Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071640 | XP_013441806.1 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071640 | sp|Q54GN8|NSA2_DICDI | 72.308 | 260 | 72 | 0 | 1 | 260 | 1 | 260 | 3.00e-140 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071640 | A0A072TF50 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0071640 | -0.800498 | 1.401046e-48 | -8.615850e-47 |
| Msa0025060 | Msa0071640 | -0.808863 | 2.512503e-50 | -8.615850e-47 |
| Msa0025090 | Msa0071640 | -0.814236 | 1.707602e-51 | -8.615850e-47 |
| Msa0025690 | Msa0071640 | -0.811147 | 8.096793e-51 | -8.615850e-47 |
| Msa0027610 | Msa0071640 | -0.803079 | 4.136360e-49 | -8.615850e-47 |
| Msa0029730 | Msa0071640 | 0.826095 | 3.273033e-54 | -8.615850e-47 |
| Msa0036560 | Msa0071640 | -0.836340 | 9.911305e-57 | -8.615850e-47 |
| Msa0037230 | Msa0071640 | 0.831977 | 1.229102e-55 | -8.615850e-47 |
| Msa0071640 | Msa0075370 | -0.824535 | 7.660175e-54 | -8.615850e-47 |
| Msa0071640 | Msa0081700 | -0.808724 | 2.690768e-50 | -8.615850e-47 |
| Msa0071640 | Msa0085020 | 0.804935 | 1.700899e-49 | -8.615850e-47 |
| Msa0071640 | Msa0089540 | 0.805021 | 1.632192e-49 | -8.615850e-47 |
| Msa0071640 | Msa0090350 | -0.811828 | 5.758161e-51 | -8.615850e-47 |
| Msa0071640 | Msa0099090 | -0.844622 | 6.745162e-59 | -8.615850e-47 |
| Msa0071640 | Msa0106810 | -0.806468 | 8.106601e-50 | -8.615850e-47 |
| Msa0071640 | Msa0119520 | 0.825622 | 4.240090e-54 | -8.615850e-47 |
| Msa0071640 | Msa0121460 | -0.814161 | 1.773931e-51 | -8.615850e-47 |
| Msa0071640 | Msa0121480 | -0.811549 | 6.623699e-51 | -8.615850e-47 |
| Msa0071640 | Msa0137810 | -0.805445 | 1.330127e-49 | -8.615850e-47 |
| Msa0071640 | Msa0139280 | -0.852612 | 4.117885e-61 | -8.615850e-47 |
| Msa0071640 | Msa0153290 | -0.815438 | 9.244929e-52 | -8.615850e-47 |
| Msa0071640 | Msa0167800 | -0.807132 | 5.870034e-50 | -8.615850e-47 |
| Msa0071640 | Msa0169710 | 0.856879 | 2.386494e-62 | -8.615850e-47 |
| Msa0071640 | Msa0176610 | -0.829152 | 6.039285e-55 | -8.615850e-47 |
| Msa0071640 | Msa0177940 | 0.804600 | 1.998216e-49 | -8.615850e-47 |
| Msa0071640 | Msa0182100 | 0.814833 | 1.259380e-51 | -8.615850e-47 |
| Msa0071640 | Msa0183840 | 0.851287 | 9.790746e-61 | -8.615850e-47 |
| Msa0071640 | Msa0184030 | -0.815408 | 9.389186e-52 | -8.615850e-47 |
| Msa0071640 | Msa0188740 | 0.858173 | 9.882639e-63 | -8.615850e-47 |
| Msa0071640 | Msa0192300 | 0.814080 | 1.848109e-51 | -8.615850e-47 |
| Msa0071640 | Msa0192890 | 0.825142 | 5.507427e-54 | -8.615850e-47 |
| Msa0071640 | Msa0195030 | 0.835342 | 1.774002e-56 | -8.615850e-47 |
| Msa0071640 | Msa0196530 | 0.840449 | 8.635324e-58 | -8.615850e-47 |
| Msa0071640 | Msa0226580 | -0.829336 | 5.448439e-55 | -8.615850e-47 |
| Msa0071640 | Msa0237180 | 0.844499 | 7.281370e-59 | -8.615850e-47 |
| Msa0071640 | Msa0238420 | 0.843845 | 1.090601e-58 | -8.615850e-47 |
| Msa0071640 | Msa0266380 | -0.838654 | 2.529209e-57 | -8.615850e-47 |
| Msa0071640 | Msa0270160 | 0.858186 | 9.789294e-63 | -8.615850e-47 |
| Msa0071640 | Msa0274940 | 0.839218 | 1.807467e-57 | -8.615850e-47 |
| Msa0071640 | Msa0275890 | 0.800076 | 1.707373e-48 | -8.615850e-47 |
| Msa0071640 | Msa0281330 | 0.844955 | 5.487262e-59 | -8.615850e-47 |
| Msa0071640 | Msa0281370 | 0.834160 | 3.519814e-56 | -8.615850e-47 |
| Msa0071640 | Msa0283230 | 0.807871 | 4.089818e-50 | -8.615850e-47 |
| Msa0071640 | Msa0301250 | 0.804874 | 1.752172e-49 | -8.615850e-47 |
| Msa0071640 | Msa0304350 | -0.809733 | 1.635198e-50 | -8.615850e-47 |
| Msa0071640 | Msa0305910 | -0.808514 | 2.983069e-50 | -8.615850e-47 |
| Msa0071640 | Msa0313060 | 0.826706 | 2.341157e-54 | -8.615850e-47 |
| Msa0071640 | Msa0313680 | 0.811933 | 5.464116e-51 | -8.615850e-47 |
| Msa0071640 | Msa0315660 | 0.842813 | 2.055431e-58 | -8.615850e-47 |
| Msa0071640 | Msa0316140 | 0.828195 | 1.028918e-54 | -8.615850e-47 |
| Msa0071640 | Msa0340830 | -0.807217 | 5.631002e-50 | -8.615850e-47 |
| Msa0071640 | Msa0340870 | -0.806198 | 9.241538e-50 | -8.615850e-47 |
| Msa0071640 | Msa0341860 | -0.844601 | 6.833583e-59 | -8.615850e-47 |
| Msa0071640 | Msa0370350 | -0.841740 | 3.954867e-58 | -8.615850e-47 |
| Msa0071640 | Msa0371490 | 0.824833 | 6.513262e-54 | -8.615850e-47 |
| Msa0071640 | Msa0372100 | 0.827560 | 1.462326e-54 | -8.615850e-47 |
| Msa0071640 | Msa0378620 | -0.832807 | 7.656016e-56 | -8.615850e-47 |
| Msa0071640 | Msa0380590 | 0.837330 | 5.540327e-57 | -8.615850e-47 |
| Msa0071640 | Msa0382670 | 0.800071 | 1.711404e-48 | -8.615850e-47 |
| Msa0071640 | Msa0388520 | 0.811667 | 6.242546e-51 | -8.615850e-47 |
| Msa0071640 | Msa0416470 | 0.832554 | 8.847639e-56 | -8.615850e-47 |
| Msa0071640 | Msa0417850 | -0.817349 | 3.454171e-52 | -8.615850e-47 |
| Msa0071640 | Msa0432260 | -0.818972 | 1.482825e-52 | -8.615850e-47 |
| Msa0071640 | Msa0452120 | -0.806975 | 6.336123e-50 | -8.615850e-47 |
| Msa0071640 | Msa0476730 | -0.816937 | 4.274937e-52 | -8.615850e-47 |
| Msa0071640 | Msa0480940 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
| Msa0071640 | Msa0500420 | 0.835335 | 1.781817e-56 | -8.615850e-47 |
| Msa0071640 | Msa0521100 | -0.827399 | 1.598514e-54 | -8.615850e-47 |
| Msa0071640 | Msa0521730 | 0.828043 | 1.119668e-54 | -8.615850e-47 |
| Msa0071640 | Msa0540120 | -0.827569 | 1.455218e-54 | -8.615850e-47 |
| Msa0071640 | Msa0540160 | -0.828903 | 6.940782e-55 | -8.615850e-47 |
| Msa0071640 | Msa0555510 | -0.806887 | 6.611102e-50 | -8.615850e-47 |
| Msa0071640 | Msa0573550 | 0.817308 | 3.527074e-52 | -8.615850e-47 |
| Msa0071640 | Msa0574780 | 0.812018 | 5.234309e-51 | -8.615850e-47 |
| Msa0071640 | Msa0602900 | 0.800522 | 1.385401e-48 | -8.615850e-47 |
| Msa0071640 | Msa0609120 | 0.815451 | 9.185470e-52 | -8.615850e-47 |
| Msa0071640 | Msa0619230 | 0.801190 | 1.012211e-48 | -8.615850e-47 |
| Msa0071640 | Msa0621190 | 0.814001 | 1.924119e-51 | -8.615850e-47 |
| Msa0071640 | Msa0623360 | -0.804612 | 1.987315e-49 | -8.615850e-47 |
| Msa0071640 | Msa0643960 | 0.800663 | 1.296626e-48 | -8.615850e-47 |
| Msa0071640 | Msa0649530 | -0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa0071640 | Msa0674680 | -0.835160 | 1.972686e-56 | -8.615850e-47 |
| Msa0071640 | Msa0691740 | -0.807919 | 3.995077e-50 | -8.615850e-47 |
| Msa0071640 | Msa0712580 | -0.806459 | 8.141383e-50 | -8.615850e-47 |
| Msa0071640 | Msa0790450 | 0.873178 | 1.798458e-67 | -8.615850e-47 |
| Msa0071640 | Msa0880050 | 0.810493 | 1.121396e-50 | -8.615850e-47 |
| Msa0071640 | Msa0924590 | -0.815737 | 7.931455e-52 | -8.615850e-47 |
| Msa0071640 | Msa0929700 | 0.800410 | 1.460204e-48 | -8.615850e-47 |
| Msa0071640 | Msa0930890 | 0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0071640 | Msa0931830 | -0.802320 | 5.932174e-49 | -8.615850e-47 |
| Msa0071640 | Msa0985040 | -0.801176 | 1.018748e-48 | -8.615850e-47 |
| Msa0071640 | Msa1025200 | 0.808906 | 2.459618e-50 | -8.615850e-47 |
| Msa0071640 | Msa1025220 | 0.826495 | 2.629554e-54 | -8.615850e-47 |
| Msa0071640 | Msa1047020 | 0.805719 | 1.165593e-49 | -8.615850e-47 |
| Msa0071640 | Msa1068660 | 0.840393 | 8.935086e-58 | -8.615850e-47 |
| Msa0071640 | Msa1076200 | 0.809275 | 2.050412e-50 | -8.615850e-47 |
| Msa0071640 | Msa1078480 | 0.814894 | 1.221107e-51 | -8.615850e-47 |
| Msa0071640 | Msa1078640 | 0.819697 | 1.013414e-52 | -8.615850e-47 |
| Msa0071640 | Msa1082050 | 0.815119 | 1.088247e-51 | -8.615850e-47 |
| Msa0071640 | Msa1093190 | -0.818095 | 2.343675e-52 | -8.615850e-47 |
| Msa0071640 | Msa1102090 | 0.812022 | 5.224393e-51 | -8.615850e-47 |
| Msa0071640 | Msa1124980 | 0.814551 | 1.454254e-51 | -8.615850e-47 |
| Msa0071640 | Msa1126690 | 0.824281 | 8.789755e-54 | -8.615850e-47 |
| Msa0071640 | Msa1128780 | -0.805958 | 1.038153e-49 | -8.615850e-47 |
| Msa0071640 | Msa1156830 | 0.860623 | 1.814868e-63 | -8.615850e-47 |
| Msa0071640 | Msa1163320 | 0.832988 | 6.901276e-56 | -8.615850e-47 |
| Msa0071640 | Msa1167360 | 0.810110 | 1.356297e-50 | -8.615850e-47 |
| Msa0071640 | Msa1194480 | -0.803756 | 2.994109e-49 | -8.615850e-47 |
| Msa0071640 | Msa1203090 | -0.809901 | 1.504448e-50 | -8.615850e-47 |
| Msa0071640 | Msa1204390 | -0.805496 | 1.298163e-49 | -8.615850e-47 |
| Msa0071640 | Msa1207880 | 0.820443 | 6.840930e-53 | -8.615850e-47 |
| Msa0071640 | Msa1230190 | -0.810190 | 1.303927e-50 | -8.615850e-47 |
| Msa0071640 | Msa1251500 | 0.806751 | 7.063775e-50 | -8.615850e-47 |
| Msa0071640 | Msa1263610 | -0.804036 | 2.619153e-49 | -8.615850e-47 |
| Msa0071640 | Msa1272770 | -0.807701 | 4.444700e-50 | -8.615850e-47 |
| Msa0071640 | Msa1286950 | -0.835264 | 1.856412e-56 | -8.615850e-47 |
| Msa0071640 | Msa1295840 | -0.807185 | 5.719730e-50 | -8.615850e-47 |
| Msa0071640 | Msa1296610 | -0.826725 | 2.316972e-54 | -8.615850e-47 |
| Msa0071640 | Msa1319230 | -0.831646 | 1.483174e-55 | -8.615850e-47 |
| Msa0071640 | Msa1329020 | -0.817354 | 3.445164e-52 | -8.615850e-47 |
| Msa0071640 | Msa1339310 | -0.806136 | 9.525735e-50 | -8.615850e-47 |
| Msa0071640 | Msa1346920 | -0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa0071640 | Msa1347610 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0071640 | Msa1351020 | 0.812248 | 4.665174e-51 | -8.615850e-47 |
| Msa0071640 | Msa1363270 | -0.806421 | 8.292127e-50 | -8.615850e-47 |
| Msa0071640 | Msa1390760 | 0.807078 | 6.026182e-50 | -8.615850e-47 |
| Msa0071640 | Msa1395700 | -0.839434 | 1.587997e-57 | -8.615850e-47 |
| Msa0071640 | Msa1398310 | -0.801546 | 8.556126e-49 | -8.615850e-47 |
| Msa0071640 | Msa1403520 | 0.833446 | 5.309651e-56 | -8.615850e-47 |
| Msa0071640 | Msa1407550 | 0.803088 | 4.119562e-49 | -8.615850e-47 |
| Msa0071640 | Msa1423050 | 0.806154 | 9.438902e-50 | -8.615850e-47 |
| Msa0071640 | Msa1432250 | -0.810701 | 1.011230e-50 | -8.615850e-47 |
| Msa0071640 | Msa1433380 | -0.824878 | 6.359166e-54 | -8.615850e-47 |
| Msa0071640 | Msa1446510 | 0.833203 | 6.104470e-56 | -8.615850e-47 |
| Msa0071640 | Msa1450560 | 0.868141 | 8.138538e-66 | -8.615850e-47 |
| Msa0071640 | Msa1450850 | -0.812177 | 4.833449e-51 | -8.615850e-47 |
| Msa0071640 | Msa1459630 | -0.815917 | 7.231169e-52 | -8.615850e-47 |
| Msa0071640 | Msa1466530 | 0.810170 | 1.316835e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071640 | MtrunA17_Chr1g0177701 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| Msa0071640 | MtrunA17_Chr3g0125641 | 91.923 | 260 | 21 | 0 | 1 | 260 | 1 | 260 | 8.13e-175 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071640 | AT5G06360.1 | 86.923 | 260 | 34 | 0 | 1 | 260 | 1 | 260 | 4.88e-172 | 475 |
Find 92 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTATTGTTCTATTTATT+TGG | 0.108486 | 1_2:-43710724 | Msa0071640:three_prime_UTR |
| ACATTCAATCTTGAAATTAT+TGG | 0.186081 | 1_2:-43711685 | Msa0071640:CDS |
| AGCTGTTCCTGCTTATCTTT+TGG | 0.213713 | 1_2:-43712668 | Msa0071640:CDS |
| TATAAATTTGTCAGATTCAT+TGG | 0.242444 | 1_2:+43710652 | None:intergenic |
| TCAAGTATGGGAGGCGGCTT+AGG | 0.277832 | 1_2:+43714222 | None:intergenic |
| GACCGTCACATAAAAGAAAA+TGG | 0.314189 | 1_2:-43713230 | Msa0071640:CDS |
| AGCCTCTCTCTTGCGCTTGC+GGG | 0.318070 | 1_2:+43713187 | None:intergenic |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 1_2:+43710959 | None:intergenic |
| GAAACAGACTATTGGTCTTA+AGG | 0.346482 | 1_2:-43713018 | Msa0071640:intron |
| CAGGTGAATGTTAGCGAACT+TGG | 0.350084 | 1_2:-43711113 | Msa0071640:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.354471 | 1_2:-43712495 | Msa0071640:CDS |
| GAGGTGTACATGGGGCCATT+AGG | 0.355093 | 1_2:+43711649 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 1_2:+43711700 | None:intergenic |
| GTCGAGAAGCTACTCTCGTT+GGG | 0.361027 | 1_2:+43714194 | None:intergenic |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.369119 | 1_2:-43712496 | Msa0071640:CDS |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 1_2:-43711630 | Msa0071640:CDS |
| GGTTCACAACCACTCTAAAA+AGG | 0.386198 | 1_2:-43713159 | Msa0071640:CDS |
| AGGTGTACATGGGGCCATTA+GGG | 0.387835 | 1_2:+43711650 | None:intergenic |
| TGATTACTTCTTGCACTTGA+AGG | 0.400236 | 1_2:-43710685 | Msa0071640:three_prime_UTR |
| AAACAGACTATTGGTCTTAA+GGG | 0.408363 | 1_2:-43713017 | Msa0071640:intron |
| ATTCGAGTGAAACAGACTAT+TGG | 0.411760 | 1_2:-43713026 | Msa0071640:intron |
| CGAATGAATCGCTCATACTT+TGG | 0.413112 | 1_2:+43711763 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 1_2:-43712695 | Msa0071640:CDS |
| TTGAGTACCTTGGTGTTAAA+CGG | 0.420705 | 1_2:+43714140 | None:intergenic |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 1_2:+43710960 | None:intergenic |
| AAACTAGTTCAGTTTATAAC+GGG | 0.426344 | 1_2:+43713453 | None:intergenic |
| GAATGTTAGCGAACTTGGTC+TGG | 0.429135 | 1_2:-43711108 | Msa0071640:CDS |
| GGAAAAGGGTTAAACCTTCT+GGG | 0.431363 | 1_2:+43713136 | None:intergenic |
| GTTACAAAAGCAACATTTGT+TGG | 0.433060 | 1_2:-43711808 | Msa0071640:CDS |
| ATAAATTTGTCAGATTCATT+GGG | 0.434495 | 1_2:+43710653 | None:intergenic |
| CTTGGTCTGGTTACTCCTGC+AGG | 0.441454 | 1_2:-43711095 | Msa0071640:CDS |
| AAAACTAGTTCAGTTTATAA+CGG | 0.449796 | 1_2:+43713452 | None:intergenic |
| TTACAAAAGCAACATTTGTT+GGG | 0.454651 | 1_2:-43711807 | Msa0071640:CDS |
| GGCCCCATGTACACCTCTCT+TGG | 0.465138 | 1_2:-43711643 | Msa0071640:CDS |
| GGTGTTAAACGGTGGCAGTC+TGG | 0.468442 | 1_2:+43714151 | None:intergenic |
| GAGCCTCTCTCTTGCGCTTG+CGG | 0.475580 | 1_2:+43713186 | None:intergenic |
| AGACAAAATCTTAGGTATCA+AGG | 0.477192 | 1_2:+43710799 | None:intergenic |
| TACTACAACATGACAGTGTC+CGG | 0.485770 | 1_2:+43710746 | None:intergenic |
| CTCCTGCAGGGAAAGTTGTG+TGG | 0.490342 | 1_2:-43711082 | Msa0071640:CDS |
| AAAGCAACATTTGTTGGGCC+TGG | 0.494371 | 1_2:-43711802 | Msa0071640:CDS |
| TCCTGCAGGGAAAGTTGTGT+GGG | 0.494940 | 1_2:-43711081 | Msa0071640:CDS |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 1_2:+43712298 | None:intergenic |
| CAAGTATGGGAGGCGGCTTA+GGG | 0.498970 | 1_2:+43714223 | None:intergenic |
| GAGCGATTCATTCGTCCCAC+TGG | 0.500866 | 1_2:-43711754 | Msa0071640:CDS |
| ATGAATCGCTCATACTTTGG+TGG | 0.502666 | 1_2:+43711766 | None:intergenic |
| TGTCGAGAAGCTACTCTCGT+TGG | 0.503204 | 1_2:+43714193 | None:intergenic |
| TCACGATCCAAAAGATAAGC+AGG | 0.510830 | 1_2:+43712661 | None:intergenic |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 1_2:+43711612 | None:intergenic |
| CCCCACACAACTTTCCCTGC+AGG | 0.521638 | 1_2:+43711080 | None:intergenic |
| GGGGATTCAAGTATGGGAGG+CGG | 0.522070 | 1_2:+43714216 | None:intergenic |
| GACACCAAGAGAGGTGTACA+TGG | 0.523657 | 1_2:+43711639 | None:intergenic |
| TGCGGGTTTCGTGATCGAAA+CGG | 0.524765 | 1_2:+43713204 | None:intergenic |
| CTATTGGTCTTAAGGGAAAG+AGG | 0.536215 | 1_2:-43713010 | Msa0071640:CDS |
| CGACTGACATACCTTTGCTC+TGG | 0.539758 | 1_2:+43712630 | None:intergenic |
| TTTAAGGTCAGATCAAGCAT+TGG | 0.541841 | 1_2:-43710906 | Msa0071640:exon |
| TGCAATCTCACCTTAGGTAG+AGG | 0.542351 | 1_2:+43712467 | None:intergenic |
| AACCCGCAAGCGCAAGAGAG+AGG | 0.557787 | 1_2:-43713189 | Msa0071640:CDS |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 1_2:-43712477 | Msa0071640:intron |
| ATAACGGGACTCTTTCGCCT+CGG | 0.563585 | 1_2:+43713468 | None:intergenic |
| ATTTCCTCAGGTACGTCCTG+TGG | 0.566309 | 1_2:-43712314 | Msa0071640:intron |
| CATCGAATGTTTAACAGTAG+CGG | 0.567038 | 1_2:+43710833 | None:intergenic |
| TCGAGAAGCTACTCTCGTTG+GGG | 0.570830 | 1_2:+43714195 | None:intergenic |
| GCGCAAGAGAGAGGCTCGTG+AGG | 0.578621 | 1_2:-43713180 | Msa0071640:CDS |
| AAGGTCAGATCAAGCATTGG+AGG | 0.579837 | 1_2:-43710903 | Msa0071640:three_prime_UTR |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 1_2:-43712280 | Msa0071640:CDS |
| TTCCAGTGGTATTGAAGGTG+TGG | 0.581269 | 1_2:-43713513 | Msa0071640:intron |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 1_2:-43711614 | Msa0071640:intron |
| AGCTAAGCAATGGAAGAGAA+TGG | 0.593298 | 1_2:-43711830 | Msa0071640:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.594561 | 1_2:-43710977 | Msa0071640:intron |
| ACCAACAACCCAGAAAATGA+TGG | 0.595399 | 1_2:-43710952 | Msa0071640:CDS |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 1_2:-43711629 | Msa0071640:CDS |
| CGAGAAGCTACTCTCGTTGG+GGG | 0.607653 | 1_2:+43714196 | None:intergenic |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 1_2:-43711628 | Msa0071640:CDS |
| TGCATGAAGAGTCAACATCT+AGG | 0.620336 | 1_2:-43712720 | Msa0071640:CDS |
| TTGGTCTGGTTACTCCTGCA+GGG | 0.628872 | 1_2:-43711094 | Msa0071640:CDS |
| GTTAAACGGTGGCAGTCTGG+CGG | 0.629453 | 1_2:+43714154 | None:intergenic |
| ACACCAAGAGAGGTGTACAT+GGG | 0.632419 | 1_2:+43711640 | None:intergenic |
| TTTAGTGAAACGCAATCCAG+TGG | 0.635182 | 1_2:+43711738 | None:intergenic |
| TGAAAACACGACCAGAGCAA+AGG | 0.642977 | 1_2:-43712641 | Msa0071640:intron |
| AGAGTCAACATCTAGGCGCA+AGG | 0.652247 | 1_2:-43712713 | Msa0071640:CDS |
| GCTGATGATAATGTTCAGGA+AGG | 0.654350 | 1_2:-43712691 | Msa0071640:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 1_2:+43711630 | None:intergenic |
| CAACACATGCTATAAAGCCG+AGG | 0.665525 | 1_2:-43713485 | Msa0071640:five_prime_UTR |
| GAGAAGCTACTCTCGTTGGG+GGG | 0.670279 | 1_2:+43714197 | None:intergenic |
| TTAGTGAAACGCAATCCAGT+GGG | 0.670436 | 1_2:+43711739 | None:intergenic |
| CGGTCTATATGATCTCCTTG+AGG | 0.680493 | 1_2:+43713248 | None:intergenic |
| CACCAAGAGAGGTGTACATG+GGG | 0.684428 | 1_2:+43711641 | None:intergenic |
| AGTACCTTGGTGTTAAACGG+TGG | 0.687544 | 1_2:+43714143 | None:intergenic |
| GGGTTTCGTGATCGAAACGG+CGG | 0.704227 | 1_2:+43713207 | None:intergenic |
| ACTGCCACCGTTTAACACCA+AGG | 0.704788 | 1_2:-43714147 | Msa0071640:intron |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 1_2:-43712290 | Msa0071640:CDS |
| CCTGCAGGGAAAGTTGTGTG+GGG | 0.725274 | 1_2:-43711080 | Msa0071640:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTATTTCTTAATTAT+AGG | - | chr1_2:43712730-43712749 | Msa0071640:CDS | 10.0% |
| !!! | AAATCTAAAATCAAATTTTG+TGG | - | chr1_2:43710790-43710809 | Msa0071640:three_prime_UTR | 15.0% |
| !!! | ATTTTGTGGTTTTTATAATT+TGG | - | chr1_2:43710804-43710823 | Msa0071640:three_prime_UTR | 15.0% |
| !!! | CAATCTTTTAAAATTATAAC+CGG | - | chr1_2:43711060-43711079 | Msa0071640:intron | 15.0% |
| !!! | AATCTTTTAAAATTATAACC+GGG | - | chr1_2:43711061-43711080 | Msa0071640:intron | 15.0% |
| !!! | TAAGAAATAAACATATTTTC+TGG | + | chr1_2:43712725-43712744 | None:intergenic | 15.0% |
| !! | TATTCTATAAGCAATTAATA+AGG | - | chr1_2:43713551-43713570 | Msa0071640:intron | 15.0% |
| !! | ATACTATTGTTCTATTTATT+TGG | - | chr1_2:43714074-43714093 | Msa0071640:intron | 15.0% |
| !!! | TGAAGTAATTTTAAATTGTA+TGG | - | chr1_2:43714170-43714189 | Msa0071640:five_prime_UTR | 15.0% |
| !!! | GAAGTAATTTTAAATTGTAT+GGG | - | chr1_2:43714171-43714190 | Msa0071640:five_prime_UTR | 15.0% |
| !! | ATTCGATAAATTTGAAGATT+AGG | + | chr1_2:43710727-43710746 | None:intergenic | 20.0% |
| !!! | TTAAAATTACATTTTTCCAG+TGG | - | chr1_2:43711271-43711290 | Msa0071640:intron | 20.0% |
| !! | AAAACTAGTTCAGTTTATAA+CGG | + | chr1_2:43711349-43711368 | None:intergenic | 20.0% |
| !! | GCATAAAATGTTAAAGTAAT+TGG | + | chr1_2:43711713-43711732 | None:intergenic | 20.0% |
| !! | TATATTGTCATAAATCTAAC+TGG | - | chr1_2:43711738-43711757 | Msa0071640:CDS | 20.0% |
| !! | ATATTGTCATAAATCTAACT+GGG | - | chr1_2:43711739-43711758 | Msa0071640:CDS | 20.0% |
| !! | TGTTATATTTCATGTGTTTA+TGG | - | chr1_2:43711895-43711914 | Msa0071640:intron | 20.0% |
| !!! | TAAGTAAGTTTTGATAGATA+TGG | - | chr1_2:43711996-43712015 | Msa0071640:intron | 20.0% |
| !! | ACGTTATTATAACTCAAAAA+AGG | + | chr1_2:43712448-43712467 | None:intergenic | 20.0% |
| !! | TATTGTTAGTATCAAATTCA+TGG | - | chr1_2:43712621-43712640 | Msa0071640:intron | 20.0% |
| !!! | TTTTGATGTTATCATATGAT+GGG | - | chr1_2:43712812-43712831 | Msa0071640:intron | 20.0% |
| !! | ACATTCAATCTTGAAATTAT+TGG | - | chr1_2:43713113-43713132 | Msa0071640:intron | 20.0% |
| !! | AAAACAACTTAGAACTTATA+TGG | - | chr1_2:43713457-43713476 | Msa0071640:five_prime_UTR | 20.0% |
| !! | ATAAATTTGTCAGATTCATT+GGG | + | chr1_2:43714148-43714167 | None:intergenic | 20.0% |
| !! | TATAAATTTGTCAGATTCAT+TGG | + | chr1_2:43714149-43714168 | None:intergenic | 20.0% |
| !! | TTTTTATAATTTGGACCGTT+TGG | - | chr1_2:43710813-43710832 | Msa0071640:three_prime_UTR | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr1_2:43710831-43710850 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGAGCTTATGAA+CGG | - | chr1_2:43710841-43710860 | Msa0071640:three_prime_UTR | 25.0% |
| ! | TAAGCTGCATAAACTATAAA+GGG | + | chr1_2:43710885-43710904 | None:intergenic | 25.0% |
| !!! | TTTGACAGTTTCACATTTTT+TGG | - | chr1_2:43711189-43711208 | Msa0071640:intron | 25.0% |
| ! | AAACTAGTTCAGTTTATAAC+GGG | + | chr1_2:43711348-43711367 | None:intergenic | 25.0% |
| !!! | AACTAGTTTTGTGTTTTTAG+TGG | - | chr1_2:43711359-43711378 | Msa0071640:intron | 25.0% |
| ! | ATAAACATCATCAAATGAAG+GGG | + | chr1_2:43711434-43711453 | None:intergenic | 25.0% |
| ! | CATAAACATCATCAAATGAA+GGG | + | chr1_2:43711435-43711454 | None:intergenic | 25.0% |
| ! | ACATAAACATCATCAAATGA+AGG | + | chr1_2:43711436-43711455 | None:intergenic | 25.0% |
| !!! | TTACATCCCTATTTTGATTT+TGG | - | chr1_2:43711497-43711516 | Msa0071640:intron | 25.0% |
| ! | ACGAAACCAAAATCAAAATA+GGG | + | chr1_2:43711506-43711525 | None:intergenic | 25.0% |
| !!! | TTTTTCGGCATAATTTTTCT+TGG | + | chr1_2:43711818-43711837 | None:intergenic | 25.0% |
| !! | TTAGTGTATTCAAGAGTTTT+TGG | - | chr1_2:43711959-43711978 | Msa0071640:intron | 25.0% |
| ! | TTTGATAGATATGGATTTGT+CGG | - | chr1_2:43712005-43712024 | Msa0071640:intron | 25.0% |
| ! | AGAAAAAACAAATACAGAGT+GGG | + | chr1_2:43712385-43712404 | None:intergenic | 25.0% |
| ! | AAGAAAAAACAAATACAGAG+TGG | + | chr1_2:43712386-43712405 | None:intergenic | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr1_2:43712540-43712559 | None:intergenic | 25.0% |
| ! | AAGAGTAAGTATTACATCTA+TGG | - | chr1_2:43712548-43712567 | Msa0071640:intron | 25.0% |
| !!! | GTTTTGATGTTATCATATGA+TGG | - | chr1_2:43712811-43712830 | Msa0071640:intron | 25.0% |
| ! | AATACATTGTAAGCACATTA+CGG | - | chr1_2:43712876-43712895 | Msa0071640:intron | 25.0% |
| ! | TTACAAAAGCAACATTTGTT+GGG | - | chr1_2:43712991-43713010 | Msa0071640:CDS | 25.0% |
| ! | ATTTCATGCACTTATAATTG+AGG | - | chr1_2:43713214-43713233 | Msa0071640:CDS | 25.0% |
| !!! | AAATATAGCTTTAGTCTGTT+TGG | - | chr1_2:43713325-43713344 | Msa0071640:intron | 25.0% |
| ! | ATTATTTGGCACTTATATCT+TGG | - | chr1_2:43713745-43713764 | Msa0071640:intron | 25.0% |
| ! | TTTAACTGATATTGATGCAT+TGG | - | chr1_2:43713788-43713807 | Msa0071640:intron | 25.0% |
| !! | TTGGATTTTTATATGAATGC+AGG | - | chr1_2:43713807-43713826 | Msa0071640:intron | 25.0% |
| !!! | AATGCTGTTTTACTTGTTTA+AGG | - | chr1_2:43713876-43713895 | Msa0071640:intron | 25.0% |
| !! | ATTTTTCCAGACAAAATCTT+AGG | + | chr1_2:43714010-43714029 | None:intergenic | 25.0% |
| !! | TAAGATTTTGTCTGGAAAAA+TGG | - | chr1_2:43714009-43714028 | Msa0071640:intron | 25.0% |
| !!! | AATGGCGAAATTTTTTTGTT+TGG | - | chr1_2:43714027-43714046 | Msa0071640:intron | 25.0% |
| !!! | GAAATTTTTTTGTTTGGATC+CGG | - | chr1_2:43714033-43714052 | Msa0071640:intron | 25.0% |
| !! | AAGATGAACAACATTTTAAG+TGG | - | chr1_2:43714222-43714241 | Msa0071640:five_prime_UTR | 25.0% |
| TAGAATTCCAATAACAAGAG+AGG | + | chr1_2:43710771-43710790 | None:intergenic | 30.0% | |
| CTAAGCTGCATAAACTATAA+AGG | + | chr1_2:43710886-43710905 | None:intergenic | 30.0% | |
| !!! | TTGTGTTTTTAGTGGTTACT+TGG | - | chr1_2:43711367-43711386 | Msa0071640:intron | 30.0% |
| !! | TCATTTTCAAGAGACAACAA+TGG | - | chr1_2:43711393-43711412 | Msa0071640:intron | 30.0% |
| ACAGTAACAGAAAATTCTTG+AGG | + | chr1_2:43711469-43711488 | None:intergenic | 30.0% | |
| GACGAAACCAAAATCAAAAT+AGG | + | chr1_2:43711507-43711526 | None:intergenic | 30.0% | |
| !! | TTTGTATCATTTTAGCCTCA+AGG | - | chr1_2:43711535-43711554 | Msa0071640:intron | 30.0% |
| !! | AAACAGACTATTGGTCTTAA+GGG | - | chr1_2:43711781-43711800 | Msa0071640:CDS | 30.0% |
| ! | ATGTGTATTTTCATTTCCTC+AGG | - | chr1_2:43712472-43712491 | Msa0071640:intron | 30.0% |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr1_2:43712508-43712527 | Msa0071640:CDS | 30.0% | |
| ! | GGCTTCTAGTATTATGATTT+TGG | - | chr1_2:43712569-43712588 | Msa0071640:intron | 30.0% |
| ATTTCAATCATGTCATCACA+TGG | + | chr1_2:43712597-43712616 | None:intergenic | 30.0% | |
| ATGTGATGACATGATTGAAA+TGG | - | chr1_2:43712596-43712615 | Msa0071640:intron | 30.0% | |
| TGTGATGACATGATTGAAAT+GGG | - | chr1_2:43712597-43712616 | Msa0071640:intron | 30.0% | |
| CTACATCCATAAACAAAAAG+GGG | + | chr1_2:43712702-43712721 | None:intergenic | 30.0% | |
| GCTACATCCATAAACAAAAA+GGG | + | chr1_2:43712703-43712722 | None:intergenic | 30.0% | |
| ! | TTGAGATGCTGAAATTTTTG+TGG | - | chr1_2:43712753-43712772 | Msa0071640:intron | 30.0% |
| ! | TGAGATGCTGAAATTTTTGT+GGG | - | chr1_2:43712754-43712773 | Msa0071640:intron | 30.0% |
| AAAACACAATGACTTAGAGT+TGG | + | chr1_2:43712796-43712815 | None:intergenic | 30.0% | |
| ATACATTGTAAGCACATTAC+GGG | - | chr1_2:43712877-43712896 | Msa0071640:intron | 30.0% | |
| ATCAATATGCATGCAATCTA+AGG | + | chr1_2:43712904-43712923 | None:intergenic | 30.0% | |
| GTTACAAAAGCAACATTTGT+TGG | - | chr1_2:43712990-43713009 | Msa0071640:CDS | 30.0% | |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr1_2:43713101-43713120 | None:intergenic | 30.0% |
| ! | TTTTCCGTTCTCACAATTTA+AGG | - | chr1_2:43713244-43713263 | Msa0071640:CDS | 30.0% |
| !! | GTTGTTTTCATAATCTATCC+TGG | + | chr1_2:43713445-43713464 | None:intergenic | 30.0% |
| AGTACGTGAGTAAATGAAAA+GGG | + | chr1_2:43713595-43713614 | None:intergenic | 30.0% | |
| AAGTACGTGAGTAAATGAAA+AGG | + | chr1_2:43713596-43713615 | None:intergenic | 30.0% | |
| GAATCATTATCAAAACGTGT+TGG | - | chr1_2:43713638-43713657 | Msa0071640:intron | 30.0% | |
| ATATCTTGGTTTCATCATCA+TGG | - | chr1_2:43713759-43713778 | Msa0071640:intron | 30.0% | |
| ! | TTATGCAACCATCATTTTCT+GGG | + | chr1_2:43713857-43713876 | None:intergenic | 30.0% |
| ! | TTTATGCAACCATCATTTTC+TGG | + | chr1_2:43713858-43713877 | None:intergenic | 30.0% |
| AGACAAAATCTTAGGTATCA+AGG | + | chr1_2:43714002-43714021 | None:intergenic | 30.0% | |
| ! | TTGATACCTAAGATTTTGTC+TGG | - | chr1_2:43714001-43714020 | Msa0071640:intron | 30.0% |
| !! | CATTTTAAGTGGCTACATTT+TGG | - | chr1_2:43714233-43714252 | Msa0071640:five_prime_UTR | 30.0% |
| !! | TTGAGTACCTTGGTGTTAAA+CGG | + | chr1_2:43710661-43710680 | None:intergenic | 35.0% |
| GTTTATGCAGCTTAGTGAAT+TGG | - | chr1_2:43710891-43710910 | Msa0071640:three_prime_UTR | 35.0% | |
| TCATACTTTCTCTGTAGCAA+CGG | - | chr1_2:43710994-43711013 | Msa0071640:intron | 35.0% | |
| TAGAATGTAACCACATGTGT+CGG | + | chr1_2:43711035-43711054 | None:intergenic | 35.0% | |
| CAGATTAGACATCTCTAACT+TGG | + | chr1_2:43711143-43711162 | None:intergenic | 35.0% | |
| !!! | GACAGTTTCACATTTTTTGG+TGG | - | chr1_2:43711192-43711211 | Msa0071640:intron | 35.0% |
| !! | CATTTTTCCAGTGGTATTGA+AGG | - | chr1_2:43711280-43711299 | Msa0071640:intron | 35.0% |
| GACCGTCACATAAAAGAAAA+TGG | - | chr1_2:43711568-43711587 | Msa0071640:intron | 35.0% | |
| !! | GGCCATTTTCTTTTATGTGA+CGG | + | chr1_2:43711573-43711592 | None:intergenic | 35.0% |
| TCGATAGAAGAAGAGGAAAA+GGG | + | chr1_2:43711679-43711698 | None:intergenic | 35.0% | |
| TTCGATAGAAGAAGAGGAAA+AGG | + | chr1_2:43711680-43711699 | None:intergenic | 35.0% | |
| ! | AAAGTGTTCGATAGAAGAAG+AGG | + | chr1_2:43711686-43711705 | None:intergenic | 35.0% |
| ATTCGAGTGAAACAGACTAT+TGG | - | chr1_2:43711772-43711791 | Msa0071640:CDS | 35.0% | |
| !! | GAAACAGACTATTGGTCTTA+AGG | - | chr1_2:43711780-43711799 | Msa0071640:CDS | 35.0% |
| !! | CCTTTTCATCTGTGCTTTTT+CGG | + | chr1_2:43711833-43711852 | None:intergenic | 35.0% |
| GCAACACCATTAAGCAAAAA+AGG | - | chr1_2:43712281-43712300 | Msa0071640:CDS | 35.0% | |
| CACCATTAAGCAAAAAAGGA+AGG | - | chr1_2:43712285-43712304 | Msa0071640:CDS | 35.0% | |
| !!! | CTCCTTCCTTTTTTGCTTAA+TGG | + | chr1_2:43712290-43712309 | None:intergenic | 35.0% |
| TAAGCAAAAAAGGAAGGAGA+AGG | - | chr1_2:43712291-43712310 | Msa0071640:CDS | 35.0% | |
| AACAAATACAGAGTGGGAAT+TGG | + | chr1_2:43712379-43712398 | None:intergenic | 35.0% | |
| TCTTTAGCAAAGAAAGAAGC+AGG | - | chr1_2:43712402-43712421 | Msa0071640:intron | 35.0% | |
| CTTTAGCAAAGAAAGAAGCA+GGG | - | chr1_2:43712403-43712422 | Msa0071640:intron | 35.0% | |
| ATCCATAAACAAAAAGGGGA+GGG | + | chr1_2:43712698-43712717 | None:intergenic | 35.0% | |
| GGCTACATCCATAAACAAAA+AGG | + | chr1_2:43712704-43712723 | None:intergenic | 35.0% | |
| TACATTGTAAGCACATTACG+GGG | - | chr1_2:43712878-43712897 | Msa0071640:intron | 35.0% | |
| GAAGCAGATCTGATTGTATA+TGG | - | chr1_2:43712932-43712951 | Msa0071640:intron | 35.0% | |
| ! | ATCATTTTGCAGCTAAGCAA+TGG | - | chr1_2:43712958-43712977 | Msa0071640:intron | 35.0% |
| GATGCCTTAAATTGTGAGAA+CGG | + | chr1_2:43713251-43713270 | None:intergenic | 35.0% | |
| AGTGATTGAAAAGGTCATGT+GGG | + | chr1_2:43713283-43713302 | None:intergenic | 35.0% | |
| GTACATGTCAGTGATTGAAA+AGG | + | chr1_2:43713292-43713311 | None:intergenic | 35.0% | |
| TAAATGAAAAGGGTTCTGTG+TGG | + | chr1_2:43713585-43713604 | None:intergenic | 35.0% | |
| TTGTGTGGGGTAAGATTATT+TGG | - | chr1_2:43713731-43713750 | Msa0071640:intron | 35.0% | |
| ! | TTTAAGGTCAGATCAAGCAT+TGG | - | chr1_2:43713892-43713911 | Msa0071640:intron | 35.0% |
| ACTACAAAAATCATGTGAGC+AGG | + | chr1_2:43713927-43713946 | None:intergenic | 35.0% | |
| ! | CATGATTTTTGTAGTCTCGT+AGG | - | chr1_2:43713932-43713951 | Msa0071640:intron | 35.0% |
| CATCGAATGTTTAACAGTAG+CGG | + | chr1_2:43713968-43713987 | None:intergenic | 35.0% | |
| TGATTACTTCTTGCACTTGA+AGG | - | chr1_2:43714113-43714132 | Msa0071640:intron | 35.0% | |
| GAAGCGAAAATTGAGTACCT+TGG | + | chr1_2:43710671-43710690 | None:intergenic | 40.0% | |
| GCAGCTTAGTGAATTGGATT+AGG | - | chr1_2:43710897-43710916 | Msa0071640:three_prime_UTR | 40.0% | |
| TAACTTGGCAACAAACAGAG+AGG | + | chr1_2:43711128-43711147 | None:intergenic | 40.0% | |
| ! | GGTTCACAACCACTCTAAAA+AGG | - | chr1_2:43711639-43711658 | Msa0071640:CDS | 40.0% |
| GGAAAAGGGTTAAACCTTCT+GGG | + | chr1_2:43711665-43711684 | None:intergenic | 40.0% | |
| AGGAAAAGGGTTAAACCTTC+TGG | + | chr1_2:43711666-43711685 | None:intergenic | 40.0% | |
| !! | CTATTGGTCTTAAGGGAAAG+AGG | - | chr1_2:43711788-43711807 | Msa0071640:CDS | 40.0% |
| ! | CCGAAAAAGCACAGATGAAA+AGG | - | chr1_2:43711830-43711849 | Msa0071640:CDS | 40.0% |
| TGCATGAAGAGTCAACATCT+AGG | - | chr1_2:43712078-43712097 | Msa0071640:intron | 40.0% | |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr1_2:43712103-43712122 | Msa0071640:intron | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+AGG | - | chr1_2:43712107-43712126 | Msa0071640:intron | 40.0% |
| ! | AGCTGTTCCTGCTTATCTTT+TGG | - | chr1_2:43712130-43712149 | Msa0071640:intron | 40.0% |
| TCACGATCCAAAAGATAAGC+AGG | + | chr1_2:43712140-43712159 | None:intergenic | 40.0% | |
| AACTGTCTTCCAAAACAGCA+TGG | + | chr1_2:43712196-43712215 | None:intergenic | 40.0% | |
| TTGATTCTCTTGCACACTCT+AGG | - | chr1_2:43712223-43712242 | Msa0071640:intron | 40.0% | |
| AAAAAAGGAAGGAGAAGGCT+GGG | - | chr1_2:43712296-43712315 | Msa0071640:CDS | 40.0% | |
| TGAATGTGCAATCTCACCTT+AGG | + | chr1_2:43712340-43712359 | None:intergenic | 40.0% | |
| AAGCAGGGAAAGACATGAAA+CGG | - | chr1_2:43712418-43712437 | Msa0071640:intron | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr1_2:43712503-43712522 | None:intergenic | 40.0% | |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr1_2:43712535-43712554 | None:intergenic | 40.0% |
| TCCATAAACAAAAAGGGGAG+GGG | + | chr1_2:43712697-43712716 | None:intergenic | 40.0% | |
| CATCCATAAACAAAAAGGGG+AGG | + | chr1_2:43712699-43712718 | None:intergenic | 40.0% | |
| ! | GATGCTGAAATTTTTGTGGG+CGG | - | chr1_2:43712757-43712776 | Msa0071640:intron | 40.0% |
| AGCTAAGCAATGGAAGAGAA+TGG | - | chr1_2:43712968-43712987 | Msa0071640:CDS | 40.0% | |
| !! | CTCATACTTTGGTGGTTTTC+TGG | + | chr1_2:43713027-43713046 | None:intergenic | 40.0% |
| ATGAATCGCTCATACTTTGG+TGG | + | chr1_2:43713035-43713054 | None:intergenic | 40.0% | |
| CGAATGAATCGCTCATACTT+TGG | + | chr1_2:43713038-43713057 | None:intergenic | 40.0% | |
| TTAGTGAAACGCAATCCAGT+GGG | + | chr1_2:43713062-43713081 | None:intergenic | 40.0% | |
| TTTAGTGAAACGCAATCCAG+TGG | + | chr1_2:43713063-43713082 | None:intergenic | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr1_2:43713134-43713153 | Msa0071640:intron | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr1_2:43713184-43713203 | Msa0071640:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr1_2:43713189-43713208 | None:intergenic | 40.0% | |
| CAGTGATTGAAAAGGTCATG+TGG | + | chr1_2:43713284-43713303 | None:intergenic | 40.0% | |
| CTCTTGCTTACTGTGATTTC+AGG | - | chr1_2:43713666-43713685 | Msa0071640:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr1_2:43713846-43713865 | Msa0071640:intron | 40.0% | |
| ! | ACCATCATTTTCTGGGTTGT+TGG | + | chr1_2:43713850-43713869 | None:intergenic | 40.0% |
| TACTACAACATGACAGTGTC+CGG | + | chr1_2:43714055-43714074 | None:intergenic | 40.0% | |
| !! | AGTACCTTGGTGTTAAACGG+TGG | + | chr1_2:43710658-43710677 | None:intergenic | 45.0% |
| ! | CCAATAACAAGAGAGGTGTG+AGG | + | chr1_2:43710764-43710783 | None:intergenic | 45.0% |
| ! | CCTCACACCTCTCTTGTTAT+TGG | - | chr1_2:43710761-43710780 | Msa0071640:three_prime_UTR | 45.0% |
| TTGATAGACACCGACACATG+TGG | - | chr1_2:43711022-43711041 | Msa0071640:intron | 45.0% | |
| TTACTGACACGAACACATCC+CGG | + | chr1_2:43711082-43711101 | None:intergenic | 45.0% | |
| ! | TTCCAGTGGTATTGAAGGTG+TGG | - | chr1_2:43711285-43711304 | Msa0071640:intron | 45.0% |
| CAACACATGCTATAAAGCCG+AGG | - | chr1_2:43711313-43711332 | Msa0071640:intron | 45.0% | |
| CGGTCTATATGATCTCCTTG+AGG | + | chr1_2:43711553-43711572 | None:intergenic | 45.0% | |
| GCTCTTGTCTGTCAACAGTT+TGG | - | chr1_2:43712052-43712071 | Msa0071640:intron | 45.0% | |
| TGAAAACACGACCAGAGCAA+AGG | - | chr1_2:43712157-43712176 | Msa0071640:intron | 45.0% | |
| CAAAAAAGGAAGGAGAAGGC+TGG | - | chr1_2:43712295-43712314 | Msa0071640:CDS | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr1_2:43712321-43712340 | Msa0071640:intron | 45.0% | |
| TGCAATCTCACCTTAGGTAG+AGG | + | chr1_2:43712334-43712353 | None:intergenic | 45.0% | |
| AGCAGGGAAAGACATGAAAC+GGG | - | chr1_2:43712419-43712438 | Msa0071640:intron | 45.0% | |
| GGAGGGGACAAAGAATGATA+AGG | + | chr1_2:43712681-43712700 | None:intergenic | 45.0% | |
| !! | TCCCCTCCCCTTTTTGTTTA+TGG | - | chr1_2:43712693-43712712 | Msa0071640:CDS | 45.0% |
| ! | AAAGCAACATTTGTTGGGCC+TGG | - | chr1_2:43712996-43713015 | Msa0071640:CDS | 45.0% |
| !! | GGTGGTTTTCTGGTAAAACC+AGG | + | chr1_2:43713017-43713036 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+GGG | + | chr1_2:43713161-43713180 | None:intergenic | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr1_2:43713169-43713188 | Msa0071640:CDS | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr1_2:43713170-43713189 | Msa0071640:CDS | 45.0% |
| ACAATGTTCATACGCTCTCC+AGG | - | chr1_2:43713424-43713443 | Msa0071640:five_prime_UTR | 45.0% | |
| CAGGTGAATGTTAGCGAACT+TGG | - | chr1_2:43713685-43713704 | Msa0071640:intron | 45.0% | |
| GAATGTTAGCGAACTTGGTC+TGG | - | chr1_2:43713690-43713709 | Msa0071640:intron | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr1_2:43713821-43713840 | Msa0071640:intron | 45.0% | |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr1_2:43713841-43713860 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr1_2:43713842-43713861 | None:intergenic | 45.0% |
| !! | AAGGTCAGATCAAGCATTGG+AGG | - | chr1_2:43713895-43713914 | Msa0071640:intron | 45.0% |
| CGTTGGGGGGATTCAAGTAT+GGG | + | chr1_2:43710591-43710610 | None:intergenic | 50.0% | |
| TCGTTGGGGGGATTCAAGTA+TGG | + | chr1_2:43710592-43710611 | None:intergenic | 50.0% | |
| TCGAGAAGCTACTCTCGTTG+GGG | + | chr1_2:43710606-43710625 | None:intergenic | 50.0% | |
| GTCGAGAAGCTACTCTCGTT+GGG | + | chr1_2:43710607-43710626 | None:intergenic | 50.0% | |
| TGTCGAGAAGCTACTCTCGT+TGG | + | chr1_2:43710608-43710627 | None:intergenic | 50.0% | |
| ACTGCCACCGTTTAACACCA+AGG | - | chr1_2:43710651-43710670 | Msa0071640:three_prime_UTR | 50.0% | |
| GAACGGAACATCGTCTGAGA+CGG | - | chr1_2:43710858-43710877 | Msa0071640:three_prime_UTR | 50.0% | |
| ! | AACGGAACATCGTCTGAGAC+GGG | - | chr1_2:43710859-43710878 | Msa0071640:three_prime_UTR | 50.0% |
| CACCACACCTTCAATACCAC+TGG | + | chr1_2:43711290-43711309 | None:intergenic | 50.0% | |
| ! | ATAACGGGACTCTTTCGCCT+CGG | + | chr1_2:43711333-43711352 | None:intergenic | 50.0% |
| TGCGGGTTTCGTGATCGAAA+CGG | + | chr1_2:43711597-43711616 | None:intergenic | 50.0% | |
| !! | CCTTCTGGGCCTTTTTAGAG+TGG | + | chr1_2:43711651-43711670 | None:intergenic | 50.0% |
| ! | CCACTCTAAAAAGGCCCAGA+AGG | - | chr1_2:43711648-43711667 | Msa0071640:CDS | 50.0% |
| AGAGTCAACATCTAGGCGCA+AGG | - | chr1_2:43712085-43712104 | Msa0071640:intron | 50.0% | |
| CGACTGACATACCTTTGCTC+TGG | + | chr1_2:43712171-43712190 | None:intergenic | 50.0% | |
| !! | TCAGTCGTGCCATGCTGTTT+TGG | - | chr1_2:43712184-43712203 | Msa0071640:intron | 50.0% |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr1_2:43712303-43712322 | Msa0071640:CDS | 50.0% | |
| GCAGGGAAAGACATGAAACG+GGG | - | chr1_2:43712420-43712439 | Msa0071640:intron | 50.0% | |
| ATTTCCTCAGGTACGTCCTG+TGG | - | chr1_2:43712484-43712503 | Msa0071640:CDS | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr1_2:43712518-43712537 | Msa0071640:CDS | 50.0% | |
| AGGTGTACATGGGGCCATTA+GGG | + | chr1_2:43713151-43713170 | None:intergenic | 50.0% | |
| ! | CACCAAGAGAGGTGTACATG+GGG | + | chr1_2:43713160-43713179 | None:intergenic | 50.0% |
| ! | GACACCAAGAGAGGTGTACA+TGG | + | chr1_2:43713162-43713181 | None:intergenic | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr1_2:43713171-43713190 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr1_2:43713168-43713187 | Msa0071640:CDS | 50.0% |
| TTGGTCTGGTTACTCCTGCA+GGG | - | chr1_2:43713704-43713723 | Msa0071640:intron | 50.0% | |
| TCCTGCAGGGAAAGTTGTGT+GGG | - | chr1_2:43713717-43713736 | Msa0071640:intron | 50.0% | |
| CAAGTATGGGAGGCGGCTTA+GGG | + | chr1_2:43710578-43710597 | None:intergenic | 55.0% | |
| TCAAGTATGGGAGGCGGCTT+AGG | + | chr1_2:43710579-43710598 | None:intergenic | 55.0% | |
| GGGGATTCAAGTATGGGAGG+CGG | + | chr1_2:43710585-43710604 | None:intergenic | 55.0% | |
| TGGGGGGATTCAAGTATGGG+AGG | + | chr1_2:43710588-43710607 | None:intergenic | 55.0% | |
| GAGAAGCTACTCTCGTTGGG+GGG | + | chr1_2:43710604-43710623 | None:intergenic | 55.0% | |
| CGAGAAGCTACTCTCGTTGG+GGG | + | chr1_2:43710605-43710624 | None:intergenic | 55.0% | |
| GTTAAACGGTGGCAGTCTGG+CGG | + | chr1_2:43710647-43710666 | None:intergenic | 55.0% | |
| GGTGTTAAACGGTGGCAGTC+TGG | + | chr1_2:43710650-43710669 | None:intergenic | 55.0% | |
| GGGTTTCGTGATCGAAACGG+CGG | + | chr1_2:43711594-43711613 | None:intergenic | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr1_2:43712302-43712321 | Msa0071640:CDS | 55.0% | |
| GAGCGATTCATTCGTCCCAC+TGG | - | chr1_2:43713044-43713063 | Msa0071640:intron | 55.0% | |
| GAGGTGTACATGGGGCCATT+AGG | + | chr1_2:43713152-43713171 | None:intergenic | 55.0% | |
| CTTGGTCTGGTTACTCCTGC+AGG | - | chr1_2:43713703-43713722 | Msa0071640:intron | 55.0% | |
| CTCCTGCAGGGAAAGTTGTG+TGG | - | chr1_2:43713716-43713735 | Msa0071640:intron | 55.0% | |
| CCTGCAGGGAAAGTTGTGTG+GGG | - | chr1_2:43713718-43713737 | Msa0071640:intron | 55.0% | |
| AACCCGCAAGCGCAAGAGAG+AGG | - | chr1_2:43711609-43711628 | Msa0071640:intron | 60.0% | |
| AGCCTCTCTCTTGCGCTTGC+GGG | + | chr1_2:43711614-43711633 | None:intergenic | 60.0% | |
| GAGCCTCTCTCTTGCGCTTG+CGG | + | chr1_2:43711615-43711634 | None:intergenic | 60.0% | |
| TCAGCCACAGGACGTACCTG+AGG | + | chr1_2:43712491-43712510 | None:intergenic | 60.0% | |
| GGCCCCATGTACACCTCTCT+TGG | - | chr1_2:43713155-43713174 | Msa0071640:CDS | 60.0% | |
| CCCCACACAACTTTCCCTGC+AGG | + | chr1_2:43713721-43713740 | None:intergenic | 60.0% | |
| GCGCAAGAGAGAGGCTCGTG+AGG | - | chr1_2:43711618-43711637 | Msa0071640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43710538 | 43714282 | 43710538 | ID=Msa0071640;Name=Msa0071640 |
| chr1_2 | mRNA | 43710538 | 43714282 | 43710538 | ID=Msa0071640-mRNA-1;Parent=Msa0071640;Name=Msa0071640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=256|1|1|1|0.8|0.63|11|350|260 |
| chr1_2 | exon | 43710538 | 43710595 | 43710538 | ID=Msa0071640-mRNA-1:exon:13205;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43710632 | 43710991 | 43710632 | ID=Msa0071640-mRNA-1:exon:13204;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43711081 | 43711132 | 43711081 | ID=Msa0071640-mRNA-1:exon:13203;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43711615 | 43711850 | 43711615 | ID=Msa0071640-mRNA-1:exon:13202;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43712269 | 43712326 | 43712269 | ID=Msa0071640-mRNA-1:exon:13201;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43712478 | 43712546 | 43712478 | ID=Msa0071640-mRNA-1:exon:13200;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43712642 | 43712750 | 43712642 | ID=Msa0071640-mRNA-1:exon:13199;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43712966 | 43713033 | 43712966 | ID=Msa0071640-mRNA-1:exon:13198;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43713151 | 43713270 | 43713151 | ID=Msa0071640-mRNA-1:exon:13197;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43713406 | 43713529 | 43713406 | ID=Msa0071640-mRNA-1:exon:13196;Parent=Msa0071640-mRNA-1 |
| chr1_2 | exon | 43714148 | 43714282 | 43714148 | ID=Msa0071640-mRNA-1:exon:13195;Parent=Msa0071640-mRNA-1 |
| chr1_2 | five_prime_UTR | 43714148 | 43714282 | 43714148 | ID=Msa0071640-mRNA-1:five_prime_utr;Parent=Msa0071640-mRNA-1 |
| chr1_2 | five_prime_UTR | 43713409 | 43713529 | 43713409 | ID=Msa0071640-mRNA-1:five_prime_utr;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43713406 | 43713408 | 43713406 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43713151 | 43713270 | 43713151 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43712966 | 43713033 | 43712966 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43712642 | 43712750 | 43712642 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43712478 | 43712546 | 43712478 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43712269 | 43712326 | 43712269 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43711615 | 43711850 | 43711615 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43711081 | 43711132 | 43711081 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | CDS | 43710924 | 43710991 | 43710924 | ID=Msa0071640-mRNA-1:cds;Parent=Msa0071640-mRNA-1 |
| chr1_2 | three_prime_UTR | 43710632 | 43710923 | 43710632 | ID=Msa0071640-mRNA-1:three_prime_utr;Parent=Msa0071640-mRNA-1 |
| chr1_2 | three_prime_UTR | 43710538 | 43710595 | 43710538 | ID=Msa0071640-mRNA-1:three_prime_utr;Parent=Msa0071640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
