Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119520 | XP_013441806.1 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119520 | sp|Q54GN8|NSA2_DICDI | 72.308 | 260 | 72 | 0 | 1 | 260 | 1 | 260 | 3.00e-140 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119520 | A0A072TF50 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071640 | Msa0119520 | 0.825622 | 4.240090e-54 | -8.615850e-47 |
| Msa0119520 | Msa0316140 | 0.815568 | 8.650293e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119520 | MtrunA17_Chr1g0177701 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Msa0119520 | MtrunA17_Chr3g0125641 | 91.923 | 260 | 21 | 0 | 1 | 260 | 1 | 260 | 8.13e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119520 | AT5G06360.1 | 86.923 | 260 | 34 | 0 | 1 | 260 | 1 | 260 | 4.88e-172 | 475 |
Find 93 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTATTGTTCTATTTATT+TGG | 0.108486 | 1_3:-43547715 | Msa0119520:three_prime_UTR |
| ACATTCAATCTTGAAATTAT+TGG | 0.186081 | 1_3:-43548676 | Msa0119520:CDS |
| AGCTGTTCCTGCTTATCTTT+TGG | 0.213713 | 1_3:-43549659 | Msa0119520:CDS |
| TATAAATTTGTCAGATTCAT+TGG | 0.242444 | 1_3:+43547643 | None:intergenic |
| TCAAGTATGGGAGGCGGCTT+AGG | 0.277832 | 1_3:+43551227 | None:intergenic |
| GACCGTCACATAAAAGAAAA+TGG | 0.314189 | 1_3:-43550220 | Msa0119520:CDS |
| AGCCTCTCTCTTGCGCTTGC+GGG | 0.318070 | 1_3:+43550177 | None:intergenic |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 1_3:+43547950 | None:intergenic |
| GAAACAGACTATTGGTCTTA+AGG | 0.346482 | 1_3:-43550008 | Msa0119520:intron |
| CAGGTGAATGTCAGCGAACT+TGG | 0.351479 | 1_3:-43548104 | Msa0119520:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.354471 | 1_3:-43549486 | Msa0119520:CDS |
| GAGGTGTACATGGGGCCATT+AGG | 0.355093 | 1_3:+43548640 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 1_3:+43548691 | None:intergenic |
| GTCGAGAAGCTACTCTCGTT+GGG | 0.361027 | 1_3:+43551199 | None:intergenic |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.369119 | 1_3:-43549487 | Msa0119520:CDS |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 1_3:-43548621 | Msa0119520:CDS |
| GGTTCACAACCACTCTAAAA+AGG | 0.386198 | 1_3:-43550149 | Msa0119520:CDS |
| AGGTGTACATGGGGCCATTA+GGG | 0.387835 | 1_3:+43548641 | None:intergenic |
| TGATTACTTCTTGCACTTGA+AGG | 0.400236 | 1_3:-43547676 | Msa0119520:three_prime_UTR |
| AAACAGACTATTGGTCTTAA+GGG | 0.408363 | 1_3:-43550007 | Msa0119520:intron |
| ATTCGAGTGAAACAGACTAT+TGG | 0.411760 | 1_3:-43550016 | Msa0119520:intron |
| CGAATGAATCGCTCATACTT+TGG | 0.413112 | 1_3:+43548754 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 1_3:-43549686 | Msa0119520:CDS |
| TTGAGTACCTTGGTGTTAAA+CGG | 0.420705 | 1_3:+43551145 | None:intergenic |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 1_3:+43547951 | None:intergenic |
| AAACTAGTTCAGTTTATAAC+GGG | 0.426344 | 1_3:+43550443 | None:intergenic |
| GGAAAAGGGTTAAACCTTCT+GGG | 0.431363 | 1_3:+43550126 | None:intergenic |
| GTTACAAAAGCAACATTTGT+TGG | 0.433060 | 1_3:-43548799 | Msa0119520:CDS |
| ATAAATTTGTCAGATTCATT+GGG | 0.434495 | 1_3:+43547644 | None:intergenic |
| AAAACTAGTTCAGTTTATAA+CGG | 0.449796 | 1_3:+43550442 | None:intergenic |
| TTACAAAAGCAACATTTGTT+GGG | 0.454651 | 1_3:-43548798 | Msa0119520:CDS |
| GGCCCCATGTACACCTCTCT+TGG | 0.465138 | 1_3:-43548634 | Msa0119520:CDS |
| GGTGTTAAACGGTGGCAGTC+TGG | 0.468442 | 1_3:+43551156 | None:intergenic |
| CTTGGACTGGTTACACCTGC+AGG | 0.473860 | 1_3:-43548086 | Msa0119520:CDS |
| CGACAAAATCTTGGGTATCA+AGG | 0.474515 | 1_3:+43547790 | None:intergenic |
| GAGCCTCTCTCTTGCGCTTG+CGG | 0.475580 | 1_3:+43550176 | None:intergenic |
| CCGAAAAGGCACAGATGAAA+AGG | 0.477452 | 1_3:-43549958 | Msa0119520:CDS |
| TACTACAACATGACAGTGTC+CGG | 0.485770 | 1_3:+43547737 | None:intergenic |
| CGACTGACATACCTTTGCTC+TGG | 0.490585 | 1_3:+43549621 | None:intergenic |
| AAAGCAACATTTGTTGGGCC+TGG | 0.494371 | 1_3:-43548793 | Msa0119520:CDS |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 1_3:+43549289 | None:intergenic |
| CAAGTATGGGAGGCGGCTTA+GGG | 0.498970 | 1_3:+43551228 | None:intergenic |
| GAGCGATTCATTCGTCCCAC+TGG | 0.500866 | 1_3:-43548745 | Msa0119520:CDS |
| ATGAATCGCTCATACTTTGG+TGG | 0.502666 | 1_3:+43548757 | None:intergenic |
| TGTCGAGAAGCTACTCTCGT+TGG | 0.503204 | 1_3:+43551198 | None:intergenic |
| GAATGTCAGCGAACTTGGAC+TGG | 0.509662 | 1_3:-43548099 | Msa0119520:CDS |
| CCCCACACAACTTTCCCTGC+AGG | 0.510551 | 1_3:+43548071 | None:intergenic |
| TCACGATCCAAAAGATAAGC+AGG | 0.510830 | 1_3:+43549652 | None:intergenic |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 1_3:+43548603 | None:intergenic |
| ACCTGCAGGGAAAGTTGTGT+GGG | 0.521487 | 1_3:-43548072 | Msa0119520:CDS |
| GGGGATTCAAGTATGGGAGG+CGG | 0.522070 | 1_3:+43551221 | None:intergenic |
| GACACCAAGAGAGGTGTACA+TGG | 0.523657 | 1_3:+43548630 | None:intergenic |
| TGCGGGTTTCGTGATCGAAA+CGG | 0.524765 | 1_3:+43550194 | None:intergenic |
| CTATTGGTCTTAAGGGAAAG+AGG | 0.536215 | 1_3:-43550000 | Msa0119520:CDS |
| TTTAAGGTCAGATCAAGCAT+TGG | 0.541841 | 1_3:-43547897 | Msa0119520:exon |
| CACCTGCAGGGAAAGTTGTG+TGG | 0.542031 | 1_3:-43548073 | Msa0119520:CDS |
| TGCAATCTCACCTTAGGTAG+AGG | 0.542351 | 1_3:+43549458 | None:intergenic |
| AACCCGCAAGCGCAAGAGAG+AGG | 0.557787 | 1_3:-43550179 | Msa0119520:CDS |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 1_3:-43549468 | Msa0119520:intron |
| ATAACGGGACTCTTTCGCCT+CGG | 0.563585 | 1_3:+43550458 | None:intergenic |
| ATTTCCTCAGGTACGTCCTG+TGG | 0.566309 | 1_3:-43549305 | Msa0119520:intron |
| CATCGAATGTTTAACAGTAG+CGG | 0.567038 | 1_3:+43547824 | None:intergenic |
| TCGAGAAGCTACTCTCGTTG+GGG | 0.570830 | 1_3:+43551200 | None:intergenic |
| GCGCAAGAGAGAGGCTCGTG+AGG | 0.578621 | 1_3:-43550170 | Msa0119520:CDS |
| AAGGTCAGATCAAGCATTGG+AGG | 0.579837 | 1_3:-43547894 | Msa0119520:three_prime_UTR |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 1_3:-43549271 | Msa0119520:CDS |
| TTCCAGTGGTATTGAAGGTG+TGG | 0.581269 | 1_3:-43550503 | Msa0119520:intron |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 1_3:-43548605 | Msa0119520:intron |
| AGCTAAGCAATGGAAGAGAA+TGG | 0.593298 | 1_3:-43548821 | Msa0119520:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.594561 | 1_3:-43547968 | Msa0119520:intron |
| ACCAACAACCCAGAAAATGA+TGG | 0.595399 | 1_3:-43547943 | Msa0119520:CDS |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 1_3:-43548620 | Msa0119520:CDS |
| CGAGAAGCTACTCTCGTTGG+GGG | 0.607653 | 1_3:+43551201 | None:intergenic |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 1_3:-43548619 | Msa0119520:CDS |
| TGCATGAAGAGTCAACATCT+AGG | 0.620336 | 1_3:-43549711 | Msa0119520:CDS |
| TGAAAACACAACCAGAGCAA+AGG | 0.620353 | 1_3:-43549632 | Msa0119520:intron |
| GTTAAACGGTGGCAGTCTGG+CGG | 0.629453 | 1_3:+43551159 | None:intergenic |
| ACACCAAGAGAGGTGTACAT+GGG | 0.632419 | 1_3:+43548631 | None:intergenic |
| TTTAGTGAAACGCAATCCAG+TGG | 0.635182 | 1_3:+43548729 | None:intergenic |
| TTGGACTGGTTACACCTGCA+GGG | 0.646148 | 1_3:-43548085 | Msa0119520:CDS |
| AGAGTCAACATCTAGGCGCA+AGG | 0.652247 | 1_3:-43549704 | Msa0119520:CDS |
| GCTGATGATAATGTTCAGGA+AGG | 0.654350 | 1_3:-43549682 | Msa0119520:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 1_3:+43548621 | None:intergenic |
| CAACACATGCTATAAAGCCG+AGG | 0.665525 | 1_3:-43550475 | Msa0119520:five_prime_UTR |
| GAGAAGCTACTCTCGTTGGG+GGG | 0.670279 | 1_3:+43551202 | None:intergenic |
| TTAGTGAAACGCAATCCAGT+GGG | 0.670436 | 1_3:+43548730 | None:intergenic |
| CGGTCTATATGATCTCCTTG+AGG | 0.680493 | 1_3:+43550238 | None:intergenic |
| CACCAAGAGAGGTGTACATG+GGG | 0.684428 | 1_3:+43548632 | None:intergenic |
| AGTACCTTGGTGTTAAACGG+TGG | 0.687544 | 1_3:+43551148 | None:intergenic |
| GGGTTTCGTGATCGAAACGG+CGG | 0.704227 | 1_3:+43550197 | None:intergenic |
| ACTGCCACCGTTTAACACCA+AGG | 0.704788 | 1_3:-43551152 | Msa0119520:intron |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 1_3:-43549281 | Msa0119520:CDS |
| CCTGCAGGGAAAGTTGTGTG+GGG | 0.734788 | 1_3:-43548071 | Msa0119520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTATTTCTTAATTAT+AGG | - | chr1_3:43549741-43549760 | Msa0119520:intron | 10.0% |
| !!! | AAATCTAAAATCAAATTTTG+TGG | - | chr1_3:43547787-43547806 | Msa0119520:three_prime_UTR | 15.0% |
| !!! | ATTTTGTGGTTTTTATAATT+TGG | - | chr1_3:43547801-43547820 | Msa0119520:three_prime_UTR | 15.0% |
| !!! | CAATCTTTTAAAATTATAAC+CGG | - | chr1_3:43548057-43548076 | Msa0119520:intron | 15.0% |
| !!! | AATCTTTTAAAATTATAACC+GGG | - | chr1_3:43548058-43548077 | Msa0119520:intron | 15.0% |
| !!! | TAAGAAATAAACATATTTTC+TGG | + | chr1_3:43549736-43549755 | None:intergenic | 15.0% |
| !! | ATACTATTGTTCTATTTATT+TGG | - | chr1_3:43551085-43551104 | Msa0119520:intron | 15.0% |
| !!! | TGAAGTAATTTTAAATTGTA+TGG | - | chr1_3:43551181-43551200 | Msa0119520:five_prime_UTR | 15.0% |
| !!! | GAAGTAATTTTAAATTGTAT+GGG | - | chr1_3:43551182-43551201 | Msa0119520:five_prime_UTR | 15.0% |
| !! | ATTCGATAAATTTGAAGATT+AGG | + | chr1_3:43547724-43547743 | None:intergenic | 20.0% |
| !!! | TTAAAATTACATTTTTCCAG+TGG | - | chr1_3:43548283-43548302 | Msa0119520:intron | 20.0% |
| !! | AAAACTAGTTCAGTTTATAA+CGG | + | chr1_3:43548361-43548380 | None:intergenic | 20.0% |
| !! | GCATAAAATGTTAAAGTAAT+TGG | + | chr1_3:43548725-43548744 | None:intergenic | 20.0% |
| !! | TATATTGTCATAAATCTAAC+TGG | - | chr1_3:43548750-43548769 | Msa0119520:CDS | 20.0% |
| !! | ATATTGTCATAAATCTAACT+GGG | - | chr1_3:43548751-43548770 | Msa0119520:CDS | 20.0% |
| !! | TGTTATATTTCATGTGTTTA+TGG | - | chr1_3:43548906-43548925 | Msa0119520:intron | 20.0% |
| !! | ACGTTATTATAACTCAAAAA+AGG | + | chr1_3:43549459-43549478 | None:intergenic | 20.0% |
| !! | TATTGTTAGTATCAAATTCA+TGG | - | chr1_3:43549632-43549651 | Msa0119520:intron | 20.0% |
| !!! | TTTTGATGTTATCATATGAT+GGG | - | chr1_3:43549823-43549842 | Msa0119520:intron | 20.0% |
| !! | ACATTCAATCTTGAAATTAT+TGG | - | chr1_3:43550124-43550143 | Msa0119520:intron | 20.0% |
| !! | AAAACAACTTAGAACTTATA+TGG | - | chr1_3:43550468-43550487 | Msa0119520:five_prime_UTR | 20.0% |
| !! | ATAAATTTGTCAGATTCATT+GGG | + | chr1_3:43551159-43551178 | None:intergenic | 20.0% |
| !! | TATAAATTTGTCAGATTCAT+TGG | + | chr1_3:43551160-43551179 | None:intergenic | 20.0% |
| !! | TTTTTATAATTTGGACCGTT+TGG | - | chr1_3:43547810-43547829 | Msa0119520:three_prime_UTR | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr1_3:43547828-43547847 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGAGCTTATGAA+CGG | - | chr1_3:43547838-43547857 | Msa0119520:three_prime_UTR | 25.0% |
| ! | TAAGCTGCATAAACTATAAA+GGG | + | chr1_3:43547882-43547901 | None:intergenic | 25.0% |
| ! | AAACTAGTTCAGTTTATAAC+GGG | + | chr1_3:43548360-43548379 | None:intergenic | 25.0% |
| !!! | AACTAGTTTTGTGTTTTTAG+TGG | - | chr1_3:43548371-43548390 | Msa0119520:intron | 25.0% |
| ! | ATAAACATCATCAAATGAAG+GGG | + | chr1_3:43548446-43548465 | None:intergenic | 25.0% |
| ! | CATAAACATCATCAAATGAA+GGG | + | chr1_3:43548447-43548466 | None:intergenic | 25.0% |
| ! | ACATAAACATCATCAAATGA+AGG | + | chr1_3:43548448-43548467 | None:intergenic | 25.0% |
| !!! | TTACATCCCTATTTTGATTT+TGG | - | chr1_3:43548509-43548528 | Msa0119520:intron | 25.0% |
| ! | ACGAAACCAAAATCAAAATA+GGG | + | chr1_3:43548518-43548537 | None:intergenic | 25.0% |
| ! | GTTGATGTTAGATAATAAGT+AGG | - | chr1_3:43548992-43549011 | Msa0119520:intron | 25.0% |
| !!! | TAAGTAGGTTTTGATAGATA+TGG | - | chr1_3:43549007-43549026 | Msa0119520:intron | 25.0% |
| ! | AGAAAAAACAAATACAGAGT+GGG | + | chr1_3:43549396-43549415 | None:intergenic | 25.0% |
| ! | AAGAAAAAACAAATACAGAG+TGG | + | chr1_3:43549397-43549416 | None:intergenic | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr1_3:43549551-43549570 | None:intergenic | 25.0% |
| ! | AAGAGTAAGTATTACATCTA+TGG | - | chr1_3:43549559-43549578 | Msa0119520:intron | 25.0% |
| !!! | GTTTTGATGTTATCATATGA+TGG | - | chr1_3:43549822-43549841 | Msa0119520:intron | 25.0% |
| ! | AATACATTGTAAGCACATTA+CGG | - | chr1_3:43549887-43549906 | Msa0119520:intron | 25.0% |
| ! | TTACAAAAGCAACATTTGTT+GGG | - | chr1_3:43550002-43550021 | Msa0119520:CDS | 25.0% |
| !!! | AAATATAGCTTTAGTCTGTT+TGG | - | chr1_3:43550336-43550355 | Msa0119520:intron | 25.0% |
| ! | TATTCTATGAGCAATTAACA+AGG | - | chr1_3:43550562-43550581 | Msa0119520:intron | 25.0% |
| ! | GAATCATTATCAAAATGTGT+TGG | - | chr1_3:43550649-43550668 | Msa0119520:intron | 25.0% |
| ! | ATTATTTGGCACTTATATCT+TGG | - | chr1_3:43550756-43550775 | Msa0119520:intron | 25.0% |
| ! | TTTAACTGATATTGATGCAT+TGG | - | chr1_3:43550799-43550818 | Msa0119520:intron | 25.0% |
| !! | TTGGATTTTTATATGAATGC+AGG | - | chr1_3:43550818-43550837 | Msa0119520:intron | 25.0% |
| !!! | AATGCTGTTTTACTTGTTTA+AGG | - | chr1_3:43550887-43550906 | Msa0119520:intron | 25.0% |
| !!! | AATGGCGAAAATTTTTTGTT+TGG | - | chr1_3:43551038-43551057 | Msa0119520:intron | 25.0% |
| !!! | GAAAATTTTTTGTTTGGATC+CGG | - | chr1_3:43551044-43551063 | Msa0119520:intron | 25.0% |
| !! | AAGATGAACAACATTTTAAG+TGG | - | chr1_3:43551229-43551248 | Msa0119520:five_prime_UTR | 25.0% |
| TAGAATTCCAATAACAAGAG+AGG | + | chr1_3:43547768-43547787 | None:intergenic | 30.0% | |
| CTAAGCTGCATAAACTATAA+AGG | + | chr1_3:43547883-43547902 | None:intergenic | 30.0% | |
| !!! | TTCGACAGTTTCACATTTTT+TGG | - | chr1_3:43548201-43548220 | Msa0119520:intron | 30.0% |
| !!! | TTGTGTTTTTAGTGGTTACT+TGG | - | chr1_3:43548379-43548398 | Msa0119520:intron | 30.0% |
| !! | TCATTTTCAAGAGACAACAA+TGG | - | chr1_3:43548405-43548424 | Msa0119520:intron | 30.0% |
| ACAGTAACAGAAAATTCTTG+AGG | + | chr1_3:43548481-43548500 | None:intergenic | 30.0% | |
| GACGAAACCAAAATCAAAAT+AGG | + | chr1_3:43548519-43548538 | None:intergenic | 30.0% | |
| !! | TTTGTATCATTTTAGCCTCA+AGG | - | chr1_3:43548547-43548566 | Msa0119520:intron | 30.0% |
| !! | AAACAGACTATTGGTCTTAA+GGG | - | chr1_3:43548793-43548812 | Msa0119520:CDS | 30.0% |
| ! | CTTTTCGGCATAATTTTTCT+TGG | + | chr1_3:43548830-43548849 | None:intergenic | 30.0% |
| CAAGAAAAATTATGCCGAAA+AGG | - | chr1_3:43548828-43548847 | Msa0119520:intron | 30.0% | |
| TTAGTGTATTCAAGAGTTGT+TGG | - | chr1_3:43548970-43548989 | Msa0119520:intron | 30.0% | |
| ! | ATGTGTATTTTCATTTCCTC+AGG | - | chr1_3:43549483-43549502 | Msa0119520:CDS | 30.0% |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr1_3:43549519-43549538 | Msa0119520:intron | 30.0% | |
| ! | GGCTTCTAGTATTATGATTT+TGG | - | chr1_3:43549580-43549599 | Msa0119520:intron | 30.0% |
| ATTTCAATCATGTCATCACA+TGG | + | chr1_3:43549608-43549627 | None:intergenic | 30.0% | |
| ATGTGATGACATGATTGAAA+TGG | - | chr1_3:43549607-43549626 | Msa0119520:intron | 30.0% | |
| TGTGATGACATGATTGAAAT+GGG | - | chr1_3:43549608-43549627 | Msa0119520:intron | 30.0% | |
| CTACATCCATAAACAAAAAG+GGG | + | chr1_3:43549713-43549732 | None:intergenic | 30.0% | |
| GCTACATCCATAAACAAAAA+GGG | + | chr1_3:43549714-43549733 | None:intergenic | 30.0% | |
| ! | TTGAGATGCTGAAATTTTTG+TGG | - | chr1_3:43549764-43549783 | Msa0119520:intron | 30.0% |
| ! | TGAGATGCTGAAATTTTTGT+GGG | - | chr1_3:43549765-43549784 | Msa0119520:intron | 30.0% |
| AAAACACAATGACTTAGAGT+TGG | + | chr1_3:43549807-43549826 | None:intergenic | 30.0% | |
| ATACATTGTAAGCACATTAC+GGG | - | chr1_3:43549888-43549907 | Msa0119520:intron | 30.0% | |
| ATCAATATGCATGCAATCTA+AGG | + | chr1_3:43549915-43549934 | None:intergenic | 30.0% | |
| GTTACAAAAGCAACATTTGT+TGG | - | chr1_3:43550001-43550020 | Msa0119520:CDS | 30.0% | |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr1_3:43550112-43550131 | None:intergenic | 30.0% |
| ATTTCATGCACTTCTAATTG+AGG | - | chr1_3:43550225-43550244 | Msa0119520:CDS | 30.0% | |
| ! | TTTTCCGTTCTCACAATTTA+AGG | - | chr1_3:43550255-43550274 | Msa0119520:intron | 30.0% |
| !! | GTTGTTTTCATAATCTATCC+TGG | + | chr1_3:43550456-43550475 | None:intergenic | 30.0% |
| AGTACGTGAGTAAATGAAAA+GGG | + | chr1_3:43550606-43550625 | None:intergenic | 30.0% | |
| AAGTACGTGAGTAAATGAAA+AGG | + | chr1_3:43550607-43550626 | None:intergenic | 30.0% | |
| !! | AAATGTGTTGGTCATTTTCT+TGG | - | chr1_3:43550661-43550680 | Msa0119520:intron | 30.0% |
| ATATCTTGGTTTCATCATCA+TGG | - | chr1_3:43550770-43550789 | Msa0119520:intron | 30.0% | |
| ! | TTATGCAACCATCATTTTCT+GGG | + | chr1_3:43550868-43550887 | None:intergenic | 30.0% |
| ! | TTTATGCAACCATCATTTTC+TGG | + | chr1_3:43550869-43550888 | None:intergenic | 30.0% |
| ! | ATTTTTCCCGACAAAATCTT+GGG | + | chr1_3:43551021-43551040 | None:intergenic | 30.0% |
| !! | CATTTTAAGTGGCTACATTT+TGG | - | chr1_3:43551240-43551259 | Msa0119520:five_prime_UTR | 30.0% |
| !! | TTGAGTACCTTGGTGTTAAA+CGG | + | chr1_3:43547658-43547677 | None:intergenic | 35.0% |
| GTTTATGCAGCTTAGTGAAT+TGG | - | chr1_3:43547888-43547907 | Msa0119520:three_prime_UTR | 35.0% | |
| TCATACTTTCTCTGTAGCAA+CGG | - | chr1_3:43547991-43548010 | Msa0119520:intron | 35.0% | |
| TAGAATGTAACCACATGTGT+CGG | + | chr1_3:43548032-43548051 | None:intergenic | 35.0% | |
| CAGATTAGACATCTCTAACT+TGG | + | chr1_3:43548140-43548159 | None:intergenic | 35.0% | |
| !!! | GACAGTTTCACATTTTTTGG+TGG | - | chr1_3:43548204-43548223 | Msa0119520:intron | 35.0% |
| !! | CATTTTTCCAGTGGTATTGA+AGG | - | chr1_3:43548292-43548311 | Msa0119520:intron | 35.0% |
| GACCGTCACATAAAAGAAAA+TGG | - | chr1_3:43548580-43548599 | Msa0119520:intron | 35.0% | |
| !! | GGCCATTTTCTTTTATGTGA+CGG | + | chr1_3:43548585-43548604 | None:intergenic | 35.0% |
| TCGATAGAAGAAGAGGAAAA+GGG | + | chr1_3:43548691-43548710 | None:intergenic | 35.0% | |
| TTCGATAGAAGAAGAGGAAA+AGG | + | chr1_3:43548692-43548711 | None:intergenic | 35.0% | |
| ! | AAAGTGTTCGATAGAAGAAG+AGG | + | chr1_3:43548698-43548717 | None:intergenic | 35.0% |
| ATTCGAGTGAAACAGACTAT+TGG | - | chr1_3:43548784-43548803 | Msa0119520:CDS | 35.0% | |
| !! | GAAACAGACTATTGGTCTTA+AGG | - | chr1_3:43548792-43548811 | Msa0119520:CDS | 35.0% |
| GCAACACCATTAAGCAAAAA+AGG | - | chr1_3:43549292-43549311 | Msa0119520:CDS | 35.0% | |
| CACCATTAAGCAAAAAAGGA+AGG | - | chr1_3:43549296-43549315 | Msa0119520:CDS | 35.0% | |
| !!! | CTCCTTCCTTTTTTGCTTAA+TGG | + | chr1_3:43549301-43549320 | None:intergenic | 35.0% |
| TAAGCAAAAAAGGAAGGAGA+AGG | - | chr1_3:43549302-43549321 | Msa0119520:intron | 35.0% | |
| AACAAATACAGAGTGGGAAT+TGG | + | chr1_3:43549390-43549409 | None:intergenic | 35.0% | |
| TCTTTAGCAAAGAAAGAAGC+AGG | - | chr1_3:43549413-43549432 | Msa0119520:intron | 35.0% | |
| CTTTAGCAAAGAAAGAAGCA+GGG | - | chr1_3:43549414-43549433 | Msa0119520:intron | 35.0% | |
| ATCCATAAACAAAAAGGGGA+GGG | + | chr1_3:43549709-43549728 | None:intergenic | 35.0% | |
| GGCTACATCCATAAACAAAA+AGG | + | chr1_3:43549715-43549734 | None:intergenic | 35.0% | |
| TACATTGTAAGCACATTACG+GGG | - | chr1_3:43549889-43549908 | Msa0119520:intron | 35.0% | |
| GAAGCAGATCTGATTGTATA+TGG | - | chr1_3:43549943-43549962 | Msa0119520:intron | 35.0% | |
| ! | ATCATTTTGCAGCTAAGCAA+TGG | - | chr1_3:43549969-43549988 | Msa0119520:CDS | 35.0% |
| GATGCCTTAAATTGTGAGAA+CGG | + | chr1_3:43550262-43550281 | None:intergenic | 35.0% | |
| AGTGATTGAAAAGGTCATGT+GGG | + | chr1_3:43550294-43550313 | None:intergenic | 35.0% | |
| GTACATGTCAGTGATTGAAA+AGG | + | chr1_3:43550303-43550322 | None:intergenic | 35.0% | |
| AGACTGTTTGAGAGAGTTTA+TGG | - | chr1_3:43550400-43550419 | Msa0119520:five_prime_UTR | 35.0% | |
| TAAATGAAAAGGGTTCTGTG+TGG | + | chr1_3:43550596-43550615 | None:intergenic | 35.0% | |
| TTCTTGGTTACTGTGATTTC+AGG | - | chr1_3:43550677-43550696 | Msa0119520:intron | 35.0% | |
| TTGTGTGGGGTAAGATTATT+TGG | - | chr1_3:43550742-43550761 | Msa0119520:intron | 35.0% | |
| ! | TTTAAGGTCAGATCAAGCAT+TGG | - | chr1_3:43550903-43550922 | Msa0119520:intron | 35.0% |
| ACTACAAAAATCATGTGAGC+AGG | + | chr1_3:43550938-43550957 | None:intergenic | 35.0% | |
| ! | CATGATTTTTGTAGTCACGT+AGG | - | chr1_3:43550943-43550962 | Msa0119520:intron | 35.0% |
| CATCGAATGTTTAACAGTAG+CGG | + | chr1_3:43550979-43550998 | None:intergenic | 35.0% | |
| ! | CTTGATACCCAAGATTTTGT+CGG | - | chr1_3:43551011-43551030 | Msa0119520:intron | 35.0% |
| ! | TTGATACCCAAGATTTTGTC+GGG | - | chr1_3:43551012-43551031 | Msa0119520:intron | 35.0% |
| ! | CATTTTTCCCGACAAAATCT+TGG | + | chr1_3:43551022-43551041 | None:intergenic | 35.0% |
| ! | CAAGATTTTGTCGGGAAAAA+TGG | - | chr1_3:43551020-43551039 | Msa0119520:intron | 35.0% |
| TGATTACTTCTTGCACTTGA+AGG | - | chr1_3:43551124-43551143 | Msa0119520:intron | 35.0% | |
| GAAGCGAAAATTGAGTACCT+TGG | + | chr1_3:43547668-43547687 | None:intergenic | 40.0% | |
| GCAGCTTAGTGAATTGGATT+AGG | - | chr1_3:43547894-43547913 | Msa0119520:three_prime_UTR | 40.0% | |
| TAACTTGGCAACAAACAGAG+AGG | + | chr1_3:43548125-43548144 | None:intergenic | 40.0% | |
| ! | GGTTCACAACCACTCTAAAA+AGG | - | chr1_3:43548651-43548670 | Msa0119520:CDS | 40.0% |
| GGAAAAGGGTTAAACCTTCT+GGG | + | chr1_3:43548677-43548696 | None:intergenic | 40.0% | |
| AGGAAAAGGGTTAAACCTTC+TGG | + | chr1_3:43548678-43548697 | None:intergenic | 40.0% | |
| !! | CTATTGGTCTTAAGGGAAAG+AGG | - | chr1_3:43548800-43548819 | Msa0119520:CDS | 40.0% |
| ! | CCTTTTCATCTGTGCCTTTT+CGG | + | chr1_3:43548845-43548864 | None:intergenic | 40.0% |
| TGCATGAAGAGTCAACATCT+AGG | - | chr1_3:43549089-43549108 | Msa0119520:intron | 40.0% | |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr1_3:43549114-43549133 | Msa0119520:intron | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+AGG | - | chr1_3:43549118-43549137 | Msa0119520:intron | 40.0% |
| ! | AGCTGTTCCTGCTTATCTTT+TGG | - | chr1_3:43549141-43549160 | Msa0119520:intron | 40.0% |
| TCACGATCCAAAAGATAAGC+AGG | + | chr1_3:43549151-43549170 | None:intergenic | 40.0% | |
| TGAAAACACAACCAGAGCAA+AGG | - | chr1_3:43549168-43549187 | Msa0119520:intron | 40.0% | |
| AACTGTCTTCCAAAACAGCA+TGG | + | chr1_3:43549207-43549226 | None:intergenic | 40.0% | |
| TTGATTCTCTTGCACACTCT+AGG | - | chr1_3:43549234-43549253 | Msa0119520:intron | 40.0% | |
| AAAAAAGGAAGGAGAAGGCT+GGG | - | chr1_3:43549307-43549326 | Msa0119520:intron | 40.0% | |
| TGAATGTGCAATCTCACCTT+AGG | + | chr1_3:43549351-43549370 | None:intergenic | 40.0% | |
| AAGCAGGGAAAGACATGAAA+CGG | - | chr1_3:43549429-43549448 | Msa0119520:intron | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr1_3:43549514-43549533 | None:intergenic | 40.0% | |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr1_3:43549546-43549565 | None:intergenic | 40.0% |
| TCCATAAACAAAAAGGGGAG+GGG | + | chr1_3:43549708-43549727 | None:intergenic | 40.0% | |
| CATCCATAAACAAAAAGGGG+AGG | + | chr1_3:43549710-43549729 | None:intergenic | 40.0% | |
| ! | GATGCTGAAATTTTTGTGGG+CGG | - | chr1_3:43549768-43549787 | Msa0119520:intron | 40.0% |
| AGCTAAGCAATGGAAGAGAA+TGG | - | chr1_3:43549979-43549998 | Msa0119520:CDS | 40.0% | |
| !! | CTCATACTTTGGTGGTTTTC+TGG | + | chr1_3:43550038-43550057 | None:intergenic | 40.0% |
| ATGAATCGCTCATACTTTGG+TGG | + | chr1_3:43550046-43550065 | None:intergenic | 40.0% | |
| CGAATGAATCGCTCATACTT+TGG | + | chr1_3:43550049-43550068 | None:intergenic | 40.0% | |
| TTAGTGAAACGCAATCCAGT+GGG | + | chr1_3:43550073-43550092 | None:intergenic | 40.0% | |
| TTTAGTGAAACGCAATCCAG+TGG | + | chr1_3:43550074-43550093 | None:intergenic | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr1_3:43550145-43550164 | Msa0119520:CDS | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr1_3:43550195-43550214 | Msa0119520:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr1_3:43550200-43550219 | None:intergenic | 40.0% | |
| CAGTGATTGAAAAGGTCATG+TGG | + | chr1_3:43550295-43550314 | None:intergenic | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr1_3:43550857-43550876 | Msa0119520:intron | 40.0% | |
| ! | ACCATCATTTTCTGGGTTGT+TGG | + | chr1_3:43550861-43550880 | None:intergenic | 40.0% |
| CGACAAAATCTTGGGTATCA+AGG | + | chr1_3:43551013-43551032 | None:intergenic | 40.0% | |
| TACTACAACATGACAGTGTC+CGG | + | chr1_3:43551066-43551085 | None:intergenic | 40.0% | |
| !! | AGTACCTTGGTGTTAAACGG+TGG | + | chr1_3:43547655-43547674 | None:intergenic | 45.0% |
| ! | CCAATAACAAGAGAGGTGTG+AGG | + | chr1_3:43547761-43547780 | None:intergenic | 45.0% |
| ! | CCTCACACCTCTCTTGTTAT+TGG | - | chr1_3:43547758-43547777 | Msa0119520:three_prime_UTR | 45.0% |
| TTGATAGACACCGACACATG+TGG | - | chr1_3:43548019-43548038 | Msa0119520:intron | 45.0% | |
| TTACTGACACGAACACATCC+CGG | + | chr1_3:43548079-43548098 | None:intergenic | 45.0% | |
| ! | TTCCAGTGGTATTGAAGGTG+TGG | - | chr1_3:43548297-43548316 | Msa0119520:intron | 45.0% |
| CAACACATGCTATAAAGCCG+AGG | - | chr1_3:43548325-43548344 | Msa0119520:intron | 45.0% | |
| CGGTCTATATGATCTCCTTG+AGG | + | chr1_3:43548565-43548584 | None:intergenic | 45.0% | |
| ! | CCGAAAAGGCACAGATGAAA+AGG | - | chr1_3:43548842-43548861 | Msa0119520:intron | 45.0% |
| GCTCTTGTCTGTCAACAGTT+TGG | - | chr1_3:43549063-43549082 | Msa0119520:intron | 45.0% | |
| CAAAAAAGGAAGGAGAAGGC+TGG | - | chr1_3:43549306-43549325 | Msa0119520:intron | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr1_3:43549332-43549351 | Msa0119520:intron | 45.0% | |
| TGCAATCTCACCTTAGGTAG+AGG | + | chr1_3:43549345-43549364 | None:intergenic | 45.0% | |
| AGCAGGGAAAGACATGAAAC+GGG | - | chr1_3:43549430-43549449 | Msa0119520:intron | 45.0% | |
| GGAGGGGACAAAGAATGATA+AGG | + | chr1_3:43549692-43549711 | None:intergenic | 45.0% | |
| !! | TCCCCTCCCCTTTTTGTTTA+TGG | - | chr1_3:43549704-43549723 | Msa0119520:CDS | 45.0% |
| ! | AAAGCAACATTTGTTGGGCC+TGG | - | chr1_3:43550007-43550026 | Msa0119520:intron | 45.0% |
| !! | GGTGGTTTTCTGGTAAAACC+AGG | + | chr1_3:43550028-43550047 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+GGG | + | chr1_3:43550172-43550191 | None:intergenic | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr1_3:43550180-43550199 | Msa0119520:CDS | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr1_3:43550181-43550200 | Msa0119520:CDS | 45.0% |
| ACAATGTTCATACGCTCTCC+AGG | - | chr1_3:43550435-43550454 | Msa0119520:five_prime_UTR | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr1_3:43550832-43550851 | Msa0119520:intron | 45.0% | |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr1_3:43550852-43550871 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr1_3:43550853-43550872 | None:intergenic | 45.0% |
| !! | AAGGTCAGATCAAGCATTGG+AGG | - | chr1_3:43550906-43550925 | Msa0119520:intron | 45.0% |
| CGTTGGGGGGATTCAAGTAT+GGG | + | chr1_3:43547588-43547607 | None:intergenic | 50.0% | |
| TCGTTGGGGGGATTCAAGTA+TGG | + | chr1_3:43547589-43547608 | None:intergenic | 50.0% | |
| TCGAGAAGCTACTCTCGTTG+GGG | + | chr1_3:43547603-43547622 | None:intergenic | 50.0% | |
| GTCGAGAAGCTACTCTCGTT+GGG | + | chr1_3:43547604-43547623 | None:intergenic | 50.0% | |
| TGTCGAGAAGCTACTCTCGT+TGG | + | chr1_3:43547605-43547624 | None:intergenic | 50.0% | |
| ACTGCCACCGTTTAACACCA+AGG | - | chr1_3:43547648-43547667 | Msa0119520:three_prime_UTR | 50.0% | |
| GAACGGAACATCGTCTGAGA+CGG | - | chr1_3:43547855-43547874 | Msa0119520:three_prime_UTR | 50.0% | |
| ! | AACGGAACATCGTCTGAGAC+GGG | - | chr1_3:43547856-43547875 | Msa0119520:three_prime_UTR | 50.0% |
| CACCACACCTTCAATACCAC+TGG | + | chr1_3:43548302-43548321 | None:intergenic | 50.0% | |
| ! | ATAACGGGACTCTTTCGCCT+CGG | + | chr1_3:43548345-43548364 | None:intergenic | 50.0% |
| TGCGGGTTTCGTGATCGAAA+CGG | + | chr1_3:43548609-43548628 | None:intergenic | 50.0% | |
| !! | CCTTCTGGGCCTTTTTAGAG+TGG | + | chr1_3:43548663-43548682 | None:intergenic | 50.0% |
| ! | CCACTCTAAAAAGGCCCAGA+AGG | - | chr1_3:43548660-43548679 | Msa0119520:CDS | 50.0% |
| AGAGTCAACATCTAGGCGCA+AGG | - | chr1_3:43549096-43549115 | Msa0119520:intron | 50.0% | |
| CGACTGACATACCTTTGCTC+TGG | + | chr1_3:43549182-43549201 | None:intergenic | 50.0% | |
| !! | TCAGTCGTGCCATGCTGTTT+TGG | - | chr1_3:43549195-43549214 | Msa0119520:intron | 50.0% |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr1_3:43549314-43549333 | Msa0119520:intron | 50.0% | |
| GCAGGGAAAGACATGAAACG+GGG | - | chr1_3:43549431-43549450 | Msa0119520:intron | 50.0% | |
| ATTTCCTCAGGTACGTCCTG+TGG | - | chr1_3:43549495-43549514 | Msa0119520:CDS | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr1_3:43549529-43549548 | Msa0119520:intron | 50.0% | |
| AGGTGTACATGGGGCCATTA+GGG | + | chr1_3:43550162-43550181 | None:intergenic | 50.0% | |
| ! | CACCAAGAGAGGTGTACATG+GGG | + | chr1_3:43550171-43550190 | None:intergenic | 50.0% |
| ! | GACACCAAGAGAGGTGTACA+TGG | + | chr1_3:43550173-43550192 | None:intergenic | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr1_3:43550182-43550201 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr1_3:43550179-43550198 | Msa0119520:CDS | 50.0% |
| CAGGTGAATGTCAGCGAACT+TGG | - | chr1_3:43550696-43550715 | Msa0119520:intron | 50.0% | |
| GAATGTCAGCGAACTTGGAC+TGG | - | chr1_3:43550701-43550720 | Msa0119520:intron | 50.0% | |
| !! | TTGGACTGGTTACACCTGCA+GGG | - | chr1_3:43550715-43550734 | Msa0119520:intron | 50.0% |
| ACCTGCAGGGAAAGTTGTGT+GGG | - | chr1_3:43550728-43550747 | Msa0119520:intron | 50.0% | |
| CAAGTATGGGAGGCGGCTTA+GGG | + | chr1_3:43547575-43547594 | None:intergenic | 55.0% | |
| TCAAGTATGGGAGGCGGCTT+AGG | + | chr1_3:43547576-43547595 | None:intergenic | 55.0% | |
| GGGGATTCAAGTATGGGAGG+CGG | + | chr1_3:43547582-43547601 | None:intergenic | 55.0% | |
| TGGGGGGATTCAAGTATGGG+AGG | + | chr1_3:43547585-43547604 | None:intergenic | 55.0% | |
| GAGAAGCTACTCTCGTTGGG+GGG | + | chr1_3:43547601-43547620 | None:intergenic | 55.0% | |
| CGAGAAGCTACTCTCGTTGG+GGG | + | chr1_3:43547602-43547621 | None:intergenic | 55.0% | |
| GTTAAACGGTGGCAGTCTGG+CGG | + | chr1_3:43547644-43547663 | None:intergenic | 55.0% | |
| GGTGTTAAACGGTGGCAGTC+TGG | + | chr1_3:43547647-43547666 | None:intergenic | 55.0% | |
| GGGTTTCGTGATCGAAACGG+CGG | + | chr1_3:43548606-43548625 | None:intergenic | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr1_3:43549313-43549332 | Msa0119520:intron | 55.0% | |
| GAGCGATTCATTCGTCCCAC+TGG | - | chr1_3:43550055-43550074 | Msa0119520:intron | 55.0% | |
| GAGGTGTACATGGGGCCATT+AGG | + | chr1_3:43550163-43550182 | None:intergenic | 55.0% | |
| !! | CTTGGACTGGTTACACCTGC+AGG | - | chr1_3:43550714-43550733 | Msa0119520:intron | 55.0% |
| CACCTGCAGGGAAAGTTGTG+TGG | - | chr1_3:43550727-43550746 | Msa0119520:intron | 55.0% | |
| CCTGCAGGGAAAGTTGTGTG+GGG | - | chr1_3:43550729-43550748 | Msa0119520:intron | 55.0% | |
| AACCCGCAAGCGCAAGAGAG+AGG | - | chr1_3:43548621-43548640 | Msa0119520:CDS | 60.0% | |
| AGCCTCTCTCTTGCGCTTGC+GGG | + | chr1_3:43548626-43548645 | None:intergenic | 60.0% | |
| GAGCCTCTCTCTTGCGCTTG+CGG | + | chr1_3:43548627-43548646 | None:intergenic | 60.0% | |
| TCAGCCACAGGACGTACCTG+AGG | + | chr1_3:43549502-43549521 | None:intergenic | 60.0% | |
| GGCCCCATGTACACCTCTCT+TGG | - | chr1_3:43550166-43550185 | Msa0119520:CDS | 60.0% | |
| CCCCACACAACTTTCCCTGC+AGG | + | chr1_3:43550732-43550751 | None:intergenic | 60.0% | |
| GCGCAAGAGAGAGGCTCGTG+AGG | - | chr1_3:43548630-43548649 | Msa0119520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 43547533 | 43551289 | 43547533 | ID=Msa0119520;Name=Msa0119520 |
| chr1_3 | mRNA | 43547533 | 43551289 | 43547533 | ID=Msa0119520-mRNA-1;Parent=Msa0119520;Name=Msa0119520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|0.8|0.63|11|350|260 |
| chr1_3 | exon | 43547533 | 43547590 | 43547533 | ID=Msa0119520-mRNA-1:exon:13082;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43547623 | 43547982 | 43547623 | ID=Msa0119520-mRNA-1:exon:13081;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43548072 | 43548123 | 43548072 | ID=Msa0119520-mRNA-1:exon:13080;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43548606 | 43548841 | 43548606 | ID=Msa0119520-mRNA-1:exon:13079;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43549260 | 43549317 | 43549260 | ID=Msa0119520-mRNA-1:exon:13078;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43549469 | 43549537 | 43549469 | ID=Msa0119520-mRNA-1:exon:13077;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43549633 | 43549741 | 43549633 | ID=Msa0119520-mRNA-1:exon:13076;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43549956 | 43550023 | 43549956 | ID=Msa0119520-mRNA-1:exon:13075;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43550141 | 43550260 | 43550141 | ID=Msa0119520-mRNA-1:exon:13074;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43550396 | 43550519 | 43550396 | ID=Msa0119520-mRNA-1:exon:13073;Parent=Msa0119520-mRNA-1 |
| chr1_3 | exon | 43551153 | 43551289 | 43551153 | ID=Msa0119520-mRNA-1:exon:13072;Parent=Msa0119520-mRNA-1 |
| chr1_3 | five_prime_UTR | 43551153 | 43551289 | 43551153 | ID=Msa0119520-mRNA-1:five_prime_utr;Parent=Msa0119520-mRNA-1 |
| chr1_3 | five_prime_UTR | 43550399 | 43550519 | 43550399 | ID=Msa0119520-mRNA-1:five_prime_utr;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43550396 | 43550398 | 43550396 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43550141 | 43550260 | 43550141 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43549956 | 43550023 | 43549956 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43549633 | 43549741 | 43549633 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43549469 | 43549537 | 43549469 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43549260 | 43549317 | 43549260 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43548606 | 43548841 | 43548606 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43548072 | 43548123 | 43548072 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | CDS | 43547915 | 43547982 | 43547915 | ID=Msa0119520-mRNA-1:cds;Parent=Msa0119520-mRNA-1 |
| chr1_3 | three_prime_UTR | 43547623 | 43547914 | 43547623 | ID=Msa0119520-mRNA-1:three_prime_utr;Parent=Msa0119520-mRNA-1 |
| chr1_3 | three_prime_UTR | 43547533 | 43547590 | 43547533 | ID=Msa0119520-mRNA-1:three_prime_utr;Parent=Msa0119520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
