AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204960 MtrunA17_Chr2g0295871 98.204 167 3 0 1 167 1 167 4.18e-118 330
Msa0204960 MtrunA17_Chr6g0479151 87.500 160 20 0 1 160 1 160 8.56e-99 281
Msa0204960 MtrunA17_Chr1g0192201 83.333 168 27 1 1 167 1 168 1.45e-94 271
Msa0204960 MtrunA17_Chr1g0192171 82.738 168 28 1 1 167 1 168 6.65e-94 269
Msa0204960 MtrunA17_Chr1g0192161 67.442 129 41 1 19 146 9 137 6.02e-51 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204960 AT3G16640.1 75.595 168 40 1 1 167 1 168 9.90e-92 264
Msa0204960 AT3G05540.1 79.167 168 34 1 1 167 1 168 3.23e-87 253

Find 122 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACCTGATTAAATTTAA+TGG 0.163949 2_1:+30948436 None:intergenic
ATAAGGTCGGTTGGAGAAAT+TGG 0.235200 2_1:-30950600 Msa0204960:five_prime_UTR
TAGAATGAATTTCTGAAATT+AGG 0.250342 2_1:-30950986 Msa0204960:five_prime_UTR
TACAGTGACGAGAGTGAAAA+AGG 0.263601 2_1:+30951607 None:intergenic
TTAGATATGGTTTGTGTTGT+TGG 0.269156 2_1:-30951090 Msa0204960:five_prime_UTR
TTTGACAAGAAGCAGTTTCT+TGG 0.278246 2_1:-30949065 Msa0204960:CDS
TTGTTTCTCTGCATCTAGTT+TGG 0.281317 2_1:+30949010 None:intergenic
AGGCTTTAGCTATGAGTCTT+AGG 0.282471 2_1:-30951190 Msa0204960:five_prime_UTR
CCATTCTCAATTTCCTTGTA+TGG 0.282615 2_1:+30949462 None:intergenic
AAAATCATCAACTTTGTTAT+GGG 0.303736 2_1:+30951423 None:intergenic
CTACTTTGCTTATGCTTTGA+AGG 0.304287 2_1:-30948610 Msa0204960:CDS
CCAACCTGATTAAATTTAAT+GGG 0.313635 2_1:+30948437 None:intergenic
TGTTTCTCTGCATCTAGTTT+GGG 0.318203 2_1:+30949011 None:intergenic
CATTCCCATTAAATTTAATC+AGG 0.326772 2_1:-30948441 Msa0204960:three_prime_UTR
GAGCTTGCCGAGCAAGTATT+TGG 0.326857 2_1:+30948956 None:intergenic
TGGAAATATGAGAGGTATAA+AGG 0.336158 2_1:-30950570 Msa0204960:five_prime_UTR
GTGTACTTTATTTATATCCT+AGG 0.357322 2_1:+30950529 None:intergenic
GTTTACCAGGATCTCCTTAC+CGG 0.366225 2_1:-30950388 Msa0204960:intron
TGGAATGTTGTGGGAGGTTG+AGG 0.377236 2_1:-30949442 Msa0204960:CDS
TGGTGTGCAGTGGGTTACTA+AGG 0.380033 2_1:-30949329 Msa0204960:intron
CATAAGGAATGTCAGTTGTC+TGG 0.382147 2_1:-30948379 Msa0204960:three_prime_UTR
ATTGATTTAGATTAGATTCA+AGG 0.385962 2_1:-30951329 Msa0204960:five_prime_UTR
TGTTGACGTATTCAGACTTC+AGG 0.392904 2_1:-30949215 Msa0204960:intron
GAATTCCTGTGCAGCTTTGT+TGG 0.394960 2_1:-30948705 Msa0204960:intron
TTGGAGAAATTGGGAATTTG+TGG 0.397038 2_1:-30950590 Msa0204960:five_prime_UTR
ATTGAAGAGTTAACTGTCTC+TGG 0.397853 2_1:+30950418 None:intergenic
AGTTTCTTGGCTTTGTTAAG+AGG 0.407714 2_1:-30949052 Msa0204960:CDS
TTCAATCATGTTGGTTTACC+AGG 0.411320 2_1:-30950401 Msa0204960:exon
TCTGATAACAGTTCCGAGTA+TGG 0.413688 2_1:+30951471 None:intergenic
CCCATTAAATTTAATCAGGT+TGG 0.415483 2_1:-30948437 Msa0204960:three_prime_UTR
TGAATTTCTGAAATTAGGCT+TGG 0.423242 2_1:-30950981 Msa0204960:five_prime_UTR
GGAATCATTTGCGTTACATT+GGG 0.437603 2_1:-30951169 Msa0204960:five_prime_UTR
AACTGCTTCTTGTCAAAAGC+AGG 0.440893 2_1:+30949071 None:intergenic
CGAGAGTTGAGACTATGATT+TGG 0.445273 2_1:-30948502 Msa0204960:three_prime_UTR
TGTTGATGACACAGCTGTTA+AGG 0.453047 2_1:-30949248 Msa0204960:CDS
CATTCTCAATTTCCTTGTAT+GGG 0.457372 2_1:+30949463 None:intergenic
AACTGTCTCTGGATCGCTCC+TGG 0.460431 2_1:+30950429 None:intergenic
TGTACTTTATTTATATCCTA+GGG 0.469434 2_1:+30950530 None:intergenic
ATCAACCCCTCTTCACTCTC+AGG 0.472927 2_1:-30950497 Msa0204960:five_prime_UTR
TCAAAGTCACGCAAAATGTA+AGG 0.475189 2_1:-30950670 Msa0204960:five_prime_UTR
TAAGCAAAGTAGAGAAATGT+TGG 0.475842 2_1:+30948621 None:intergenic
AAAACATTTATTGAAATGTA+GGG 0.476076 2_1:-30950701 Msa0204960:five_prime_UTR
GAATTTCTGAAATTAGGCTT+GGG 0.477672 2_1:-30950980 Msa0204960:five_prime_UTR
CTTGGTCTTTGCCTACTACA+AGG 0.480062 2_1:-30948658 Msa0204960:CDS
AGGAATCATTTGCGTTACAT+TGG 0.483784 2_1:-30951170 Msa0204960:five_prime_UTR
AGAGGTTCACTTACAATTGA+AGG 0.484964 2_1:+30948928 None:intergenic
GATCAACGGCGGCGACGGTA+TGG 0.485087 2_1:+30951512 None:intergenic
TAAGGTCGGTTGGAGAAATT+GGG 0.490749 2_1:-30950599 Msa0204960:five_prime_UTR
ATTTACCGGTAAGGAGATCC+TGG 0.491049 2_1:+30950383 None:intergenic
CTGTTTAAGAAGCACATTGA+GGG 0.491843 2_1:-30948984 Msa0204960:CDS
GTTGTGGGAGGTTGAGGGAA+AGG 0.495448 2_1:-30949436 Msa0204960:intron
GTCTTTGCCTACTACAAGGA+TGG 0.497771 2_1:-30948654 Msa0204960:CDS
GATGAAGATGACGATGATGC+TGG 0.499555 2_1:+30951730 None:intergenic
GCTGCGACTGCGACATCGTA+AGG 0.503727 2_1:+30951548 None:intergenic
CCATACAAGGAAATTGAGAA+TGG 0.509500 2_1:-30949462 Msa0204960:CDS
TGCTGAAGGTGGGGAAGATG+AGG 0.510874 2_1:-30949272 Msa0204960:CDS
CTGAGGATCAACGGCGGCGA+CGG 0.513176 2_1:+30951507 None:intergenic
TTTGAGGGGAAGATGGTGAT+GGG 0.514390 2_1:-30951026 Msa0204960:five_prime_UTR
ATTAGATTCAAGGAATCTGT+TGG 0.516348 2_1:-30951319 Msa0204960:five_prime_UTR
GTTGATTGAACTATGTCAGA+AGG 0.521401 2_1:+30951237 None:intergenic
GTTGATATTTGAGGGGAAGA+TGG 0.522739 2_1:-30951033 Msa0204960:five_prime_UTR
AATATTGTCATAAGGTCGGT+TGG 0.525803 2_1:-30950609 Msa0204960:five_prime_UTR
AGCAGCACCATCCTTGTAGT+AGG 0.529589 2_1:+30948647 None:intergenic
ATCCGACCACTCACCATACT+CGG 0.530454 2_1:-30951484 Msa0204960:five_prime_UTR
GGTGTGCAGTGGGTTACTAA+GGG 0.531247 2_1:-30949328 Msa0204960:intron
AGGGCTGAAGACGCAGAGGA+TGG 0.533366 2_1:+30951568 None:intergenic
GTCATCGAAAATAGACGGTA+AGG 0.533453 2_1:-30950762 Msa0204960:five_prime_UTR
CACGAACTCACTTTGCAACC+AGG 0.535097 2_1:-30950447 Msa0204960:five_prime_UTR
GGGCAGTGTAGAACTGTTGT+GGG 0.540841 2_1:+30948300 None:intergenic
ATTTGAGGGGAAGATGGTGA+TGG 0.545303 2_1:-30951027 Msa0204960:five_prime_UTR
AGGGCAGTGTAGAACTGTTG+TGG 0.546394 2_1:+30948299 None:intergenic
AGAAGTTAGATTTACCGGTA+AGG 0.548047 2_1:+30950374 None:intergenic
AGTTAACTCTTCAATCATGT+TGG 0.548862 2_1:-30950410 Msa0204960:exon
GGTGCTAACGCTTCTGCTGA+AGG 0.551924 2_1:-30949286 Msa0204960:CDS
TTTCTGAAATTAGGCTTGGG+AGG 0.554613 2_1:-30950977 Msa0204960:five_prime_UTR
GTCAGACTCTTACCCATACA+AGG 0.558314 2_1:-30949475 Msa0204960:CDS
GAGCGACCTGAGAGTGAAGA+GGG 0.563744 2_1:+30950491 None:intergenic
CTAACGCTTCTGCTGAAGGT+GGG 0.564433 2_1:-30949282 Msa0204960:CDS
GACGATGATGCTGGGTGGTG+TGG 0.566408 2_1:+30951739 None:intergenic
GGAATGTTGTGGGAGGTTGA+GGG 0.570757 2_1:-30949441 Msa0204960:CDS
GTTCGTGCGGTGAAACAACA+AGG 0.571140 2_1:+30950463 None:intergenic
ATGTTGATGTGGCATATTGT+GGG 0.572225 2_1:+30950797 None:intergenic
GCTAACGCTTCTGCTGAAGG+TGG 0.574811 2_1:-30949283 Msa0204960:CDS
CATGCATGATGATGGTAGCT+TGG 0.577740 2_1:-30948676 Msa0204960:CDS
GGGCTGAAGACGCAGAGGAT+GGG 0.577913 2_1:+30951569 None:intergenic
ATGGTGAGTGGTCGGATCTG+AGG 0.582178 2_1:+30951490 None:intergenic
GGAATTTGTGGAAATATGAG+AGG 0.584395 2_1:-30950578 Msa0204960:five_prime_UTR
GCCTAGTCATCGAAAATAGA+CGG 0.584684 2_1:-30950767 Msa0204960:five_prime_UTR
ATACTTGCTCGGCAAGCTCA+AGG 0.590353 2_1:-30948952 Msa0204960:CDS
TAACGCTTCTGCTGAAGGTG+GGG 0.592268 2_1:-30949281 Msa0204960:CDS
TGAGGTTACGGCGGCTACGA+AGG 0.593709 2_1:-30951370 Msa0204960:five_prime_UTR
AATTGAGAATGGAATGTTGT+GGG 0.596224 2_1:-30949451 Msa0204960:CDS
CTGCGACTGCGACATCGTAA+GGG 0.596973 2_1:+30951549 None:intergenic
TTCCGAGTATGGTGAGTGGT+CGG 0.601416 2_1:+30951482 None:intergenic
GGAGCAACCAAATACTTGCT+CGG 0.601945 2_1:-30948963 Msa0204960:CDS
GCTGTTTAAGAAGCACATTG+AGG 0.605157 2_1:-30948985 Msa0204960:CDS
AATGTTGATGTGGCATATTG+TGG 0.608451 2_1:+30950796 None:intergenic
GGAGTTGTTGAAGTAGACAT+TGG 0.611147 2_1:-30949307 Msa0204960:CDS
TGGTCGGATCTGAGGATCAA+CGG 0.611889 2_1:+30951498 None:intergenic
GGTGAGAGCATGCATGATGA+TGG 0.613806 2_1:-30948684 Msa0204960:CDS
GATTTCGTGCTTAAAACTTG+TGG 0.616803 2_1:-30951147 Msa0204960:five_prime_UTR
TCTCGTCACTGTAAGCGTGA+TGG 0.617179 2_1:-30951597 Msa0204960:five_prime_UTR
ATGAAGATGACGATGATGCT+GGG 0.622153 2_1:+30951731 None:intergenic
GCTGAAGGTGGGGAAGATGA+GGG 0.626588 2_1:-30949271 Msa0204960:CDS
TTTGTTTGGTGAGGTTACGG+CGG 0.630354 2_1:-30951379 Msa0204960:five_prime_UTR
AGATTGTTCTATGATGAAGA+AGG 0.630797 2_1:+30951653 None:intergenic
AGATGTCGTGCATAGAAGAG+TGG 0.632986 2_1:+30948247 None:intergenic
GCGGTGAAACAACAAGGGTA+CGG 0.639411 2_1:+30950469 None:intergenic
AGGCTAACGGAATGTTGATG+TGG 0.643472 2_1:+30950786 None:intergenic
GGAGCGACCTGAGAGTGAAG+AGG 0.646314 2_1:+30950490 None:intergenic
GTGGCATCTTGTGTGGACAC+AGG 0.653035 2_1:+30950835 None:intergenic
TGAGAATGGAATGTTGTGGG+AGG 0.663472 2_1:-30949448 Msa0204960:CDS
AGGCTTGGGAGGATGCAACA+TGG 0.682661 2_1:-30950966 Msa0204960:five_prime_UTR
CGTAAGGGCTGAAGACGCAG+AGG 0.688332 2_1:+30951564 None:intergenic
GGTTGCAAAGTGAGTTCGTG+CGG 0.700992 2_1:+30950450 None:intergenic
ACAGTTCCGAGTATGGTGAG+TGG 0.702877 2_1:+30951478 None:intergenic
AATTTGAAAGAAGAAACCCT+AGG 0.704412 2_1:-30950546 Msa0204960:five_prime_UTR
AGCGACCTGAGAGTGAAGAG+GGG 0.713708 2_1:+30950492 None:intergenic
AAATTGAGAATGGAATGTTG+TGG 0.718062 2_1:-30949452 Msa0204960:CDS
TTCGTGCGGTGAAACAACAA+GGG 0.729258 2_1:+30950464 None:intergenic
AAGATGACGATGATGCTGGG+TGG 0.771821 2_1:+30951734 None:intergenic
TCGGATCTGAGGATCAACGG+CGG 0.780069 2_1:+30951501 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATTTTATTTTA+AGG - chr2_1:30949060-30949079 Msa0204960:CDS 0.0%
!!! TTTTTATATATTTTTTTTTT+GGG + chr2_1:30949360-30949379 None:intergenic 0.0%
!!! ATTTTTATATATTTTTTTTT+TGG + chr2_1:30949361-30949380 None:intergenic 0.0%
!!! AATTTTATTTTAAGGAAAAA+TGG - chr2_1:30949068-30949087 Msa0204960:CDS 10.0%
!! TATATAAAAATATTGTCATA+AGG - chr2_1:30949370-30949389 Msa0204960:intron 10.0%
!! AAAAACATTTATTGAAATGT+AGG - chr2_1:30949285-30949304 Msa0204960:CDS 15.0%
!! AAAACATTTATTGAAATGTA+GGG - chr2_1:30949286-30949305 Msa0204960:CDS 15.0%
!! AGATCTAATAATAAAAAAAG+CGG + chr2_1:30949664-30949683 None:intergenic 15.0%
!!! TTCTTGTTATTTTAATTCAT+TGG - chr2_1:30949730-30949749 Msa0204960:intron 15.0%
!! TTTCAAAAAATACTATATCT+GGG + chr2_1:30949835-30949854 None:intergenic 15.0%
!!! TTTTCAAAAAATACTATATC+TGG + chr2_1:30949836-30949855 None:intergenic 15.0%
!! ATATAAAACAATATAACAGA+GGG + chr2_1:30950002-30950021 None:intergenic 15.0%
!! AATATAAAACAATATAACAG+AGG + chr2_1:30950003-30950022 None:intergenic 15.0%
!!! ATATCAATAAGTTCAAATTT+TGG - chr2_1:30950039-30950058 Msa0204960:intron 15.0%
!! AACAAAAACATGATAAATTA+GGG + chr2_1:30951443-30951462 None:intergenic 15.0%
!! AACTGAAGAAAAAAAAATGA+TGG + chr2_1:30948289-30948308 None:intergenic 20.0%
!!! AAAATCATCAACTTTGTTAT+GGG + chr2_1:30948567-30948586 None:intergenic 20.0%
!! AAAAATCATCAACTTTGTTA+TGG + chr2_1:30948568-30948587 None:intergenic 20.0%
!!! ATTGATTTAGATTAGATTCA+AGG - chr2_1:30948658-30948677 Msa0204960:CDS 20.0%
!!! GATTTCTTTTACAGTTAAAT+TGG - chr2_1:30948865-30948884 Msa0204960:intron 20.0%
!!! AATGTTTTGTTGATATTTGA+GGG - chr2_1:30948946-30948965 Msa0204960:CDS 20.0%
!!! TAGAATGAATTTCTGAAATT+AGG - chr2_1:30949001-30949020 Msa0204960:CDS 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG + chr2_1:30949344-30949363 None:intergenic 20.0%
!! TAAAAATATTGTCATAAGGT+CGG - chr2_1:30949374-30949393 Msa0204960:intron 20.0%
!!! TGTACTTTATTTATATCCTA+GGG + chr2_1:30949460-30949479 None:intergenic 20.0%
!! CAATAAGTAAAAGTCATAAT+TGG + chr2_1:30949702-30949721 None:intergenic 20.0%
!!! TTATTTTAATTCATTGGATC+TGG - chr2_1:30949736-30949755 Msa0204960:intron 20.0%
!!! GGTTTCTAGATTTTAAAAAT+CGG + chr2_1:30949902-30949921 None:intergenic 20.0%
!! TGCTTCACAAATAAAAATAA+TGG + chr2_1:30949923-30949942 None:intergenic 20.0%
!! AATTAAAAATGTATCATCCA+AGG + chr2_1:30950825-30950844 None:intergenic 20.0%
!!! AGTGTAATTATTTTGTTATG+TGG - chr2_1:30950875-30950894 Msa0204960:five_prime_UTR 20.0%
!!! TTTCATAATATTGTCATTTG+AGG - chr2_1:30951135-30951154 Msa0204960:five_prime_UTR 20.0%
!!! TGATTGTAATATTTGTCTTT+TGG - chr2_1:30951226-30951245 Msa0204960:five_prime_UTR 20.0%
!! ACAAAAACATGATAAATTAG+GGG + chr2_1:30951442-30951461 None:intergenic 20.0%
!! GAACAAAAACATGATAAATT+AGG + chr2_1:30951444-30951463 None:intergenic 20.0%
!!! TTGGATTCTGTTTTTAGATA+TGG - chr2_1:30948884-30948903 Msa0204960:intron 25.0%
!!! CAATGTTTTGTTGATATTTG+AGG - chr2_1:30948945-30948964 Msa0204960:CDS 25.0%
!!! ATGTTTTGTTGATATTTGAG+GGG - chr2_1:30948947-30948966 Msa0204960:CDS 25.0%
!! TTTTACTCTGTTAGTACAAT+TGG + chr2_1:30949252-30949271 None:intergenic 25.0%
! TACTAACAGAGTAAAAATGT+AGG - chr2_1:30949256-30949275 Msa0204960:CDS 25.0%
! ACTAACAGAGTAAAAATGTA+GGG - chr2_1:30949257-30949276 Msa0204960:CDS 25.0%
!! GTGTACTTTATTTATATCCT+AGG + chr2_1:30949461-30949480 None:intergenic 25.0%
!!! TTTTATTTGTGAAGCATAGT+AGG - chr2_1:30949927-30949946 Msa0204960:intron 25.0%
!! TTGAGGGAATTTTATGATTA+CGG - chr2_1:30950068-30950087 Msa0204960:intron 25.0%
!!! TCTGAATTAGTTCTAATAGA+AGG - chr2_1:30950127-30950146 Msa0204960:intron 25.0%
!!! CTGAATTAGTTCTAATAGAA+GGG - chr2_1:30950128-30950147 Msa0204960:intron 25.0%
! TAATGTAGTTATGTTACACT+TGG - chr2_1:30950607-30950626 Msa0204960:five_prime_UTR 25.0%
! AATGTAGTTATGTTACACTT+GGG - chr2_1:30950608-30950627 Msa0204960:five_prime_UTR 25.0%
!! AGCTAAAAACTATTTGCTTT+TGG - chr2_1:30950638-30950657 Msa0204960:five_prime_UTR 25.0%
! CATTCCCATTAAATTTAATC+AGG - chr2_1:30951546-30951565 Msa0204960:five_prime_UTR 25.0%
! CCAACCTGATTAAATTTAAT+GGG + chr2_1:30951553-30951572 None:intergenic 25.0%
! TCCAACCTGATTAAATTTAA+TGG + chr2_1:30951554-30951573 None:intergenic 25.0%
!! GATTTTTCTTGTGTTTCATA+AGG - chr2_1:30951592-30951611 Msa0204960:five_prime_UTR 25.0%
AGATTGTTCTATGATGAAGA+AGG + chr2_1:30948337-30948356 None:intergenic 30.0%
!!! TAGCTTTGTCTGATTTTGTT+TGG - chr2_1:30948594-30948613 Msa0204960:exon 30.0%
ATTAGATTCAAGGAATCTGT+TGG - chr2_1:30948668-30948687 Msa0204960:CDS 30.0%
TTTATCCAGCAAAAATTGTG+AGG - chr2_1:30948777-30948796 Msa0204960:intron 30.0%
! TTAGATATGGTTTGTGTTGT+TGG - chr2_1:30948897-30948916 Msa0204960:intron 30.0%
!! GATGGGAATTGAGTTATTTT+TGG - chr2_1:30948978-30948997 Msa0204960:CDS 30.0%
!! TGAATTTCTGAAATTAGGCT+TGG - chr2_1:30949006-30949025 Msa0204960:CDS 30.0%
!! GAATTTCTGAAATTAGGCTT+GGG - chr2_1:30949007-30949026 Msa0204960:CDS 30.0%
AAGATGCCACTCAAAAAATA+TGG - chr2_1:30949165-30949184 Msa0204960:intron 30.0%
AGATGCCACTCAAAAAATAT+GGG - chr2_1:30949166-30949185 Msa0204960:intron 30.0%
! TGGAAATATGAGAGGTATAA+AGG - chr2_1:30949417-30949436 Msa0204960:intron 30.0%
AATTTGAAAGAAGAAACCCT+AGG - chr2_1:30949441-30949460 Msa0204960:CDS 30.0%
AGTTAACTCTTCAATCATGT+TGG - chr2_1:30949577-30949596 Msa0204960:intron 30.0%
ATGAGAGAAGTTAGATTTAC+CGG + chr2_1:30949621-30949640 None:intergenic 30.0%
! TCAAATTTTGGATGAGATTG+AGG - chr2_1:30950051-30950070 Msa0204960:intron 30.0%
! CAAATTTTGGATGAGATTGA+GGG - chr2_1:30950052-30950071 Msa0204960:intron 30.0%
TTCTAATAGAAGGGCTAATT+CGG - chr2_1:30950137-30950156 Msa0204960:intron 30.0%
ACTGCATCATATTAACAAAC+AGG + chr2_1:30950175-30950194 None:intergenic 30.0%
! TGTTTGTTAATATGATGCAG+TGG - chr2_1:30950174-30950193 Msa0204960:intron 30.0%
TGAAATATGTTGTGAATGCT+TGG - chr2_1:30950438-30950457 Msa0204960:five_prime_UTR 30.0%
! CGATACATATCGTATTTTGT+AGG - chr2_1:30950477-30950496 Msa0204960:five_prime_UTR 30.0%
CATTCTCAATTTCCTTGTAT+GGG + chr2_1:30950527-30950546 None:intergenic 30.0%
AAATTGAGAATGGAATGTTG+TGG - chr2_1:30950535-30950554 Msa0204960:five_prime_UTR 30.0%
AATTGAGAATGGAATGTTGT+GGG - chr2_1:30950536-30950555 Msa0204960:five_prime_UTR 30.0%
ATGTAGTTATGTTACACTTG+GGG - chr2_1:30950609-30950628 Msa0204960:five_prime_UTR 30.0%
TATCATCCAAGGATATAAAG+AGG + chr2_1:30950814-30950833 None:intergenic 30.0%
!! AATTACACTCTGAAATCAAG+TGG + chr2_1:30950864-30950883 None:intergenic 30.0%
! TGTTATGTGGTGACTTTTAT+AGG - chr2_1:30950888-30950907 Msa0204960:five_prime_UTR 30.0%
TAAGCAAAGTAGAGAAATGT+TGG + chr2_1:30951369-30951388 None:intergenic 30.0%
CCCATTAAATTTAATCAGGT+TGG - chr2_1:30951550-30951569 Msa0204960:five_prime_UTR 30.0%
!! AAAGCACTTTTAAATGCAGA+GGG + chr2_1:30951710-30951729 None:intergenic 30.0%
!!! AAAAGCACTTTTAAATGCAG+AGG + chr2_1:30951711-30951730 None:intergenic 30.0%
!! TTTTGCTATAGCAATGGTGT+CGG + chr2_1:30948543-30948562 None:intergenic 35.0%
!! ATGGGTTTTTGCTATAGCAA+TGG + chr2_1:30948549-30948568 None:intergenic 35.0%
!! TTGTCTGATTTTGTTTGGTG+AGG - chr2_1:30948599-30948618 Msa0204960:CDS 35.0%
!! GATTTTGTTTGGTGAGGTTA+CGG - chr2_1:30948605-30948624 Msa0204960:CDS 35.0%
GTTGATTGAACTATGTCAGA+AGG + chr2_1:30948753-30948772 None:intergenic 35.0%
! TAAAGCCTCACAATTTTTGC+TGG + chr2_1:30948785-30948804 None:intergenic 35.0%
AGGAATCATTTGCGTTACAT+TGG - chr2_1:30948817-30948836 Msa0204960:intron 35.0%
GGAATCATTTGCGTTACATT+GGG - chr2_1:30948818-30948837 Msa0204960:intron 35.0%
GATTTCGTGCTTAAAACTTG+TGG - chr2_1:30948840-30948859 Msa0204960:intron 35.0%
GATGCCACTCAAAAAATATG+GGG - chr2_1:30949167-30949186 Msa0204960:intron 35.0%
ATGTTGATGTGGCATATTGT+GGG + chr2_1:30949193-30949212 None:intergenic 35.0%
AATGTTGATGTGGCATATTG+TGG + chr2_1:30949194-30949213 None:intergenic 35.0%
! ATTTTCGATGACTAGGCTAA+CGG + chr2_1:30949217-30949236 None:intergenic 35.0%
TCAAAGTCACGCAAAATGTA+AGG - chr2_1:30949317-30949336 Msa0204960:CDS 35.0%
AATATTGTCATAAGGTCGGT+TGG - chr2_1:30949378-30949397 Msa0204960:intron 35.0%
TTGGAGAAATTGGGAATTTG+TGG - chr2_1:30949397-30949416 Msa0204960:intron 35.0%
GGAATTTGTGGAAATATGAG+AGG - chr2_1:30949409-30949428 Msa0204960:intron 35.0%
ATTGAAGAGTTAACTGTCTC+TGG + chr2_1:30949572-30949591 None:intergenic 35.0%
!! TTCAATCATGTTGGTTTACC+AGG - chr2_1:30949586-30949605 Msa0204960:intron 35.0%
AGAAGTTAGATTTACCGGTA+AGG + chr2_1:30949616-30949635 None:intergenic 35.0%
! CATATTCTGATTTTCTGTGC+TGG - chr2_1:30949800-30949819 Msa0204960:intron 35.0%
TAACCAATAAAACAGAGCAC+AGG + chr2_1:30949977-30949996 None:intergenic 35.0%
TCTAATAGAAGGGCTAATTC+GGG - chr2_1:30950138-30950157 Msa0204960:intron 35.0%
AATTGAGCAATTCGAACCAT+AGG - chr2_1:30950200-30950219 Msa0204960:intron 35.0%
TCGAACCATAGGATTAAGAT+CGG - chr2_1:30950211-30950230 Msa0204960:intron 35.0%
CGAACTCAATCCAAACAAAT+TGG - chr2_1:30950295-30950314 Msa0204960:intron 35.0%
CTCAATCCAAACAAATTGGT+TGG - chr2_1:30950299-30950318 Msa0204960:intron 35.0%
CCATTCTCAATTTCCTTGTA+TGG + chr2_1:30950528-30950547 None:intergenic 35.0%
CCATACAAGGAAATTGAGAA+TGG - chr2_1:30950525-30950544 Msa0204960:five_prime_UTR 35.0%
!! CAAGGATATAAAGAGGTGTT+TGG + chr2_1:30950807-30950826 None:intergenic 35.0%
CAAACACCTCTTTATATCCT+TGG - chr2_1:30950805-30950824 Msa0204960:five_prime_UTR 35.0%
TTTGACAAGAAGCAGTTTCT+TGG - chr2_1:30950922-30950941 Msa0204960:five_prime_UTR 35.0%
!! AGTTTCTTGGCTTTGTTAAG+AGG - chr2_1:30950935-30950954 Msa0204960:five_prime_UTR 35.0%
! TGTTTCTCTGCATCTAGTTT+GGG + chr2_1:30950979-30950998 None:intergenic 35.0%
! TTGTTTCTCTGCATCTAGTT+TGG + chr2_1:30950980-30950999 None:intergenic 35.0%
! CTGTTTAAGAAGCACATTGA+GGG - chr2_1:30951003-30951022 Msa0204960:five_prime_UTR 35.0%
AGAGGTTCACTTACAATTGA+AGG + chr2_1:30951062-30951081 None:intergenic 35.0%
TTCTTGAATGTGCATGATAG+AGG + chr2_1:30951080-30951099 None:intergenic 35.0%
TCTATCATGCACATTCAAGA+AGG - chr2_1:30951079-30951098 Msa0204960:five_prime_UTR 35.0%
CTACTTTGCTTATGCTTTGA+AGG - chr2_1:30951377-30951396 Msa0204960:five_prime_UTR 35.0%
ATGAAGATGACGATGATGCT+GGG + chr2_1:30948259-30948278 None:intergenic 40.0%
ACAGTGACGAGAGTGAAAAA+GGG + chr2_1:30948382-30948401 None:intergenic 40.0%
TACAGTGACGAGAGTGAAAA+AGG + chr2_1:30948383-30948402 None:intergenic 40.0%
TCTGATAACAGTTCCGAGTA+TGG + chr2_1:30948519-30948538 None:intergenic 40.0%
! AGGCTTTAGCTATGAGTCTT+AGG - chr2_1:30948797-30948816 Msa0204960:intron 40.0%
GTTGATATTTGAGGGGAAGA+TGG - chr2_1:30948954-30948973 Msa0204960:CDS 40.0%
!! TTTCTGAAATTAGGCTTGGG+AGG - chr2_1:30949010-30949029 Msa0204960:CDS 40.0%
!!! TTTTTGAGTGGCATCTTGTG+TGG + chr2_1:30949162-30949181 None:intergenic 40.0%
GCCTAGTCATCGAAAATAGA+CGG - chr2_1:30949220-30949239 Msa0204960:CDS 40.0%
! ACCGTCTATTTTCGATGACT+AGG + chr2_1:30949224-30949243 None:intergenic 40.0%
GTCATCGAAAATAGACGGTA+AGG - chr2_1:30949225-30949244 Msa0204960:CDS 40.0%
ATAAGGTCGGTTGGAGAAAT+TGG - chr2_1:30949387-30949406 Msa0204960:intron 40.0%
TAAGGTCGGTTGGAGAAATT+GGG - chr2_1:30949388-30949407 Msa0204960:intron 40.0%
AAAGCGGAAAATTGAAGCGA+TGG + chr2_1:30949648-30949667 None:intergenic 40.0%
! TTGCCTGTGCTCTGTTTTAT+TGG - chr2_1:30949971-30949990 Msa0204960:intron 40.0%
CTAATAGAAGGGCTAATTCG+GGG - chr2_1:30950139-30950158 Msa0204960:intron 40.0%
ACCATAGGATTAAGATCGGA+TGG - chr2_1:30950215-30950234 Msa0204960:intron 40.0%
! CTGTAGCCAACCAATTTGTT+TGG + chr2_1:30950308-30950327 None:intergenic 40.0%
! CAAACAAATTGGTTGGCTAC+AGG - chr2_1:30950306-30950325 Msa0204960:intron 40.0%
!! TATTTGCTTTTGGTGTGCAG+TGG - chr2_1:30950648-30950667 Msa0204960:five_prime_UTR 40.0%
!! ATTTGCTTTTGGTGTGCAGT+GGG - chr2_1:30950649-30950668 Msa0204960:five_prime_UTR 40.0%
GGAGTTGTTGAAGTAGACAT+TGG - chr2_1:30950680-30950699 Msa0204960:five_prime_UTR 40.0%
!! TGTTGATGACACAGCTGTTA+AGG - chr2_1:30950739-30950758 Msa0204960:five_prime_UTR 40.0%
TGTTGACGTATTCAGACTTC+AGG - chr2_1:30950772-30950791 Msa0204960:five_prime_UTR 40.0%
! ACGTATTCAGACTTCAGGTT+AGG - chr2_1:30950777-30950796 Msa0204960:five_prime_UTR 40.0%
AACTGCTTCTTGTCAAAAGC+AGG + chr2_1:30950919-30950938 None:intergenic 40.0%
! GCTGTTTAAGAAGCACATTG+AGG - chr2_1:30951002-30951021 Msa0204960:five_prime_UTR 40.0%
CGAGAGTTGAGACTATGATT+TGG - chr2_1:30951485-30951504 Msa0204960:five_prime_UTR 40.0%
CATAAGGAATGTCAGTTGTC+TGG - chr2_1:30951608-30951627 Msa0204960:five_prime_UTR 40.0%
GATGAAGATGACGATGATGC+TGG + chr2_1:30948260-30948279 None:intergenic 45.0%
CAGTGACGAGAGTGAAAAAG+GGG + chr2_1:30948381-30948400 None:intergenic 45.0%
! TTTGTTTGGTGAGGTTACGG+CGG - chr2_1:30948608-30948627 Msa0204960:CDS 45.0%
ATTTGAGGGGAAGATGGTGA+TGG - chr2_1:30948960-30948979 Msa0204960:CDS 45.0%
TTTGAGGGGAAGATGGTGAT+GGG - chr2_1:30948961-30948980 Msa0204960:CDS 45.0%
!!! TGGGCCCCATATTTTTTGAG+TGG + chr2_1:30949174-30949193 None:intergenic 45.0%
AGGCTAACGGAATGTTGATG+TGG + chr2_1:30949204-30949223 None:intergenic 45.0%
TTCGTGCGGTGAAACAACAA+GGG + chr2_1:30949526-30949545 None:intergenic 45.0%
GTTTACCAGGATCTCCTTAC+CGG - chr2_1:30949599-30949618 Msa0204960:intron 45.0%
ATTTACCGGTAAGGAGATCC+TGG + chr2_1:30949607-30949626 None:intergenic 45.0%
GCCATCCGATCTTAATCCTA+TGG + chr2_1:30950219-30950238 None:intergenic 45.0%
GTCAGACTCTTACCCATACA+AGG - chr2_1:30950512-30950531 Msa0204960:five_prime_UTR 45.0%
TGAGAATGGAATGTTGTGGG+AGG - chr2_1:30950539-30950558 Msa0204960:five_prime_UTR 45.0%
GGAGCAACCAAATACTTGCT+CGG - chr2_1:30951024-30951043 Msa0204960:five_prime_UTR 45.0%
! GAATTCCTGTGCAGCTTTGT+TGG - chr2_1:30951282-30951301 Msa0204960:five_prime_UTR 45.0%
!! CATGCATGATGATGGTAGCT+TGG - chr2_1:30951311-30951330 Msa0204960:five_prime_UTR 45.0%
! CTTGGTCTTTGCCTACTACA+AGG - chr2_1:30951329-30951348 Msa0204960:five_prime_UTR 45.0%
GTCTTTGCCTACTACAAGGA+TGG - chr2_1:30951333-30951352 Msa0204960:five_prime_UTR 45.0%
AGATGTCGTGCATAGAAGAG+TGG + chr2_1:30951743-30951762 None:intergenic 45.0%
AAGATGACGATGATGCTGGG+TGG + chr2_1:30948256-30948275 None:intergenic 50.0%
TCTCGTCACTGTAAGCGTGA+TGG - chr2_1:30948390-30948409 Msa0204960:three_prime_UTR 50.0%
TGGTCGGATCTGAGGATCAA+CGG + chr2_1:30948492-30948511 None:intergenic 50.0%
ATCCGACCACTCACCATACT+CGG - chr2_1:30948503-30948522 Msa0204960:three_prime_UTR 50.0%
TTCCGAGTATGGTGAGTGGT+CGG + chr2_1:30948508-30948527 None:intergenic 50.0%
ACAGTTCCGAGTATGGTGAG+TGG + chr2_1:30948512-30948531 None:intergenic 50.0%
ATCAACCCCTCTTCACTCTC+AGG - chr2_1:30949490-30949509 Msa0204960:CDS 50.0%
GCGGTGAAACAACAAGGGTA+CGG + chr2_1:30949521-30949540 None:intergenic 50.0%
GTTCGTGCGGTGAAACAACA+AGG + chr2_1:30949527-30949546 None:intergenic 50.0%
GGTTGCAAAGTGAGTTCGTG+CGG + chr2_1:30949540-30949559 None:intergenic 50.0%
CACGAACTCACTTTGCAACC+AGG - chr2_1:30949540-30949559 Msa0204960:intron 50.0%
TGGAATGTTGTGGGAGGTTG+AGG - chr2_1:30950545-30950564 Msa0204960:five_prime_UTR 50.0%
GGAATGTTGTGGGAGGTTGA+GGG - chr2_1:30950546-30950565 Msa0204960:five_prime_UTR 50.0%
!! TGGTGTGCAGTGGGTTACTA+AGG - chr2_1:30950658-30950677 Msa0204960:five_prime_UTR 50.0%
!! GGTGTGCAGTGGGTTACTAA+GGG - chr2_1:30950659-30950678 Msa0204960:five_prime_UTR 50.0%
CTAACGCTTCTGCTGAAGGT+GGG - chr2_1:30950705-30950724 Msa0204960:five_prime_UTR 50.0%
TAACGCTTCTGCTGAAGGTG+GGG - chr2_1:30950706-30950725 Msa0204960:five_prime_UTR 50.0%
GAGCTTGCCGAGCAAGTATT+TGG + chr2_1:30951034-30951053 None:intergenic 50.0%
ATACTTGCTCGGCAAGCTCA+AGG - chr2_1:30951035-30951054 Msa0204960:five_prime_UTR 50.0%
TCTCACCAACAAAGCTGCAC+AGG + chr2_1:30951290-30951309 None:intergenic 50.0%
! GGTGAGAGCATGCATGATGA+TGG - chr2_1:30951303-30951322 Msa0204960:five_prime_UTR 50.0%
AGCAGCACCATCCTTGTAGT+AGG + chr2_1:30951343-30951362 None:intergenic 50.0%
GGGCAGTGTAGAACTGTTGT+GGG + chr2_1:30951690-30951709 None:intergenic 50.0%
AGGGCAGTGTAGAACTGTTG+TGG + chr2_1:30951691-30951710 None:intergenic 50.0%
CTGCGACTGCGACATCGTAA+GGG + chr2_1:30948441-30948460 None:intergenic 55.0%
TCGGATCTGAGGATCAACGG+CGG + chr2_1:30948489-30948508 None:intergenic 55.0%
ATGGTGAGTGGTCGGATCTG+AGG + chr2_1:30948500-30948519 None:intergenic 55.0%
AGGCTTGGGAGGATGCAACA+TGG - chr2_1:30949021-30949040 Msa0204960:CDS 55.0%
GTGGCATCTTGTGTGGACAC+AGG + chr2_1:30949155-30949174 None:intergenic 55.0%
AGCGACCTGAGAGTGAAGAG+GGG + chr2_1:30949498-30949517 None:intergenic 55.0%
GAGCGACCTGAGAGTGAAGA+GGG + chr2_1:30949499-30949518 None:intergenic 55.0%
AACTGTCTCTGGATCGCTCC+TGG + chr2_1:30949561-30949580 None:intergenic 55.0%
GTTGTGGGAGGTTGAGGGAA+AGG - chr2_1:30950551-30950570 Msa0204960:five_prime_UTR 55.0%
GGTGCTAACGCTTCTGCTGA+AGG - chr2_1:30950701-30950720 Msa0204960:five_prime_UTR 55.0%
GCTAACGCTTCTGCTGAAGG+TGG - chr2_1:30950704-30950723 Msa0204960:five_prime_UTR 55.0%
TGCTGAAGGTGGGGAAGATG+AGG - chr2_1:30950715-30950734 Msa0204960:five_prime_UTR 55.0%
GCTGAAGGTGGGGAAGATGA+GGG - chr2_1:30950716-30950735 Msa0204960:five_prime_UTR 55.0%
GACGATGATGCTGGGTGGTG+TGG + chr2_1:30948251-30948270 None:intergenic 60.0%
GGGCTGAAGACGCAGAGGAT+GGG + chr2_1:30948421-30948440 None:intergenic 60.0%
AGGGCTGAAGACGCAGAGGA+TGG + chr2_1:30948422-30948441 None:intergenic 60.0%
CGTAAGGGCTGAAGACGCAG+AGG + chr2_1:30948426-30948445 None:intergenic 60.0%
GCTGCGACTGCGACATCGTA+AGG + chr2_1:30948442-30948461 None:intergenic 60.0%
TGAGGTTACGGCGGCTACGA+AGG - chr2_1:30948617-30948636 Msa0204960:CDS 60.0%
GGAGCGACCTGAGAGTGAAG+AGG + chr2_1:30949500-30949519 None:intergenic 60.0%
GATCAACGGCGGCGACGGTA+TGG + chr2_1:30948478-30948497 None:intergenic 65.0%
CTGAGGATCAACGGCGGCGA+CGG + chr2_1:30948483-30948502 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 30948243 30951766 30948243 ID=Msa0204960;Name=Msa0204960
chr2_1 mRNA 30948243 30951766 30948243 ID=Msa0204960-mRNA-1;Parent=Msa0204960;Name=Msa0204960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1350|1|1|1|1|1|5|353|167
chr2_1 exon 30948243 30948713 30948243 ID=Msa0204960-mRNA-1:exon:10956;Parent=Msa0204960-mRNA-1
chr2_1 exon 30948942 30949099 30948942 ID=Msa0204960-mRNA-1:exon:10955;Parent=Msa0204960-mRNA-1
chr2_1 exon 30949216 30949341 30949216 ID=Msa0204960-mRNA-1:exon:10954;Parent=Msa0204960-mRNA-1
chr2_1 exon 30949437 30949510 30949437 ID=Msa0204960-mRNA-1:exon:10953;Parent=Msa0204960-mRNA-1
chr2_1 exon 30950389 30951766 30950389 ID=Msa0204960-mRNA-1:exon:10952;Parent=Msa0204960-mRNA-1
chr2_1 five_prime_UTR 30950417 30951766 30950417 ID=Msa0204960-mRNA-1:five_prime_utr;Parent=Msa0204960-mRNA-1
chr2_1 CDS 30950389 30950416 30950389 ID=Msa0204960-mRNA-1:cds;Parent=Msa0204960-mRNA-1
chr2_1 CDS 30949437 30949510 30949437 ID=Msa0204960-mRNA-1:cds;Parent=Msa0204960-mRNA-1
chr2_1 CDS 30949216 30949341 30949216 ID=Msa0204960-mRNA-1:cds;Parent=Msa0204960-mRNA-1
chr2_1 CDS 30948942 30949099 30948942 ID=Msa0204960-mRNA-1:cds;Parent=Msa0204960-mRNA-1
chr2_1 CDS 30948596 30948713 30948596 ID=Msa0204960-mRNA-1:cds;Parent=Msa0204960-mRNA-1
chr2_1 three_prime_UTR 30948243 30948595 30948243 ID=Msa0204960-mRNA-1:three_prime_utr;Parent=Msa0204960-mRNA-1
Gene Sequence

>Msa0204960

ATGTTGGTTTACCAGGATCTCCTTACCGGTGATGAGCTTCTGTCAGACTCTTACCCATACAAGGAAATTGAGAATGGAATGTTGTGGGAGGTTGAGGGAAAGTGGGTTACTAAGGGAGTTGTTGAAGTAGACATTGGTGCTAACGCTTCTGCTGAAGGTGGGGAAGATGAGGGTGTTGATGACACAGCTGTTAAGGTTGTCGACATTGTTGACGTATTCAGACTTCAGGAACAACCTGCTTTTGACAAGAAGCAGTTTCTTGGCTTTGTTAAGAGGTATATCAAGTTGCTGACACCCAAACTAGATGCAGAGAAACAAGAGCTGTTTAAGAAGCACATTGAGGGAGCAACCAAATACTTGCTCGGCAAGCTCAAGGACCTTCAATTCTTTGTTGGTGAGAGCATGCATGATGATGGTAGCTTGGTCTTTGCCTACTACAAGGATGGTGCTGCTGATCCAACATTTCTCTACTTTGCTTATGCTTTGAAGGAAATCAAGTGTTAA

Protein sequence

>Msa0204960

MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDTAVKVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC*