Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054920 | XP_013465831.1 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 2.16e-44 | 159 |
| Msa0054920 | XP_013465831.1 | 95.312 | 128 | 5 | 1 | 78 | 205 | 136 | 262 | 3.13e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054920 | A0A072VDM2 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 1.03e-44 | 159 |
| Msa0054920 | A0A072VDM2 | 95.312 | 128 | 5 | 1 | 78 | 205 | 136 | 262 | 1.50e-84 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0054920 | -0.819439 | 1.160665e-52 | -8.615850e-47 |
| Msa0006280 | Msa0054920 | 0.806189 | 9.283068e-50 | -8.615850e-47 |
| Msa0010110 | Msa0054920 | 0.822985 | 1.767256e-53 | -8.615850e-47 |
| Msa0026630 | Msa0054920 | 0.811357 | 7.290407e-51 | -8.615850e-47 |
| Msa0046110 | Msa0054920 | -0.811343 | 7.341795e-51 | -8.615850e-47 |
| Msa0054920 | Msa0059840 | 0.812787 | 3.555716e-51 | -8.615850e-47 |
| Msa0054920 | Msa0089730 | 0.805338 | 1.400995e-49 | -8.615850e-47 |
| Msa0054920 | Msa0090510 | 0.819086 | 1.397213e-52 | -8.615850e-47 |
| Msa0054920 | Msa0094710 | 0.808496 | 3.009451e-50 | -8.615850e-47 |
| Msa0054920 | Msa0100290 | 0.953069 | 6.159542e-111 | -8.615850e-47 |
| Msa0054920 | Msa0104670 | 0.829836 | 4.118436e-55 | -8.615850e-47 |
| Msa0054920 | Msa0106710 | 0.802998 | 4.300125e-49 | -8.615850e-47 |
| Msa0054920 | Msa0115770 | 0.808522 | 2.972246e-50 | -8.615850e-47 |
| Msa0054920 | Msa0117520 | 0.809282 | 2.043600e-50 | -8.615850e-47 |
| Msa0054920 | Msa0138020 | 0.807480 | 4.951686e-50 | -8.615850e-47 |
| Msa0054920 | Msa0144530 | 0.952525 | 2.007317e-110 | -8.615850e-47 |
| Msa0054920 | Msa0150860 | 0.825476 | 4.590738e-54 | -8.615850e-47 |
| Msa0054920 | Msa0160960 | 0.817693 | 2.889397e-52 | -8.615850e-47 |
| Msa0054920 | Msa0179190 | 0.801345 | 9.409729e-49 | -8.615850e-47 |
| Msa0054920 | Msa0218370 | 0.811123 | 8.194673e-51 | -8.615850e-47 |
| Msa0054920 | Msa0220400 | -0.818466 | 1.931294e-52 | -8.615850e-47 |
| Msa0054920 | Msa0231920 | 0.808134 | 3.595483e-50 | -8.615850e-47 |
| Msa0054920 | Msa0232020 | 0.811664 | 6.252863e-51 | -8.615850e-47 |
| Msa0054920 | Msa0232090 | 0.803228 | 3.853728e-49 | -8.615850e-47 |
| Msa0054920 | Msa0241140 | 0.824478 | 7.896695e-54 | -8.615850e-47 |
| Msa0054920 | Msa0271220 | 0.807903 | 4.026318e-50 | -8.615850e-47 |
| Msa0054920 | Msa0278580 | 0.806233 | 9.087783e-50 | -8.615850e-47 |
| Msa0054920 | Msa0287780 | 0.807319 | 5.357713e-50 | -8.615850e-47 |
| Msa0054920 | Msa0287870 | 0.804990 | 1.656341e-49 | -8.615850e-47 |
| Msa0054920 | Msa0295460 | -0.819666 | 1.030197e-52 | -8.615850e-47 |
| Msa0054920 | Msa0296050 | -0.815158 | 1.066684e-51 | -8.615850e-47 |
| Msa0054920 | Msa0333970 | -0.810890 | 9.202974e-51 | -8.615850e-47 |
| Msa0054920 | Msa0374340 | -0.809903 | 1.503254e-50 | -8.615850e-47 |
| Msa0054920 | Msa0380400 | -0.806567 | 7.725401e-50 | -8.615850e-47 |
| Msa0054920 | Msa0401560 | 0.800189 | 1.619722e-48 | -8.615850e-47 |
| Msa0054920 | Msa0403470 | -0.816373 | 5.719324e-52 | -8.615850e-47 |
| Msa0054920 | Msa0403480 | -0.802348 | 5.854169e-49 | -8.615850e-47 |
| Msa0054920 | Msa0428200 | 0.819973 | 8.768106e-53 | -8.615850e-47 |
| Msa0054920 | Msa0476170 | -0.824714 | 6.951275e-54 | -8.615850e-47 |
| Msa0054920 | Msa0500470 | 0.801597 | 8.351647e-49 | -8.615850e-47 |
| Msa0054920 | Msa0501380 | 0.811255 | 7.671343e-51 | -8.615850e-47 |
| Msa0054920 | Msa0518170 | 0.804731 | 1.876257e-49 | -8.615850e-47 |
| Msa0054920 | Msa0519160 | 0.820919 | 5.317755e-53 | -8.615850e-47 |
| Msa0054920 | Msa0545050 | 0.841934 | 3.514846e-58 | -8.615850e-47 |
| Msa0054920 | Msa0576120 | -0.835778 | 1.376375e-56 | -8.615850e-47 |
| Msa0054920 | Msa0583360 | -0.810215 | 1.287677e-50 | -8.615850e-47 |
| Msa0054920 | Msa0594050 | 0.801297 | 9.621837e-49 | -8.615850e-47 |
| Msa0054920 | Msa0600590 | 0.814559 | 1.448430e-51 | -8.615850e-47 |
| Msa0054920 | Msa0624060 | 0.801295 | 9.630419e-49 | -8.615850e-47 |
| Msa0054920 | Msa0641130 | 0.830841 | 2.339714e-55 | -8.615850e-47 |
| Msa0054920 | Msa0654900 | 0.816867 | 4.432423e-52 | -8.615850e-47 |
| Msa0054920 | Msa0679030 | 0.821206 | 4.566341e-53 | -8.615850e-47 |
| Msa0054920 | Msa0685090 | 0.802165 | 6.385997e-49 | -8.615850e-47 |
| Msa0054920 | Msa0698450 | 0.801559 | 8.502895e-49 | -8.615850e-47 |
| Msa0054920 | Msa0698460 | 0.801158 | 1.027272e-48 | -8.615850e-47 |
| Msa0054920 | Msa0733010 | 0.818538 | 1.860794e-52 | -8.615850e-47 |
| Msa0054920 | Msa0738030 | 0.800334 | 1.513499e-48 | -8.615850e-47 |
| Msa0054920 | Msa0742430 | 0.800751 | 1.244089e-48 | -8.615850e-47 |
| Msa0054920 | Msa0769300 | 0.812436 | 4.243909e-51 | -8.615850e-47 |
| Msa0054920 | Msa0771950 | 0.804548 | 2.049161e-49 | -8.615850e-47 |
| Msa0054920 | Msa0772280 | 0.832151 | 1.113316e-55 | -8.615850e-47 |
| Msa0054920 | Msa0795340 | 0.800541 | 1.372997e-48 | -8.615850e-47 |
| Msa0054920 | Msa0809940 | 0.819240 | 1.288334e-52 | -8.615850e-47 |
| Msa0054920 | Msa0810440 | 0.810067 | 1.385664e-50 | -8.615850e-47 |
| Msa0054920 | Msa0823540 | 0.848069 | 7.753203e-60 | -8.615850e-47 |
| Msa0054920 | Msa0857940 | 0.817060 | 4.009783e-52 | -8.615850e-47 |
| Msa0054920 | Msa0862620 | 0.841406 | 4.843742e-58 | -8.615850e-47 |
| Msa0054920 | Msa0894710 | 0.810036 | 1.407109e-50 | -8.615850e-47 |
| Msa0054920 | Msa0921420 | 0.801230 | 9.931736e-49 | -8.615850e-47 |
| Msa0054920 | Msa0968470 | -0.802133 | 6.483999e-49 | -8.615850e-47 |
| Msa0054920 | Msa0975320 | 0.829871 | 4.038603e-55 | -8.615850e-47 |
| Msa0054920 | Msa1011250 | 0.810649 | 1.037592e-50 | -8.615850e-47 |
| Msa0054920 | Msa1031460 | 0.802402 | 5.706762e-49 | -8.615850e-47 |
| Msa0054920 | Msa1070540 | 0.815667 | 8.218479e-52 | -8.615850e-47 |
| Msa0054920 | Msa1085610 | -0.806140 | 9.503470e-50 | -8.615850e-47 |
| Msa0054920 | Msa1089460 | 0.802920 | 4.462428e-49 | -8.615850e-47 |
| Msa0054920 | Msa1101240 | 0.812788 | 3.554548e-51 | -8.615850e-47 |
| Msa0054920 | Msa1108710 | 0.809673 | 1.684979e-50 | -8.615850e-47 |
| Msa0054920 | Msa1122150 | 0.823874 | 1.095100e-53 | -8.615850e-47 |
| Msa0054920 | Msa1158390 | 0.821395 | 4.129850e-53 | -8.615850e-47 |
| Msa0054920 | Msa1160560 | 0.834796 | 2.436530e-56 | -8.615850e-47 |
| Msa0054920 | Msa1171140 | 0.802020 | 6.839873e-49 | -8.615850e-47 |
| Msa0054920 | Msa1179070 | 0.816869 | 4.427487e-52 | -8.615850e-47 |
| Msa0054920 | Msa1183140 | 0.846468 | 2.131174e-59 | -8.615850e-47 |
| Msa0054920 | Msa1196610 | -0.807234 | 5.584901e-50 | -8.615850e-47 |
| Msa0054920 | Msa1208450 | -0.825822 | 3.801266e-54 | -8.615850e-47 |
| Msa0054920 | Msa1208990 | 0.809926 | 1.485976e-50 | -8.615850e-47 |
| Msa0054920 | Msa1225860 | -0.819285 | 1.258245e-52 | -8.615850e-47 |
| Msa0054920 | Msa1236110 | -0.832251 | 1.051850e-55 | -8.615850e-47 |
| Msa0054920 | Msa1236440 | 0.808515 | 2.981606e-50 | -8.615850e-47 |
| Msa0054920 | Msa1237700 | 0.805864 | 1.086371e-49 | -8.615850e-47 |
| Msa0054920 | Msa1259860 | 0.802700 | 4.952698e-49 | -8.615850e-47 |
| Msa0054920 | Msa1272010 | 0.823920 | 1.068384e-53 | -8.615850e-47 |
| Msa0054920 | Msa1277670 | 0.801720 | 7.880489e-49 | -8.615850e-47 |
| Msa0054920 | Msa1303070 | 0.807379 | 5.201736e-50 | -8.615850e-47 |
| Msa0054920 | Msa1307180 | 0.805077 | 1.588854e-49 | -8.615850e-47 |
| Msa0054920 | Msa1309760 | 0.829261 | 5.684110e-55 | -8.615850e-47 |
| Msa0054920 | Msa1316360 | 0.815287 | 9.987548e-52 | -8.615850e-47 |
| Msa0054920 | Msa1325410 | -0.837794 | 4.213108e-57 | -8.615850e-47 |
| Msa0054920 | Msa1330540 | -0.800671 | 1.292159e-48 | -8.615850e-47 |
| Msa0054920 | Msa1340200 | 0.811792 | 5.864722e-51 | -8.615850e-47 |
| Msa0054920 | Msa1346840 | 0.820800 | 5.664740e-53 | -8.615850e-47 |
| Msa0054920 | Msa1352280 | -0.818943 | 1.505446e-52 | -8.615850e-47 |
| Msa0054920 | Msa1359400 | 0.957605 | 1.812925e-115 | -8.615850e-47 |
| Msa0054920 | Msa1363820 | -0.812080 | 5.075422e-51 | -8.615850e-47 |
| Msa0054920 | Msa1368360 | 0.852783 | 3.680645e-61 | -8.615850e-47 |
| Msa0054920 | Msa1369920 | -0.835091 | 2.052477e-56 | -8.615850e-47 |
| Msa0054920 | Msa1375610 | -0.816750 | 4.708580e-52 | -8.615850e-47 |
| Msa0054920 | Msa1376550 | -0.819855 | 9.329390e-53 | -8.615850e-47 |
| Msa0054920 | Msa1412130 | 0.825884 | 3.674207e-54 | -8.615850e-47 |
| Msa0054920 | Msa1423540 | 0.809621 | 1.728892e-50 | -8.615850e-47 |
| Msa0054920 | Msa1425260 | 0.820683 | 6.025058e-53 | -8.615850e-47 |
| Msa0054920 | Msa1434090 | 0.801976 | 6.982147e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054920 | MtrunA17_Chr1g0149811 | 95.312 | 128 | 5 | 1 | 78 | 205 | 136 | 262 | 2.88e-88 | 260 |
| Msa0054920 | MtrunA17_Chr1g0149811 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 1.99e-48 | 159 |
| Msa0054920 | MtrunA17_Chr3g0137111 | 34.061 | 229 | 83 | 9 | 23 | 190 | 4 | 225 | 9.05e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054920 | AT5G10970.1 | 37.333 | 150 | 56 | 7 | 78 | 205 | 139 | 272 | 1.23e-13 | 68.2 |
Find 29 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAACTCAAGAATCTTTA+TGG | 0.122503 | 1_2:+9694262 | Msa0054920:CDS |
| ATGGCTTCTTTGCCTCTTTA+TGG | 0.168485 | 1_2:+9694122 | Msa0054920:CDS |
| CTTTGTTTATTATGCATAAT+AGG | 0.201649 | 1_2:-9694089 | None:intergenic |
| CCTTCTCATGTTTCATCTAA+TGG | 0.202335 | 1_2:+9694200 | Msa0054920:CDS |
| CATGTTTCATCTAATGGATT+TGG | 0.228057 | 1_2:+9694206 | Msa0054920:CDS |
| AATGGATTTGGAAACTCTTA+TGG | 0.229174 | 1_2:+9694218 | Msa0054920:CDS |
| ATAGCTTCAGCTTCTGCTTT+TGG | 0.233602 | 1_2:+9694062 | Msa0054920:intron |
| TTGCCTCTTTATGGTGCTTT+TGG | 0.261823 | 1_2:+9694131 | Msa0054920:CDS |
| ATGAAACATGAGAAGGCTTA+TGG | 0.351379 | 1_2:-9694193 | None:intergenic |
| CTCATAACTTCTTTAGATGT+TGG | 0.385754 | 1_2:+9693871 | Msa0054920:CDS |
| TGCAAAGGTGTGCTTGGACT+TGG | 0.428789 | 1_2:-9693709 | None:intergenic |
| TTTGGTGGTAATAAACCTCT+TGG | 0.453972 | 1_2:+9694149 | Msa0054920:CDS |
| AAAGGTGTGCTTGGACTTGG+AGG | 0.516654 | 1_2:-9693706 | None:intergenic |
| TGGAATAGCAAAACTAGGTA+TGG | 0.517898 | 1_2:+9694295 | Msa0054920:CDS |
| ATCTTTATGGATCAACAACC+TGG | 0.518646 | 1_2:+9694275 | Msa0054920:CDS |
| CAACCTGGAATAGCAAAACT+AGG | 0.529841 | 1_2:+9694290 | Msa0054920:CDS |
| CCACCAAAAGCACCATAAAG+AGG | 0.536698 | 1_2:-9694134 | None:intergenic |
| CATCAAGAGGAAGTGTTGGT+AGG | 0.548091 | 1_2:+9694342 | Msa0054920:CDS |
| GAAGAAACAACAATCTATTG+AGG | 0.558110 | 1_2:+9693747 | Msa0054920:CDS |
| ATTAATGGAAAGACTAAGCA+AGG | 0.563627 | 1_2:+9693654 | None:intergenic |
| TATGGACATCATCATCATCA+TGG | 0.564611 | 1_2:+9694236 | Msa0054920:CDS |
| TCTTGAGAAGAGAAGATGCA+TGG | 0.579539 | 1_2:-9693679 | None:intergenic |
| GGTAGAAGAAGATATCACTA+AGG | 0.583712 | 1_2:+9693768 | Msa0054920:CDS |
| ACATCATCAAGAGGAAGTGT+TGG | 0.585725 | 1_2:+9694338 | Msa0054920:CDS |
| AGAACAACAACATCATCAAG+AGG | 0.611847 | 1_2:+9694329 | Msa0054920:CDS |
| ATATTCATAATCATAGCTTG+AGG | 0.612882 | 1_2:-9694436 | None:intergenic |
| TAAACAAAGTTATGCAAACA+TGG | 0.616969 | 1_2:+9694103 | Msa0054920:CDS |
| CCATTAGATGAAACATGAGA+AGG | 0.626125 | 1_2:-9694200 | None:intergenic |
| GAGTGTGCTTGAATTCCAAG+AGG | 0.647089 | 1_2:-9694164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGTTTATTATGCATAAT+AGG | - | chr1_2:9694092-9694111 | None:intergenic | 20.0% |
| !!! | CTTTGTTTATTATGCATAAT+AGG | - | chr1_2:9694092-9694111 | None:intergenic | 20.0% |
| !!! | TTTTCATGTTGATTTTGCAA+AGG | - | chr1_2:9693727-9693746 | None:intergenic | 25.0% |
| ! | TAAACAAAGTTATGCAAACA+TGG | + | chr1_2:9694103-9694122 | Msa0054920:CDS | 25.0% |
| !!! | TTTTCATGTTGATTTTGCAA+AGG | - | chr1_2:9693727-9693746 | None:intergenic | 25.0% |
| ! | TAAACAAAGTTATGCAAACA+TGG | + | chr1_2:9694103-9694122 | Msa0054920:CDS | 25.0% |
| GAAGAAACAACAATCTATTG+AGG | + | chr1_2:9693747-9693766 | Msa0054920:CDS | 30.0% | |
| CTCATAACTTCTTTAGATGT+TGG | + | chr1_2:9693871-9693890 | Msa0054920:CDS | 30.0% | |
| !! | CATGTTTCATCTAATGGATT+TGG | + | chr1_2:9694206-9694225 | Msa0054920:CDS | 30.0% |
| ! | AATGGATTTGGAAACTCTTA+TGG | + | chr1_2:9694218-9694237 | Msa0054920:CDS | 30.0% |
| GTCAAACTCAAGAATCTTTA+TGG | + | chr1_2:9694262-9694281 | Msa0054920:CDS | 30.0% | |
| GAAGAAACAACAATCTATTG+AGG | + | chr1_2:9693747-9693766 | Msa0054920:CDS | 30.0% | |
| CTCATAACTTCTTTAGATGT+TGG | + | chr1_2:9693871-9693890 | Msa0054920:CDS | 30.0% | |
| !! | CATGTTTCATCTAATGGATT+TGG | + | chr1_2:9694206-9694225 | Msa0054920:CDS | 30.0% |
| ! | AATGGATTTGGAAACTCTTA+TGG | + | chr1_2:9694218-9694237 | Msa0054920:CDS | 30.0% |
| GTCAAACTCAAGAATCTTTA+TGG | + | chr1_2:9694262-9694281 | Msa0054920:CDS | 30.0% | |
| GGTAGAAGAAGATATCACTA+AGG | + | chr1_2:9693768-9693787 | Msa0054920:CDS | 35.0% | |
| TTCTATAGCTCACAAGCATT+AGG | + | chr1_2:9693970-9693989 | Msa0054920:intron | 35.0% | |
| ! | TCTCTCTTTTGTGAGCATTT+TGG | - | chr1_2:9694002-9694021 | None:intergenic | 35.0% |
| GAGAGATCAATAGCAAAAAG+AGG | + | chr1_2:9694018-9694037 | Msa0054920:intron | 35.0% | |
| GCAAAAAGAGGACAAAGATT+TGG | + | chr1_2:9694030-9694049 | Msa0054920:intron | 35.0% | |
| ! | TTTGGTGGTAATAAACCTCT+TGG | + | chr1_2:9694149-9694168 | Msa0054920:CDS | 35.0% |
| ATGAAACATGAGAAGGCTTA+TGG | - | chr1_2:9694196-9694215 | None:intergenic | 35.0% | |
| CCATTAGATGAAACATGAGA+AGG | - | chr1_2:9694203-9694222 | None:intergenic | 35.0% | |
| CCTTCTCATGTTTCATCTAA+TGG | + | chr1_2:9694200-9694219 | Msa0054920:CDS | 35.0% | |
| TATGGACATCATCATCATCA+TGG | + | chr1_2:9694236-9694255 | Msa0054920:CDS | 35.0% | |
| ATCTTTATGGATCAACAACC+TGG | + | chr1_2:9694275-9694294 | Msa0054920:CDS | 35.0% | |
| !!! | ATACCTAGTTTTGCTATTCC+AGG | - | chr1_2:9694296-9694315 | None:intergenic | 35.0% |
| TGGAATAGCAAAACTAGGTA+TGG | + | chr1_2:9694295-9694314 | Msa0054920:CDS | 35.0% | |
| AGAACAACAACATCATCAAG+AGG | + | chr1_2:9694329-9694348 | Msa0054920:CDS | 35.0% | |
| GGTAGAAGAAGATATCACTA+AGG | + | chr1_2:9693768-9693787 | Msa0054920:CDS | 35.0% | |
| TTCTATAGCTCACAAGCATT+AGG | + | chr1_2:9693970-9693989 | Msa0054920:intron | 35.0% | |
| ! | TCTCTCTTTTGTGAGCATTT+TGG | - | chr1_2:9694002-9694021 | None:intergenic | 35.0% |
| GAGAGATCAATAGCAAAAAG+AGG | + | chr1_2:9694018-9694037 | Msa0054920:intron | 35.0% | |
| GCAAAAAGAGGACAAAGATT+TGG | + | chr1_2:9694030-9694049 | Msa0054920:intron | 35.0% | |
| ! | TTTGGTGGTAATAAACCTCT+TGG | + | chr1_2:9694149-9694168 | Msa0054920:CDS | 35.0% |
| ATGAAACATGAGAAGGCTTA+TGG | - | chr1_2:9694196-9694215 | None:intergenic | 35.0% | |
| CCATTAGATGAAACATGAGA+AGG | - | chr1_2:9694203-9694222 | None:intergenic | 35.0% | |
| CCTTCTCATGTTTCATCTAA+TGG | + | chr1_2:9694200-9694219 | Msa0054920:CDS | 35.0% | |
| TATGGACATCATCATCATCA+TGG | + | chr1_2:9694236-9694255 | Msa0054920:CDS | 35.0% | |
| ATCTTTATGGATCAACAACC+TGG | + | chr1_2:9694275-9694294 | Msa0054920:CDS | 35.0% | |
| !!! | ATACCTAGTTTTGCTATTCC+AGG | - | chr1_2:9694296-9694315 | None:intergenic | 35.0% |
| TGGAATAGCAAAACTAGGTA+TGG | + | chr1_2:9694295-9694314 | Msa0054920:CDS | 35.0% | |
| AGAACAACAACATCATCAAG+AGG | + | chr1_2:9694329-9694348 | Msa0054920:CDS | 35.0% | |
| TCTTGAGAAGAGAAGATGCA+TGG | - | chr1_2:9693682-9693701 | None:intergenic | 40.0% | |
| !! | TGATTTTGCAAAGGTGTGCT+TGG | - | chr1_2:9693718-9693737 | None:intergenic | 40.0% |
| TATAGCTCACAAGCATTAGG+TGG | + | chr1_2:9693973-9693992 | Msa0054920:intron | 40.0% | |
| ! | ATAGCTTCAGCTTCTGCTTT+TGG | + | chr1_2:9694062-9694081 | Msa0054920:intron | 40.0% |
| ATGGCTTCTTTGCCTCTTTA+TGG | + | chr1_2:9694122-9694141 | Msa0054920:CDS | 40.0% | |
| ! | TTGCCTCTTTATGGTGCTTT+TGG | + | chr1_2:9694131-9694150 | Msa0054920:CDS | 40.0% |
| GACATCATCATCATCATGGT+TGG | + | chr1_2:9694240-9694259 | Msa0054920:CDS | 40.0% | |
| CAACCTGGAATAGCAAAACT+AGG | + | chr1_2:9694290-9694309 | Msa0054920:CDS | 40.0% | |
| ! | ACATCATCAAGAGGAAGTGT+TGG | + | chr1_2:9694338-9694357 | Msa0054920:CDS | 40.0% |
| TCTTGAGAAGAGAAGATGCA+TGG | - | chr1_2:9693682-9693701 | None:intergenic | 40.0% | |
| !! | TGATTTTGCAAAGGTGTGCT+TGG | - | chr1_2:9693718-9693737 | None:intergenic | 40.0% |
| TATAGCTCACAAGCATTAGG+TGG | + | chr1_2:9693973-9693992 | Msa0054920:intron | 40.0% | |
| ! | ATAGCTTCAGCTTCTGCTTT+TGG | + | chr1_2:9694062-9694081 | Msa0054920:intron | 40.0% |
| ATGGCTTCTTTGCCTCTTTA+TGG | + | chr1_2:9694122-9694141 | Msa0054920:CDS | 40.0% | |
| ! | TTGCCTCTTTATGGTGCTTT+TGG | + | chr1_2:9694131-9694150 | Msa0054920:CDS | 40.0% |
| GACATCATCATCATCATGGT+TGG | + | chr1_2:9694240-9694259 | Msa0054920:CDS | 40.0% | |
| CAACCTGGAATAGCAAAACT+AGG | + | chr1_2:9694290-9694309 | Msa0054920:CDS | 40.0% | |
| ! | ACATCATCAAGAGGAAGTGT+TGG | + | chr1_2:9694338-9694357 | Msa0054920:CDS | 40.0% |
| !! | CCACCAAAAGCACCATAAAG+AGG | - | chr1_2:9694137-9694156 | None:intergenic | 45.0% |
| ! | CCTCTTTATGGTGCTTTTGG+TGG | + | chr1_2:9694134-9694153 | Msa0054920:CDS | 45.0% |
| GAGTGTGCTTGAATTCCAAG+AGG | - | chr1_2:9694167-9694186 | None:intergenic | 45.0% | |
| !! | CATCAAGAGGAAGTGTTGGT+AGG | + | chr1_2:9694342-9694361 | Msa0054920:CDS | 45.0% |
| !! | CCACCAAAAGCACCATAAAG+AGG | - | chr1_2:9694137-9694156 | None:intergenic | 45.0% |
| ! | CCTCTTTATGGTGCTTTTGG+TGG | + | chr1_2:9694134-9694153 | Msa0054920:CDS | 45.0% |
| GAGTGTGCTTGAATTCCAAG+AGG | - | chr1_2:9694167-9694186 | None:intergenic | 45.0% | |
| !! | CATCAAGAGGAAGTGTTGGT+AGG | + | chr1_2:9694342-9694361 | Msa0054920:CDS | 45.0% |
| ! | AAAGGTGTGCTTGGACTTGG+AGG | - | chr1_2:9693709-9693728 | None:intergenic | 50.0% |
| ! | TGCAAAGGTGTGCTTGGACT+TGG | - | chr1_2:9693712-9693731 | None:intergenic | 50.0% |
| ! | AAAGGTGTGCTTGGACTTGG+AGG | - | chr1_2:9693709-9693728 | None:intergenic | 50.0% |
| ! | TGCAAAGGTGTGCTTGGACT+TGG | - | chr1_2:9693712-9693731 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9693658 | 9694448 | 9693658 | ID=Msa0054920;Name=Msa0054920 |
| chr1_2 | mRNA | 9693658 | 9694448 | 9693658 | ID=Msa0054920-mRNA-1;Parent=Msa0054920;Name=Msa0054920-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|205 |
| chr1_2 | exon | 9693658 | 9693892 | 9693658 | ID=Msa0054920-mRNA-1:exon:3620;Parent=Msa0054920-mRNA-1 |
| chr1_2 | exon | 9694066 | 9694448 | 9694066 | ID=Msa0054920-mRNA-1:exon:3621;Parent=Msa0054920-mRNA-1 |
| chr1_2 | CDS | 9693658 | 9693892 | 9693658 | ID=Msa0054920-mRNA-1:cds;Parent=Msa0054920-mRNA-1 |
| chr1_2 | CDS | 9694066 | 9694448 | 9694066 | ID=Msa0054920-mRNA-1:cds;Parent=Msa0054920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
