AlfalfaGEDB | Msa1383740

M. sativa cultivar zhongmu-4 / Msa1383740

KEGG: K09522
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0040008 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383740	XP_013462221.2	97.554	654	15	1	10	663	1	653	0.0	1309

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383740	sp\|Q7TQ20\|DNJC2_RAT	35.294	595	284	16	101	662	83	609	3.62e-89	293

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383740	A0A396IZE3	97.554	654	15	1	10	663	1	653	0.0	1309

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TFs/TRs:

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Gene ID	Type	Classification
Msa1383740	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001330	Msa1383740	0.906226	1.860621e-80	-8.615850e-47
Msa0002560	Msa1383740	0.842592	2.353918e-58	-8.615850e-47
Msa0003630	Msa1383740	0.849386	3.343956e-60	-8.615850e-47
Msa0007850	Msa1383740	0.803260	3.794434e-49	-8.615850e-47
Msa0008200	Msa1383740	0.802670	5.026062e-49	-8.615850e-47
Msa0010770	Msa1383740	0.824797	6.643733e-54	-8.615850e-47
Msa0015120	Msa1383740	0.802506	5.432423e-49	-8.615850e-47
Msa0023330	Msa1383740	0.814928	1.200086e-51	-8.615850e-47
Msa0028930	Msa1383740	0.803294	3.733415e-49	-8.615850e-47
Msa0030300	Msa1383740	0.804413	2.186620e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383740	MtrunA17_Chr3g0142871	97.554	654	15	1	10	663	1	653	0.0	1309
Msa1383740	MtrunA17_Chr7g0269901	96.942	654	19	1	10	663	1	653	0.0	1305
Msa1383740	MtrunA17_Chr3g0142891	83.712	264	35	2	402	663	1	258	6.80e-145	421
Msa1383740	MtrunA17_Chr8g0383991	29.439	214	95	3	452	662	140	300	6.85e-21	94.0
Msa1383740	MtrunA17_Chr4g0061421	30.380	237	113	9	107	306	9	230	3.21e-17	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383740	AT3G11450.1	63.788	660	211	11	13	663	7	647	0.0	733
Msa1383740	AT5G06110.1	59.342	669	240	10	11	660	5	660	0.0	711
Msa1383740	AT5G06110.2	59.342	669	240	10	11	660	5	660	0.0	711
Msa1383740	AT5G45420.2	31.959	194	87	3	468	661	158	306	6.61e-19	88.6
Msa1383740	AT5G45420.1	31.959	194	87	3	468	661	158	306	6.61e-19	88.6
Msa1383740	AT5G45420.3	31.959	194	87	3	468	661	158	306	6.61e-19	88.6
Msa1383740	AT1G74250.1	29.167	240	117	6	107	306	12	238	7.83e-16	81.6

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Find 133 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGCTAACCAGAGAT+GGG	0.594916	tig0020612:+20779	Msa1383740:CDS
AACACCTTGTAGAAGTCTTG+TGG	0.578361	tig0020612:-19508	None:intergenic
AACTAGAGAAGAATTGGAAG+GGG	0.608691	tig0020612:+20548	Msa1383740:CDS
AACTTCCTTGAGGTTTCATC+CGG	0.430850	tig0020612:+19303	Msa1383740:CDS
AAGAAATGTATCAAAAGCTT+TGG	0.451091	tig0020612:-20481	None:intergenic
AAGATCAAACTCATCAGCCT+GGG	0.518267	tig0020612:-19668	None:intergenic
AAGCATTATCAACAAGAGTG+CGG	0.686922	tig0020612:-19783	None:intergenic
AAGCTGGAGAGAGTTTCCCC+AGG	0.640812	tig0020612:+19651	Msa1383740:CDS
AATACTAAGAAGAAAGGAAG+AGG	0.556144	tig0020612:+19822	Msa1383740:CDS
AATCAACCAATTCCATCTCT+AGG	0.533477	tig0020612:+19568	Msa1383740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAGTGAAATAAGAAGCT+CGG	-	tig0020612:18690-18709	None:intergenic	30.0%
CTTGTGAGTAAGTAATAAGA+CGG	-	tig0020612:18961-18980	None:intergenic	30.0%
TGTTTCATCTAATTGTCTTC+CGG	+	tig0020612:19006-19025	Msa1383740:CDS	30.0%
GCAAGATCATTATGCATTAT+TGG	+	tig0020612:19222-19241	Msa1383740:CDS	30.0%
GTGATGATAAGTCTTCAATA+AGG	+	tig0020612:19590-19609	Msa1383740:CDS	30.0%
CCTTTCTTCTTAGTATTCTA+GGG	-	tig0020612:19819-19838	None:intergenic	30.0%
TCCTTTCTTCTTAGTATTCT+AGG	-	tig0020612:19820-19839	None:intergenic	30.0%
AATACTAAGAAGAAAGGAAG+AGG	+	tig0020612:19822-19841	Msa1383740:CDS	30.0%
GAAAAAGGAGTCCAAATATA+TGG	+	tig0020612:19864-19883	Msa1383740:CDS	30.0%
CAACTTCTTTGCCATATATT+TGG	-	tig0020612:19878-19897	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020612	gene	18481	20902	18481	ID=Msa1383740;Name=Msa1383740
tig0020612	mRNA	18481	20902	18481	ID=Msa1383740-mRNA-1;Parent=Msa1383740;Name=Msa1383740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|663
tig0020612	exon	18481	18487	18481	ID=Msa1383740-mRNA-1:exon:8755;Parent=Msa1383740-mRNA-1
tig0020612	exon	18769	18774	18769	ID=Msa1383740-mRNA-1:exon:8756;Parent=Msa1383740-mRNA-1
tig0020612	exon	18869	18874	18869	ID=Msa1383740-mRNA-1:exon:8757;Parent=Msa1383740-mRNA-1
tig0020612	exon	18930	20902	18930	ID=Msa1383740-mRNA-1:exon:8758;Parent=Msa1383740-mRNA-1
tig0020612	CDS	18481	18487	18481	ID=Msa1383740-mRNA-1:cds;Parent=Msa1383740-mRNA-1
tig0020612	CDS	18769	18774	18769	ID=Msa1383740-mRNA-1:cds;Parent=Msa1383740-mRNA-1
tig0020612	CDS	18869	18874	18869	ID=Msa1383740-mRNA-1:cds;Parent=Msa1383740-mRNA-1
tig0020612	CDS	18930	20902	18930	ID=Msa1383740-mRNA-1:cds;Parent=Msa1383740-mRNA-1

Gene Sequence

>Msa1383740

ATGTTTTTTTCAGGTTTGACCTCCATAATGGCTGTTCAAACAAAATACCGTCTTATTACTTACTCACAAGAGCTTGTAGATGGGCAGCCTATTTTTGTTTCATCTAATTGTCTTCCGGTTAAGGCGTTGAAATATGACCCGGCTGGTCACTCTTTTCATGCTGCTGCACTTAAACTTCTCGGTGTTACAAAAGAAGATAACAAAGATGCTGATAAGAAGAATGTGGTTGAAGATAAGGAACATGTTTATTTGCCTTCTGATTCTTACAGCAGCAAGAGCAAGAAGAAATCTGGTGACGGAGACAAGCAACAGCAAGATCATTATGCATTATTGGGTTTGAGCCATCTTAGATATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCATAAAACTTCCTTGAGGTTTCATCCGGACAAACAGGCTGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCGAAGGAGGCAAAGAAGATTGAAATAGATGTTCATTTTAAGGCAATCCAAGAGGCTTATGCAGTGTTGGTCGATCCCGTAAAAAGAAGAATTTATGATTCTACAGACGAGTTTGATGATGAGATTCCCACTGACTGTGATCCACAAGACTTCTACAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGACGGTGGTCGGTTAATCAACCAATTCCATCTCTAGGTGATGATAAGTCTTCAATAAGGGAAGTTGATAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCTGATGAGTTTGATCTTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAAAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTAAGAAGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAATATATGGCAAAGAAGTTGGAGGAGGAAGAAGCGGCCAGAATTGCTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGGTGAAAGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTATCTTGTCACAACACATACTTGATATTGCTGAAGACGATGTAGAAGAGCTTTGCATGTCATTTGATATCGAACAATTGAGGGGTTTGTGTGAGAAAATCGAAGGCAAAGAGGTGTTAGAGCAAGCAGAAGCTCTAAAAGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTATGTCAAGGCTAATGGAAGCAGTAGTTCTCTAGCAGGCTACACAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAGAGGAAACCTGCAGCACAATCAATTGCATCCCCATTGTCAACTAGAGAAGAATTGGAAGGGGTCTCAATACCAGCAACAACAACTGAAAATAGTGATGCAAAAACAACAACTACTATACCAACACCGACGATGACGACGACAACAATTCCAACACCGGTACCGACAGCAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGGCGTGGTCTGCAGTGCAGGAAAGAGCATTAGTTCAAGCTTTAAAAACCTTCCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACCGTGATCCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA

Protein sequence

>Msa1383740

MFFSGLTSIMAVQTKYRLITYSQELVDGQPIFVSSNCLPVKALKYDPAGHSFHAAALKLLGVTKEDNKDADKKNVVEDKEHVYLPSDSYSSKSKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKSSIREVDSFYNFWYSFKSWREFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKKLEEEEAARIAEEEKQRKAEEDKKAAEAALQQKKVKEKEKKLLRKERTRLRTLSRPILSQHILDIAEDDVEELCMSFDIEQLRGLCEKIEGKEVLEQAEALKDALSCKKNVVDEKSNQQNGYVKANGSSSSLAGYTEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTTENSDAKTTTTIPTPTMTTTTIPTPVPTATSSINSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKENFRNKKTAV*