Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119100 | sp|Q9SJ62|WDL4_ARATH | 43.322 | 307 | 114 | 10 | 102 | 374 | 93 | 373 | 1.62e-48 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119100 | A0A072VJ58 | 93.900 | 459 | 20 | 3 | 1 | 458 | 1 | 452 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071100 | Msa0119100 | 0.812099 | 5.026755e-51 | -8.615850e-47 |
| Msa0119100 | Msa0162440 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119100 | MtrunA17_Chr1g0176611 | 93.900 | 459 | 20 | 3 | 1 | 458 | 1 | 452 | 0.0 | 838 |
| Msa0119100 | MtrunA17_Chr7g0267791 | 49.894 | 471 | 173 | 13 | 1 | 458 | 1 | 421 | 3.34e-114 | 342 |
| Msa0119100 | MtrunA17_Chr3g0137761 | 45.413 | 218 | 84 | 7 | 233 | 419 | 210 | 423 | 2.20e-40 | 150 |
| Msa0119100 | MtrunA17_Chr1g0149361 | 78.495 | 93 | 19 | 1 | 233 | 324 | 227 | 319 | 2.09e-39 | 147 |
| Msa0119100 | MtrunA17_Chr1g0187121 | 61.290 | 93 | 35 | 1 | 231 | 322 | 213 | 305 | 2.92e-27 | 112 |
| Msa0119100 | MtrunA17_Chr1g0190551 | 46.154 | 143 | 67 | 3 | 207 | 339 | 162 | 304 | 1.69e-25 | 107 |
| Msa0119100 | MtrunA17_Chr7g0274281 | 56.989 | 93 | 39 | 1 | 231 | 322 | 208 | 300 | 5.34e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119100 | AT2G35880.3 | 43.322 | 307 | 114 | 10 | 102 | 374 | 93 | 373 | 1.65e-49 | 175 |
| Msa0119100 | AT2G35880.2 | 43.322 | 307 | 114 | 10 | 102 | 374 | 93 | 373 | 1.65e-49 | 175 |
| Msa0119100 | AT2G35880.1 | 43.322 | 307 | 114 | 10 | 102 | 374 | 93 | 373 | 1.65e-49 | 175 |
| Msa0119100 | AT4G32330.2 | 69.231 | 91 | 27 | 1 | 233 | 322 | 205 | 295 | 2.96e-35 | 136 |
| Msa0119100 | AT4G32330.1 | 69.231 | 91 | 27 | 1 | 233 | 322 | 206 | 296 | 3.03e-35 | 136 |
| Msa0119100 | AT4G32330.4 | 69.231 | 91 | 27 | 1 | 233 | 322 | 206 | 296 | 3.03e-35 | 136 |
| Msa0119100 | AT4G32330.3 | 69.231 | 91 | 27 | 1 | 233 | 322 | 206 | 296 | 3.03e-35 | 136 |
| Msa0119100 | AT2G25480.1 | 70.330 | 91 | 26 | 1 | 233 | 322 | 181 | 271 | 1.06e-33 | 131 |
| Msa0119100 | AT2G25480.2 | 70.330 | 91 | 26 | 1 | 233 | 322 | 182 | 272 | 1.07e-33 | 131 |
| Msa0119100 | AT5G28646.2 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 2.28e-26 | 106 |
| Msa0119100 | AT5G28646.1 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 2.28e-26 | 106 |
| Msa0119100 | AT5G28646.3 | 42.012 | 169 | 87 | 4 | 161 | 319 | 2 | 169 | 2.28e-26 | 105 |
| Msa0119100 | AT3G04630.3 | 51.754 | 114 | 47 | 3 | 213 | 318 | 103 | 216 | 2.97e-25 | 105 |
| Msa0119100 | AT3G04630.2 | 45.070 | 142 | 65 | 3 | 180 | 318 | 80 | 211 | 3.07e-25 | 105 |
| Msa0119100 | AT3G04630.1 | 51.754 | 114 | 47 | 3 | 213 | 318 | 99 | 212 | 3.10e-25 | 105 |
| Msa0119100 | AT3G23090.5 | 53.448 | 116 | 47 | 2 | 212 | 320 | 167 | 282 | 4.85e-25 | 105 |
| Msa0119100 | AT3G23090.1 | 53.448 | 116 | 47 | 2 | 212 | 320 | 166 | 281 | 4.97e-25 | 105 |
| Msa0119100 | AT3G23090.4 | 53.448 | 116 | 47 | 2 | 212 | 320 | 202 | 317 | 8.02e-25 | 105 |
| Msa0119100 | AT3G23090.2 | 51.667 | 120 | 47 | 3 | 212 | 320 | 166 | 285 | 5.16e-24 | 102 |
| Msa0119100 | AT3G23090.3 | 51.667 | 120 | 47 | 3 | 212 | 320 | 202 | 321 | 6.79e-24 | 103 |
| Msa0119100 | AT1G54460.1 | 54.839 | 93 | 41 | 1 | 231 | 322 | 162 | 254 | 3.70e-21 | 94.7 |
| Msa0119100 | AT1G70950.1 | 55.000 | 80 | 33 | 2 | 218 | 296 | 313 | 390 | 2.44e-16 | 81.6 |
Find 97 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTTGGTGATTT+TGG | 0.061731 | 1_3:+42628646 | None:intergenic |
| TAGCTTCTTATTAAGAAATA+TGG | 0.189804 | 1_3:-42627954 | Msa0119100:three_prime_UTR |
| ACTTCATAGGATACAGTTTC+TGG | 0.228034 | 1_3:+42628244 | None:intergenic |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1_3:+42628317 | None:intergenic |
| TTATGGTACCTTGGAACTTT+TGG | 0.246711 | 1_3:+42630604 | None:intergenic |
| TAATGAAATAACTGGTAAAA+AGG | 0.248214 | 1_3:+42628162 | None:intergenic |
| GAAGTTGTGCCCTTCAAATT+TGG | 0.258397 | 1_3:+42630147 | None:intergenic |
| GGGTTGAGATGCTTCATTCT+TGG | 0.262885 | 1_3:+42630670 | None:intergenic |
| TTGCTATCAATTTCTACTTT+GGG | 0.283046 | 1_3:+42630650 | None:intergenic |
| GGTTGAGATGCTTCATTCTT+GGG | 0.299174 | 1_3:+42630671 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+TGG | 0.314245 | 1_3:+42628637 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1_3:-42628772 | Msa0119100:intron |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1_3:-42628544 | Msa0119100:CDS |
| TTTCTGGTGTGGAAGCATTA+AGG | 0.334990 | 1_3:+42628260 | None:intergenic |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1_3:-42628482 | Msa0119100:CDS |
| GAAGATGAGAAGCATGTTAT+TGG | 0.347674 | 1_3:-42630758 | Msa0119100:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1_3:-42628802 | Msa0119100:CDS |
| GTTGCTATCAATTTCTACTT+TGG | 0.352478 | 1_3:+42630649 | None:intergenic |
| CACAATAATAATGAAATAAC+TGG | 0.358013 | 1_3:+42628154 | None:intergenic |
| TGCCTCAAAAGTCTGGCTTT+TGG | 0.370248 | 1_3:+42629746 | None:intergenic |
| GTCTCTCAAACAAGTTTAAG+AGG | 0.388918 | 1_3:-42631945 | Msa0119100:intron |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1_3:-42629025 | Msa0119100:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1_3:+42628853 | None:intergenic |
| CTTCAAATTTGGTTTAACTT+TGG | 0.403096 | 1_3:+42630158 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1_3:+42629396 | None:intergenic |
| ATCTGAAAATGAAGTTGTTA+TGG | 0.408821 | 1_3:-42630780 | Msa0119100:CDS |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1_3:+42628582 | None:intergenic |
| CTGATTTCGACGGGAATGTA+AGG | 0.413726 | 1_3:+42630088 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1_3:+42628571 | None:intergenic |
| CGCGGTCACGAAAACAGAAA+TGG | 0.415791 | 1_3:-42628455 | Msa0119100:CDS |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1_3:+42629357 | None:intergenic |
| ACATTGATGCCTCAAAAGTC+TGG | 0.423804 | 1_3:+42629739 | None:intergenic |
| AATGACAGTTACATATTTGA+GGG | 0.429031 | 1_3:-42632216 | Msa0119100:five_prime_UTR |
| CAAATTTGGTTTAACTTTGG+TGG | 0.435552 | 1_3:+42630161 | None:intergenic |
| CTCTGGATTCTCCTTCAGAT+TGG | 0.436792 | 1_3:-42629168 | Msa0119100:CDS |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1_3:+42628572 | None:intergenic |
| AACTGAAGTTGGTGATACTA+AGG | 0.445260 | 1_3:+42632070 | None:intergenic |
| TTTATGTATGTGTTCTACCT+TGG | 0.453122 | 1_3:+42630727 | None:intergenic |
| CAATGACAGTTACATATTTG+AGG | 0.456998 | 1_3:-42632217 | Msa0119100:five_prime_UTR |
| GAGTTTAGATTGGTGTATCA+AGG | 0.458663 | 1_3:-42628213 | Msa0119100:exon |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1_3:-42629185 | Msa0119100:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1_3:-42628330 | Msa0119100:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1_3:-42628331 | Msa0119100:CDS |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1_3:+42629188 | None:intergenic |
| GTTGCTGTGGGAGTTTAGAT+TGG | 0.474271 | 1_3:-42628223 | Msa0119100:exon |
| CATTATTATTGTGAATATAG+AGG | 0.476292 | 1_3:-42628144 | Msa0119100:three_prime_UTR |
| GTTTGGGAGGTCTACCCCAT+TGG | 0.476527 | 1_3:-42629778 | Msa0119100:CDS |
| CAGTTACATATTTGAGGGAG+TGG | 0.477152 | 1_3:-42632211 | Msa0119100:five_prime_UTR |
| AACTCCCACAGCAACTTCAT+AGG | 0.482114 | 1_3:+42628231 | None:intergenic |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1_3:+42628801 | None:intergenic |
| CAAAGTTAAACCAAATTTGA+AGG | 0.485184 | 1_3:-42630157 | Msa0119100:CDS |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1_3:+42629157 | None:intergenic |
| CGCCCAAAATCACCAAAGCT+TGG | 0.494610 | 1_3:-42628649 | Msa0119100:CDS |
| AATCACTGAGACCTCGTTTG+TGG | 0.511682 | 1_3:+42628417 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1_3:+42628795 | None:intergenic |
| TTCTTTGCAAAAGTGATTTG+TGG | 0.520058 | 1_3:+42632095 | None:intergenic |
| GTGATAGTTGAACTTGAAGA+TGG | 0.522631 | 1_3:+42632046 | None:intergenic |
| GTCAATTCATGTTAGGAACC+TGG | 0.523313 | 1_3:-42630222 | Msa0119100:intron |
| GCACCGATGGGATTCTTAAG+AGG | 0.526266 | 1_3:-42630041 | Msa0119100:CDS |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1_3:-42629031 | Msa0119100:CDS |
| AAAGTTAAACCAAATTTGAA+GGG | 0.551958 | 1_3:-42630156 | Msa0119100:CDS |
| CCAAAGCTTGGAAGAAACAA+AGG | 0.558242 | 1_3:-42628637 | Msa0119100:CDS |
| GGAATGTAAGGCTCTTTGAA+AGG | 0.559563 | 1_3:+42630100 | None:intergenic |
| TGTGTCTATTTGCAGGACAA+TGG | 0.563173 | 1_3:-42630804 | Msa0119100:intron |
| CAAGACGAGCTGATTTCGAC+GGG | 0.570713 | 1_3:+42630079 | None:intergenic |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1_3:-42628551 | Msa0119100:CDS |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1_3:+42628477 | None:intergenic |
| TTGAAGATGGAAACTGAAGT+TGG | 0.581322 | 1_3:+42632059 | None:intergenic |
| AAGAAAGTTGACAAACTCAA+AGG | 0.583844 | 1_3:-42629974 | Msa0119100:CDS |
| ACAGTGTCCCTTCAATCAGA+AGG | 0.585170 | 1_3:+42627991 | None:intergenic |
| TTGTGGAGAGAAAGCTCAAG+TGG | 0.589092 | 1_3:+42632112 | None:intergenic |
| GCTATCAGAAGTCTTACTCC+TGG | 0.593123 | 1_3:-42629206 | Msa0119100:intron |
| ATAGGATACAGTTTCTGGTG+TGG | 0.593998 | 1_3:+42628249 | None:intergenic |
| TGTATCCTATGAAGTTGCTG+TGG | 0.597144 | 1_3:-42628236 | Msa0119100:CDS |
| GCTATGAAGAAAAGCACCGA+TGG | 0.607394 | 1_3:-42630054 | Msa0119100:CDS |
| TCAAGACGAGCTGATTTCGA+CGG | 0.610150 | 1_3:+42630078 | None:intergenic |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1_3:-42629141 | Msa0119100:intron |
| GCTAGCAAAGCATTGAGGTG+AGG | 0.629634 | 1_3:+42632271 | None:intergenic |
| CATAAAGAAGTTGAAGACAA+TGG | 0.630212 | 1_3:-42630710 | Msa0119100:CDS |
| AGTCCTCTTAAGAATCCCAT+CGG | 0.630381 | 1_3:+42630038 | None:intergenic |
| ACAATGGAAACTCTAAACAA+AGG | 0.631858 | 1_3:-42629939 | Msa0119100:CDS |
| ATACTATCTACCAGTTTGGG+AGG | 0.633632 | 1_3:-42629791 | Msa0119100:intron |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1_3:-42628307 | Msa0119100:CDS |
| TATTCAGAAATATTAACAGA+AGG | 0.636984 | 1_3:+42628340 | None:intergenic |
| CTATGAAGAAAAGCACCGAT+GGG | 0.637449 | 1_3:-42630053 | Msa0119100:CDS |
| TGTCATGTCTTCCACAAACG+AGG | 0.638979 | 1_3:-42628428 | Msa0119100:CDS |
| GTATCCTATGAAGTTGCTGT+GGG | 0.642363 | 1_3:-42628235 | Msa0119100:CDS |
| TCTTGCTCAGAACAGTGTGT+TGG | 0.650728 | 1_3:-42628284 | Msa0119100:CDS |
| AAAGTTGACAAACTCAAAGG+AGG | 0.655478 | 1_3:-42629971 | Msa0119100:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1_3:-42629191 | Msa0119100:CDS |
| TAATCTGCAAGAGAAATCGA+AGG | 0.672615 | 1_3:-42628989 | Msa0119100:intron |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1_3:-42628473 | Msa0119100:CDS |
| AAATAGCTTTAAAAGCTCTG+AGG | 0.685220 | 1_3:-42629899 | Msa0119100:intron |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1_3:-42628557 | Msa0119100:CDS |
| TGTTATTGGTGAAACAACCA+AGG | 0.697770 | 1_3:-42630744 | Msa0119100:CDS |
| TTTGGCAACTGCAACCAATG+GGG | 0.700633 | 1_3:+42629764 | None:intergenic |
| TTTCTGGCAGGAAAGCCAAG+AGG | 0.719137 | 1_3:-42628868 | Msa0119100:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTAAAATACTTTTTTT+TGG | - | chr1_3:42628923-42628942 | Msa0119100:intron | 10.0% |
| !! | AAAAATTCATATATATCTTT+AGG | - | chr1_3:42630743-42630762 | Msa0119100:CDS | 10.0% |
| !!! | TAAATACTTGATCTAAAATA+TGG | + | chr1_3:42628978-42628997 | None:intergenic | 15.0% |
| !!! | ATTTTAGATCAAGTATTTAA+TGG | - | chr1_3:42628979-42628998 | Msa0119100:intron | 15.0% |
| !!! | ATTTTAAAATTTGTCAGTTT+TGG | + | chr1_3:42629010-42629029 | None:intergenic | 15.0% |
| !! | TAGCATAAATAAAAATGAAA+AGG | - | chr1_3:42629191-42629210 | Msa0119100:CDS | 15.0% |
| !!! | ATGAAAACAAAATATTGATT+TGG | + | chr1_3:42629803-42629822 | None:intergenic | 15.0% |
| !! | ATAATTTATACAATACAGTT+TGG | + | chr1_3:42630525-42630544 | None:intergenic | 15.0% |
| !! | AAACTGTATTGTATAAATTA+TGG | - | chr1_3:42630524-42630543 | Msa0119100:intron | 15.0% |
| !! | TTAAAATATTATGTCTCATT+AGG | - | chr1_3:42630923-42630942 | Msa0119100:intron | 15.0% |
| !! | AAATTTCATGAATCTATTAT+AGG | + | chr1_3:42630991-42631010 | None:intergenic | 15.0% |
| !!! | AATTTTGATTAATCTCCTTA+AGG | + | chr1_3:42628619-42628638 | None:intergenic | 20.0% |
| !! | ATTAATCAAAATTACAGCAT+TGG | - | chr1_3:42628626-42628645 | Msa0119100:CDS | 20.0% |
| !! | TTAATCAAAATTACAGCATT+GGG | - | chr1_3:42628627-42628646 | Msa0119100:CDS | 20.0% |
| !! | TTATGATTTAATGATGAGAA+AGG | - | chr1_3:42628859-42628878 | Msa0119100:CDS | 20.0% |
| !! | ATATATTCCTAAAATGTGTA+TGG | + | chr1_3:42629273-42629292 | None:intergenic | 20.0% |
| !! | TAATTATGATACATTGCTTA+TGG | + | chr1_3:42629642-42629661 | None:intergenic | 20.0% |
| !! | AAACTATCATGAAAATCTTA+TGG | - | chr1_3:42629846-42629865 | Msa0119100:intron | 20.0% |
| !! | AAAGTTAAACCAAATTTGAA+GGG | - | chr1_3:42630070-42630089 | Msa0119100:CDS | 20.0% |
| !!! | TGAAAGTTGCATAATAATTT+TGG | + | chr1_3:42630557-42630576 | None:intergenic | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | chr1_3:42630968-42630987 | None:intergenic | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | chr1_3:42631123-42631142 | None:intergenic | 20.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | chr1_3:42631531-42631550 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGA+AGG | + | chr1_3:42631889-42631908 | None:intergenic | 20.0% |
| !! | TAATGAAATAACTGGTAAAA+AGG | + | chr1_3:42632067-42632086 | None:intergenic | 20.0% |
| !! | CACAATAATAATGAAATAAC+TGG | + | chr1_3:42632075-42632094 | None:intergenic | 20.0% |
| !! | CATTATTATTGTGAATATAG+AGG | - | chr1_3:42632082-42632101 | Msa0119100:five_prime_UTR | 20.0% |
| !! | TAGCTTCTTATTAAGAAATA+TGG | - | chr1_3:42632272-42632291 | Msa0119100:five_prime_UTR | 20.0% |
| ! | AATGACAGTTACATATTTGA+GGG | - | chr1_3:42628010-42628029 | Msa0119100:three_prime_UTR | 25.0% |
| !!! | TAAGCTAGTTTTCAATGAAT+TGG | + | chr1_3:42628091-42628110 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGTAAGTGCTTT+TGG | + | chr1_3:42628220-42628239 | None:intergenic | 25.0% |
| ! | AGACAAAAAGAAAATGCATA+TGG | + | chr1_3:42628376-42628395 | None:intergenic | 25.0% |
| !!! | TGATTAGTTTCATTGAATTG+TGG | - | chr1_3:42628420-42628439 | Msa0119100:CDS | 25.0% |
| ! | ATCTGCAAAAAGATGAAAAT+AGG | + | chr1_3:42628737-42628756 | None:intergenic | 25.0% |
| ! | GTAGTTCAAAAATATGATGA+AGG | + | chr1_3:42628796-42628815 | None:intergenic | 25.0% |
| !!! | TAAAATTTGTCAGTTTTGGT+CGG | + | chr1_3:42629006-42629025 | None:intergenic | 25.0% |
| ! | AATCTCATCAAATTGCATAT+GGG | + | chr1_3:42629158-42629177 | None:intergenic | 25.0% |
| ! | TAATCTCATCAAATTGCATA+TGG | + | chr1_3:42629159-42629178 | None:intergenic | 25.0% |
| ! | ATTTGATGAGATTAAGATTC+TGG | - | chr1_3:42629165-42629184 | Msa0119100:CDS | 25.0% |
| !!! | ATGCTAACTTCTTTTTTTAG+AGG | + | chr1_3:42629241-42629260 | None:intergenic | 25.0% |
| ! | TCTAAAAAAAGAAGTTAGCA+TGG | - | chr1_3:42629240-42629259 | Msa0119100:intron | 25.0% |
| !! | ACTTAAACCATACACATTTT+AGG | - | chr1_3:42629263-42629282 | Msa0119100:intron | 25.0% |
| !! | TAGAATTATGCATAGTTTGT+TGG | - | chr1_3:42629298-42629317 | Msa0119100:intron | 25.0% |
| ! | CAAATAGACACAAAAAATAG+AGG | + | chr1_3:42629414-42629433 | None:intergenic | 25.0% |
| !!! | TATTTTTTGTGTCTATTTGC+AGG | - | chr1_3:42629415-42629434 | Msa0119100:intron | 25.0% |
| ! | ATCTGAAAATGAAGTTGTTA+TGG | - | chr1_3:42629446-42629465 | Msa0119100:intron | 25.0% |
| ! | TTGCTATCAATTTCTACTTT+GGG | + | chr1_3:42629579-42629598 | None:intergenic | 25.0% |
| !! | CTTCAAATTTGGTTTAACTT+TGG | + | chr1_3:42630071-42630090 | None:intergenic | 25.0% |
| ! | CAAAGTTAAACCAAATTTGA+AGG | - | chr1_3:42630069-42630088 | Msa0119100:CDS | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | chr1_3:42630392-42630411 | Msa0119100:intron | 25.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | chr1_3:42631195-42631214 | Msa0119100:intron | 25.0% |
| !! | CATACATATTTTGTTCCATA+TGG | - | chr1_3:42631277-42631296 | Msa0119100:intron | 25.0% |
| !!! | ATCTTTTTCCTTTTGATTTC+TGG | - | chr1_3:42631342-42631361 | Msa0119100:intron | 25.0% |
| ! | ATCAGACTATATATTGTTAG+AGG | + | chr1_3:42631485-42631504 | None:intergenic | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | chr1_3:42631895-42631914 | Msa0119100:intron | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | chr1_3:42631896-42631915 | Msa0119100:intron | 25.0% |
| CAATGACAGTTACATATTTG+AGG | - | chr1_3:42628009-42628028 | Msa0119100:three_prime_UTR | 30.0% | |
| TTCTTTGCAAAAGTGATTTG+TGG | + | chr1_3:42628134-42628153 | None:intergenic | 30.0% | |
| ! | TTTTGTAAGTGCTTTTGGAT+TGG | + | chr1_3:42628215-42628234 | None:intergenic | 30.0% |
| ! | CAGAATCTTATTCTGAGAAT+TGG | - | chr1_3:42628527-42628546 | Msa0119100:CDS | 30.0% |
| AGAATTGGAATTCAGATTTG+TGG | - | chr1_3:42628542-42628561 | Msa0119100:CDS | 30.0% | |
| ! | CTTCTTTGAAAATGAAAGCA+TGG | + | chr1_3:42628591-42628610 | None:intergenic | 30.0% |
| ! | TTCAAAGAAGTGTAACCTTA+AGG | - | chr1_3:42628601-42628620 | Msa0119100:CDS | 30.0% |
| TTTACACGTAATTGCAGTTA+TGG | - | chr1_3:42628707-42628726 | Msa0119100:intron | 30.0% | |
| TGCAAAAAGATGAAAATAGG+AGG | + | chr1_3:42628734-42628753 | None:intergenic | 30.0% | |
| TTTATGTATGTGTTCTACCT+TGG | + | chr1_3:42629502-42629521 | None:intergenic | 30.0% | |
| CATAAAGAAGTTGAAGACAA+TGG | - | chr1_3:42629516-42629535 | Msa0119100:intron | 30.0% | |
| GTTGCTATCAATTTCTACTT+TGG | + | chr1_3:42629580-42629599 | None:intergenic | 30.0% | |
| TAAAAACTCCAAAAGTTCCA+AGG | - | chr1_3:42629614-42629633 | Msa0119100:intron | 30.0% | |
| TATGTGCTTTACGACATATT+TGG | + | chr1_3:42629975-42629994 | None:intergenic | 30.0% | |
| ! | CAAATTTGGTTTAACTTTGG+TGG | + | chr1_3:42630068-42630087 | None:intergenic | 30.0% |
| AAGAAAGTTGACAAACTCAA+AGG | - | chr1_3:42630252-42630271 | Msa0119100:intron | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | chr1_3:42630287-42630306 | Msa0119100:intron | 30.0% | |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | chr1_3:42630327-42630346 | Msa0119100:intron | 30.0% |
| TAGTATAGAAGTAATGAGCA+AGG | + | chr1_3:42630421-42630440 | None:intergenic | 30.0% | |
| TTCTATACTATCTACCAGTT+TGG | - | chr1_3:42630431-42630450 | Msa0119100:intron | 30.0% | |
| TCTATACTATCTACCAGTTT+GGG | - | chr1_3:42630432-42630451 | Msa0119100:intron | 30.0% | |
| ! | TACAATACAGTTTGGAGTTT+AGG | + | chr1_3:42630517-42630536 | None:intergenic | 30.0% |
| ! | CAATCTTTAATGCTAGTCTA+AGG | - | chr1_3:42630704-42630723 | Msa0119100:CDS | 30.0% |
| TTCGTTCATCAGAAATATGT+TGG | + | chr1_3:42630777-42630796 | None:intergenic | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | chr1_3:42630788-42630807 | Msa0119100:CDS | 30.0% | |
| AGAAGAGAAAATTCAGGAAA+AGG | - | chr1_3:42631201-42631220 | Msa0119100:intron | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | chr1_3:42631295-42631314 | None:intergenic | 30.0% | |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | chr1_3:42631293-42631312 | Msa0119100:intron | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | chr1_3:42631733-42631752 | None:intergenic | 30.0% |
| AATCAAAAAAACTCAAGCCA+AGG | - | chr1_3:42631732-42631751 | Msa0119100:intron | 30.0% | |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | chr1_3:42631843-42631862 | None:intergenic | 30.0% |
| GCAAAAACAAGTATAGTTGA+AGG | - | chr1_3:42631847-42631866 | Msa0119100:intron | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | chr1_3:42631919-42631938 | Msa0119100:intron | 30.0% | |
| ! | TGTTTTTCCTTCTGATTGAA+GGG | - | chr1_3:42632228-42632247 | Msa0119100:five_prime_UTR | 30.0% |
| !!! | TTTTTGCTAGCAAAGCATTG+AGG | + | chr1_3:42627963-42627982 | None:intergenic | 35.0% |
| !! | AACTGAAGTTGGTGATACTA+AGG | + | chr1_3:42628159-42628178 | None:intergenic | 35.0% |
| TTGAAGATGGAAACTGAAGT+TGG | + | chr1_3:42628170-42628189 | None:intergenic | 35.0% | |
| GTGATAGTTGAACTTGAAGA+TGG | + | chr1_3:42628183-42628202 | None:intergenic | 35.0% | |
| GTCTCTCAAACAAGTTTAAG+AGG | - | chr1_3:42628281-42628300 | Msa0119100:CDS | 35.0% | |
| GCATATGGAAAACAAACACA+TGG | + | chr1_3:42628361-42628380 | None:intergenic | 35.0% | |
| ! | ATCAAAATTACAGCATTGGG+AGG | - | chr1_3:42628630-42628649 | Msa0119100:CDS | 35.0% |
| ! | ATTGCGAGACTAATTTTACG+AGG | - | chr1_3:42629028-42629047 | Msa0119100:CDS | 35.0% |
| TGGTCAGGTTTAATCTTTGA+CGG | + | chr1_3:42629093-42629112 | None:intergenic | 35.0% | |
| TAAACCTGACCACATACTTA+AGG | - | chr1_3:42629101-42629120 | Msa0119100:intron | 35.0% | |
| AAACCTGACCACATACTTAA+GGG | - | chr1_3:42629102-42629121 | Msa0119100:intron | 35.0% | |
| ! | GAAGATGAGAAGCATGTTAT+TGG | - | chr1_3:42629468-42629487 | Msa0119100:intron | 35.0% |
| TGTTATTGGTGAAACAACCA+AGG | - | chr1_3:42629482-42629501 | Msa0119100:intron | 35.0% | |
| ! | TTATGGTACCTTGGAACTTT+TGG | + | chr1_3:42629625-42629644 | None:intergenic | 35.0% |
| ATACATTGCTTATGGTACCT+TGG | + | chr1_3:42629634-42629653 | None:intergenic | 35.0% | |
| TGACCTTGTCAATTCATGTT+AGG | - | chr1_3:42629997-42630016 | Msa0119100:CDS | 35.0% | |
| GTTCCTAACATGAATTGACA+AGG | + | chr1_3:42630003-42630022 | None:intergenic | 35.0% | |
| AAAGTTGACAAACTCAAAGG+AGG | - | chr1_3:42630255-42630274 | Msa0119100:intron | 35.0% | |
| AAGGAGGCAAAAACAAACAA+TGG | - | chr1_3:42630271-42630290 | Msa0119100:intron | 35.0% | |
| AGCATAATTGACCTCAATAG+TGG | - | chr1_3:42630585-42630604 | Msa0119100:intron | 35.0% | |
| CTCATTAGGATATGAACTTG+CGG | - | chr1_3:42630937-42630956 | Msa0119100:intron | 35.0% | |
| CTGGATGAAAAGGATAACAT+AGG | + | chr1_3:42631167-42631186 | None:intergenic | 35.0% | |
| TTGAGAAGAACTGGATGAAA+AGG | + | chr1_3:42631177-42631196 | None:intergenic | 35.0% | |
| ! | CTTCTAACTTTGAGAAGAAC+TGG | + | chr1_3:42631186-42631205 | None:intergenic | 35.0% |
| TAATCTGCAAGAGAAATCGA+AGG | - | chr1_3:42631237-42631256 | Msa0119100:intron | 35.0% | |
| !!! | TTTTCCTTTTGATTTCTGGC+AGG | - | chr1_3:42631346-42631365 | Msa0119100:intron | 35.0% |
| TCCAATGCCAAGTTTCTATA+AGG | - | chr1_3:42631424-42631443 | Msa0119100:intron | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | chr1_3:42631428-42631447 | None:intergenic | 35.0% | |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | chr1_3:42631455-42631474 | None:intergenic | 35.0% |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | chr1_3:42631454-42631473 | Msa0119100:intron | 35.0% | |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | chr1_3:42631458-42631477 | None:intergenic | 35.0% |
| !! | TTCCAAGCTTTGGTGATTTT+GGG | + | chr1_3:42631582-42631601 | None:intergenic | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | chr1_3:42631657-42631676 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | chr1_3:42631658-42631677 | None:intergenic | 35.0% |
| ACAGAAGAATGATTCAACCA+AGG | - | chr1_3:42631669-42631688 | Msa0119100:intron | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | chr1_3:42631752-42631771 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGCATCTTGGTCA+TGG | + | chr1_3:42631837-42631856 | None:intergenic | 35.0% |
| ATTCTTGTTCTATCCCATTC+TGG | + | chr1_3:42631912-42631931 | None:intergenic | 35.0% | |
| ACTTCATAGGATACAGTTTC+TGG | + | chr1_3:42631985-42632004 | None:intergenic | 35.0% | |
| GAGTTTAGATTGGTGTATCA+AGG | - | chr1_3:42632013-42632032 | Msa0119100:five_prime_UTR | 35.0% | |
| ! | GTGTTTTTCCTTCTGATTGA+AGG | - | chr1_3:42632227-42632246 | Msa0119100:five_prime_UTR | 35.0% |
| CAGTTACATATTTGAGGGAG+TGG | - | chr1_3:42628015-42628034 | Msa0119100:three_prime_UTR | 40.0% | |
| !! | AATTGTGGAGAGTTTGTTGC+AGG | - | chr1_3:42628435-42628454 | Msa0119100:CDS | 40.0% |
| !! | ATTGTGGAGAGTTTGTTGCA+GGG | - | chr1_3:42628436-42628455 | Msa0119100:CDS | 40.0% |
| GGTCAGGTTTAATCTTTGAC+GGG | + | chr1_3:42629092-42629111 | None:intergenic | 40.0% | |
| AACCTGACCACATACTTAAG+GGG | - | chr1_3:42629103-42629122 | Msa0119100:intron | 40.0% | |
| AATTGCATATGGGACCAATG+TGG | + | chr1_3:42629148-42629167 | None:intergenic | 40.0% | |
| AGGACTCAATAAAGCTAGAG+TGG | - | chr1_3:42629211-42629230 | Msa0119100:intron | 40.0% | |
| TGTGTCTATTTGCAGGACAA+TGG | - | chr1_3:42629422-42629441 | Msa0119100:intron | 40.0% | |
| GGTTGAGATGCTTCATTCTT+GGG | + | chr1_3:42629558-42629577 | None:intergenic | 40.0% | |
| !! | TTATCTACCGACTCCGTAAT+AGG | - | chr1_3:42629659-42629678 | Msa0119100:intron | 40.0% |
| GCACGTATTATATGCGCTTA+TGG | - | chr1_3:42629713-42629732 | Msa0119100:intron | 40.0% | |
| GTCAATTCATGTTAGGAACC+TGG | - | chr1_3:42630004-42630023 | Msa0119100:CDS | 40.0% | |
| GAAGTTGTGCCCTTCAAATT+TGG | + | chr1_3:42630082-42630101 | None:intergenic | 40.0% | |
| GGAATGTAAGGCTCTTTGAA+AGG | + | chr1_3:42630129-42630148 | None:intergenic | 40.0% | |
| !! | CTATGAAGAAAAGCACCGAT+GGG | - | chr1_3:42630173-42630192 | Msa0119100:CDS | 40.0% |
| AGTCCTCTTAAGAATCCCAT+CGG | + | chr1_3:42630191-42630210 | None:intergenic | 40.0% | |
| ATACTATCTACCAGTTTGGG+AGG | - | chr1_3:42630435-42630454 | Msa0119100:intron | 40.0% | |
| ! | TTTTGGCAACTGCAACCAAT+GGG | + | chr1_3:42630466-42630485 | None:intergenic | 40.0% |
| ACATTGATGCCTCAAAAGTC+TGG | + | chr1_3:42630490-42630509 | None:intergenic | 40.0% | |
| CGCATTATGCCTCAATATCA+TGG | - | chr1_3:42630619-42630638 | Msa0119100:CDS | 40.0% | |
| ! | TGCCTCAATATCATGGATTG+TGG | - | chr1_3:42630626-42630645 | Msa0119100:CDS | 40.0% |
| AATATTGGGAGTCGTGATTG+CGG | + | chr1_3:42630669-42630688 | None:intergenic | 40.0% | |
| CAGTCATGTGGAAAACCATA+AGG | + | chr1_3:42630806-42630825 | None:intergenic | 40.0% | |
| GGGTTTGAATTCTGATCAAC+AGG | + | chr1_3:42630833-42630852 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | chr1_3:42630872-42630891 | None:intergenic | 40.0% | |
| CTTTCCTGCCAGAAATCAAA+AGG | + | chr1_3:42631353-42631372 | None:intergenic | 40.0% | |
| ATTTCTTGATCTCTGCCTCT+TGG | + | chr1_3:42631376-42631395 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | chr1_3:42631434-42631453 | None:intergenic | 40.0% | |
| !! | CTTCCAAGCTTTGGTGATTT+TGG | + | chr1_3:42631583-42631602 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+TGG | + | chr1_3:42631592-42631611 | None:intergenic | 40.0% |
| CCAAAGCTTGGAAGAAACAA+AGG | - | chr1_3:42631589-42631608 | Msa0119100:intron | 40.0% | |
| TTTCTCATGTGGGATAGAAC+TGG | + | chr1_3:42631647-42631666 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | chr1_3:42631675-42631694 | Msa0119100:intron | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | chr1_3:42631682-42631701 | Msa0119100:intron | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | chr1_3:42631689-42631708 | None:intergenic | 40.0% |
| TCAAGCCAAGGTACAATCTA+AGG | - | chr1_3:42631744-42631763 | Msa0119100:intron | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | chr1_3:42631753-42631772 | Msa0119100:intron | 40.0% | |
| !! | TTTCTGGTGTGGAAGCATTA+AGG | + | chr1_3:42631969-42631988 | None:intergenic | 40.0% |
| !! | ATAGGATACAGTTTCTGGTG+TGG | + | chr1_3:42631980-42631999 | None:intergenic | 40.0% |
| TGTATCCTATGAAGTTGCTG+TGG | - | chr1_3:42631990-42632009 | Msa0119100:five_prime_UTR | 40.0% | |
| GTATCCTATGAAGTTGCTGT+GGG | - | chr1_3:42631991-42632010 | Msa0119100:five_prime_UTR | 40.0% | |
| TTGTGGAGAGAAAGCTCAAG+TGG | + | chr1_3:42628117-42628136 | None:intergenic | 45.0% | |
| !! | TTGTGGAGAGTTTGTTGCAG+GGG | - | chr1_3:42628437-42628456 | Msa0119100:CDS | 45.0% |
| GGGTTGAGATGCTTCATTCT+TGG | + | chr1_3:42629559-42629578 | None:intergenic | 45.0% | |
| ! | GCAACAATGCTTTTGACACC+AGG | + | chr1_3:42630025-42630044 | None:intergenic | 45.0% |
| CTGATTTCGACGGGAATGTA+AGG | + | chr1_3:42630141-42630160 | None:intergenic | 45.0% | |
| ! | TCAAGACGAGCTGATTTCGA+CGG | + | chr1_3:42630151-42630170 | None:intergenic | 45.0% |
| !! | GCTATGAAGAAAAGCACCGA+TGG | - | chr1_3:42630172-42630191 | Msa0119100:CDS | 45.0% |
| TTTGGCAACTGCAACCAATG+GGG | + | chr1_3:42630465-42630484 | None:intergenic | 45.0% | |
| ! | CTTTTGGCAACTGCAACCAA+TGG | + | chr1_3:42630467-42630486 | None:intergenic | 45.0% |
| ! | TGCCAAAAGCCAGACTTTTG+AGG | - | chr1_3:42630478-42630497 | Msa0119100:intron | 45.0% |
| !!! | TGCCTCAAAAGTCTGGCTTT+TGG | + | chr1_3:42630483-42630502 | None:intergenic | 45.0% |
| AACAGATGCAGCCACTATTG+AGG | + | chr1_3:42630599-42630618 | None:intergenic | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | chr1_3:42630631-42630650 | None:intergenic | 45.0% | |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | chr1_3:42630853-42630872 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | chr1_3:42630854-42630873 | None:intergenic | 45.0% |
| GCTATCAGAAGTCTTACTCC+TGG | - | chr1_3:42631020-42631039 | Msa0119100:intron | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | chr1_3:42631035-42631054 | Msa0119100:intron | 45.0% | |
| CTCTGGATTCTCCTTCAGAT+TGG | - | chr1_3:42631058-42631077 | Msa0119100:intron | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | chr1_3:42631072-42631091 | None:intergenic | 45.0% | |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | chr1_3:42631452-42631471 | None:intergenic | 45.0% |
| TGTCATGTCTTCCACAAACG+AGG | - | chr1_3:42631798-42631817 | Msa0119100:intron | 45.0% | |
| AATCACTGAGACCTCGTTTG+TGG | + | chr1_3:42631812-42631831 | None:intergenic | 45.0% | |
| TCTTGCTCAGAACAGTGTGT+TGG | - | chr1_3:42631942-42631961 | Msa0119100:intron | 45.0% | |
| AACTCCCACAGCAACTTCAT+AGG | + | chr1_3:42631998-42632017 | None:intergenic | 45.0% | |
| GTTGCTGTGGGAGTTTAGAT+TGG | - | chr1_3:42632003-42632022 | Msa0119100:five_prime_UTR | 45.0% | |
| ACAGTGTCCCTTCAATCAGA+AGG | + | chr1_3:42632238-42632257 | None:intergenic | 45.0% | |
| !!! | AAACTTTAATATTTTAAAAT+AGG | + | chr1_3:42628768-42628787 | None:intergenic | 5.0% |
| !!! | ATTTTAAAATATTAAAGTTT+TGG | - | chr1_3:42628768-42628787 | Msa0119100:intron | 5.0% |
| !! | TTTATAATTTAGTAAATATT+GGG | + | chr1_3:42630683-42630702 | None:intergenic | 5.0% |
| !! | ATTTATAATTTAGTAAATAT+TGG | + | chr1_3:42630684-42630703 | None:intergenic | 5.0% |
| !! | GCTAGCAAAGCATTGAGGTG+AGG | + | chr1_3:42627958-42627977 | None:intergenic | 50.0% |
| TACTCGGCCCCTTAAGTATG+TGG | + | chr1_3:42629113-42629132 | None:intergenic | 50.0% | |
| ! | TATCAAGTGCCGCACCACAT+TGG | - | chr1_3:42629131-42629150 | Msa0119100:intron | 50.0% |
| CATATGGGACCAATGTGGTG+CGG | + | chr1_3:42629143-42629162 | None:intergenic | 50.0% | |
| TTGCACCGTGTGGCCTATTA+CGG | + | chr1_3:42629675-42629694 | None:intergenic | 50.0% | |
| ! | CAAGACGAGCTGATTTCGAC+GGG | + | chr1_3:42630150-42630169 | None:intergenic | 50.0% |
| ! | GCACCGATGGGATTCTTAAG+AGG | - | chr1_3:42630185-42630204 | Msa0119100:CDS | 50.0% |
| TCAACAGGTCTGCAGTCATG+TGG | + | chr1_3:42630818-42630837 | None:intergenic | 50.0% | |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | chr1_3:42631085-42631104 | Msa0119100:intron | 50.0% | |
| ! | TTTCTGGCAGGAAAGCCAAG+AGG | - | chr1_3:42631358-42631377 | Msa0119100:intron | 50.0% |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | chr1_3:42631571-42631590 | None:intergenic | 50.0% |
| CGCCCAAAATCACCAAAGCT+TGG | - | chr1_3:42631577-42631596 | Msa0119100:intron | 50.0% | |
| CGCGGTCACGAAAACAGAAA+TGG | - | chr1_3:42631771-42631790 | Msa0119100:intron | 50.0% | |
| GGCCCCTTAAGTATGTGGTC+AGG | + | chr1_3:42629108-42629127 | None:intergenic | 55.0% | |
| GTGGTGCGGCACTTGATACT+CGG | + | chr1_3:42629129-42629148 | None:intergenic | 55.0% | |
| CGTGTGGCCTATTACGGAGT+CGG | + | chr1_3:42629669-42629688 | None:intergenic | 55.0% | |
| CGACTCCGTAATAGGCCACA+CGG | - | chr1_3:42629667-42629686 | Msa0119100:intron | 55.0% | |
| TCTGCAGATGTTGCACCGTG+TGG | + | chr1_3:42629685-42629704 | None:intergenic | 55.0% | |
| ATGGGGTAGACCTCCCAAAC+TGG | + | chr1_3:42630448-42630467 | None:intergenic | 55.0% | |
| GTTTGGGAGGTCTACCCCAT+TGG | - | chr1_3:42630448-42630467 | Msa0119100:intron | 55.0% | |
| GAGCCGTTGCTCTTCTTACC+AGG | + | chr1_3:42631041-42631060 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | chr1_3:42631041-42631060 | Msa0119100:intron | 55.0% | |
| GGGAGTCGTGATTGCGGTCG+TGG | + | chr1_3:42630663-42630682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42627939 | 42632309 | 42627939 | ID=Msa0119100;Name=Msa0119100 |
| chr1_3 | mRNA | 42627939 | 42632309 | 42627939 | ID=Msa0119100-mRNA-1;Parent=Msa0119100;Name=Msa0119100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=368|1|1|1|0.87|0.77|9|289|458 |
| chr1_3 | exon | 42627939 | 42628683 | 42627939 | ID=Msa0119100-mRNA-1:exon:12847;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42628773 | 42628880 | 42628773 | ID=Msa0119100-mRNA-1:exon:12846;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42628990 | 42629061 | 42628990 | ID=Msa0119100-mRNA-1:exon:12845;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42629142 | 42629220 | 42629142 | ID=Msa0119100-mRNA-1:exon:12844;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42629342 | 42629419 | 42629342 | ID=Msa0119100-mRNA-1:exon:12843;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42629741 | 42629799 | 42629741 | ID=Msa0119100-mRNA-1:exon:12842;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42629900 | 42630229 | 42629900 | ID=Msa0119100-mRNA-1:exon:12841;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42630613 | 42630811 | 42630613 | ID=Msa0119100-mRNA-1:exon:12840;Parent=Msa0119100-mRNA-1 |
| chr1_3 | exon | 42631946 | 42632309 | 42631946 | ID=Msa0119100-mRNA-1:exon:12839;Parent=Msa0119100-mRNA-1 |
| chr1_3 | five_prime_UTR | 42631946 | 42632309 | 42631946 | ID=Msa0119100-mRNA-1:five_prime_utr;Parent=Msa0119100-mRNA-1 |
| chr1_3 | five_prime_UTR | 42630808 | 42630811 | 42630808 | ID=Msa0119100-mRNA-1:five_prime_utr;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42630613 | 42630807 | 42630613 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42629900 | 42630229 | 42629900 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42629741 | 42629799 | 42629741 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42629342 | 42629419 | 42629342 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42629142 | 42629220 | 42629142 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42628990 | 42629061 | 42628990 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42628773 | 42628880 | 42628773 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | CDS | 42628228 | 42628683 | 42628228 | ID=Msa0119100-mRNA-1:cds;Parent=Msa0119100-mRNA-1 |
| chr1_3 | three_prime_UTR | 42627939 | 42628227 | 42627939 | ID=Msa0119100-mRNA-1:three_prime_utr;Parent=Msa0119100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
