AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119910 MtrunA17_Chr3g0142871 93.636 660 35 5 93 752 1 653 0.0 1095
Msa0119910 MtrunA17_Chr7g0269901 91.970 660 46 5 93 752 1 653 0.0 1085
Msa0119910 MtrunA17_Chr3g0142891 83.396 265 35 2 490 752 1 258 1.72e-142 418
Msa0119910 MtrunA17_Chr8g0383991 29.245 212 99 3 540 751 140 300 5.99e-22 97.4
Msa0119910 MtrunA17_Chr2g0324921 85.417 48 5 1 1 48 78 123 9.47e-21 94.4
Msa0119910 MtrunA17_Chr4g0061421 30.085 236 115 8 195 394 9 230 2.63e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119910 AT3G11450.1 63.047 663 217 9 96 752 7 647 0.0 728
Msa0119910 AT5G06110.1 58.929 672 244 9 94 749 5 660 0.0 702
Msa0119910 AT5G06110.2 58.929 672 244 9 94 749 5 660 0.0 702
Msa0119910 AT5G45420.2 32.308 195 86 3 556 750 158 306 3.12e-19 89.7
Msa0119910 AT5G45420.1 32.308 195 86 3 556 750 158 306 3.12e-19 89.7
Msa0119910 AT5G45420.3 32.308 195 86 3 556 750 158 306 3.12e-19 89.7
Msa0119910 AT1G74250.1 29.167 240 117 6 195 394 12 238 8.03e-16 82.0

Find 193 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATGAAGGAAAGTTTC+AGG 0.179476 1_3:+44342489 Msa0119910:CDS
TTTCTCCTCTTCAGCAATTC+TGG 0.180978 1_3:-44341541 None:intergenic
GCAAGATCATTATGCATTAT+TGG 0.194820 1_3:+44340849 Msa0119910:CDS
TTCAATCTTCTTTGCTTCTT+TGG 0.201722 1_3:-44340995 None:intergenic
TCCTTTCGTCTCAGTATTCT+AGG 0.218999 1_3:-44341444 None:intergenic
CCATCTCCTTGAAGTTCCTT+TGG 0.238251 1_3:-44341994 None:intergenic
CTTTGGCTGTATCGGGCTTC+TGG 0.244533 1_3:-44342091 None:intergenic
TAAACTTCTCGGTGTTAATA+AGG 0.253459 1_3:+44340693 Msa0119910:CDS
CATCTCTGGTTAGCTTCCTT+TGG 0.256785 1_3:-44342407 None:intergenic
ACAAGGATGGGCGGTAATTA+TGG 0.265805 1_3:+44343127 Msa0119910:three_prime_UTR
GTCAAACTGTCTTCCGGTTA+AGG 0.298905 1_3:+44340624 Msa0119910:CDS
CACTGGATCACGGTCTTTCC+AGG 0.300060 1_3:-44342452 None:intergenic
GAGAGGTTTGTGTGAGAAAA+TGG 0.305422 1_3:+44341764 Msa0119910:CDS
CCAGCCACAATAACTGAAAA+TGG 0.315257 1_3:+44342206 Msa0119910:CDS
AGCTGAGAAGAAAAGGAAAA+AGG 0.327832 1_3:+44341476 Msa0119910:CDS
CAAGATCATTATGCATTATT+GGG 0.328641 1_3:+44340850 Msa0119910:CDS
CAACTTCTTTGCCATATACT+TGG 0.342195 1_3:-44341502 None:intergenic
GAGAAAAGTAATCAACAAAA+TGG 0.344685 1_3:+44341858 Msa0119910:CDS
CATCTCCTTGAAGTTCCTTT+GGG 0.350239 1_3:-44341993 None:intergenic
CTGAATCCCGAGATCATAAA+AGG 0.353541 1_3:+44341325 Msa0119910:CDS
CTTGTATGCTTCATGTTAGA+AGG 0.355916 1_3:-44343109 None:intergenic
ATCTCTGGTTAGCTTCCTTT+GGG 0.356444 1_3:-44342406 None:intergenic
TGGTATAGTAGTTGTTGTTT+TGG 0.357885 1_3:-44342234 None:intergenic
TTACAACTTAAACAGAATAT+CGG 0.358106 1_3:+44342585 Msa0119910:three_prime_UTR
AATGGCTCTTTCAAGGCTAA+TGG 0.363655 1_3:+44341876 Msa0119910:CDS
ACTGTCAACAAGAGAAGAAT+TGG 0.371141 1_3:+44342169 Msa0119910:CDS
TCATATTTCATCGCCTTAAC+CGG 0.377068 1_3:-44340637 None:intergenic
TACTCACAAGAGCTTCTAGA+TGG 0.381177 1_3:+44340583 Msa0119910:CDS
GCCGCTGCACTTAAACTTCT+CGG 0.384626 1_3:+44340682 Msa0119910:CDS
CCACCTGATTCTCATGCTTC+TGG 0.385294 1_3:+44337115 Msa0119910:CDS
TAGCAATGGTTTGGATCCTA+TGG 0.404517 1_3:+44337276 Msa0119910:CDS
TGTTTCGTCAAACTGTCTTC+CGG 0.405117 1_3:+44340618 Msa0119910:CDS
GGAATGGGAGGGATGGGAAG+AGG 0.407566 1_3:+44337253 Msa0119910:CDS
CGATGATAAGTCTTCAATAA+AGG 0.408030 1_3:+44341218 Msa0119910:CDS
CAGCTACTCGTTCCCATCTC+TGG 0.408539 1_3:-44342421 None:intergenic
TTGATGCTGCTTGTTGTTGT+TGG 0.409566 1_3:-44342299 None:intergenic
GTTAGAAGGGAAGGAGAAGC+AGG 0.410228 1_3:-44343095 None:intergenic
AGGCAAAAGCTGAGAAGAAA+AGG 0.413153 1_3:+44341469 Msa0119910:CDS
CGAGTAGCTGCAGCTGTACC+TGG 0.414686 1_3:+44342434 Msa0119910:CDS
TTGTTGATAATGCTTATAAG+AGG 0.415278 1_3:+44341418 Msa0119910:CDS
CGAAATCCCTTTGGTGGAAT+GGG 0.415367 1_3:+44337238 Msa0119910:CDS
CTTCTGTTGCAAAGCAGCTT+CGG 0.417552 1_3:-44341595 None:intergenic
CTACCAGAAGCATGAGAATC+AGG 0.421908 1_3:-44337118 None:intergenic
TAAAACCAACTGTCTATCAT+AGG 0.424982 1_3:+44342645 Msa0119910:three_prime_UTR
TCAAAAGCTTTGGCTGTATC+GGG 0.425452 1_3:-44342098 None:intergenic
GATTCTCATGCTTCTGGTAG+TGG 0.429593 1_3:+44337121 Msa0119910:CDS
GAGGTTTCATCCGGACAAAC+AGG 0.430275 1_3:+44340939 Msa0119910:CDS
AACTTCCTTGAGGTTTCATC+CGG 0.430850 1_3:+44340930 Msa0119910:CDS
TTTGGTATTCCTTTAAAAGC+TGG 0.431430 1_3:+44341262 Msa0119910:CDS
ATTCTTCTCTTGTTGACAGT+GGG 0.436243 1_3:-44342166 None:intergenic
ACAGCAGCTGCCTGTTTGTC+CGG 0.436914 1_3:-44340949 None:intergenic
GAGATTGAGCTATTGAGAAA+AGG 0.438019 1_3:+44341957 Msa0119910:CDS
ATCAAAAGCTTTGGCTGTAT+CGG 0.439665 1_3:-44342099 None:intergenic
CCTGAAACTTTCCTTCATCA+TGG 0.442260 1_3:-44342489 None:intergenic
TTTGGAGATCGAAATCCCTT+TGG 0.444197 1_3:+44337229 Msa0119910:CDS
TCATCGCCTAGAGACGGAAT+TGG 0.444617 1_3:-44341201 None:intergenic
CTGCTTGTTGTTGTTGGTAC+CGG 0.445233 1_3:-44342293 None:intergenic
TCAACAAAATGGCTCTTTCA+AGG 0.450515 1_3:+44341869 Msa0119910:CDS
AAGAAATGTATCAAAAGCTT+TGG 0.451091 1_3:-44342108 None:intergenic
GAAAGTGGTTCAAGATGATA+AGG 0.455254 1_3:+44340750 Msa0119910:CDS
CCAAAGGAACTTCAAGGAGA+TGG 0.456430 1_3:+44341994 Msa0119910:CDS
GGGCGGTAATTATGGAATCT+TGG 0.458511 1_3:+44343135 Msa0119910:three_prime_UTR
CAAGATCAAACTCATCCGCC+TGG 0.458657 1_3:-44341296 None:intergenic
TACCAATGTTCATCGGCAAT+GGG 0.458910 1_3:+44342917 Msa0119910:three_prime_UTR
CAAGTATATGGCAAAGAAGT+TGG 0.459085 1_3:+44341503 Msa0119910:CDS
GGGAAGAGGTAGCAATGGTT+TGG 0.460412 1_3:+44337267 Msa0119910:CDS
CCAACACTGCATAAGCCTCT+TGG 0.462398 1_3:-44341041 None:intergenic
TCGAAATCCCTTTGGTGGAA+TGG 0.463114 1_3:+44337237 Msa0119910:CDS
GATGCAATTGATTGTGCTGC+AGG 0.463598 1_3:-44342143 None:intergenic
AGAGGCGTGGTCTGCAGTGC+AGG 0.469414 1_3:+44342352 Msa0119910:CDS
TGCTTTCATTATTTCTTCAA+CGG 0.470133 1_3:-44342051 None:intergenic
CTGGTTAGCTTCCTTTGGGA+AGG 0.471179 1_3:-44342402 None:intergenic
GTCGTCGTCATCGTCGGTGT+TGG 0.475726 1_3:-44342254 None:intergenic
CAAAGGAAGCTAACCAGAGA+TGG 0.482494 1_3:+44342408 Msa0119910:CDS
GGAGATCGAAATCCCTTTGG+TGG 0.484494 1_3:+44337232 Msa0119910:CDS
GTTGTTGTCGTCGTCATCGT+CGG 0.485972 1_3:-44342260 None:intergenic
TTTGCAACAGAAGAAGTTGA+AGG 0.486726 1_3:+44341605 Msa0119910:CDS
TTACCAATGTTCATCGGCAA+TGG 0.487101 1_3:+44342916 Msa0119910:three_prime_UTR
TATGGCAAAGAAGTTGGAGG+AGG 0.488551 1_3:+44341509 Msa0119910:CDS
TGGCCAGCCAGCCTCCATAA+TGG 0.494322 1_3:+44340531 Msa0119910:CDS
TTCCGATGATTGAACTGAAA+CGG 0.494481 1_3:-44337181 None:intergenic
TTGATACATTTCTTGAGAAG+AGG 0.495249 1_3:+44342117 Msa0119910:CDS
TTTGGCAGCTTCAGTTTGCT+CGG 0.495369 1_3:-44340977 None:intergenic
CCTTTCGTCTCAGTATTCTA+GGG 0.496238 1_3:-44341443 None:intergenic
TTCCGTTTCAGTTCAATCAT+CGG 0.498126 1_3:+44337179 Msa0119910:CDS
CTTTGGTGGAATGGGAGGGA+TGG 0.502219 1_3:+44337246 Msa0119910:CDS
TTTGGTGGAATGGGAGGGAT+GGG 0.503447 1_3:+44337247 Msa0119910:CDS
AGCAATGGCTGCAAATGAAA+AGG 0.504292 1_3:+44343032 Msa0119910:three_prime_UTR
CTTCTAACATGAAGCATACA+AGG 0.504992 1_3:+44343110 Msa0119910:three_prime_UTR
CAGCCATTATGGAGGCTGGC+TGG 0.507682 1_3:-44340534 None:intergenic
GTTGTTGTTGGTACCGGTGT+TGG 0.507732 1_3:-44342287 None:intergenic
CATTTATTACCAATGTTCAT+CGG 0.508568 1_3:+44342910 Msa0119910:three_prime_UTR
TCAATCTCTTCTTTAGTCCA+AGG 0.508908 1_3:-44341942 None:intergenic
TAGAGAAGAAGGAGAAACCT+TGG 0.511744 1_3:+44341925 Msa0119910:CDS
GCATGGAAAGAGTGACCAGC+GGG 0.514626 1_3:-44340661 None:intergenic
ATCCCTCCCATTCCACCAAA+GGG 0.515203 1_3:-44337244 None:intergenic
AGCAGGCTACATAGAGAAGA+AGG 0.516964 1_3:+44341914 Msa0119910:CDS
TGAACAGCCATTATGGAGGC+TGG 0.517405 1_3:-44340538 None:intergenic
CGCCCATTCCTCATAAAAGC+AGG 0.519392 1_3:-44341162 None:intergenic
CCAAGAGGCTTATGCAGTGT+TGG 0.523151 1_3:+44341041 Msa0119910:CDS
TGATGATAATAATAAGAAAG+TGG 0.527231 1_3:+44340735 Msa0119910:CDS
ATGCTTCATGTTAGAAGGGA+AGG 0.527852 1_3:-44343104 None:intergenic
TCTCATGCTTCTGGTAGTGG+TGG 0.527925 1_3:+44337124 Msa0119910:CDS
CTCATGCTTCTGGTAGTGGT+GGG 0.529120 1_3:+44337125 Msa0119910:CDS
CAAAGGAACTTCAAGGAGAT+GGG 0.529793 1_3:+44341995 Msa0119910:CDS
AATTCTTCTCTTGTTGACAG+TGG 0.529994 1_3:-44342167 None:intergenic
GTTTCAGAATACATTGGCAC+TGG 0.531471 1_3:+44342023 Msa0119910:CDS
AAGATCAAACTCATCCGCCT+GGG 0.537985 1_3:-44341295 None:intergenic
AACCCATTGCCGATGAACAT+TGG 0.541497 1_3:-44342919 None:intergenic
AATCAACCAATTCCGTCTCT+AGG 0.542225 1_3:+44341195 Msa0119910:CDS
ATGCCTAGCTATGATTGAGC+AGG 0.543798 1_3:-44342610 None:intergenic
GCATGAGAATCAGGTGGTGG+TGG 0.544543 1_3:-44337109 None:intergenic
TTCTCTATGTAGCCTGCTAG+AGG 0.545163 1_3:-44341909 None:intergenic
AGCGGCCAGAATTGCTGAAG+AGG 0.545593 1_3:+44341536 Msa0119910:CDS
AGTTTCCCAAAGGAACTTCA+AGG 0.546208 1_3:+44341988 Msa0119910:CDS
CCGAGATCATAAAAGGTGGA+TGG 0.548047 1_3:+44341332 Msa0119910:CDS
AATACTGAGACGAAAGGAAG+AGG 0.549424 1_3:+44341449 Msa0119910:CDS
CATCCCTCCCATTCCACCAA+AGG 0.550801 1_3:-44337245 None:intergenic
GGAAACAGTAGTCCTCTAGC+AGG 0.554821 1_3:+44341897 Msa0119910:CDS
AAGTTGTAAAATCTAAAAGC+AGG 0.555631 1_3:-44342571 None:intergenic
AATGTTCATCGGCAATGGGT+TGG 0.556368 1_3:+44342921 Msa0119910:three_prime_UTR
TTGTATGCTTCATGTTAGAA+GGG 0.560408 1_3:-44343108 None:intergenic
TATGAGGAATGGGCGGTGGT+CGG 0.561239 1_3:+44341170 Msa0119910:CDS
TAACATGAAGCATACAAGGA+TGG 0.561267 1_3:+44343114 Msa0119910:three_prime_UTR
ATCATAAAAGGTGGATGGAA+AGG 0.565265 1_3:+44341337 Msa0119910:CDS
AACACCTTGTAGAAGTCTTG+TGG 0.565942 1_3:-44341135 None:intergenic
TTCTTCTCTTGTTGACAGTG+GGG 0.568296 1_3:-44342165 None:intergenic
AACATGAAGCATACAAGGAT+GGG 0.569226 1_3:+44343115 Msa0119910:three_prime_UTR
GAAGTTTAAGTGCAGCGGCA+TGG 0.569496 1_3:-44340678 None:intergenic
TGGCTGTATCGGGCTTCTGG+AGG 0.570452 1_3:-44342088 None:intergenic
CAACAAGAGAAGAATTGGAA+GGG 0.571941 1_3:+44342174 Msa0119910:CDS
GCTCCTGCTCAATCATAGCT+AGG 0.573370 1_3:+44342607 Msa0119910:three_prime_UTR
TCATTCTTATCCCATATCTG+TGG 0.573398 1_3:+44342537 Msa0119910:three_prime_UTR
AATCCCTTTGGTGGAATGGG+AGG 0.575318 1_3:+44337241 Msa0119910:CDS
GACTTATCATCGCCTAGAGA+CGG 0.577588 1_3:-44341207 None:intergenic
ATCGGGCTTCTGGAGGAGAA+CGG 0.578804 1_3:-44342081 None:intergenic
ACTTCCTCTTGCATTCCCAT+AGG 0.579283 1_3:-44337292 None:intergenic
TTTGATATTGAACAATTGAG+AGG 0.579475 1_3:+44341747 Msa0119910:CDS
TGTTGATAATGCTTATAAGA+GGG 0.580470 1_3:+44341419 Msa0119910:CDS
ACAGAAGAAGTTGAAGGAGA+AGG 0.582746 1_3:+44341611 Msa0119910:CDS
GAGGTTGTTTCAGAATACAT+TGG 0.584103 1_3:+44342017 Msa0119910:CDS
GGAGAAACAACGAAAAGCAG+AGG 0.585652 1_3:+44341557 Msa0119910:CDS
ACTCACAAGAGCTTCTAGAT+GGG 0.587973 1_3:+44340584 Msa0119910:CDS
GAAGTTGGAGGAGGAAGAAG+CGG 0.588565 1_3:+44341518 Msa0119910:CDS
AACAACAAGCAGCATCAACT+CGG 0.590459 1_3:+44342304 Msa0119910:CDS
CCAACTGTCTATCATAGGAC+CGG 0.591142 1_3:+44342650 Msa0119910:three_prime_UTR
AAAGGAAGCTAACCAGAGAT+GGG 0.594916 1_3:+44342409 Msa0119910:CDS
ATCCCTTTGGTGGAATGGGA+GGG 0.596841 1_3:+44337242 Msa0119910:CDS
AACAAGAGAAGAATTGGAAG+GGG 0.601968 1_3:+44342175 Msa0119910:CDS
CCGGTCCTATGATAGACAGT+TGG 0.602432 1_3:-44342650 None:intergenic
ACCGAGAAGTTTAAGTGCAG+CGG 0.606590 1_3:-44340683 None:intergenic
TCATCTTAGATATCTTGCTA+CGG 0.606800 1_3:+44340879 Msa0119910:CDS
GTATATGGCAAAGAAGTTGG+AGG 0.607456 1_3:+44341506 Msa0119910:CDS
AGTCATCCGACGAAAAGTAA+TGG 0.608800 1_3:-44337156 None:intergenic
TCAACAAGAGAAGAATTGGA+AGG 0.609160 1_3:+44342173 Msa0119910:CDS
TCAAGGAGTTTCAGAACAAG+AGG 0.609387 1_3:+44342334 Msa0119910:CDS
TGATATTGCTGAAGATGATG+TGG 0.609492 1_3:+44341707 Msa0119910:CDS
GAAGCATGAGAATCAGGTGG+TGG 0.609693 1_3:-44337112 None:intergenic
GCTATCATAAAACTTCCTTG+AGG 0.611239 1_3:+44340920 Msa0119910:CDS
CCCTAGAATACTGAGACGAA+AGG 0.614708 1_3:+44341443 Msa0119910:CDS
AGCAATGGTTTGGATCCTAT+GGG 0.614858 1_3:+44337277 Msa0119910:CDS
GGGATGGGAAGAGGTAGCAA+TGG 0.618448 1_3:+44337262 Msa0119910:CDS
GCAAGAGGAAGTGTGCATCA+AGG 0.618647 1_3:+44337303 Msa0119910:CDS
GGATCCTATGGGAATGCAAG+AGG 0.619533 1_3:+44337288 Msa0119910:CDS
CTTGTGAGTAAGTAATAAGA+CGG 0.621140 1_3:-44340570 None:intergenic
GTCTTGTGGATCACAGTCAG+TGG 0.627262 1_3:-44341121 None:intergenic
GGAATACAAAAGTTTCCCAA+AGG 0.628434 1_3:+44341978 Msa0119910:CDS
TCTTGTGGATCACAGTCAGT+GGG 0.629359 1_3:-44341120 None:intergenic
ATCAACTCGGAAGACTCTCA+AGG 0.633952 1_3:+44342317 Msa0119910:CDS
AGGAGAAGCAGGGATCATCA+TGG 0.634957 1_3:-44343084 None:intergenic
GCTTTGAAAAGAATGCTCAT+CGG 0.639009 1_3:-44343012 None:intergenic
AAGCTGGAGAGAGTTTCCCC+AGG 0.639559 1_3:+44341278 Msa0119910:CDS
GACAACAACAATTCCAACAC+CGG 0.641520 1_3:+44342274 Msa0119910:CDS
TTTGTCCGGATGAAACCTCA+AGG 0.646808 1_3:-44340935 None:intergenic
TAATTATGGAATCTTGGACC+AGG 0.647104 1_3:+44343141 Msa0119910:three_prime_UTR
AGATCAAACTCATCCGCCTG+GGG 0.647413 1_3:-44341294 None:intergenic
TGTTTGAACAGCCATTATGG+AGG 0.649988 1_3:-44340542 None:intergenic
AGTATGTGTTGTGACAAGAC+AGG 0.650186 1_3:-44341684 None:intergenic
TTAGAAGGGAAGGAGAAGCA+GGG 0.657178 1_3:-44343094 None:intergenic
TTGTAAAATCTAAAAGCAGG+AGG 0.658714 1_3:-44342568 None:intergenic
GGCATGGAAAGAGTGACCAG+CGG 0.659809 1_3:-44340662 None:intergenic
TGAGAAAATGGAAGACAAAG+AGG 0.666098 1_3:+44341776 Msa0119910:CDS
TGATCCACAAGACTTCTACA+AGG 0.666734 1_3:+44341131 Msa0119910:CDS
TTGCTGCTGTAAGAATCAGA+TGG 0.670992 1_3:-44340787 None:intergenic
AATCCCGAGATCATAAAAGG+TGG 0.674327 1_3:+44341328 Msa0119910:CDS
GAGTTTCAGAACAAGAGGCG+TGG 0.676797 1_3:+44342339 Msa0119910:CDS
AAGCATTATCAACAAGAGTG+CGG 0.686922 1_3:-44341410 None:intergenic
AGGAACTTCAAGGAGATGGG+AGG 0.689319 1_3:+44341998 Msa0119910:CDS
ATGAAGCATACAAGGATGGG+CGG 0.690447 1_3:+44343118 Msa0119910:three_prime_UTR
CTGGAGAGAGTTTCCCCAGG+CGG 0.701021 1_3:+44341281 Msa0119910:CDS
GCGATGAAATATGACCCCGC+TGG 0.701983 1_3:+44340646 Msa0119910:CDS
CCAGAAGCATGAGAATCAGG+TGG 0.707871 1_3:-44337115 None:intergenic
CATGGAAAGAGTGACCAGCG+GGG 0.770423 1_3:-44340660 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_3:44337380-44337399 Msa0119910:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1_3:44337379-44337398 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr1_3:44337380-44337399 None:intergenic 0.0%
!! ATATATATATATATATATAA+AGG + chr1_3:44338252-44338271 Msa0119910:intron 0.0%
!! TATATATATATATATATAAA+GGG + chr1_3:44338253-44338272 Msa0119910:intron 0.0%
!!! TGATTTTTTTAAGAAAAAAA+TGG + chr1_3:44337972-44337991 Msa0119910:intron 10.0%
!! TAAAAAATTAAAAAAGGAAA+TGG - chr1_3:44338451-44338470 None:intergenic 10.0%
!! ATACTAAAAAATATATAACT+TGG + chr1_3:44339559-44339578 Msa0119910:intron 10.0%
!!! AATATGTGATTTTTTATATA+TGG - chr1_3:44339915-44339934 None:intergenic 10.0%
!! AAAAAAAAAAAAACATGTTT+GGG + chr1_3:44340152-44340171 Msa0119910:intron 10.0%
!! TTAAAAATCTAGAAATTATG+AGG - chr1_3:44337594-44337613 None:intergenic 15.0%
!!! TTTTTTAAGAAAAAAATGGA+AGG + chr1_3:44337976-44337995 Msa0119910:intron 15.0%
!! CTTTATATATAATAGCTAAA+CGG + chr1_3:44338613-44338632 Msa0119910:intron 15.0%
!! TTTATATATAATAGCTAAAC+GGG + chr1_3:44338614-44338633 Msa0119910:intron 15.0%
!! AGTAACTAAAGTAAAAAAAA+TGG - chr1_3:44338782-44338801 None:intergenic 15.0%
!! GAAAAAAAAAAAAACATGTT+TGG + chr1_3:44340151-44340170 Msa0119910:intron 15.0%
!!! GAAACAAGTAATTAATTTTA+GGG - chr1_3:44340257-44340276 None:intergenic 15.0%
!!! TGAAACAAGTAATTAATTTT+AGG - chr1_3:44340258-44340277 None:intergenic 15.0%
!!! TTTATTGTATTTTGATTTTC+TGG + chr1_3:44340439-44340458 Msa0119910:intron 15.0%
!!! ATCATAAATTCTTCTTTTTA+CGG - chr1_3:44341073-44341092 None:intergenic 15.0%
!!! GATATTTTTGCTGAATATTT+TGG + chr1_3:44337211-44337230 Msa0119910:CDS 20.0%
!!! AAGAGATTTTCATAAGAAAA+TGG + chr1_3:44337619-44337638 Msa0119910:intron 20.0%
!!! AGAGATTTTCATAAGAAAAT+GGG + chr1_3:44337620-44337639 Msa0119910:intron 20.0%
!! AATCCCAATTTCTTAATTTA+GGG + chr1_3:44337753-44337772 Msa0119910:intron 20.0%
!! AAACCCTAAATTAAGAAATT+GGG - chr1_3:44337759-44337778 None:intergenic 20.0%
!!! TTTTTCTTAAAAAAATCAGC+AGG - chr1_3:44337970-44337989 None:intergenic 20.0%
!! ACTGTAATCAAAAATTTCTT+TGG - chr1_3:44338301-44338320 None:intergenic 20.0%
!!! AAAGAAATTTTTGATTACAG+TGG + chr1_3:44338300-44338319 Msa0119910:intron 20.0%
!! TGAATCTGGAAAAAAAATAT+TGG + chr1_3:44338395-44338414 Msa0119910:intron 20.0%
!! GAATCTGGAAAAAAAATATT+GGG + chr1_3:44338396-44338415 Msa0119910:intron 20.0%
!! TTTAATCAAAGAATTTCAAG+TGG + chr1_3:44338467-44338486 Msa0119910:intron 20.0%
!! TTGGGTAAAAAAAAAAACTA+AGG - chr1_3:44338941-44338960 None:intergenic 20.0%
!! TTGCAAGTATTTATCAATTT+GGG - chr1_3:44338959-44338978 None:intergenic 20.0%
!!! CTTTATATGTATTTTTACAC+AGG - chr1_3:44339121-44339140 None:intergenic 20.0%
!! CTGTGTAAAAATACATATAA+AGG + chr1_3:44339119-44339138 Msa0119910:intron 20.0%
!! CGAAAAATAAAAATAAATCG+AGG - chr1_3:44339176-44339195 None:intergenic 20.0%
!! AGATTAATGACATCTTATAA+TGG + chr1_3:44339403-44339422 Msa0119910:intron 20.0%
!! AATCTGAATCAAGATAAATT+TGG + chr1_3:44339987-44340006 Msa0119910:intron 20.0%
!!! TCGATTTATTATTGTTGATT+TGG - chr1_3:44340069-44340088 None:intergenic 20.0%
!! AATCAACAATAATAAATCGA+AGG + chr1_3:44340069-44340088 Msa0119910:intron 20.0%
!!! TTCATGGTTTTTAGATTTAA+TGG + chr1_3:44340416-44340435 Msa0119910:intron 20.0%
!!! CAATTATCTGAATTTTTGTT+TGG + chr1_3:44340464-44340483 Msa0119910:intron 20.0%
!!! AAGAGTTTTTTGTATTTTGT+TGG + chr1_3:44340511-44340530 Msa0119910:CDS 20.0%
!! TGATGATAATAATAAGAAAG+TGG + chr1_3:44340735-44340754 Msa0119910:CDS 20.0%
!!! TCATAAATTCTTCTTTTTAC+GGG - chr1_3:44341072-44341091 None:intergenic 20.0%
!!! TTGATAGTTTCTACAATTTT+TGG + chr1_3:44341244-44341263 Msa0119910:CDS 20.0%
!! TTACAACTTAAACAGAATAT+CGG + chr1_3:44342585-44342604 Msa0119910:three_prime_UTR 20.0%
!!! TATAAACCATTACTTTTCGT+CGG + chr1_3:44337150-44337169 Msa0119910:CDS 25.0%
! TATTCAGCAAAAATATCATC+AGG - chr1_3:44337208-44337227 None:intergenic 25.0%
! GACCATTCAATTAAAATCAA+TGG + chr1_3:44337464-44337483 Msa0119910:intron 25.0%
!!! AGCCATTGATTTTAATTGAA+TGG - chr1_3:44337469-44337488 None:intergenic 25.0%
! GAATCCCAATTTCTTAATTT+AGG + chr1_3:44337752-44337771 Msa0119910:intron 25.0%
! CAAACCCTAAATTAAGAAAT+TGG - chr1_3:44337760-44337779 None:intergenic 25.0%
!!! TTTTTTTCTTCTGTTTTTCC+AGG + chr1_3:44337872-44337891 Msa0119910:intron 25.0%
! TAAGAAAAAAATGGAAGGAA+TGG + chr1_3:44337981-44338000 Msa0119910:intron 25.0%
!!! AAGCGTTGATTTTAATCTAA+CGG + chr1_3:44338120-44338139 Msa0119910:intron 25.0%
! AAGATTGAGAGAATTAGATT+GGG + chr1_3:44338366-44338385 Msa0119910:intron 25.0%
! AAAAAGGAAATGGAAAAGAA+AGG - chr1_3:44338441-44338460 None:intergenic 25.0%
! TTAATTAAAAATTGCCTACG+TGG + chr1_3:44338504-44338523 Msa0119910:intron 25.0%
! TTACTTTAGTTACTTGTAAC+CGG + chr1_3:44338788-44338807 Msa0119910:intron 25.0%
!!! AATGATAGTCTTCTAAAATC+CGG - chr1_3:44338810-44338829 None:intergenic 25.0%
! CTTGCAAGTATTTATCAATT+TGG - chr1_3:44338960-44338979 None:intergenic 25.0%
! AAAAACAATTTAGATCTGGA+AGG - chr1_3:44338996-44339015 None:intergenic 25.0%
! TGAGAAAAACAATTTAGATC+TGG - chr1_3:44339000-44339019 None:intergenic 25.0%
!! CACATTTTTCATGTGTTTTT+AGG + chr1_3:44339346-44339365 Msa0119910:intron 25.0%
! ATAACAAATGTAGAAGTTTG+CGG - chr1_3:44339855-44339874 None:intergenic 25.0%
! AATAATAAATCGAAGGAATG+CGG + chr1_3:44340076-44340095 Msa0119910:intron 25.0%
! GATATTTCGTTGAGAAAATT+GGG - chr1_3:44340187-44340206 None:intergenic 25.0%
! CAAGATCATTATGCATTATT+GGG + chr1_3:44340850-44340869 Msa0119910:CDS 25.0%
!! TGAAATTGACGTTCATTTTA+AGG + chr1_3:44341014-44341033 Msa0119910:CDS 25.0%
!!! TTGTTGATAATGCTTATAAG+AGG + chr1_3:44341418-44341437 Msa0119910:CDS 25.0%
!!! TGTTGATAATGCTTATAAGA+GGG + chr1_3:44341419-44341438 Msa0119910:CDS 25.0%
! TTTGATATTGAACAATTGAG+AGG + chr1_3:44341747-44341766 Msa0119910:CDS 25.0%
! GAGAAAAGTAATCAACAAAA+TGG + chr1_3:44341858-44341877 Msa0119910:CDS 25.0%
!! TGCTTTCATTATTTCTTCAA+CGG - chr1_3:44342054-44342073 None:intergenic 25.0%
! AAGAAATGTATCAAAAGCTT+TGG - chr1_3:44342111-44342130 None:intergenic 25.0%
! AAGTTGTAAAATCTAAAAGC+AGG - chr1_3:44342574-44342593 None:intergenic 25.0%
! TTCTCTTTCAAACCAAAAAT+GGG - chr1_3:44342684-44342703 None:intergenic 25.0%
! CATTTATTACCAATGTTCAT+CGG + chr1_3:44342910-44342929 Msa0119910:three_prime_UTR 25.0%
TATATGGCATATCAAATGAG+AGG + chr1_3:44337406-44337425 Msa0119910:intron 30.0%
AAATTATGAGGAAGATGCAA+GGG - chr1_3:44337582-44337601 None:intergenic 30.0%
! AGTTGATATCCAAATAACCA+TGG + chr1_3:44337730-44337749 Msa0119910:intron 30.0%
ATTAAGAAATTGGGATTCCA+TGG - chr1_3:44337750-44337769 None:intergenic 30.0%
! GAGGACATTTTATAATGAGA+GGG - chr1_3:44338165-44338184 None:intergenic 30.0%
! AGAGGACATTTTATAATGAG+AGG - chr1_3:44338166-44338185 None:intergenic 30.0%
CAATCTAATTCTCTCAATCT+TGG - chr1_3:44338367-44338386 None:intergenic 30.0%
CAAGATTGAGAGAATTAGAT+TGG + chr1_3:44338365-44338384 Msa0119910:intron 30.0%
TAAGCAAAGCATATCGAATT+GGG - chr1_3:44338668-44338687 None:intergenic 30.0%
TTAAGCAAAGCATATCGAAT+TGG - chr1_3:44338669-44338688 None:intergenic 30.0%
AGTAAAAAAAATGGACAGCA+TGG - chr1_3:44338773-44338792 None:intergenic 30.0%
ACGTTATGTAGAGACAATAA+TGG - chr1_3:44338904-44338923 None:intergenic 30.0%
! AAATACATTTTTCCCCTCAA+CGG + chr1_3:44339051-44339070 Msa0119910:intron 30.0%
!! TGTATTTTTACACAGGTGTA+TGG - chr1_3:44339114-44339133 None:intergenic 30.0%
AATTATGAATTTGCGCGTTT+CGG - chr1_3:44339200-44339219 None:intergenic 30.0%
! AAAGTACCATTCAGGATAAA+GGG - chr1_3:44339442-44339461 None:intergenic 30.0%
!! AAAAGTACCATTCAGGATAA+AGG - chr1_3:44339443-44339462 None:intergenic 30.0%
TATCATCAAAATATGCCCAT+GGG - chr1_3:44339611-44339630 None:intergenic 30.0%
CAGTTATGTCATTACTAATG+TGG + chr1_3:44339888-44339907 Msa0119910:intron 30.0%
GGATATTTCGTTGAGAAAAT+TGG - chr1_3:44340188-44340207 None:intergenic 30.0%
!! CTGAATTTTTGTTTGGATAC+AGG + chr1_3:44340471-44340490 Msa0119910:intron 30.0%
!! ATTTTTGTTTGGATACAGGT+TGG + chr1_3:44340475-44340494 Msa0119910:intron 30.0%
!! TTTTGTTTGAACAGCCATTA+TGG - chr1_3:44340548-44340567 None:intergenic 30.0%
CTTGTGAGTAAGTAATAAGA+CGG - chr1_3:44340573-44340592 None:intergenic 30.0%
CAGTTTGACGAAACAAAAAT+AGG - chr1_3:44340613-44340632 None:intergenic 30.0%
!! TAAACTTCTCGGTGTTAATA+AGG + chr1_3:44340693-44340712 Msa0119910:CDS 30.0%
AGCAAGAGTAAGAAAAAATC+TGG + chr1_3:44340805-44340824 Msa0119910:CDS 30.0%
AAGAGTAAGAAAAAATCTGG+TGG + chr1_3:44340808-44340827 Msa0119910:CDS 30.0%
GCAAGATCATTATGCATTAT+TGG + chr1_3:44340849-44340868 Msa0119910:CDS 30.0%
TCATCTTAGATATCTTGCTA+CGG + chr1_3:44340879-44340898 Msa0119910:CDS 30.0%
TTCAATCTTCTTTGCTTCTT+TGG - chr1_3:44340998-44341017 None:intergenic 30.0%
CGATGATAAGTCTTCAATAA+AGG + chr1_3:44341218-44341237 Msa0119910:CDS 30.0%
! TTTGGTATTCCTTTAAAAGC+TGG + chr1_3:44341262-44341281 Msa0119910:CDS 30.0%
TTGATACATTTCTTGAGAAG+AGG + chr1_3:44342117-44342136 Msa0119910:CDS 30.0%
! TTCACCATTTTCAGTTATTG+TGG - chr1_3:44342213-44342232 None:intergenic 30.0%
!!! TGGTATAGTAGTTGTTGTTT+TGG - chr1_3:44342237-44342256 None:intergenic 30.0%
GGAAAAAATTCCACAGATAT+GGG - chr1_3:44342550-44342569 None:intergenic 30.0%
AGGAAAAAATTCCACAGATA+TGG - chr1_3:44342551-44342570 None:intergenic 30.0%
TTGTAAAATCTAAAAGCAGG+AGG - chr1_3:44342571-44342590 None:intergenic 30.0%
TAAAACCAACTGTCTATCAT+AGG + chr1_3:44342645-44342664 Msa0119910:three_prime_UTR 30.0%
GTTCTCTTTCAAACCAAAAA+TGG - chr1_3:44342685-44342704 None:intergenic 30.0%
!! TTTTTGTTATCTCAGCTATC+TGG + chr1_3:44342719-44342738 Msa0119910:three_prime_UTR 30.0%
TTGTATGCTTCATGTTAGAA+GGG - chr1_3:44343111-44343130 None:intergenic 30.0%
TTCCGTTTCAGTTCAATCAT+CGG + chr1_3:44337179-44337198 Msa0119910:CDS 35.0%
TTCCGATGATTGAACTGAAA+CGG - chr1_3:44337184-44337203 None:intergenic 35.0%
!! ATATTGAAGAAAGGTGTTGC+AGG - chr1_3:44337519-44337538 None:intergenic 35.0%
GAAATTATGAGGAAGATGCA+AGG - chr1_3:44337583-44337602 None:intergenic 35.0%
ACTCGTTGACAAAATCTCTA+TGG - chr1_3:44337713-44337732 None:intergenic 35.0%
ATTGGGATTCCATGGTTATT+TGG - chr1_3:44337742-44337761 None:intergenic 35.0%
! TTAGGGTTTGAGACAACATA+TGG + chr1_3:44337770-44337789 Msa0119910:intron 35.0%
! TAGGGTTTGAGACAACATAT+GGG + chr1_3:44337771-44337790 Msa0119910:intron 35.0%
! TTTTCCAGGAAAAAAATCGC+AGG + chr1_3:44337886-44337905 Msa0119910:intron 35.0%
ACATTTGAAGATCCAATTGC+TGG - chr1_3:44337921-44337940 None:intergenic 35.0%
ACACAAAACAGTACATGAGA+TGG + chr1_3:44338005-44338024 Msa0119910:intron 35.0%
GATGGAGGAATAGAAATTAC+TGG + chr1_3:44338023-44338042 Msa0119910:intron 35.0%
AAAGAAGTGGAGAAGATGAA+AGG + chr1_3:44338052-44338071 Msa0119910:intron 35.0%
! TTTTATAATGAGAGGGTGAG+AGG - chr1_3:44338158-44338177 None:intergenic 35.0%
TATCCTGAGAAGAGAAATGT+TGG + chr1_3:44338700-44338719 Msa0119910:intron 35.0%
ATCCTGAGAAGAGAAATGTT+GGG + chr1_3:44338701-44338720 Msa0119910:intron 35.0%
CATGGCAAGTTATTATTGGA+GGG - chr1_3:44338755-44338774 None:intergenic 35.0%
ACAGCATGGCAAGTTATTAT+TGG - chr1_3:44338759-44338778 None:intergenic 35.0%
GTAGAGACAATAATGGTGAA+TGG - chr1_3:44338897-44338916 None:intergenic 35.0%
ATTGTCTCTACATAACGTTC+TGG + chr1_3:44338906-44338925 Msa0119910:intron 35.0%
ATTAACTGCAATTGAACCAG+TGG + chr1_3:44339241-44339260 Msa0119910:intron 35.0%
AATGGTAGTCAATTACCGTT+GGG + chr1_3:44339314-44339333 Msa0119910:intron 35.0%
!!! AATGTGTTTTTTTCCCCCAA+CGG - chr1_3:44339332-44339351 None:intergenic 35.0%
AAGTACCATTCAGGATAAAG+GGG - chr1_3:44339441-44339460 None:intergenic 35.0%
GTGTGTAAACAATGAGAAGA+AGG - chr1_3:44339471-44339490 None:intergenic 35.0%
TTATTCGTCAAACATACCCA+TGG + chr1_3:44339592-44339611 Msa0119910:intron 35.0%
TATTCGTCAAACATACCCAT+GGG + chr1_3:44339593-44339612 Msa0119910:intron 35.0%
GTATCATCAAAATATGCCCA+TGG - chr1_3:44339612-44339631 None:intergenic 35.0%
!!! TGGGCATATTTTGATGATAC+TGG + chr1_3:44339612-44339631 Msa0119910:intron 35.0%
AAAACATGTTTGGGCCAAAA+TGG + chr1_3:44340161-44340180 Msa0119910:intron 35.0%
! TTGAGAAAATTGGGCCATTT+TGG - chr1_3:44340178-44340197 None:intergenic 35.0%
AACATACCTCCTTAAAGAGA+TGG - chr1_3:44340336-44340355 None:intergenic 35.0%
! GAGCTTCTTATTTCACTTCA+TGG + chr1_3:44340400-44340419 Msa0119910:intron 35.0%
TCATATTTCATCGCCTTAAC+CGG - chr1_3:44340640-44340659 None:intergenic 35.0%
GAAAGTGGTTCAAGATGATA+AGG + chr1_3:44340750-44340769 Msa0119910:CDS 35.0%
GCTATCATAAAACTTCCTTG+AGG + chr1_3:44340920-44340939 Msa0119910:CDS 35.0%
!!! TCATTTTAAGGCAATCCAAG+AGG + chr1_3:44341026-44341045 Msa0119910:CDS 35.0%
! AAACTCTCTCCAGCTTTTAA+AGG - chr1_3:44341274-44341293 None:intergenic 35.0%
ATCATAAAAGGTGGATGGAA+AGG + chr1_3:44341337-44341356 Msa0119910:CDS 35.0%
CAAAACTGTCAGAAAAAGCT+AGG + chr1_3:44341367-44341386 Msa0119910:CDS 35.0%
AAGCATTATCAACAAGAGTG+CGG - chr1_3:44341413-44341432 None:intergenic 35.0%
AGCTGAGAAGAAAAGGAAAA+AGG + chr1_3:44341476-44341495 Msa0119910:CDS 35.0%
GAAAAAGGAGTCCAAGTATA+TGG + chr1_3:44341491-44341510 Msa0119910:CDS 35.0%
CAACTTCTTTGCCATATACT+TGG - chr1_3:44341505-44341524 None:intergenic 35.0%
CAAGTATATGGCAAAGAAGT+TGG + chr1_3:44341503-44341522 Msa0119910:CDS 35.0%
TTTGCAACAGAAGAAGTTGA+AGG + chr1_3:44341605-44341624 Msa0119910:CDS 35.0%
TGATATTGCTGAAGATGATG+TGG + chr1_3:44341707-44341726 Msa0119910:CDS 35.0%
TGAGAAAATGGAAGACAAAG+AGG + chr1_3:44341776-44341795 Msa0119910:CDS 35.0%
TCAACAAAATGGCTCTTTCA+AGG + chr1_3:44341869-44341888 Msa0119910:CDS 35.0%
TCAATCTCTTCTTTAGTCCA+AGG - chr1_3:44341945-44341964 None:intergenic 35.0%
GAGATTGAGCTATTGAGAAA+AGG + chr1_3:44341957-44341976 Msa0119910:CDS 35.0%
GGAATACAAAAGTTTCCCAA+AGG + chr1_3:44341978-44341997 Msa0119910:CDS 35.0%
! GAGGTTGTTTCAGAATACAT+TGG + chr1_3:44342017-44342036 Msa0119910:CDS 35.0%
ATTCTTCTCTTGTTGACAGT+GGG - chr1_3:44342169-44342188 None:intergenic 35.0%
AATTCTTCTCTTGTTGACAG+TGG - chr1_3:44342170-44342189 None:intergenic 35.0%
ACTGTCAACAAGAGAAGAAT+TGG + chr1_3:44342169-44342188 Msa0119910:CDS 35.0%
TCAACAAGAGAAGAATTGGA+AGG + chr1_3:44342173-44342192 Msa0119910:CDS 35.0%
CAACAAGAGAAGAATTGGAA+GGG + chr1_3:44342174-44342193 Msa0119910:CDS 35.0%
AACAAGAGAAGAATTGGAAG+GGG + chr1_3:44342175-44342194 Msa0119910:CDS 35.0%
!! AGCTTTAAAAACCTTCCCAA+AGG + chr1_3:44342391-44342410 Msa0119910:CDS 35.0%
GAAAAAGTTTGCCATGATGA+AGG + chr1_3:44342478-44342497 Msa0119910:CDS 35.0%
TCATTCTTATCCCATATCTG+TGG + chr1_3:44342537-44342556 Msa0119910:three_prime_UTR 35.0%
CCAAAAATGGGACATATATC+CGG - chr1_3:44342672-44342691 None:intergenic 35.0%
!! GCTTTGAAAAGAATGCTCAT+CGG - chr1_3:44343015-44343034 None:intergenic 35.0%
! GAGCATTCTTTTCAAAGCAA+TGG + chr1_3:44343017-44343036 Msa0119910:three_prime_UTR 35.0%
CTTGTATGCTTCATGTTAGA+AGG - chr1_3:44343112-44343131 None:intergenic 35.0%
CTTCTAACATGAAGCATACA+AGG + chr1_3:44343110-44343129 Msa0119910:three_prime_UTR 35.0%
TAACATGAAGCATACAAGGA+TGG + chr1_3:44343114-44343133 Msa0119910:three_prime_UTR 35.0%
AACATGAAGCATACAAGGAT+GGG + chr1_3:44343115-44343134 Msa0119910:three_prime_UTR 35.0%
AGTCATCCGACGAAAAGTAA+TGG - chr1_3:44337159-44337178 None:intergenic 40.0%
TTTGGAGATCGAAATCCCTT+TGG + chr1_3:44337229-44337248 Msa0119910:CDS 40.0%
! TAGCAATGGTTTGGATCCTA+TGG + chr1_3:44337276-44337295 Msa0119910:CDS 40.0%
! AGCAATGGTTTGGATCCTAT+GGG + chr1_3:44337277-44337296 Msa0119910:CDS 40.0%
CAAGTTGCAATGCTTTCTTG+AGG + chr1_3:44337356-44337375 Msa0119910:intron 40.0%
TCAAATGAGAGGAGCTCTTA+TGG + chr1_3:44337417-44337436 Msa0119910:intron 40.0%
!!! AAAGCCTGCGATTTTTTTCC+TGG - chr1_3:44337893-44337912 None:intergenic 40.0%
!! AGGCTTTAAGTTCCAGCAAT+TGG + chr1_3:44337906-44337925 Msa0119910:intron 40.0%
ATCTTCAAATGTCACGTGCT+AGG + chr1_3:44337929-44337948 Msa0119910:intron 40.0%
CAAAACAGTACATGAGATGG+AGG + chr1_3:44338008-44338027 Msa0119910:intron 40.0%
TTACTGGAGAGAGAAAGAAG+TGG + chr1_3:44338039-44338058 Msa0119910:intron 40.0%
AGAGGGTGAGAGGAATTAAT+TGG - chr1_3:44338148-44338167 None:intergenic 40.0%
GGTGATCTTCATCTTCTTAG+TGG - chr1_3:44338280-44338299 None:intergenic 40.0%
! AGTTGTTGTTCTTTCTTGCC+TGG + chr1_3:44338326-44338345 Msa0119910:intron 40.0%
!!! CTTGCCTGGTTCTTTTTTCA+CGG + chr1_3:44338340-44338359 Msa0119910:intron 40.0%
AGATTGGGAGATGATGAATC+TGG + chr1_3:44338381-44338400 Msa0119910:intron 40.0%
!! TAATAGCTAAACGGGTTGCT+TGG + chr1_3:44338622-44338641 Msa0119910:intron 40.0%
TCCTGAGAAGAGAAATGTTG+GGG + chr1_3:44338702-44338721 Msa0119910:intron 40.0%
GTGTTAAAGTGTGTGCTAGA+GGG - chr1_3:44338733-44338752 None:intergenic 40.0%
GCATGGCAAGTTATTATTGG+AGG - chr1_3:44338756-44338775 None:intergenic 40.0%
AACGGTAGTTAACTACCGTT+CGG + chr1_3:44339069-44339088 Msa0119910:intron 40.0%
AGGTTAATGGAAAGACCGAA+CGG - chr1_3:44339087-44339106 None:intergenic 40.0%
GAATGGTAGTCAATTACCGT+TGG + chr1_3:44339313-44339332 Msa0119910:intron 40.0%
ATGGTAGTCAATTACCGTTG+GGG + chr1_3:44339315-44339334 Msa0119910:intron 40.0%
TCTTATAATGGCCACAGAGT+AGG + chr1_3:44339415-44339434 Msa0119910:intron 40.0%
!! GGCATGAAAAAGTACCATTC+AGG - chr1_3:44339450-44339469 None:intergenic 40.0%
TATACATCATGTGGCTCACT+AGG + chr1_3:44339643-44339662 Msa0119910:intron 40.0%
GGATAGAAATCTAGTGTACG+TGG + chr1_3:44339664-44339683 Msa0119910:intron 40.0%
CAATAGAGCTGGACAATCTT+AGG - chr1_3:44339789-44339808 None:intergenic 40.0%
CTAAGATTGTCCAGCTCTAT+TGG + chr1_3:44339787-44339806 Msa0119910:intron 40.0%
ACAAATGTAGAAGTTTGCGG+TGG - chr1_3:44339852-44339871 None:intergenic 40.0%
GCTCCAATACTCTCAAGATA+AGG - chr1_3:44340102-44340121 None:intergenic 40.0%
!! TGCGAAAGTGTTGAATTTGC+GGG - chr1_3:44340308-44340327 None:intergenic 40.0%
!! GTGCGAAAGTGTTGAATTTG+CGG - chr1_3:44340309-44340328 None:intergenic 40.0%
! ACTTCTCCATCTCTTTAAGG+AGG + chr1_3:44340327-44340346 Msa0119910:intron 40.0%
TGTTTGAACAGCCATTATGG+AGG - chr1_3:44340545-44340564 None:intergenic 40.0%
TACTCACAAGAGCTTCTAGA+TGG + chr1_3:44340583-44340602 Msa0119910:CDS 40.0%
ACTCACAAGAGCTTCTAGAT+GGG + chr1_3:44340584-44340603 Msa0119910:CDS 40.0%
TGTTTCGTCAAACTGTCTTC+CGG + chr1_3:44340618-44340637 Msa0119910:CDS 40.0%
TTGCTGCTGTAAGAATCAGA+TGG - chr1_3:44340790-44340809 None:intergenic 40.0%
! AAGAAAAAATCTGGTGGCGA+CGG + chr1_3:44340814-44340833 Msa0119910:CDS 40.0%
AACTTCCTTGAGGTTTCATC+CGG + chr1_3:44340930-44340949 Msa0119910:CDS 40.0%
TGATCCACAAGACTTCTACA+AGG + chr1_3:44341131-44341150 Msa0119910:CDS 40.0%
AACACCTTGTAGAAGTCTTG+TGG - chr1_3:44341138-44341157 None:intergenic 40.0%
!! TGTTTGCTCCTGCTTTTATG+AGG + chr1_3:44341154-44341173 Msa0119910:CDS 40.0%
!! CTCCTGCTTTTATGAGGAAT+GGG + chr1_3:44341160-44341179 Msa0119910:CDS 40.0%
AATCAACCAATTCCGTCTCT+AGG + chr1_3:44341195-44341214 Msa0119910:CDS 40.0%
CTGAATCCCGAGATCATAAA+AGG + chr1_3:44341325-44341344 Msa0119910:CDS 40.0%
AATCCCGAGATCATAAAAGG+TGG + chr1_3:44341328-44341347 Msa0119910:CDS 40.0%
! CATCCACCTTTTATGATCTC+GGG - chr1_3:44341334-44341353 None:intergenic 40.0%
! CCATCCACCTTTTATGATCT+CGG - chr1_3:44341335-44341354 None:intergenic 40.0%
ACTGTCAGAAAAAGCTAGGA+AGG + chr1_3:44341371-44341390 Msa0119910:CDS 40.0%
CCTTTCGTCTCAGTATTCTA+GGG - chr1_3:44341446-44341465 None:intergenic 40.0%
TCCTTTCGTCTCAGTATTCT+AGG - chr1_3:44341447-44341466 None:intergenic 40.0%
AATACTGAGACGAAAGGAAG+AGG + chr1_3:44341449-44341468 Msa0119910:CDS 40.0%
AGGCAAAAGCTGAGAAGAAA+AGG + chr1_3:44341469-44341488 Msa0119910:CDS 40.0%
GTATATGGCAAAGAAGTTGG+AGG + chr1_3:44341506-44341525 Msa0119910:CDS 40.0%
TTTCTCCTCTTCAGCAATTC+TGG - chr1_3:44341544-44341563 None:intergenic 40.0%
ACAGAAGAAGTTGAAGGAGA+AGG + chr1_3:44341611-44341630 Msa0119910:CDS 40.0%
AGAAGGAGAAAAAGCTCTTG+CGG + chr1_3:44341628-44341647 Msa0119910:CDS 40.0%
AGTATGTGTTGTGACAAGAC+AGG - chr1_3:44341687-44341706 None:intergenic 40.0%
GAGAGGTTTGTGTGAGAAAA+TGG + chr1_3:44341764-44341783 Msa0119910:CDS 40.0%
ACTGAGTTGCAAGAAAAACG+TGG + chr1_3:44341830-44341849 Msa0119910:CDS 40.0%
AATGGCTCTTTCAAGGCTAA+TGG + chr1_3:44341876-44341895 Msa0119910:CDS 40.0%
TAGAGAAGAAGGAGAAACCT+TGG + chr1_3:44341925-44341944 Msa0119910:CDS 40.0%
AGTTTCCCAAAGGAACTTCA+AGG + chr1_3:44341988-44342007 Msa0119910:CDS 40.0%
CATCTCCTTGAAGTTCCTTT+GGG - chr1_3:44341996-44342015 None:intergenic 40.0%
CAAAGGAACTTCAAGGAGAT+GGG + chr1_3:44341995-44342014 Msa0119910:CDS 40.0%
GTTTCAGAATACATTGGCAC+TGG + chr1_3:44342023-44342042 Msa0119910:CDS 40.0%
TTCTTCTCTTGTTGACAGTG+GGG - chr1_3:44342168-44342187 None:intergenic 40.0%
! CCATTTTCAGTTATTGTGGC+TGG - chr1_3:44342209-44342228 None:intergenic 40.0%
CCAGCCACAATAACTGAAAA+TGG + chr1_3:44342206-44342225 Msa0119910:CDS 40.0%
GACAACAACAATTCCAACAC+CGG + chr1_3:44342274-44342293 Msa0119910:CDS 40.0%
!! TTGATGCTGCTTGTTGTTGT+TGG - chr1_3:44342302-44342321 None:intergenic 40.0%
AACAACAAGCAGCATCAACT+CGG + chr1_3:44342304-44342323 Msa0119910:CDS 40.0%
TCAAGGAGTTTCAGAACAAG+AGG + chr1_3:44342334-44342353 Msa0119910:CDS 40.0%
!! ATCTCTGGTTAGCTTCCTTT+GGG - chr1_3:44342409-44342428 None:intergenic 40.0%
AAAGGAAGCTAACCAGAGAT+GGG + chr1_3:44342409-44342428 Msa0119910:CDS 40.0%
! CTTTTTCTTGCACTGGATCA+CGG - chr1_3:44342465-44342484 None:intergenic 40.0%
!! TGGCAAACTTTTTCTTGCAC+TGG - chr1_3:44342472-44342491 None:intergenic 40.0%
CCTGAAACTTTCCTTCATCA+TGG - chr1_3:44342492-44342511 None:intergenic 40.0%
CCATGATGAAGGAAAGTTTC+AGG + chr1_3:44342489-44342508 Msa0119910:CDS 40.0%
! CCGGATATATGTCCCATTTT+TGG + chr1_3:44342669-44342688 Msa0119910:three_prime_UTR 40.0%
! AGTTTTCAGTGCAACAGTTC+TGG + chr1_3:44342817-44342836 Msa0119910:three_prime_UTR 40.0%
! GTTTTCAGTGCAACAGTTCT+GGG + chr1_3:44342818-44342837 Msa0119910:three_prime_UTR 40.0%
TTACCAATGTTCATCGGCAA+TGG + chr1_3:44342916-44342935 Msa0119910:three_prime_UTR 40.0%
TACCAATGTTCATCGGCAAT+GGG + chr1_3:44342917-44342936 Msa0119910:three_prime_UTR 40.0%
AGCAATGGCTGCAAATGAAA+AGG + chr1_3:44343032-44343051 Msa0119910:three_prime_UTR 40.0%
ATGCTTCATGTTAGAAGGGA+AGG - chr1_3:44343107-44343126 None:intergenic 40.0%
! CTACCAGAAGCATGAGAATC+AGG - chr1_3:44337121-44337140 None:intergenic 45.0%
GATTCTCATGCTTCTGGTAG+TGG + chr1_3:44337121-44337140 Msa0119910:CDS 45.0%
TCGAAATCCCTTTGGTGGAA+TGG + chr1_3:44337237-44337256 Msa0119910:CDS 45.0%
CGAAATCCCTTTGGTGGAAT+GGG + chr1_3:44337238-44337257 Msa0119910:CDS 45.0%
ACTTCCTCTTGCATTCCCAT+AGG - chr1_3:44337295-44337314 None:intergenic 45.0%
! TGCAACTTGTTCTCAGTAGC+AGG - chr1_3:44337345-44337364 None:intergenic 45.0%
CGCGCGCATATATTGAAGAA+AGG - chr1_3:44337528-44337547 None:intergenic 45.0%
! GTGGAGAAGATGAAAGGTGT+AGG + chr1_3:44338058-44338077 Msa0119910:intron 45.0%
ATGGGGATGTATCAAGTGAG+AGG - chr1_3:44338184-44338203 None:intergenic 45.0%
TGGTCCGTGAAAAAAGAACC+AGG - chr1_3:44338347-44338366 None:intergenic 45.0%
ATCCACCTCACTTAAGTGAG+TGG + chr1_3:44338528-44338547 Msa0119910:intron 45.0%
ACTTAAGTGAGTGGCCACAT+GGG + chr1_3:44338537-44338556 Msa0119910:intron 45.0%
TTTGACCCGGTCAAAATAGG+AGG + chr1_3:44338561-44338580 Msa0119910:intron 45.0%
TTGACCCGGTCAAAATAGGA+GGG + chr1_3:44338562-44338581 Msa0119910:intron 45.0%
AAAGCATATCGAATTGGGCC+GGG - chr1_3:44338663-44338682 None:intergenic 45.0%
CAAAGCATATCGAATTGGGC+CGG - chr1_3:44338664-44338683 None:intergenic 45.0%
ACCCCAACATTTCTCTTCTC+AGG - chr1_3:44338706-44338725 None:intergenic 45.0%
GGTGTTAAAGTGTGTGCTAG+AGG - chr1_3:44338734-44338753 None:intergenic 45.0%
GGTAGTTAACTACCGTTGAG+GGG - chr1_3:44339066-44339085 None:intergenic 45.0%
CGGTAGTTAACTACCGTTGA+GGG - chr1_3:44339067-44339086 None:intergenic 45.0%
ACGGTAGTTAACTACCGTTG+AGG - chr1_3:44339068-44339087 None:intergenic 45.0%
GGTGTATGGACAGAGGTTAA+TGG - chr1_3:44339100-44339119 None:intergenic 45.0%
TTACACAGGTGTATGGACAG+AGG - chr1_3:44339107-44339126 None:intergenic 45.0%
CAGCTACAGTTAACTACCAC+TGG - chr1_3:44339260-44339279 None:intergenic 45.0%
CAGCGATGGTTAATTGCAGT+CGG + chr1_3:44339283-44339302 Msa0119910:intron 45.0%
TTGCAGTCGGAAAGACTGAA+TGG + chr1_3:44339296-44339315 Msa0119910:intron 45.0%
TGGTAGTCAATTACCGTTGG+GGG + chr1_3:44339316-44339335 Msa0119910:intron 45.0%
GCGAGCATGTATACATCATG+TGG + chr1_3:44339634-44339653 Msa0119910:intron 45.0%
TGTTTCAGACCATGACGATG+AGG - chr1_3:44339720-44339739 None:intergenic 45.0%
AAACATCTTCCTCCTCGACA+TGG + chr1_3:44339735-44339754 Msa0119910:intron 45.0%
TTGCATAGCAAGAAGGGGTA+GGG - chr1_3:44339828-44339847 None:intergenic 45.0%
ATTGCATAGCAAGAAGGGGT+AGG - chr1_3:44339829-44339848 None:intergenic 45.0%
! GTGGATTGCATAGCAAGAAG+GGG - chr1_3:44339833-44339852 None:intergenic 45.0%
!! GGTGGATTGCATAGCAAGAA+GGG - chr1_3:44339834-44339853 None:intergenic 45.0%
! CGGCCTTATCTTGAGAGTAT+TGG + chr1_3:44340096-44340115 Msa0119910:intron 45.0%
CGCACTTCTCCATCTCTTTA+AGG + chr1_3:44340324-44340343 Msa0119910:intron 45.0%
GTCAAACTGTCTTCCGGTTA+AGG + chr1_3:44340624-44340643 Msa0119910:CDS 45.0%
ACCGAGAAGTTTAAGTGCAG+CGG - chr1_3:44340686-44340705 None:intergenic 45.0%
TTTGTCCGGATGAAACCTCA+AGG - chr1_3:44340938-44340957 None:intergenic 45.0%
! TTTGGCAGCTTCAGTTTGCT+CGG - chr1_3:44340980-44340999 None:intergenic 45.0%
TCTTGTGGATCACAGTCAGT+GGG - chr1_3:44341123-44341142 None:intergenic 45.0%
!! GCTCCTGCTTTTATGAGGAA+TGG + chr1_3:44341159-44341178 Msa0119910:CDS 45.0%
!! CTGCTTTTATGAGGAATGGG+CGG + chr1_3:44341163-44341182 Msa0119910:CDS 45.0%
GACTTATCATCGCCTAGAGA+CGG - chr1_3:44341210-44341229 None:intergenic 45.0%
AAGATCAAACTCATCCGCCT+GGG - chr1_3:44341298-44341317 None:intergenic 45.0%
CCGAGATCATAAAAGGTGGA+TGG + chr1_3:44341332-44341351 Msa0119910:CDS 45.0%
CCCTAGAATACTGAGACGAA+AGG + chr1_3:44341443-44341462 Msa0119910:CDS 45.0%
TATGGCAAAGAAGTTGGAGG+AGG + chr1_3:44341509-44341528 Msa0119910:CDS 45.0%
GGAGAAACAACGAAAAGCAG+AGG + chr1_3:44341557-44341576 Msa0119910:CDS 45.0%
CTTCTGTTGCAAAGCAGCTT+CGG - chr1_3:44341598-44341617 None:intergenic 45.0%
TTCTCTATGTAGCCTGCTAG+AGG - chr1_3:44341912-44341931 None:intergenic 45.0%
AGCAGGCTACATAGAGAAGA+AGG + chr1_3:44341914-44341933 Msa0119910:CDS 45.0%
CCATCTCCTTGAAGTTCCTT+TGG - chr1_3:44341997-44342016 None:intergenic 45.0%
CCAAAGGAACTTCAAGGAGA+TGG + chr1_3:44341994-44342013 Msa0119910:CDS 45.0%
GATGCAATTGATTGTGCTGC+AGG - chr1_3:44342146-44342165 None:intergenic 45.0%
!! CTGCTTGTTGTTGTTGGTAC+CGG - chr1_3:44342296-44342315 None:intergenic 45.0%
ATCAACTCGGAAGACTCTCA+AGG + chr1_3:44342317-44342336 Msa0119910:CDS 45.0%
!! CATCTCTGGTTAGCTTCCTT+TGG - chr1_3:44342410-44342429 None:intergenic 45.0%
CAAAGGAAGCTAACCAGAGA+TGG + chr1_3:44342408-44342427 Msa0119910:CDS 45.0%
ATGCCTAGCTATGATTGAGC+AGG - chr1_3:44342613-44342632 None:intergenic 45.0%
CCAACTGTCTATCATAGGAC+CGG + chr1_3:44342650-44342669 Msa0119910:three_prime_UTR 45.0%
AACCCATTGCCGATGAACAT+TGG - chr1_3:44342922-44342941 None:intergenic 45.0%
AATGTTCATCGGCAATGGGT+TGG + chr1_3:44342921-44342940 Msa0119910:three_prime_UTR 45.0%
TTAGAAGGGAAGGAGAAGCA+GGG - chr1_3:44343097-44343116 None:intergenic 45.0%
ATGAAGCATACAAGGATGGG+CGG + chr1_3:44343118-44343137 Msa0119910:three_prime_UTR 45.0%
ACAAGGATGGGCGGTAATTA+TGG + chr1_3:44343127-44343146 Msa0119910:three_prime_UTR 45.0%
GGGCGGTAATTATGGAATCT+TGG + chr1_3:44343135-44343154 Msa0119910:three_prime_UTR 45.0%
!! TATATATATATATATATATG+GGG - chr1_3:44337392-44337411 None:intergenic 5.0%
!! TTTGATTAAAAAATTAAAAA+AGG - chr1_3:44338457-44338476 None:intergenic 5.0%
GAAGCATGAGAATCAGGTGG+TGG - chr1_3:44337115-44337134 None:intergenic 50.0%
! CCAGAAGCATGAGAATCAGG+TGG - chr1_3:44337118-44337137 None:intergenic 50.0%
CCACCTGATTCTCATGCTTC+TGG + chr1_3:44337115-44337134 Msa0119910:CDS 50.0%
!! TCTCATGCTTCTGGTAGTGG+TGG + chr1_3:44337124-44337143 Msa0119910:CDS 50.0%
!! CTCATGCTTCTGGTAGTGGT+GGG + chr1_3:44337125-44337144 Msa0119910:CDS 50.0%
GGAGATCGAAATCCCTTTGG+TGG + chr1_3:44337232-44337251 Msa0119910:CDS 50.0%
AATCCCTTTGGTGGAATGGG+AGG + chr1_3:44337241-44337260 Msa0119910:CDS 50.0%
ATCCCTTTGGTGGAATGGGA+GGG + chr1_3:44337242-44337261 Msa0119910:CDS 50.0%
ATCCCTCCCATTCCACCAAA+GGG - chr1_3:44337247-44337266 None:intergenic 50.0%
TTTGGTGGAATGGGAGGGAT+GGG + chr1_3:44337247-44337266 Msa0119910:CDS 50.0%
GGGAAGAGGTAGCAATGGTT+TGG + chr1_3:44337267-44337286 Msa0119910:CDS 50.0%
GGATCCTATGGGAATGCAAG+AGG + chr1_3:44337288-44337307 Msa0119910:CDS 50.0%
! GCAAGAGGAAGTGTGCATCA+AGG + chr1_3:44337303-44337322 Msa0119910:CDS 50.0%
AGAGGAGCTCTTATGGTGAG+AGG + chr1_3:44337424-44337443 Msa0119910:intron 50.0%
CTCTTATGGTGAGAGGTGAC+AGG + chr1_3:44337431-44337450 Msa0119910:intron 50.0%
GGTGTTTGAGGGATGGATGA+AGG - chr1_3:44337553-44337572 None:intergenic 50.0%
CATCCATCCCTCAAACACCA+CGG + chr1_3:44337554-44337573 Msa0119910:intron 50.0%
TGTGGCCACTCACTTAAGTG+AGG - chr1_3:44338536-44338555 None:intergenic 50.0%
CACTTAAGTGAGTGGCCACA+TGG + chr1_3:44338536-44338555 Msa0119910:intron 50.0%
! GGCTTTGACCCGGTCAAAAT+AGG + chr1_3:44338558-44338577 Msa0119910:intron 50.0%
TGACCCGGTCAAAATAGGAG+GGG + chr1_3:44338563-44338582 Msa0119910:intron 50.0%
! TCACCCCCTTTTGCAACTCA+GGG - chr1_3:44338590-44338609 None:intergenic 50.0%
! TTCACCCCCTTTTGCAACTC+AGG - chr1_3:44338591-44338610 None:intergenic 50.0%
!! AGCTAAACGGGTTGCTTGGT+AGG + chr1_3:44338626-44338645 Msa0119910:intron 50.0%
!! AAACGGGTTGCTTGGTAGGT+TGG + chr1_3:44338630-44338649 Msa0119910:intron 50.0%
!! TGGTAGGTTGGTTGGTTACC+CGG + chr1_3:44338642-44338661 Msa0119910:intron 50.0%
CGACTGCAATTAACCATCGC+TGG - chr1_3:44339285-44339304 None:intergenic 50.0%
GTAGGCCCCTTTATCCTGAA+TGG + chr1_3:44339433-44339452 Msa0119910:intron 50.0%
TTCAGACCATGACGATGAGG+AGG - chr1_3:44339717-44339736 None:intergenic 50.0%
! CTCGACATGGTGATTTGCCT+GGG + chr1_3:44339748-44339767 Msa0119910:intron 50.0%
! TCGACATGGTGATTTGCCTG+GGG + chr1_3:44339749-44339768 Msa0119910:intron 50.0%
GGCTGCATTTCCAATAGAGC+TGG - chr1_3:44339800-44339819 None:intergenic 50.0%
!! CGGTGGATTGCATAGCAAGA+AGG - chr1_3:44339835-44339854 None:intergenic 50.0%
TTGAATTTGCGGGCGTGAAG+TGG - chr1_3:44340298-44340317 None:intergenic 50.0%
TGAACAGCCATTATGGAGGC+TGG - chr1_3:44340541-44340560 None:intergenic 50.0%
GAAGTTTAAGTGCAGCGGCA+TGG - chr1_3:44340681-44340700 None:intergenic 50.0%
GCCGCTGCACTTAAACTTCT+CGG + chr1_3:44340682-44340701 Msa0119910:CDS 50.0%
GAGGTTTCATCCGGACAAAC+AGG + chr1_3:44340939-44340958 Msa0119910:CDS 50.0%
CCAACACTGCATAAGCCTCT+TGG - chr1_3:44341044-44341063 None:intergenic 50.0%
CCAAGAGGCTTATGCAGTGT+TGG + chr1_3:44341041-44341060 Msa0119910:CDS 50.0%
GTCTTGTGGATCACAGTCAG+TGG - chr1_3:44341124-44341143 None:intergenic 50.0%
CGCCCATTCCTCATAAAAGC+AGG - chr1_3:44341165-44341184 None:intergenic 50.0%
! CTTTTATGAGGAATGGGCGG+TGG + chr1_3:44341166-44341185 Msa0119910:CDS 50.0%
TCATCGCCTAGAGACGGAAT+TGG - chr1_3:44341204-44341223 None:intergenic 50.0%
AGATCAAACTCATCCGCCTG+GGG - chr1_3:44341297-44341316 None:intergenic 50.0%
CAAGATCAAACTCATCCGCC+TGG - chr1_3:44341299-44341318 None:intergenic 50.0%
GAAGTTGGAGGAGGAAGAAG+CGG + chr1_3:44341518-44341537 Msa0119910:CDS 50.0%
GGAGAAAAAGCTCTTGCGGA+AGG + chr1_3:44341632-44341651 Msa0119910:CDS 50.0%
GGAAACAGTAGTCCTCTAGC+AGG + chr1_3:44341897-44341916 Msa0119910:CDS 50.0%
AGGAACTTCAAGGAGATGGG+AGG + chr1_3:44341998-44342017 Msa0119910:CDS 50.0%
GTTGTTGTCGTCGTCATCGT+CGG - chr1_3:44342263-44342282 None:intergenic 50.0%
!! GTTGTTGTTGGTACCGGTGT+TGG - chr1_3:44342290-44342309 None:intergenic 50.0%
GAGTTTCAGAACAAGAGGCG+TGG + chr1_3:44342339-44342358 Msa0119910:CDS 50.0%
!! CTGGTTAGCTTCCTTTGGGA+AGG - chr1_3:44342405-44342424 None:intergenic 50.0%
GCTCCTGCTCAATCATAGCT+AGG + chr1_3:44342607-44342626 Msa0119910:three_prime_UTR 50.0%
CCGGTCCTATGATAGACAGT+TGG - chr1_3:44342653-44342672 None:intergenic 50.0%
AGGAGAAGCAGGGATCATCA+TGG - chr1_3:44343087-44343106 None:intergenic 50.0%
GTTAGAAGGGAAGGAGAAGC+AGG - chr1_3:44343098-44343117 None:intergenic 50.0%
! GCATGAGAATCAGGTGGTGG+TGG - chr1_3:44337112-44337131 None:intergenic 55.0%
CATCCCTCCCATTCCACCAA+AGG - chr1_3:44337248-44337267 None:intergenic 55.0%
CTTTGGTGGAATGGGAGGGA+TGG + chr1_3:44337246-44337265 Msa0119910:CDS 55.0%
GGGATGGGAAGAGGTAGCAA+TGG + chr1_3:44337262-44337281 Msa0119910:CDS 55.0%
GCATCAAGGTCCTCCTCGTA+AGG + chr1_3:44337317-44337336 Msa0119910:intron 55.0%
!! AAGGGCACCGTGGTGTTTGA+GGG - chr1_3:44337564-44337583 None:intergenic 55.0%
AAGTGAGGTGGATGCCACGT+AGG - chr1_3:44338521-44338540 None:intergenic 55.0%
GGCCACTCACTTAAGTGAGG+TGG - chr1_3:44338533-44338552 None:intergenic 55.0%
GACCCGGTCAAAATAGGAGG+GGG + chr1_3:44338564-44338583 Msa0119910:intron 55.0%
!! GGGTTGCTTGGTAGGTTGGT+TGG + chr1_3:44338634-44338653 Msa0119910:intron 55.0%
AACTGTAGCTGAGCCAGCGA+TGG + chr1_3:44339269-44339288 Msa0119910:intron 55.0%
GGATAAAGGGGCCTACTCTG+TGG - chr1_3:44339429-44339448 None:intergenic 55.0%
AACGTCGCTGCTTGTGGTTG+AGG - chr1_3:44339692-44339711 None:intergenic 55.0%
GGCAAATCACCATGTCGAGG+AGG - chr1_3:44339747-44339766 None:intergenic 55.0%
CCAGGCAAATCACCATGTCG+AGG - chr1_3:44339750-44339769 None:intergenic 55.0%
! CCTCGACATGGTGATTTGCC+TGG + chr1_3:44339747-44339766 Msa0119910:intron 55.0%
GCAAGAAGGGGTAGGGACAT+GGG - chr1_3:44339821-44339840 None:intergenic 55.0%
AGCAAGAAGGGGTAGGGACA+TGG - chr1_3:44339822-44339841 None:intergenic 55.0%
TGCGTGAGAAGTGAGGAGAG+TGG + chr1_3:44340123-44340142 Msa0119910:intron 55.0%
GCGTGAGAAGTGAGGAGAGT+GGG + chr1_3:44340124-44340143 Msa0119910:intron 55.0%
!! GAGTTGGGGGCGTTTCTTAC+AGG - chr1_3:44340214-44340233 None:intergenic 55.0%
AATTTGCGGGCGTGAAGTGG+CGG - chr1_3:44340295-44340314 None:intergenic 55.0%
GCGATGAAATATGACCCCGC+TGG + chr1_3:44340646-44340665 Msa0119910:CDS 55.0%
CATGGAAAGAGTGACCAGCG+GGG - chr1_3:44340663-44340682 None:intergenic 55.0%
GCATGGAAAGAGTGACCAGC+GGG - chr1_3:44340664-44340683 None:intergenic 55.0%
GGCATGGAAAGAGTGACCAG+CGG - chr1_3:44340665-44340684 None:intergenic 55.0%
ACAGCAGCTGCCTGTTTGTC+CGG - chr1_3:44340952-44340971 None:intergenic 55.0%
TATGAGGAATGGGCGGTGGT+CGG + chr1_3:44341170-44341189 Msa0119910:CDS 55.0%
AAGCTGGAGAGAGTTTCCCC+AGG + chr1_3:44341278-44341297 Msa0119910:CDS 55.0%
AGCGGCCAGAATTGCTGAAG+AGG + chr1_3:44341536-44341555 Msa0119910:CDS 55.0%
! ATCGGGCTTCTGGAGGAGAA+CGG - chr1_3:44342084-44342103 None:intergenic 55.0%
CAGCTACTCGTTCCCATCTC+TGG - chr1_3:44342424-44342443 None:intergenic 55.0%
CACTGGATCACGGTCTTTCC+AGG - chr1_3:44342455-44342474 None:intergenic 55.0%
GGAATGGGAGGGATGGGAAG+AGG + chr1_3:44337253-44337272 Msa0119910:CDS 60.0%
TCAGTAGCAGGCGCCTTACG+AGG - chr1_3:44337333-44337352 None:intergenic 60.0%
GCACCGTGGTGTTTGAGGGA+TGG - chr1_3:44337560-44337579 None:intergenic 60.0%
!! CAAGGGCACCGTGGTGTTTG+AGG - chr1_3:44337565-44337584 None:intergenic 60.0%
!! AGGAAGATGCAAGGGCACCG+TGG - chr1_3:44337574-44337593 None:intergenic 60.0%
! TGGCCACATGGGCTTTGACC+CGG + chr1_3:44338548-44338567 Msa0119910:intron 60.0%
TGACCGGGTCAAAGCCCATG+TGG - chr1_3:44338554-44338573 None:intergenic 60.0%
!!! GGCCCCCTCCTATTTTGACC+GGG - chr1_3:44338569-44338588 None:intergenic 60.0%
!!! GGGCCCCCTCCTATTTTGAC+CGG - chr1_3:44338570-44338589 None:intergenic 60.0%
AGGGGGCCCTGAGTTGCAAA+AGG + chr1_3:44338581-44338600 Msa0119910:intron 60.0%
GGGGGCCCTGAGTTGCAAAA+GGG + chr1_3:44338582-44338601 Msa0119910:intron 60.0%
GGGGCCCTGAGTTGCAAAAG+GGG + chr1_3:44338583-44338602 Msa0119910:intron 60.0%
GGGCCCTGAGTTGCAAAAGG+GGG + chr1_3:44338584-44338603 Msa0119910:intron 60.0%
CGTTCGCCTCCTCATCGTCA+TGG + chr1_3:44339708-44339727 Msa0119910:intron 60.0%
TGGAGCGTGCGTGAGAAGTG+AGG + chr1_3:44340116-44340135 Msa0119910:intron 60.0%
!! GGGGGCGTTTCTTACAGGCT+TGG - chr1_3:44340209-44340228 None:intergenic 60.0%
AGCGAGCGAGCGAGAGAGTT+GGG - chr1_3:44340229-44340248 None:intergenic 60.0%
ATTTGCGGGCGTGAAGTGGC+GGG - chr1_3:44340294-44340313 None:intergenic 60.0%
TGGCCAGCCAGCCTCCATAA+TGG + chr1_3:44340531-44340550 Msa0119910:CDS 60.0%
CAGCCATTATGGAGGCTGGC+TGG - chr1_3:44340537-44340556 None:intergenic 60.0%
CTGGAGAGAGTTTCCCCAGG+CGG + chr1_3:44341281-44341300 Msa0119910:CDS 60.0%
GTCGTCGTCATCGTCGGTGT+TGG - chr1_3:44342257-44342276 None:intergenic 60.0%
CGAGTAGCTGCAGCTGTACC+TGG + chr1_3:44342434-44342453 Msa0119910:CDS 60.0%
GTAGCAGGCGCCTTACGAGG+AGG - chr1_3:44337330-44337349 None:intergenic 65.0%
GAGGCGAACGTCGCTGCTTG+TGG - chr1_3:44339698-44339717 None:intergenic 65.0%
GGTGCACGAGTCTGAACCCC+AGG - chr1_3:44339768-44339787 None:intergenic 65.0%
CGAGCGAGCGAGAGAGTTGG+GGG - chr1_3:44340227-44340246 None:intergenic 65.0%
GCGAGCGAGCGAGAGAGTTG+GGG - chr1_3:44340228-44340247 None:intergenic 65.0%
GAGCGAGCGAGCGAGAGAGT+TGG - chr1_3:44340230-44340249 None:intergenic 65.0%
! AGAGGCGTGGTCTGCAGTGC+AGG + chr1_3:44342352-44342371 Msa0119910:CDS 65.0%
! CGGGCGTGAAGTGGCGGGAT+CGG - chr1_3:44340289-44340308 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44337106 44343163 44337106 ID=Msa0119910;Name=Msa0119910
chr1_3 mRNA 44337106 44343163 44337106 ID=Msa0119910-mRNA-1;Parent=Msa0119910;Name=Msa0119910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.5|0.5|1|1|2|631|752
chr1_3 exon 44337106 44337324 44337106 ID=Msa0119910-mRNA-1:exon:13210;Parent=Msa0119910-mRNA-1
chr1_3 exon 44340493 44343163 44340493 ID=Msa0119910-mRNA-1:exon:13211;Parent=Msa0119910-mRNA-1
chr1_3 CDS 44337106 44337324 44337106 ID=Msa0119910-mRNA-1:cds;Parent=Msa0119910-mRNA-1
chr1_3 CDS 44340493 44342532 44340493 ID=Msa0119910-mRNA-1:cds;Parent=Msa0119910-mRNA-1
chr1_3 three_prime_UTR 44342533 44343163 44342533 ID=Msa0119910-mRNA-1:three_prime_utr;Parent=Msa0119910-mRNA-1
Gene Sequence

>Msa0119910

ATGCCACCACCACCTGATTCTCATGCTTCTGGTAGTGGTGGGAGTATAAACCATTACTTTTCGTCGGATGACTTTCCGTTTCAGTTCAATCATCGGAATCCTGATGATATTTTTGCTGAATATTTTGGAGATCGAAATCCCTTTGGTGGAATGGGAGGGATGGGAAGAGGTAGCAATGGTTTGGATCCTATGGGAATGCAAGAGGAAGTGTGCATCAAGGTTGGAGTGATTCAATTCAAGAGTTTTTTGTATTTTGTTGGCCAGCCAGCCTCCATAATGGCTGTTCAAACAAAATACCGTCTTATTACTTACTCACAAGAGCTTCTAGATGGGCAGCCTATTTTTGTTTCGTCAAACTGTCTTCCGGTTAAGGCGATGAAATATGACCCCGCTGGTCACTCTTTCCATGCCGCTGCACTTAAACTTCTCGGTGTTAATAAGGAAGAAGATAACAAAGATGATGATGATAATAATAAGAAAGTGGTTCAAGATGATAAGGAACATGTTTATTTGCCATCTGATTCTTACAGCAGCAAGAGTAAGAAAAAATCTGGTGGCGACGGAGACAAGCAACAGCAAGATCATTATGCATTATTGGGTCTGAGTCATCTTAGATATCTTGCTACGGAAGATCAAATTCGTAAAAGCTATCATAAAACTTCCTTGAGGTTTCATCCGGACAAACAGGCAGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCCAAAGAAGCAAAGAAGATTGAAATTGACGTTCATTTTAAGGCAATCCAAGAGGCTTATGCAGTGTTGGTTGATCCCGTAAAAAGAAGAATTTATGATTCTACAGACGAGTTTGATGATGAGATTCCCACTGACTGTGATCCACAAGACTTCTACAAGGTGTTTGCTCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCGTCTCTAGGCGATGATAAGTCTTCAATAAAGGAAGTTGATAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCGGATGAGTTTGATCTTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTGAGACGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTATATGGCAAAGAAGTTGGAGGAGGAAGAAGCGGCCAGAATTGCTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGTTGAAGGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTGTCTTGTCACAACACATACTTGATATTGCTGAAGATGATGTGGAAGAGCTTTGCATGTCATTTGATATTGAACAATTGAGAGGTTTGTGTGAGAAAATGGAAGACAAAGAGGTGTTAGAGCAAGCAGAAGCTCTAAAAGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTCTTTCAAGGCTAATGGAAACAGTAGTCCTCTAGCAGGCTACATAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCCGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAGAGGAAACCTGCAGCACAATCAATTGCATCCCCACTGTCAACAAGAGAAGAATTGGAAGGGGTATCAATACCAGCCACAATAACTGAAAATGGTGAAGCCAAAACAACAACTACTATACCAACACCGACGATGACGACGACAACAACAATTCCAACACCGGTACCAACAACAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGGCGTGGTCTGCAGTGCAGGAAAGAGCGTTAGTTCAAGCTTTAAAAACCTTCCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGAAAGACCGTGATCCAGTGCAAGAAAAAGTTTGCCATGATGAAGGAAAGTTTCAGGAACAAGAAAACTGCTGTTTGA
Protein sequence

>Msa0119910

MPPPPDSHASGSGGSINHYFSSDDFPFQFNHRNPDDIFAEYFGDRNPFGGMGGMGRGSNGLDPMGMQEEVCIKVGVIQFKSFLYFVGQPASIMAVQTKYRLITYSQELLDGQPIFVSSNCLPVKAMKYDPAGHSFHAAALKLLGVNKEEDNKDDDDNNKKVVQDDKEHVYLPSDSYSSKSKKKSGGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFAPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSWREFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKKLEEEEAARIAEEEKQRKAEEDKKAAEAALQQKKLKEKEKKLLRKERTRLRTLSRPVLSQHILDIAEDDVEELCMSFDIEQLRGLCEKMEDKEVLEQAEALKDALSCKKNVVDEKSNQQNGSFKANGNSSPLAGYIEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATITENGEAKTTTTIPTPTMTTTTTIPTPVPTTTSSINSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKESFRNKKTAV*