None:intergenic |
| GCAATACTCTTCTTCGCAAA+AGG | 0.475578 | 1_3:-30516754 | Msa0114110:intron |
| AGCTCCATAGTCAAAGAACT+TGG | 0.478610 | 1_3:-30516860 | Msa0114110:CDS |
| ATCCAAGGGAGACAGAAGTT+TGG | 0.479403 | 1_3:-30517879 | Msa0114110:CDS |
| GAGAAGACATTGAAGCCATA+TGG | 0.483583 | 1_3:-30516818 | Msa0114110:CDS |
| TAAAATCATCTCAAGGGTGT+AGG | 0.500016 | 1_3:-30516230 | Msa0114110:three_prime_UTR |
| TCTATTCATTTCTGAGTCAA+AGG | 0.501708 | 1_3:-30518257 | Msa0114110:CDS |
| GAAGATAATTGTCGTACTCT+AGG | 0.501842 | 1_3:-30516566 | Msa0114110:CDS |
| TTTGAAATATCATCAAGTAT+AGG | 0.504035 | 1_3:-30518357 | Msa0114110:five_prime_UTR |
| AGCACACCAAGGCTAAGAAC+AGG | 0.505885 | 1_3:-30516302 | Msa0114110:CDS |
| AAAATCATCTCAAGGGTGTA+GGG | 0.510041 | 1_3:-30516229 | Msa0114110:three_prime_UTR |
| TTCTTATTCGTATCTATCCA+AGG | 0.510544 | 1_3:-30517894 | Msa0114110:CDS |
| GAAAATCCTGTTCTTAGCCT+TGG | 0.515254 | 1_3:+30516296 | None:intergenic |
| GCTGAGGTTGTCAAGCTCAC+AGG | 0.518185 | 1_3:-30517929 | Msa0114110:CDS |
| AGCCAAACTTCTGTCTCCCT+TGG | 0.519244 | 1_3:+30517877 | None:intergenic |
| TCAGTCACAGCCATGTACTT+AGG | 0.520259 | 1_3:+30516353 | None:intergenic |
| TAATTCGCGGTGAAGCTGTT+AGG | 0.525219 | 1_3:-30517244 | Msa0114110:CDS |
| TGATGGCAAAGAGGAAGAGC+TGG | 0.538716 | 1_3:-30518297 | Msa0114110:CDS |
| AATCTAGCAAAGCTAAGGTA+AGG | 0.545302 | 1_3:-30516331 | Msa0114110:CDS |
| GACTGAATCTAGCAAAGCTA+AGG | 0.546421 | 1_3:-30516336 | Msa0114110:CDS |
| ATCTAGAAGCAAAAGAAATG+TGG | 0.547168 | 1_3:-30518115 | Msa0114110:intron |
| GAATTTCTAAAATCATCTCA+AGG | 0.547978 | 1_3:-30516237 | Msa0114110:exon |
| TGCAACAGCATCTGCTGCAG+AGG | 0.553690 | 1_3:-30517978 | Msa0114110:CDS |
| AGACTTCAAGCCATAATTCG+CGG | 0.555813 | 1_3:-30517257 | Msa0114110:CDS |
| GAGAAAGCATGCGTTGGCTG+TGG | 0.556955 | 1_3:-30518005 | Msa0114110:CDS |
| TCTAGAAGCAAAAGAAATGT+GGG | 0.574119 | 1_3:-30518114 | Msa0114110:intron |
| GAGGAAGAGCTGGTTTGGAT+GGG | 0.583062 | 1_3:-30518287 | Msa0114110:CDS |
| TCTTATTCGTATCTATCCAA+GGG | 0.585820 | 1_3:-30517893 | Msa0114110:CDS |
| ACATAAAGAAACGTGTAACT+GGG | 0.593317 | 1_3:-30516534 | Msa0114110:CDS |
| ATAAGAAATGAAGTGCAAGA+AGG | 0.595360 | 1_3:-30516473 | Msa0114110:CDS |
| GAGGTTGTCAAGCTCACAGG+TGG | 0.598455 | 1_3:-30517926 | Msa0114110:CDS |
| AATTTCTAAAATCATCTCAA+GGG | 0.608844 | 1_3:-30516236 | Msa0114110:exon |
| CATATGGTTAAGAAAGCAAG+AGG | 0.610953 | 1_3:-30516802 | Msa0114110:CDS |
| AAAGCATTAAGAGCATTGAA+GGG | 0.611416 | 1_3:-30517287 | Msa0114110:CDS |
| AGAACAGAGAAAGCATGCGT+TGG | 0.626125 | 1_3:-30518011 | Msa0114110:CDS |
| AATGTGGGTGGAGATTTGCA+AGG | 0.633509 | 1_3:-30518099 | Msa0114110:CDS |
| TAAACAAATGAAGAATACAA+TGG | 0.639658 | 1_3:+30515995 | None:intergenic |
| GGAAAGAAGCATCCATACGA+AGG | 0.643553 | 1_3:-30517159 | Msa0114110:CDS |
| AGAAGCAAAAGAAATGTGGG+TGG | 0.656332 | 1_3:-30518111 | Msa0114110:CDS |
| TAGATACGAATAAGAACGAG+AGG | 0.659867 | 1_3:+30517901 | None:intergenic |
| GGAAGCTCACGAGATGCGCA+CGG | 0.664783 | 1_3:+30517831 | None:intergenic |
| ATTGTCGTACTCTAGGAGAG+TGG | 0.674469 | 1_3:-30516559 | Msa0114110:CDS |
| AAGAAGAGTATTGCCTCATG+CGG | 0.677390 | 1_3:+30516763 | None:intergenic |
| TTATCAAAAGAGACCGCATG+AGG | 0.682261 | 1_3:-30516776 | Msa0114110:CDS |
| TAAGGTCTATGAGCACACCA+AGG | 0.745636 | 1_3:-30516313 | Msa0114110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAATTCTTTAATATTTT+AGG | - | chr1_3:30516549-30516568 | Msa0114110:CDS | 10.0% |
| !! | ATAAATCATAAATGTATACT+TGG | - | chr1_3:30516160-30516179 | Msa0114110:three_prime_UTR | 15.0% |
| !!! | TAATTATTCTTCAATTTTAG+TGG | - | chr1_3:30516729-30516748 | Msa0114110:intron | 15.0% |
| !! | ACATAAAATAGTCAAAAAAA+TGG | - | chr1_3:30517617-30517636 | Msa0114110:intron | 15.0% |
| !!! | TTTGAAATATCATCAAGTAT+AGG | - | chr1_3:30515968-30515987 | Msa0114110:three_prime_UTR | 20.0% |
| !! | ATGTGTTTGATGAATAAAAA+TGG | - | chr1_3:30515991-30516010 | Msa0114110:three_prime_UTR | 20.0% |
| !! | AGTAATATAATTGTCCATAT+AGG | - | chr1_3:30516638-30516657 | Msa0114110:intron | 20.0% |
| !!! | TTCTTTGTCAAATTTTTAGT+TGG | - | chr1_3:30516944-30516963 | Msa0114110:intron | 20.0% |
| !! | TATATGACATGAAAAAAGAA+AGG | + | chr1_3:30517652-30517671 | None:intergenic | 20.0% |
| !! | CCTAAAATATATACATTACA+TGG | + | chr1_3:30517686-30517705 | None:intergenic | 20.0% |
| !!! | CCATGTAATGTATATATTTT+AGG | - | chr1_3:30517683-30517702 | Msa0114110:intron | 20.0% |
| !! | TTTCTTATTGTGATATTTGA+AGG | + | chr1_3:30517840-30517859 | None:intergenic | 20.0% |
| !!! | AATTTCTAAAATCATCTCAA+GGG | - | chr1_3:30518089-30518108 | Msa0114110:CDS | 20.0% |
| !!! | TTTTAACGGATTTTTTTTCT+TGG | - | chr1_3:30518225-30518244 | Msa0114110:intron | 20.0% |
| !! | TAAACAAATGAAGAATACAA+TGG | + | chr1_3:30518333-30518352 | None:intergenic | 20.0% |
| !! | TTCATTTGTTTATATGAGTT+TGG | - | chr1_3:30518341-30518360 | Msa0114110:five_prime_UTR | 20.0% |
| ! | AATACTACAAAAGAAGAAAC+AGG | + | chr1_3:30516525-30516544 | None:intergenic | 25.0% |
| ! | TAGACAAAATTAGCAAGAAT+TGG | - | chr1_3:30516589-30516608 | Msa0114110:CDS | 25.0% |
| !!! | AAGAGATGGATTAACTTTAT+AGG | - | chr1_3:30516665-30516684 | Msa0114110:intron | 25.0% |
| !! | ATGGATTAACTTTATAGGAA+AGG | - | chr1_3:30516670-30516689 | Msa0114110:intron | 25.0% |
| ! | TAACTTTATAGGAAAGGAAA+AGG | - | chr1_3:30516676-30516695 | Msa0114110:intron | 25.0% |
| ! | CTTGATCTTGAATTCTAAAT+TGG | - | chr1_3:30516998-30517017 | Msa0114110:intron | 25.0% |
| !!! | TTCTAAATTGGTAATGAAAC+AGG | - | chr1_3:30517010-30517029 | Msa0114110:intron | 25.0% |
| !! | CTATCTTTTTCTTTTGCTTT+GGG | + | chr1_3:30517226-30517245 | None:intergenic | 25.0% |
| !! | TCTATCTTTTTCTTTTGCTT+TGG | + | chr1_3:30517227-30517246 | None:intergenic | 25.0% |
| !! | GAGTTGATTATATATCATGA+GGG | + | chr1_3:30517427-30517446 | None:intergenic | 25.0% |
| !!! | TGAGTTGATTATATATCATG+AGG | + | chr1_3:30517428-30517447 | None:intergenic | 25.0% |
| !! | CATGAGAAAATGATTTTCTT+TGG | + | chr1_3:30517899-30517918 | None:intergenic | 25.0% |
| ! | CATGTAAAAAGAAGTTCAAT+CGG | - | chr1_3:30517915-30517934 | Msa0114110:CDS | 25.0% |
| !!! | GATTTTAGAAATTCATGCAT+TGG | + | chr1_3:30518082-30518101 | None:intergenic | 25.0% |
| !!! | GAATTTCTAAAATCATCTCA+AGG | - | chr1_3:30518088-30518107 | Msa0114110:CDS | 25.0% |
| ! | AAAATCTTCACATGCATATA+TGG | - | chr1_3:30518166-30518185 | Msa0114110:intron | 25.0% |
| !! | CCATTACGTTTTTCTTTTAA+CGG | - | chr1_3:30518211-30518230 | Msa0114110:intron | 25.0% |
| !!! | TTTTTTTCTTGGTTTTTGAG+AGG | - | chr1_3:30518236-30518255 | Msa0114110:intron | 25.0% |
| TGGTATGTGAAAAATCTTGA+TGG | - | chr1_3:30516011-30516030 | Msa0114110:three_prime_UTR | 30.0% | |
| TCTATTCATTTCTGAGTCAA+AGG | - | chr1_3:30516068-30516087 | Msa0114110:three_prime_UTR | 30.0% | |
| ATCTAGAAGCAAAAGAAATG+TGG | - | chr1_3:30516210-30516229 | Msa0114110:three_prime_UTR | 30.0% | |
| TCTAGAAGCAAAAGAAATGT+GGG | - | chr1_3:30516211-30516230 | Msa0114110:three_prime_UTR | 30.0% | |
| !! | TGTTTGAAGCTGTAATTTTG+GGG | + | chr1_3:30516272-30516291 | None:intergenic | 30.0% |
| !! | CTGTTTGAAGCTGTAATTTT+GGG | + | chr1_3:30516273-30516292 | None:intergenic | 30.0% |
| !! | TCTGTTTGAAGCTGTAATTT+TGG | + | chr1_3:30516274-30516293 | None:intergenic | 30.0% |
| TTCTTATTCGTATCTATCCA+AGG | - | chr1_3:30516431-30516450 | Msa0114110:CDS | 30.0% | |
| TCTTATTCGTATCTATCCAA+GGG | - | chr1_3:30516432-30516451 | Msa0114110:CDS | 30.0% | |
| !!! | TCAATTTTAGTGGATTGTAG+TGG | - | chr1_3:30516739-30516758 | Msa0114110:intron | 30.0% |
| ATTCTCAGAGTGAAATAGAA+AGG | + | chr1_3:30516852-30516871 | None:intergenic | 30.0% | |
| !! | AAAGCATTAAGAGCATTGAA+GGG | - | chr1_3:30517038-30517057 | Msa0114110:intron | 30.0% |
| ! | TTCTGAGTTTTTGCATTTGA+GGG | + | chr1_3:30517137-30517156 | None:intergenic | 30.0% |
| AAAAACTCAGAAGGAAATTC+AGG | - | chr1_3:30517145-30517164 | Msa0114110:CDS | 30.0% | |
| GATAGAAGAGAATGAACTTA+AGG | - | chr1_3:30517241-30517260 | Msa0114110:CDS | 30.0% | |
| AATTCCAAGTTCTTTGACTA+TGG | + | chr1_3:30517472-30517491 | None:intergenic | 30.0% | |
| TCTTTGCACAACAAAGAATT+TGG | - | chr1_3:30517735-30517754 | Msa0114110:intron | 30.0% | |
| TACATAAAGAAACGTGTAAC+TGG | - | chr1_3:30517790-30517809 | Msa0114110:intron | 30.0% | |
| ACATAAAGAAACGTGTAACT+GGG | - | chr1_3:30517791-30517810 | Msa0114110:intron | 30.0% | |
| ATAAGAAATGAAGTGCAAGA+AGG | - | chr1_3:30517852-30517871 | Msa0114110:CDS | 30.0% | |
| ! | GTGAAGATTTTCAAAATGTG+AGG | + | chr1_3:30518157-30518176 | None:intergenic | 30.0% |
| CCGTTAAAAGAAAAACGTAA+TGG | + | chr1_3:30518214-30518233 | None:intergenic | 30.0% | |
| ! | GAAAAATCTTGATGGCAAAG+AGG | - | chr1_3:30516019-30516038 | Msa0114110:three_prime_UTR | 35.0% |
| TAGATACGAATAAGAACGAG+AGG | + | chr1_3:30516427-30516446 | None:intergenic | 35.0% | |
| GTAGACACTTTGAATCTTGA+TGG | + | chr1_3:30516475-30516494 | None:intergenic | 35.0% | |
| CAAAAGAAGAAACAGGTTGT+AGG | + | chr1_3:30516518-30516537 | None:intergenic | 35.0% | |
| TCCATATAGGTGAAAAGAGA+TGG | - | chr1_3:30516651-30516670 | Msa0114110:intron | 35.0% | |
| ! | TCCATCTCTTTTCACCTATA+TGG | + | chr1_3:30516655-30516674 | None:intergenic | 35.0% |
| !! | TAGTGGATTGTAGTGGAAAT+TGG | - | chr1_3:30516746-30516765 | Msa0114110:intron | 35.0% |
| !! | AATTGGTAATGAAACAGGCT+AGG | - | chr1_3:30517015-30517034 | Msa0114110:intron | 35.0% |
| !! | GAAAGCATTAAGAGCATTGA+AGG | - | chr1_3:30517037-30517056 | Msa0114110:intron | 35.0% |
| GGGAATATTCTTCAAAGTTC+TGG | + | chr1_3:30517117-30517136 | None:intergenic | 35.0% | |
| ! | CTTCTGAGTTTTTGCATTTG+AGG | + | chr1_3:30517138-30517157 | None:intergenic | 35.0% |
| CTCAAATGCAAAAACTCAGA+AGG | - | chr1_3:30517136-30517155 | Msa0114110:CDS | 35.0% | |
| ! | TGTAGTTTTCTTCCTTCGTA+TGG | + | chr1_3:30517181-30517200 | None:intergenic | 35.0% |
| !!! | GCTTTGGGAACTGTTTTATA+TGG | + | chr1_3:30517211-30517230 | None:intergenic | 35.0% |
| !!! | CTAATTACGCCTTTTTTGTG+TGG | - | chr1_3:30517362-30517381 | Msa0114110:intron | 35.0% |
| AGTTAGCATCCACACAAAAA+AGG | + | chr1_3:30517374-30517393 | None:intergenic | 35.0% | |
| CTCTTGCTTTCTTAACCATA+TGG | + | chr1_3:30517525-30517544 | None:intergenic | 35.0% | |
| CATATGGTTAAGAAAGCAAG+AGG | - | chr1_3:30517523-30517542 | Msa0114110:intron | 35.0% | |
| CAAAGATTCTTCCACCATTT+GGG | + | chr1_3:30517721-30517740 | None:intergenic | 35.0% | |
| GAAGATAATTGTCGTACTCT+AGG | - | chr1_3:30517759-30517778 | Msa0114110:intron | 35.0% | |
| TTAGGAAAAACCGGAGAATT+TGG | + | chr1_3:30517957-30517976 | None:intergenic | 35.0% | |
| AATCTAGCAAAGCTAAGGTA+AGG | - | chr1_3:30517994-30518013 | Msa0114110:CDS | 35.0% | |
| ! | AAGGCTAAGAACAGGATTTT+CGG | - | chr1_3:30518031-30518050 | Msa0114110:CDS | 35.0% |
| ! | TAAAATCATCTCAAGGGTGT+AGG | - | chr1_3:30518095-30518114 | Msa0114110:CDS | 35.0% |
| ! | AAAATCATCTCAAGGGTGTA+GGG | - | chr1_3:30518096-30518115 | Msa0114110:CDS | 35.0% |
| TAACAAGCTCATTTCATGCT+TGG | - | chr1_3:30518129-30518148 | Msa0114110:intron | 35.0% | |
| AGAAGCAAAAGAAATGTGGG+TGG | - | chr1_3:30516214-30516233 | Msa0114110:three_prime_UTR | 40.0% | |
| AGACTTCAAGCCATAATTCG+CGG | - | chr1_3:30517068-30517087 | Msa0114110:intron | 40.0% | |
| AGCTCCATAGTCAAAGAACT+TGG | - | chr1_3:30517465-30517484 | Msa0114110:intron | 40.0% | |
| GAGAAGACATTGAAGCCATA+TGG | - | chr1_3:30517507-30517526 | Msa0114110:intron | 40.0% | |
| TTATCAAAAGAGACCGCATG+AGG | - | chr1_3:30517549-30517568 | Msa0114110:intron | 40.0% | |
| !! | AAGAAGAGTATTGCCTCATG+CGG | + | chr1_3:30517565-30517584 | None:intergenic | 40.0% |
| GCAATACTCTTCTTCGCAAA+AGG | - | chr1_3:30517571-30517590 | Msa0114110:intron | 40.0% | |
| ! | GGAGAGAATGTTTTCCCAAA+TGG | - | chr1_3:30517704-30517723 | Msa0114110:intron | 40.0% |
| ! | GAGAATGTTTTCCCAAATGG+TGG | - | chr1_3:30517707-30517726 | Msa0114110:intron | 40.0% |
| GCAAAGATTCTTCCACCATT+TGG | + | chr1_3:30517722-30517741 | None:intergenic | 40.0% | |
| GTGATATTTGAAGGATGAGC+AGG | + | chr1_3:30517831-30517850 | None:intergenic | 40.0% | |
| AAAAACCGGAGAATTTGGCA+TGG | + | chr1_3:30517952-30517971 | None:intergenic | 40.0% | |
| ! | TCCGGTTTTTCCTAAGTACA+TGG | - | chr1_3:30517962-30517981 | Msa0114110:CDS | 40.0% |
| GCCATGTACTTAGGAAAAAC+CGG | + | chr1_3:30517966-30517985 | None:intergenic | 40.0% | |
| GACTGAATCTAGCAAAGCTA+AGG | - | chr1_3:30517989-30518008 | Msa0114110:CDS | 40.0% | |
| GAAAATCCTGTTCTTAGCCT+TGG | + | chr1_3:30518032-30518051 | None:intergenic | 40.0% | |
| AATGTGGGTGGAGATTTGCA+AGG | - | chr1_3:30516226-30516245 | Msa0114110:three_prime_UTR | 45.0% | |
| ! | AGAACAGAGAAAGCATGCGT+TGG | - | chr1_3:30516314-30516333 | Msa0114110:CDS | 45.0% |
| ATCCAAGGGAGACAGAAGTT+TGG | - | chr1_3:30516446-30516465 | Msa0114110:CDS | 45.0% | |
| AACAGCTTCACCGCGAATTA+TGG | + | chr1_3:30517081-30517100 | None:intergenic | 45.0% | |
| TAATTCGCGGTGAAGCTGTT+AGG | - | chr1_3:30517081-30517100 | Msa0114110:intron | 45.0% | |
| !! | GGAAAGAAGCATCCATACGA+AGG | - | chr1_3:30517166-30517185 | Msa0114110:CDS | 45.0% |
| GTTCTTTGACTATGGAGCTC+AGG | + | chr1_3:30517464-30517483 | None:intergenic | 45.0% | |
| ! | ATTGTCGTACTCTAGGAGAG+TGG | - | chr1_3:30517766-30517785 | Msa0114110:intron | 45.0% |
| GAGTTCCATGCCAAATTCTC+CGG | - | chr1_3:30517944-30517963 | Msa0114110:CDS | 45.0% | |
| TCAGTCACAGCCATGTACTT+AGG | + | chr1_3:30517975-30517994 | None:intergenic | 45.0% | |
| TAAGGTCTATGAGCACACCA+AGG | - | chr1_3:30518012-30518031 | Msa0114110:CDS | 45.0% | |
| !! | AATTATATTACTAAAATAAA+AGG | + | chr1_3:30516630-30516649 | None:intergenic | 5.0% |
| TGATGGCAAAGAGGAAGAGC+TGG | - | chr1_3:30516028-30516047 | Msa0114110:three_prime_UTR | 50.0% | |
| GCAAAGAGGAAGAGCTGGTT+TGG | - | chr1_3:30516033-30516052 | Msa0114110:three_prime_UTR | 50.0% | |
| !! | AGAGGAAGAGCTGGTTTGGA+TGG | - | chr1_3:30516037-30516056 | Msa0114110:three_prime_UTR | 50.0% |
| !! | GAGGAAGAGCTGGTTTGGAT+GGG | - | chr1_3:30516038-30516057 | Msa0114110:three_prime_UTR | 50.0% |
| AGCCAAACTTCTGTCTCCCT+TGG | + | chr1_3:30516451-30516470 | None:intergenic | 50.0% | |
| AGCACACCAAGGCTAAGAAC+AGG | - | chr1_3:30518023-30518042 | Msa0114110:CDS | 50.0% | |
| !! | GAGAAAGCATGCGTTGGCTG+TGG | - | chr1_3:30516320-30516339 | Msa0114110:CDS | 55.0% |
| TGCAACAGCATCTGCTGCAG+AGG | - | chr1_3:30516347-30516366 | Msa0114110:CDS | 55.0% | |
| AGCAGCATGTGCAGCAGCAA+TGG | + | chr1_3:30516376-30516395 | None:intergenic | 55.0% | |
| GCTGAGGTTGTCAAGCTCAC+AGG | - | chr1_3:30516396-30516415 | Msa0114110:CDS | 55.0% | |
| GAGGTTGTCAAGCTCACAGG+TGG | - | chr1_3:30516399-30516418 | Msa0114110:CDS | 55.0% | |
| TGCTGCACATGCTGCTGCTG+AGG | - | chr1_3:30516380-30516399 | Msa0114110:CDS | 60.0% | |
| GGAAGCTCACGAGATGCGCA+CGG | + | chr1_3:30516497-30516516 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 30515945 | 30518402 | 30515945 | ID=Msa0114110;Name=Msa0114110 |
| chr1_3 | mRNA | 30515945 | 30518402 | 30515945 | ID=Msa0114110-mRNA-1;Parent=Msa0114110;Name=Msa0114110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|1|1|1|1|1|5|305|370 |
| chr1_3 | exon | 30515945 | 30516642 | 30515945 | ID=Msa0114110-mRNA-1:exon:10129;Parent=Msa0114110-mRNA-1 |
| chr1_3 | exon | 30516755 | 30516886 | 30516755 | ID=Msa0114110-mRNA-1:exon:10128;Parent=Msa0114110-mRNA-1 |
| chr1_3 | exon | 30517085 | 30517315 | 30517085 | ID=Msa0114110-mRNA-1:exon:10127;Parent=Msa0114110-mRNA-1 |
| chr1_3 | exon | 30517841 | 30518131 | 30517841 | ID=Msa0114110-mRNA-1:exon:10126;Parent=Msa0114110-mRNA-1 |
| chr1_3 | exon | 30518252 | 30518402 | 30518252 | ID=Msa0114110-mRNA-1:exon:10125;Parent=Msa0114110-mRNA-1 |
| chr1_3 | five_prime_UTR | 30518318 | 30518402 | 30518318 | ID=Msa0114110-mRNA-1:five_prime_utr;Parent=Msa0114110-mRNA-1 |
| chr1_3 | CDS | 30518252 | 30518317 | 30518252 | ID=Msa0114110-mRNA-1:cds;Parent=Msa0114110-mRNA-1 |
| chr1_3 | CDS | 30517841 | 30518131 | 30517841 | ID=Msa0114110-mRNA-1:cds;Parent=Msa0114110-mRNA-1 |
| chr1_3 | CDS | 30517085 | 30517315 | 30517085 | ID=Msa0114110-mRNA-1:cds;Parent=Msa0114110-mRNA-1 |
| chr1_3 | CDS | 30516755 | 30516886 | 30516755 | ID=Msa0114110-mRNA-1:cds;Parent=Msa0114110-mRNA-1 |
| chr1_3 | CDS | 30516250 | 30516642 | 30516250 | ID=Msa0114110-mRNA-1:cds;Parent=Msa0114110-mRNA-1 |
| chr1_3 | three_prime_UTR | 30515945 | 30516249 | 30515945 | ID=Msa0114110-mRNA-1:three_prime_utr;Parent=Msa0114110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
