Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115770 | sp|Q9FMW4|GEML8_ARATH | 59.799 | 199 | 80 | 0 | 16 | 214 | 18 | 216 | 2.07e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115770 | A0A1S2Y1F9 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 3.58e-136 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054920 | Msa0115770 | 0.808522 | 2.972246e-50 | -8.615850e-47 |
| Msa0115770 | Msa0144530 | 0.822480 | 2.315777e-53 | -8.615850e-47 |
| Msa0115770 | Msa0204960 | 0.805604 | 1.232322e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115770 | MtrunA17_Chr1g0212091 | 83.486 | 218 | 29 | 1 | 1 | 211 | 1 | 218 | 8.97e-133 | 372 |
| Msa0115770 | MtrunA17_Chr1g0162171 | 63.636 | 220 | 70 | 2 | 5 | 214 | 4 | 223 | 1.95e-96 | 280 |
| Msa0115770 | MtrunA17_Chr1g0212121 | 54.386 | 228 | 80 | 3 | 1 | 214 | 1 | 218 | 9.20e-80 | 238 |
| Msa0115770 | MtrunA17_Chr1g0212181 | 51.092 | 229 | 88 | 3 | 1 | 215 | 1 | 219 | 4.99e-72 | 218 |
| Msa0115770 | MtrunA17_Chr1g0212171 | 49.107 | 224 | 101 | 3 | 1 | 214 | 1 | 221 | 1.06e-71 | 217 |
| Msa0115770 | MtrunA17_Chr1g0212111 | 93.966 | 116 | 7 | 0 | 104 | 219 | 47 | 162 | 2.62e-69 | 209 |
| Msa0115770 | MtrunA17_Chr8g0388871 | 58.896 | 163 | 66 | 1 | 53 | 214 | 23 | 185 | 2.70e-63 | 194 |
| Msa0115770 | MtrunA17_Chr6g0481891 | 55.625 | 160 | 71 | 0 | 57 | 216 | 42 | 201 | 7.99e-63 | 194 |
| Msa0115770 | MtrunA17_Chr7g0251801 | 35.938 | 192 | 123 | 0 | 21 | 212 | 84 | 275 | 5.72e-44 | 149 |
| Msa0115770 | MtrunA17_Chr8g0367701 | 35.912 | 181 | 105 | 2 | 41 | 211 | 88 | 267 | 5.36e-42 | 143 |
| Msa0115770 | MtrunA17_Chr3g0133221 | 32.692 | 208 | 128 | 3 | 15 | 211 | 49 | 255 | 4.44e-41 | 140 |
| Msa0115770 | MtrunA17_Chr2g0315771 | 34.375 | 192 | 125 | 1 | 23 | 213 | 36 | 227 | 5.48e-34 | 121 |
| Msa0115770 | MtrunA17_Chr1g0212131 | 59.016 | 61 | 25 | 0 | 153 | 213 | 3 | 63 | 1.31e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115770 | AT5G23370.1 | 59.799 | 199 | 80 | 0 | 16 | 214 | 18 | 216 | 2.11e-82 | 244 |
| Msa0115770 | AT5G08350.1 | 57.576 | 198 | 75 | 2 | 21 | 214 | 23 | 215 | 6.13e-78 | 233 |
| Msa0115770 | AT5G23350.1 | 55.340 | 206 | 82 | 2 | 16 | 216 | 18 | 218 | 1.79e-77 | 232 |
| Msa0115770 | AT5G23360.1 | 53.960 | 202 | 83 | 2 | 16 | 216 | 18 | 210 | 4.79e-75 | 226 |
| Msa0115770 | AT4G01600.3 | 40.909 | 176 | 103 | 1 | 41 | 215 | 14 | 189 | 1.69e-48 | 157 |
| Msa0115770 | AT4G01600.1 | 40.909 | 176 | 103 | 1 | 41 | 215 | 53 | 228 | 5.31e-48 | 157 |
| Msa0115770 | AT5G13200.1 | 36.702 | 188 | 119 | 0 | 28 | 215 | 77 | 264 | 4.92e-45 | 151 |
| Msa0115770 | AT4G01600.2 | 43.709 | 151 | 84 | 1 | 66 | 215 | 73 | 223 | 1.91e-43 | 145 |
| Msa0115770 | AT1G28200.1 | 35.354 | 198 | 117 | 4 | 22 | 211 | 60 | 254 | 2.08e-41 | 141 |
| Msa0115770 | AT1G28200.2 | 35.354 | 198 | 117 | 4 | 22 | 211 | 60 | 254 | 2.08e-41 | 141 |
| Msa0115770 | AT2G22475.1 | 38.509 | 161 | 96 | 2 | 52 | 211 | 133 | 291 | 4.64e-41 | 142 |
| Msa0115770 | AT5G13200.2 | 33.333 | 132 | 88 | 0 | 28 | 159 | 77 | 208 | 2.20e-25 | 99.0 |
| Msa0115770 | AT4G40100.1 | 29.299 | 157 | 71 | 2 | 55 | 211 | 100 | 216 | 8.95e-22 | 89.7 |
| Msa0115770 | AT2G22475.2 | 34.746 | 118 | 74 | 2 | 52 | 168 | 133 | 248 | 1.77e-20 | 86.7 |
Find 41 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATAACAGATACAGTAAA+AGG | 0.228633 | 1_3:+34694258 | Msa0115770:CDS |
| TTTACTGTATCTGTTATCTT+TGG | 0.247894 | 1_3:-34694255 | None:intergenic |
| TTTCTTCATGAGTTACTTCA+TGG | 0.276903 | 1_3:+34693818 | Msa0115770:CDS |
| AGATATCTGCCTGATTCTTC+TGG | 0.324067 | 1_3:+34693863 | Msa0115770:CDS |
| GTTGGGAGCCAGAATTCTTC+AGG | 0.336328 | 1_3:+34694290 | Msa0115770:CDS |
| CCCGCCAACCTGAAGAATTC+TGG | 0.351542 | 1_3:-34694298 | None:intergenic |
| GATGAACATGTTTGGAAGAA+AGG | 0.373892 | 1_3:+34694037 | Msa0115770:CDS |
| ATTCATTAGAGTTCACTATA+AGG | 0.401080 | 1_3:+34694497 | Msa0115770:CDS |
| CTGTATATGCCAGAAGAATC+AGG | 0.412229 | 1_3:-34693872 | None:intergenic |
| ATGACTAAGATGAACATGTT+TGG | 0.423883 | 1_3:+34694029 | Msa0115770:CDS |
| ATGAACATGTTTGGAAGAAA+GGG | 0.430526 | 1_3:+34694038 | Msa0115770:CDS |
| CCAGAATTCTTCAGGTTGGC+GGG | 0.441065 | 1_3:+34694298 | Msa0115770:CDS |
| GCCAGAATTCTTCAGGTTGG+CGG | 0.449134 | 1_3:+34694297 | Msa0115770:CDS |
| CTCTAAATCTCAGAGGGAAA+AGG | 0.451562 | 1_3:+34694680 | Msa0115770:CDS |
| ATCAAAATTTCTTCCTCGAA+TGG | 0.453468 | 1_3:+34694471 | Msa0115770:CDS |
| ACCTTGCTTTGACTTTGTGA+TGG | 0.474385 | 1_3:-34693900 | None:intergenic |
| TCTAATGAATTCTCCATTCG+AGG | 0.480167 | 1_3:-34694484 | None:intergenic |
| ATGAAGAGAAGGCCAGCTAT+AGG | 0.493362 | 1_3:-34694411 | None:intergenic |
| AGTAAAAGGGAAACTGAGGT+TGG | 0.524536 | 1_3:+34694272 | Msa0115770:CDS |
| TTGTAACCTGCAGTGAGACT+TGG | 0.527828 | 1_3:+34694231 | Msa0115770:intron |
| GAGATTTAGAGATAGCCTGC+TGG | 0.531131 | 1_3:-34694668 | None:intergenic |
| ACCACATCAGGTCCTATAGC+TGG | 0.538413 | 1_3:+34694399 | Msa0115770:CDS |
| AGATAACAGATACAGTAAAA+GGG | 0.540258 | 1_3:+34694259 | Msa0115770:CDS |
| GGAGCCAGAATTCTTCAGGT+TGG | 0.551383 | 1_3:+34694294 | Msa0115770:CDS |
| TGTGGATCTTAGTTGAGCAA+AGG | 0.560469 | 1_3:-34693776 | None:intergenic |
| TGTTACTTATCAACCACATC+AGG | 0.561299 | 1_3:+34694387 | Msa0115770:CDS |
| AGCTTTAAGATATCTCCAGC+AGG | 0.564241 | 1_3:+34694653 | Msa0115770:CDS |
| GGCTATCTCTAAATCTCAGA+GGG | 0.564713 | 1_3:+34694674 | Msa0115770:CDS |
| GCACATGGAGTCCGAGAGCA+TGG | 0.566367 | 1_3:+34694071 | Msa0115770:CDS |
| GTAAAAGGGAAACTGAGGTT+GGG | 0.569074 | 1_3:+34694273 | Msa0115770:CDS |
| TCCATCACAAAGTCAAAGCA+AGG | 0.594218 | 1_3:+34693899 | Msa0115770:CDS |
| AAGATTACATACCATGCTCT+CGG | 0.595383 | 1_3:-34694082 | None:intergenic |
| ATAGAAATAGTCACTGTGGA+TGG | 0.601998 | 1_3:+34694591 | Msa0115770:CDS |
| ACAGAAAGCAACTTTGTGAG+TGG | 0.605272 | 1_3:-34694436 | None:intergenic |
| TGTGAGTGGAAATGAAGAGA+AGG | 0.611200 | 1_3:-34694422 | None:intergenic |
| GCCAGCTATAGGACCTGATG+TGG | 0.646534 | 1_3:-34694400 | None:intergenic |
| CAGAATTCTTCAGGTTGGCG+GGG | 0.646633 | 1_3:+34694299 | Msa0115770:CDS |
| AGGCAGATATCTCTTTGATG+AGG | 0.651918 | 1_3:-34693852 | None:intergenic |
| ATACAGTAAAAGGGAAACTG+AGG | 0.664591 | 1_3:+34694268 | Msa0115770:CDS |
| AGGCTATCTCTAAATCTCAG+AGG | 0.678214 | 1_3:+34694673 | Msa0115770:CDS |
| ATACATAGAAATAGTCACTG+TGG | 0.703928 | 1_3:+34694587 | Msa0115770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATAATAAAGTTTTGTT+AGG | - | chr1_3:34693935-34693954 | None:intergenic | 15.0% |
| !!! | TGAAATAATAAAGTTTTGTT+AGG | - | chr1_3:34693935-34693954 | None:intergenic | 15.0% |
| !!! | TTTAATGTCATTGATGATAA+TGG | + | chr1_3:34693972-34693991 | Msa0115770:intron | 20.0% |
| !!! | ACTTGTTGTATTTTTTCATA+TGG | - | chr1_3:34694531-34694550 | None:intergenic | 20.0% |
| !!! | ATTTCTATGTATTTTTCTGA+TGG | - | chr1_3:34694579-34694598 | None:intergenic | 20.0% |
| !!! | TTTAATGTCATTGATGATAA+TGG | + | chr1_3:34693972-34693991 | Msa0115770:intron | 20.0% |
| !!! | ACTTGTTGTATTTTTTCATA+TGG | - | chr1_3:34694531-34694550 | None:intergenic | 20.0% |
| !!! | ATTTCTATGTATTTTTCTGA+TGG | - | chr1_3:34694579-34694598 | None:intergenic | 20.0% |
| !! | AATGGTCATTTCATATTTTC+AGG | + | chr1_3:34693990-34694009 | Msa0115770:intron | 25.0% |
| !! | ATGATGCATCATACATATTT+TGG | - | chr1_3:34694151-34694170 | None:intergenic | 25.0% |
| !! | ATGATGCATCATTTGAAATT+TGG | + | chr1_3:34694159-34694178 | Msa0115770:intron | 25.0% |
| !! | CATTTGAAATTTGGAATGAT+TGG | + | chr1_3:34694168-34694187 | Msa0115770:intron | 25.0% |
| ! | TAGAATGAAGTAGTAATTGA+TGG | + | chr1_3:34694195-34694214 | Msa0115770:intron | 25.0% |
| ! | TTTACTGTATCTGTTATCTT+TGG | - | chr1_3:34694258-34694277 | None:intergenic | 25.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | + | chr1_3:34694258-34694277 | Msa0115770:CDS | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | + | chr1_3:34694259-34694278 | Msa0115770:CDS | 25.0% |
| ! | ATTCATTAGAGTTCACTATA+AGG | + | chr1_3:34694497-34694516 | Msa0115770:CDS | 25.0% |
| !!! | GTTTCATCATATTTTGACTT+TGG | - | chr1_3:34694557-34694576 | None:intergenic | 25.0% |
| !! | AATGGTCATTTCATATTTTC+AGG | + | chr1_3:34693990-34694009 | Msa0115770:intron | 25.0% |
| !! | ATGATGCATCATACATATTT+TGG | - | chr1_3:34694151-34694170 | None:intergenic | 25.0% |
| !! | ATGATGCATCATTTGAAATT+TGG | + | chr1_3:34694159-34694178 | Msa0115770:intron | 25.0% |
| !! | CATTTGAAATTTGGAATGAT+TGG | + | chr1_3:34694168-34694187 | Msa0115770:intron | 25.0% |
| ! | TAGAATGAAGTAGTAATTGA+TGG | + | chr1_3:34694195-34694214 | Msa0115770:intron | 25.0% |
| ! | TTTACTGTATCTGTTATCTT+TGG | - | chr1_3:34694258-34694277 | None:intergenic | 25.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | + | chr1_3:34694258-34694277 | Msa0115770:CDS | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | + | chr1_3:34694259-34694278 | Msa0115770:CDS | 25.0% |
| ! | ATTCATTAGAGTTCACTATA+AGG | + | chr1_3:34694497-34694516 | Msa0115770:CDS | 25.0% |
| !!! | GTTTCATCATATTTTGACTT+TGG | - | chr1_3:34694557-34694576 | None:intergenic | 25.0% |
| !! | GATGTCTTCATTTTTGTTTG+TGG | - | chr1_3:34693797-34693816 | None:intergenic | 30.0% |
| TTTCTTCATGAGTTACTTCA+TGG | + | chr1_3:34693818-34693837 | Msa0115770:CDS | 30.0% | |
| ATGACTAAGATGAACATGTT+TGG | + | chr1_3:34694029-34694048 | Msa0115770:CDS | 30.0% | |
| ATGAACATGTTTGGAAGAAA+GGG | + | chr1_3:34694038-34694057 | Msa0115770:CDS | 30.0% | |
| ! | ATTCGAGGAAGAAATTTTGA+TGG | - | chr1_3:34694472-34694491 | None:intergenic | 30.0% |
| ATCAAAATTTCTTCCTCGAA+TGG | + | chr1_3:34694471-34694490 | Msa0115770:CDS | 30.0% | |
| ATACATAGAAATAGTCACTG+TGG | + | chr1_3:34694587-34694606 | Msa0115770:CDS | 30.0% | |
| !! | GATGTCTTCATTTTTGTTTG+TGG | - | chr1_3:34693797-34693816 | None:intergenic | 30.0% |
| TTTCTTCATGAGTTACTTCA+TGG | + | chr1_3:34693818-34693837 | Msa0115770:CDS | 30.0% | |
| ATGACTAAGATGAACATGTT+TGG | + | chr1_3:34694029-34694048 | Msa0115770:CDS | 30.0% | |
| ATGAACATGTTTGGAAGAAA+GGG | + | chr1_3:34694038-34694057 | Msa0115770:CDS | 30.0% | |
| ! | ATTCGAGGAAGAAATTTTGA+TGG | - | chr1_3:34694472-34694491 | None:intergenic | 30.0% |
| ATCAAAATTTCTTCCTCGAA+TGG | + | chr1_3:34694471-34694490 | Msa0115770:CDS | 30.0% | |
| ATACATAGAAATAGTCACTG+TGG | + | chr1_3:34694587-34694606 | Msa0115770:CDS | 30.0% | |
| GATGAACATGTTTGGAAGAA+AGG | + | chr1_3:34694037-34694056 | Msa0115770:CDS | 35.0% | |
| AAGATTACATACCATGCTCT+CGG | - | chr1_3:34694085-34694104 | None:intergenic | 35.0% | |
| ATACAGTAAAAGGGAAACTG+AGG | + | chr1_3:34694268-34694287 | Msa0115770:CDS | 35.0% | |
| ! | TGTTACTTATCAACCACATC+AGG | + | chr1_3:34694387-34694406 | Msa0115770:CDS | 35.0% |
| TCTAATGAATTCTCCATTCG+AGG | - | chr1_3:34694487-34694506 | None:intergenic | 35.0% | |
| ATAGAAATAGTCACTGTGGA+TGG | + | chr1_3:34694591-34694610 | Msa0115770:CDS | 35.0% | |
| !!! | TGGTTTTGACTTCTGGTTTA+TGG | + | chr1_3:34694611-34694630 | Msa0115770:CDS | 35.0% |
| !!! | GGTTTTGACTTCTGGTTTAT+GGG | + | chr1_3:34694612-34694631 | Msa0115770:CDS | 35.0% |
| GATGAACATGTTTGGAAGAA+AGG | + | chr1_3:34694037-34694056 | Msa0115770:CDS | 35.0% | |
| AAGATTACATACCATGCTCT+CGG | - | chr1_3:34694085-34694104 | None:intergenic | 35.0% | |
| ATACAGTAAAAGGGAAACTG+AGG | + | chr1_3:34694268-34694287 | Msa0115770:CDS | 35.0% | |
| ! | TGTTACTTATCAACCACATC+AGG | + | chr1_3:34694387-34694406 | Msa0115770:CDS | 35.0% |
| TCTAATGAATTCTCCATTCG+AGG | - | chr1_3:34694487-34694506 | None:intergenic | 35.0% | |
| ATAGAAATAGTCACTGTGGA+TGG | + | chr1_3:34694591-34694610 | Msa0115770:CDS | 35.0% | |
| !!! | TGGTTTTGACTTCTGGTTTA+TGG | + | chr1_3:34694611-34694630 | Msa0115770:CDS | 35.0% |
| !!! | GGTTTTGACTTCTGGTTTAT+GGG | + | chr1_3:34694612-34694631 | Msa0115770:CDS | 35.0% |
| TGTGGATCTTAGTTGAGCAA+AGG | - | chr1_3:34693779-34693798 | None:intergenic | 40.0% | |
| AGGCAGATATCTCTTTGATG+AGG | - | chr1_3:34693855-34693874 | None:intergenic | 40.0% | |
| AGATATCTGCCTGATTCTTC+TGG | + | chr1_3:34693863-34693882 | Msa0115770:CDS | 40.0% | |
| CTGTATATGCCAGAAGAATC+AGG | - | chr1_3:34693875-34693894 | None:intergenic | 40.0% | |
| TCCATCACAAAGTCAAAGCA+AGG | + | chr1_3:34693899-34693918 | Msa0115770:CDS | 40.0% | |
| ! | ACCTTGCTTTGACTTTGTGA+TGG | - | chr1_3:34693903-34693922 | None:intergenic | 40.0% |
| CACAAAGTCAAAGCAAGGTA+TGG | + | chr1_3:34693904-34693923 | Msa0115770:intron | 40.0% | |
| ! | GAGAGCATGGTATGTAATCT+TGG | + | chr1_3:34694084-34694103 | Msa0115770:intron | 40.0% |
| AGTAAAAGGGAAACTGAGGT+TGG | + | chr1_3:34694272-34694291 | Msa0115770:CDS | 40.0% | |
| GTAAAAGGGAAACTGAGGTT+GGG | + | chr1_3:34694273-34694292 | Msa0115770:CDS | 40.0% | |
| TGTGAGTGGAAATGAAGAGA+AGG | - | chr1_3:34694425-34694444 | None:intergenic | 40.0% | |
| ACAGAAAGCAACTTTGTGAG+TGG | - | chr1_3:34694439-34694458 | None:intergenic | 40.0% | |
| !! | AGCTTTAAGATATCTCCAGC+AGG | + | chr1_3:34694653-34694672 | Msa0115770:CDS | 40.0% |
| AGGCTATCTCTAAATCTCAG+AGG | + | chr1_3:34694673-34694692 | Msa0115770:CDS | 40.0% | |
| GGCTATCTCTAAATCTCAGA+GGG | + | chr1_3:34694674-34694693 | Msa0115770:CDS | 40.0% | |
| CTCTAAATCTCAGAGGGAAA+AGG | + | chr1_3:34694680-34694699 | Msa0115770:CDS | 40.0% | |
| TGTGGATCTTAGTTGAGCAA+AGG | - | chr1_3:34693779-34693798 | None:intergenic | 40.0% | |
| AGGCAGATATCTCTTTGATG+AGG | - | chr1_3:34693855-34693874 | None:intergenic | 40.0% | |
| AGATATCTGCCTGATTCTTC+TGG | + | chr1_3:34693863-34693882 | Msa0115770:CDS | 40.0% | |
| CTGTATATGCCAGAAGAATC+AGG | - | chr1_3:34693875-34693894 | None:intergenic | 40.0% | |
| TCCATCACAAAGTCAAAGCA+AGG | + | chr1_3:34693899-34693918 | Msa0115770:CDS | 40.0% | |
| ! | ACCTTGCTTTGACTTTGTGA+TGG | - | chr1_3:34693903-34693922 | None:intergenic | 40.0% |
| CACAAAGTCAAAGCAAGGTA+TGG | + | chr1_3:34693904-34693923 | Msa0115770:intron | 40.0% | |
| ! | GAGAGCATGGTATGTAATCT+TGG | + | chr1_3:34694084-34694103 | Msa0115770:intron | 40.0% |
| AGTAAAAGGGAAACTGAGGT+TGG | + | chr1_3:34694272-34694291 | Msa0115770:CDS | 40.0% | |
| GTAAAAGGGAAACTGAGGTT+GGG | + | chr1_3:34694273-34694292 | Msa0115770:CDS | 40.0% | |
| TGTGAGTGGAAATGAAGAGA+AGG | - | chr1_3:34694425-34694444 | None:intergenic | 40.0% | |
| ACAGAAAGCAACTTTGTGAG+TGG | - | chr1_3:34694439-34694458 | None:intergenic | 40.0% | |
| !! | AGCTTTAAGATATCTCCAGC+AGG | + | chr1_3:34694653-34694672 | Msa0115770:CDS | 40.0% |
| AGGCTATCTCTAAATCTCAG+AGG | + | chr1_3:34694673-34694692 | Msa0115770:CDS | 40.0% | |
| GGCTATCTCTAAATCTCAGA+GGG | + | chr1_3:34694674-34694693 | Msa0115770:CDS | 40.0% | |
| CTCTAAATCTCAGAGGGAAA+AGG | + | chr1_3:34694680-34694699 | Msa0115770:CDS | 40.0% | |
| ! | AAGGGTGACAGTTTTGCACA+TGG | + | chr1_3:34694056-34694075 | Msa0115770:CDS | 45.0% |
| TTGTAACCTGCAGTGAGACT+TGG | + | chr1_3:34694231-34694250 | Msa0115770:intron | 45.0% | |
| ATGAAGAGAAGGCCAGCTAT+AGG | - | chr1_3:34694414-34694433 | None:intergenic | 45.0% | |
| !!! | CTGTGGATGGTTTTGACTTC+TGG | + | chr1_3:34694604-34694623 | Msa0115770:CDS | 45.0% |
| GAGATTTAGAGATAGCCTGC+TGG | - | chr1_3:34694671-34694690 | None:intergenic | 45.0% | |
| ! | ATCTCAGAGGGAAAAGGTGT+AGG | + | chr1_3:34694686-34694705 | Msa0115770:CDS | 45.0% |
| ! | AAGGGTGACAGTTTTGCACA+TGG | + | chr1_3:34694056-34694075 | Msa0115770:CDS | 45.0% |
| TTGTAACCTGCAGTGAGACT+TGG | + | chr1_3:34694231-34694250 | Msa0115770:intron | 45.0% | |
| ATGAAGAGAAGGCCAGCTAT+AGG | - | chr1_3:34694414-34694433 | None:intergenic | 45.0% | |
| !!! | CTGTGGATGGTTTTGACTTC+TGG | + | chr1_3:34694604-34694623 | Msa0115770:CDS | 45.0% |
| GAGATTTAGAGATAGCCTGC+TGG | - | chr1_3:34694671-34694690 | None:intergenic | 45.0% | |
| TTTGGTCCAAGTCTCACTGC+AGG | - | chr1_3:34694240-34694259 | None:intergenic | 50.0% | |
| GTTGGGAGCCAGAATTCTTC+AGG | + | chr1_3:34694290-34694309 | Msa0115770:CDS | 50.0% | |
| GGAGCCAGAATTCTTCAGGT+TGG | + | chr1_3:34694294-34694313 | Msa0115770:CDS | 50.0% | |
| !! | GCCAGAATTCTTCAGGTTGG+CGG | + | chr1_3:34694297-34694316 | Msa0115770:CDS | 50.0% |
| !! | CCAGAATTCTTCAGGTTGGC+GGG | + | chr1_3:34694298-34694317 | Msa0115770:CDS | 50.0% |
| !! | CAGAATTCTTCAGGTTGGCG+GGG | + | chr1_3:34694299-34694318 | Msa0115770:CDS | 50.0% |
| ACCACATCAGGTCCTATAGC+TGG | + | chr1_3:34694399-34694418 | Msa0115770:CDS | 50.0% | |
| TTTGGTCCAAGTCTCACTGC+AGG | - | chr1_3:34694240-34694259 | None:intergenic | 50.0% | |
| GTTGGGAGCCAGAATTCTTC+AGG | + | chr1_3:34694290-34694309 | Msa0115770:CDS | 50.0% | |
| GGAGCCAGAATTCTTCAGGT+TGG | + | chr1_3:34694294-34694313 | Msa0115770:CDS | 50.0% | |
| !! | GCCAGAATTCTTCAGGTTGG+CGG | + | chr1_3:34694297-34694316 | Msa0115770:CDS | 50.0% |
| !! | CCAGAATTCTTCAGGTTGGC+GGG | + | chr1_3:34694298-34694317 | Msa0115770:CDS | 50.0% |
| !! | CAGAATTCTTCAGGTTGGCG+GGG | + | chr1_3:34694299-34694318 | Msa0115770:CDS | 50.0% |
| ACCACATCAGGTCCTATAGC+TGG | + | chr1_3:34694399-34694418 | Msa0115770:CDS | 50.0% | |
| CCCGCCAACCTGAAGAATTC+TGG | - | chr1_3:34694301-34694320 | None:intergenic | 55.0% | |
| GCCAGCTATAGGACCTGATG+TGG | - | chr1_3:34694403-34694422 | None:intergenic | 55.0% | |
| CCCGCCAACCTGAAGAATTC+TGG | - | chr1_3:34694301-34694320 | None:intergenic | 55.0% | |
| GCCAGCTATAGGACCTGATG+TGG | - | chr1_3:34694403-34694422 | None:intergenic | 55.0% | |
| GCACATGGAGTCCGAGAGCA+TGG | + | chr1_3:34694071-34694090 | Msa0115770:CDS | 60.0% | |
| GCACATGGAGTCCGAGAGCA+TGG | + | chr1_3:34694071-34694090 | Msa0115770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34693747 | 34694707 | 34693747 | ID=Msa0115770;Name=Msa0115770 |
| chr1_3 | mRNA | 34693747 | 34694707 | 34693747 | ID=Msa0115770-mRNA-1;Parent=Msa0115770;Name=Msa0115770-mRNA-1;_AED=0.29;_eAED=0.29;_QI=59|0.5|0.33|1|1|1|3|0|219 |
| chr1_3 | exon | 34693747 | 34693920 | 34693747 | ID=Msa0115770-mRNA-1:exon:11004;Parent=Msa0115770-mRNA-1 |
| chr1_3 | exon | 34694012 | 34694092 | 34694012 | ID=Msa0115770-mRNA-1:exon:11005;Parent=Msa0115770-mRNA-1 |
| chr1_3 | exon | 34694244 | 34694707 | 34694244 | ID=Msa0115770-mRNA-1:exon:11006;Parent=Msa0115770-mRNA-1 |
| chr1_3 | five_prime_UTR | 34693747 | 34693805 | 34693747 | ID=Msa0115770-mRNA-1:five_prime_utr;Parent=Msa0115770-mRNA-1 |
| chr1_3 | CDS | 34693806 | 34693920 | 34693806 | ID=Msa0115770-mRNA-1:cds;Parent=Msa0115770-mRNA-1 |
| chr1_3 | CDS | 34694012 | 34694092 | 34694012 | ID=Msa0115770-mRNA-1:cds;Parent=Msa0115770-mRNA-1 |
| chr1_3 | CDS | 34694244 | 34694707 | 34694244 | ID=Msa0115770-mRNA-1:cds;Parent=Msa0115770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
