AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352890 MtrunA17_Chr3g0109721 100.000 200 0 0 1 200 1 200 6.62e-151 416
Msa1352890 MtrunA17_Chr5g0433561 93.500 200 13 0 1 200 1 200 3.05e-143 397
Msa1352890 MtrunA17_Chr8g0390561 68.912 193 59 1 8 200 7 198 2.35e-98 283
Msa1352890 MtrunA17_Chr1g0199331 65.868 167 56 1 8 173 29 195 1.11e-79 236
Msa1352890 MtrunA17_Chr4g0055651 44.103 195 100 4 12 200 10 201 6.04e-52 166
Msa1352890 MtrunA17_Chr4g0032201 42.781 187 99 2 12 193 14 197 1.21e-49 160
Msa1352890 MtrunA17_Chr4g0040781 39.806 206 103 3 12 200 15 216 1.43e-49 160
Msa1352890 MtrunA17_Chr8g0381841 47.436 156 82 0 12 167 19 174 2.01e-49 160
Msa1352890 MtrunA17_Chr6g0458081 43.750 160 90 0 12 171 8 167 3.47e-49 159
Msa1352890 MtrunA17_Chr3g0123821 44.509 173 90 1 1 167 1 173 4.07e-49 159
Msa1352890 MtrunA17_Chr8g0349681 39.698 199 110 1 12 200 386 584 5.07e-49 167
Msa1352890 MtrunA17_Chr8g0349681 43.210 162 92 0 12 173 177 338 5.92e-45 157
Msa1352890 MtrunA17_Chr8g0349681 43.791 153 86 0 12 164 15 167 4.64e-43 151
Msa1352890 MtrunA17_Chr2g0315551 39.806 206 103 3 12 200 15 216 8.75e-49 158
Msa1352890 MtrunA17_Chr3g0112681 41.089 202 106 3 12 200 14 215 1.15e-48 157
Msa1352890 MtrunA17_Chr2g0319951 45.679 162 88 0 12 173 15 176 1.39e-48 157
Msa1352890 MtrunA17_Chr2g0283131 39.320 206 104 3 12 200 15 216 1.40e-48 157
Msa1352890 MtrunA17_Chr8g0349711 43.210 162 92 0 12 173 8 169 1.40e-48 157
Msa1352890 MtrunA17_Chr4g0046261 39.109 202 110 2 12 200 15 216 1.44e-48 157
Msa1352890 MtrunA17_Chr2g0276941 48.366 153 79 0 12 164 17 169 2.27e-48 157
Msa1352890 MtrunA17_Chr3g0123971 43.478 161 91 0 12 172 11 171 2.80e-48 156
Msa1352890 MtrunA17_Chr8g0382221 43.478 161 91 0 12 172 11 171 3.91e-48 156
Msa1352890 MtrunA17_Chr6g0482721 47.500 160 84 0 12 171 14 173 9.15e-48 155
Msa1352890 MtrunA17_Chr7g0250531 40.104 192 112 1 12 200 10 201 1.68e-47 154
Msa1352890 MtrunA17_Chr1g0189361 39.423 208 107 2 12 200 16 223 4.37e-47 154
Msa1352890 MtrunA17_Chr7g0275991 42.945 163 93 0 12 174 22 184 4.44e-47 154
Msa1352890 MtrunA17_Chr2g0290891 43.312 157 89 0 12 168 8 164 7.71e-47 153
Msa1352890 MtrunA17_Chr5g0400131 40.341 176 105 0 12 187 11 186 8.08e-47 152
Msa1352890 MtrunA17_Chr8g0335471 41.026 195 107 3 12 200 10 202 1.87e-46 152
Msa1352890 MtrunA17_Chr1g0182301 38.693 199 110 4 12 199 17 214 3.77e-46 151
Msa1352890 MtrunA17_Chr8g0351861 46.405 153 82 0 12 164 18 170 5.76e-46 151
Msa1352890 MtrunA17_Chr4g0055081 41.615 161 94 0 12 172 11 171 6.65e-46 150
Msa1352890 MtrunA17_Chr8g0346421 41.899 179 99 1 12 185 28 206 7.21e-46 151
Msa1352890 MtrunA17_Chr1g0182321 38.693 199 110 4 12 199 17 214 7.38e-46 150
Msa1352890 MtrunA17_Chr7g0231131 38.424 203 110 2 12 199 17 219 8.21e-46 150
Msa1352890 MtrunA17_Chr7g0234201 40.000 205 103 4 12 200 15 215 1.23e-45 150
Msa1352890 MtrunA17_Chr1g0174281 43.827 162 91 0 12 173 17 178 4.38e-45 149
Msa1352890 MtrunA17_Chr2g0325091 43.125 160 91 0 12 171 13 172 5.21e-45 148
Msa1352890 MtrunA17_Chr1g0212521 38.889 198 111 4 12 199 17 214 1.66e-44 147
Msa1352890 MtrunA17_Chr4g0030911 38.071 197 113 3 12 199 17 213 4.41e-44 146
Msa1352890 MtrunA17_Chr7g0214241 41.875 160 93 0 12 171 17 176 6.78e-44 145
Msa1352890 MtrunA17_Chr2g0276931 40.936 171 100 1 12 182 11 180 3.53e-43 143
Msa1352890 MtrunA17_Chr7g0263071 41.104 163 95 1 12 173 17 179 1.57e-42 142
Msa1352890 MtrunA17_Chr8g0392931 46.795 156 83 0 12 167 16 171 5.44e-40 135
Msa1352890 MtrunA17_Chr2g0327911 34.184 196 121 4 12 199 17 212 1.85e-39 134
Msa1352890 MtrunA17_Chr8g0383261 36.598 194 116 4 12 198 14 207 6.23e-38 130
Msa1352890 MtrunA17_Chr8g0384311 36.923 195 115 5 12 199 15 208 1.03e-37 129
Msa1352890 MtrunA17_Chr7g0265001 36.453 203 119 4 7 200 13 214 5.53e-37 128
Msa1352890 MtrunA17_Chr1g0197331 34.928 209 125 6 2 200 5 212 1.37e-35 124
Msa1352890 MtrunA17_Chr1g0159481 36.041 197 117 6 12 200 19 214 1.60e-35 124
Msa1352890 MtrunA17_Chr1g0180291 36.318 201 117 5 8 199 12 210 1.79e-35 124
Msa1352890 MtrunA17_Chr3g0130271 36.224 196 116 6 12 199 14 208 6.61e-35 122
Msa1352890 MtrunA17_Chr6g0466301 39.394 165 93 3 12 169 10 174 9.75e-35 122
Msa1352890 MtrunA17_Chr6g0465491 39.394 165 93 3 12 169 10 174 9.75e-35 122
Msa1352890 MtrunA17_Chr4g0034871 38.788 165 94 3 12 169 10 174 3.25e-34 120
Msa1352890 MtrunA17_Chr1g0201121 39.394 165 93 3 12 169 10 174 3.41e-33 118
Msa1352890 MtrunA17_Chr2g0331691 34.595 185 114 3 1 178 1 185 2.16e-32 115
Msa1352890 MtrunA17_Chr4g0004661 35.632 174 105 3 12 178 66 239 4.59e-31 114
Msa1352890 MtrunA17_Chr3g0138101 33.526 173 109 4 12 181 15 184 6.15e-26 99.8
Msa1352890 MtrunA17_Chr3g0138121 33.526 173 109 4 12 181 15 184 6.28e-26 99.8
Msa1352890 MtrunA17_Chr3g0138111 33.526 173 109 4 12 181 15 184 6.56e-26 99.8
Msa1352890 MtrunA17_Chr2g0331841 69.492 59 18 0 78 136 1 59 8.25e-24 90.5
Msa1352890 MtrunA17_Chr8g0371501 33.939 165 95 4 12 164 8 170 3.68e-21 86.7
Msa1352890 MtrunA17_Chr6g0465471 31.875 160 102 3 27 179 7 166 6.30e-21 86.3
Msa1352890 MtrunA17_Chr6g0466161 32.667 150 94 3 27 169 7 156 8.19e-21 85.9
Msa1352890 MtrunA17_Chr5g0405791 33.333 165 96 4 12 164 8 170 1.81e-20 84.7
Msa1352890 MtrunA17_Chr3g0117931 32.335 167 95 6 12 164 10 172 2.65e-20 84.7
Msa1352890 MtrunA17_Chr4g0046211 34.426 122 77 3 12 132 8 127 4.75e-19 79.7
Msa1352890 MtrunA17_Chr6g0486041 31.138 167 97 5 12 164 8 170 9.55e-19 80.5
Msa1352890 MtrunA17_Chr4g0037021 30.909 165 100 4 12 164 8 170 1.05e-18 80.1
Msa1352890 MtrunA17_Chr2g0325101 30.303 165 101 4 12 164 8 170 1.38e-18 79.7
Msa1352890 MtrunA17_Chr6g0466431 37.113 97 52 1 12 108 10 97 2.31e-17 73.9
Msa1352890 MtrunA17_Chr6g0465611 37.113 97 52 1 12 108 10 97 2.31e-17 73.9
Msa1352890 MtrunA17_Chr5g0443631 30.588 170 108 4 9 171 103 269 1.08e-15 73.6
Msa1352890 MtrunA17_Chr2g0331831 47.692 65 33 1 136 200 2 65 1.42e-15 68.2
Msa1352890 MtrunA17_Chr4g0024431 30.539 167 106 4 12 171 93 256 2.49e-14 69.7
Msa1352890 MtrunA17_Chr1g0178291 28.144 167 110 4 13 176 431 590 6.32e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352890 AT5G45130.1 80.000 200 40 0 1 200 1 200 1.11e-120 340
Msa1352890 AT4G19640.1 79.000 200 42 0 1 200 1 200 9.35e-120 338
Msa1352890 AT5G45130.2 81.283 187 35 0 14 200 22 208 5.14e-114 323
Msa1352890 AT4G19640.2 85.000 140 21 0 1 140 1 140 2.19e-84 246
Msa1352890 AT4G19640.3 83.099 142 24 0 1 142 1 142 3.59e-84 247
Msa1352890 AT3G54840.1 63.158 171 62 1 8 177 31 201 2.13e-78 233
Msa1352890 AT3G54840.3 63.253 166 60 1 13 177 2 167 2.90e-76 226
Msa1352890 AT3G54840.2 63.291 158 57 1 8 164 31 188 1.17e-71 216
Msa1352890 AT4G18800.1 40.201 199 109 2 12 200 15 213 1.66e-50 162
Msa1352890 AT4G39990.1 39.320 206 106 4 12 200 19 222 2.48e-50 162
Msa1352890 AT5G45750.1 39.801 201 109 2 12 200 15 215 4.06e-50 162
Msa1352890 AT1G16920.1 47.531 162 85 0 12 173 15 176 9.16e-50 161
Msa1352890 AT3G07410.1 42.365 203 103 3 12 200 14 216 1.26e-49 160
Msa1352890 AT1G06400.1 40.796 201 107 2 12 200 15 215 2.33e-49 160
Msa1352890 AT1G07410.1 43.316 187 97 2 12 193 14 196 2.47e-49 160
Msa1352890 AT5G60860.1 38.614 202 111 2 12 200 15 216 7.58e-49 159
Msa1352890 AT1G09630.1 46.914 162 86 0 12 173 14 175 1.10e-48 158
Msa1352890 AT2G44610.1 41.304 184 108 0 12 195 11 194 2.05e-48 157
Msa1352890 AT4G18430.1 38.614 202 111 2 12 200 15 216 2.10e-48 157
Msa1352890 AT4G17160.1 44.586 157 87 0 12 168 8 164 2.23e-48 157
Msa1352890 AT1G28550.1 43.827 162 91 0 12 173 15 176 3.52e-48 157
Msa1352890 AT3G15060.1 44.444 162 90 0 12 173 15 176 4.35e-48 157
Msa1352890 AT1G02130.1 41.538 195 106 3 12 200 10 202 5.47e-48 156
Msa1352890 AT2G33870.1 44.444 162 90 0 12 173 15 176 1.01e-47 155
Msa1352890 AT4G35860.1 43.125 160 91 0 12 171 8 167 2.00e-47 155
Msa1352890 AT2G43130.1 39.500 200 110 2 12 200 14 213 3.72e-47 154
Msa1352890 AT2G22290.1 38.265 196 114 2 12 200 11 206 3.81e-47 154
Msa1352890 AT5G10260.1 42.857 161 92 0 12 172 11 171 4.39e-47 154
Msa1352890 AT5G65270.1 45.752 153 83 0 12 164 19 171 7.04e-47 154
Msa1352890 AT5G47520.1 40.291 206 105 4 12 200 16 220 8.26e-47 153
Msa1352890 AT3G46830.1 40.291 206 103 4 12 200 14 216 9.76e-47 153
Msa1352890 AT3G46830.2 40.291 206 103 4 12 200 14 216 9.76e-47 153
Msa1352890 AT5G59150.1 46.405 153 82 0 12 164 14 166 2.48e-46 152
Msa1352890 AT3G12160.1 45.062 162 89 0 12 173 17 178 3.44e-46 152
Msa1352890 AT4G17170.1 42.675 157 90 0 12 168 8 164 5.13e-46 151
Msa1352890 AT5G47200.1 39.583 192 113 1 12 200 10 201 8.25e-46 150
Msa1352890 AT4G17530.1 39.691 194 110 3 12 200 10 201 9.61e-46 150
Msa1352890 AT4G39890.1 41.975 162 93 1 12 172 11 172 1.65e-45 150
Msa1352890 AT5G47960.1 42.857 168 96 0 12 179 17 184 2.38e-45 150
Msa1352890 AT5G64990.1 43.750 160 90 0 12 171 9 168 1.01e-44 147
Msa1352890 AT3G11730.1 37.113 194 115 1 12 198 10 203 2.65e-44 146
Msa1352890 AT5G59840.1 38.384 198 112 4 12 199 17 214 3.88e-44 146
Msa1352890 AT1G05810.1 38.424 203 111 3 12 200 14 216 9.75e-44 145
Msa1352890 AT1G73640.1 44.375 160 89 0 12 171 15 174 1.65e-43 145
Msa1352890 AT1G05810.2 38.424 203 111 3 12 200 60 262 2.43e-43 146
Msa1352890 AT3G46060.2 37.374 198 114 4 12 199 17 214 2.60e-43 144
Msa1352890 AT3G46060.3 37.374 198 114 4 12 199 17 214 2.60e-43 144
Msa1352890 AT3G46060.1 37.374 198 114 4 12 199 17 214 2.60e-43 144
Msa1352890 AT1G18200.1 43.750 160 90 0 12 171 15 174 6.02e-43 144
Msa1352890 AT3G53610.2 38.384 198 112 4 12 199 17 214 2.22e-42 142
Msa1352890 AT3G53610.3 38.384 198 112 4 12 199 17 214 2.22e-42 142
Msa1352890 AT3G53610.1 38.384 198 112 4 12 199 17 214 2.22e-42 142
Msa1352890 AT2G31680.1 36.765 204 114 3 12 200 14 217 2.33e-42 142
Msa1352890 AT5G64990.2 41.916 167 90 1 12 171 9 175 9.57e-42 140
Msa1352890 AT1G01200.1 41.489 188 103 3 12 194 30 215 2.79e-41 140
Msa1352890 AT5G03520.1 39.394 198 111 4 12 200 17 214 4.99e-41 139
Msa1352890 AT3G09900.1 37.500 200 114 3 12 200 17 216 3.13e-40 136
Msa1352890 AT4G35860.2 45.000 120 66 0 52 171 2 121 2.23e-36 125
Msa1352890 AT1G22740.1 40.000 165 92 3 12 169 10 174 1.35e-35 124
Msa1352890 AT1G43890.3 40.123 162 94 3 12 171 15 175 3.10e-35 124
Msa1352890 AT1G43890.1 40.123 162 94 3 12 171 15 175 3.10e-35 124
Msa1352890 AT1G43890.2 40.123 162 94 3 12 171 15 175 3.10e-35 124
Msa1352890 AT5G03530.2 36.634 202 117 6 8 200 11 210 2.82e-34 121
Msa1352890 AT5G03530.1 36.634 202 117 6 8 200 11 210 2.82e-34 121
Msa1352890 AT1G52280.1 35.795 176 106 3 12 180 10 185 6.07e-34 120
Msa1352890 AT3G18820.1 38.788 165 94 3 12 169 10 174 1.05e-33 119
Msa1352890 AT3G16100.1 36.207 174 104 3 12 178 10 183 6.46e-33 117
Msa1352890 AT2G21880.1 37.195 164 96 3 12 168 11 174 7.62e-33 117
Msa1352890 AT5G59150.2 46.903 113 60 0 52 164 3 115 1.21e-32 115
Msa1352890 AT1G49300.2 37.805 164 95 3 12 168 10 173 2.42e-32 116
Msa1352890 AT1G49300.1 37.805 164 95 3 12 168 10 173 2.42e-32 116
Msa1352890 AT5G03520.2 37.423 163 93 4 47 200 42 204 4.47e-32 115
Msa1352890 AT5G39620.1 36.145 166 99 3 12 170 7 172 1.05e-31 114
Msa1352890 AT4G09720.1 38.182 165 95 3 12 169 10 174 3.58e-31 113
Msa1352890 AT3G09910.3 34.872 195 124 3 8 200 11 204 5.91e-30 110
Msa1352890 AT3G09910.1 34.872 195 124 3 8 200 11 204 5.91e-30 110
Msa1352890 AT3G09910.2 34.872 195 124 3 8 200 11 204 5.91e-30 110
Msa1352890 AT4G09720.4 37.647 170 94 4 12 169 10 179 3.72e-29 108
Msa1352890 AT3G09910.5 38.095 168 101 3 8 173 11 177 3.44e-28 105
Msa1352890 AT3G09910.4 38.095 168 101 3 8 173 11 177 3.44e-28 105
Msa1352890 AT4G09720.3 35.795 176 95 4 12 169 10 185 5.69e-28 105
Msa1352890 AT5G55080.1 31.875 160 106 3 12 171 15 171 1.52e-26 101
Msa1352890 AT5G55190.1 34.375 160 102 3 12 171 15 171 1.54e-25 99.0
Msa1352890 AT5G20020.1 34.375 160 102 3 12 171 15 171 1.62e-25 99.0
Msa1352890 AT5G20010.1 34.375 160 102 3 12 171 15 171 1.73e-25 99.0
Msa1352890 AT2G21880.4 35.374 147 88 3 29 168 3 149 1.87e-25 97.8
Msa1352890 AT2G21880.3 35.374 147 88 3 29 168 3 149 1.87e-25 97.8
Msa1352890 AT4G09720.6 37.956 137 78 3 40 169 4 140 1.33e-23 92.8
Msa1352890 AT4G09720.5 37.956 137 78 3 40 169 4 140 1.33e-23 92.8
Msa1352890 AT4G09720.2 37.956 137 78 3 40 169 4 140 1.33e-23 92.8
Msa1352890 AT2G21880.2 32.317 164 96 4 12 168 11 166 4.98e-23 92.0
Msa1352890 AT2G44690.1 34.706 170 97 5 12 169 20 187 1.39e-21 88.2
Msa1352890 AT4G35950.1 34.545 165 94 5 12 164 8 170 1.22e-20 85.5
Msa1352890 AT3G51300.1 32.530 166 98 4 11 164 7 170 1.24e-20 85.5
Msa1352890 AT2G17800.2 33.333 165 96 4 12 164 8 170 2.74e-20 84.7
Msa1352890 AT2G17800.1 33.333 165 96 4 12 164 8 170 2.74e-20 84.7
Msa1352890 AT4G28950.1 32.121 165 96 5 12 164 8 168 3.74e-20 84.7
Msa1352890 AT3G48040.1 30.539 167 98 5 12 164 10 172 3.25e-19 82.0
Msa1352890 AT5G46025.1 45.349 86 46 1 80 164 14 99 3.55e-19 79.3
Msa1352890 AT5G62880.1 32.335 167 95 6 12 164 10 172 4.68e-19 81.6
Msa1352890 AT4G35020.1 32.727 165 97 5 12 164 8 170 5.26e-19 81.3
Msa1352890 AT4G35020.2 32.727 165 97 5 12 164 8 170 5.26e-19 81.3
Msa1352890 AT4G35020.3 32.727 165 97 5 12 164 8 170 5.26e-19 81.3
Msa1352890 AT5G45970.1 30.909 165 100 4 12 164 8 170 1.96e-18 79.7
Msa1352890 AT1G75840.1 31.515 165 99 5 12 164 8 170 1.99e-18 79.7
Msa1352890 AT1G20090.1 31.515 165 99 5 12 164 7 169 2.91e-18 79.3
Msa1352890 AT3G48040.2 33.333 129 79 4 12 137 10 134 3.78e-17 75.9
Msa1352890 AT5G62880.2 33.333 129 79 4 12 137 10 134 4.47e-17 75.9
Msa1352890 AT3G51290.2 34.884 129 71 3 48 164 644 771 6.00e-16 75.9
Msa1352890 AT4G35020.4 33.621 116 70 4 12 124 8 119 4.59e-14 67.0
Msa1352890 AT4G35020.5 33.621 116 70 4 12 124 8 119 4.59e-14 67.0
Msa1352890 AT5G54840.1 30.952 168 104 6 12 171 103 266 1.15e-13 68.2
Msa1352890 AT3G21700.3 28.070 171 112 5 9 171 105 272 4.45e-12 63.9

Find 67 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCCCTTGGATGCATATT+TGG 0.119558 tig0012925:-15772 Msa1352890:three_prime_UTR
AAGATTTAAGCTTTGAAATT+AGG 0.124999 tig0012925:+20596 None:intergenic
CAAAACAATACAAATTAAAA+AGG 0.201113 tig0012925:+15896 None:intergenic
TCAGGTTCTTCTTGGTGATA+TGG 0.214614 tig0012925:-20403 Msa1352890:intron
GGGTCAATTTCTCGAATTTC+AGG 0.243303 tig0012925:-20343 Msa1352890:intron
AGATTTAAGCTTTGAAATTA+GGG 0.259036 tig0012925:+20597 None:intergenic
CAACAATCTCAATGCTAAAT+TGG 0.259093 tig0012925:-20500 Msa1352890:intron
CAACGGTTAAATTTGAGATT+TGG 0.280373 tig0012925:-19008 Msa1352890:CDS
GCAAGAGCCATGACCATGTT+TGG 0.310928 tig0012925:+17527 None:intergenic
AACGGTTAAATTTGAGATTT+GGG 0.317804 tig0012925:-19007 Msa1352890:CDS
CTTGGGTTATCACTGTTATA+TGG 0.319977 tig0012925:-15848 Msa1352890:three_prime_UTR
ATTAACATTGGCTGCAGATT+TGG 0.324617 tig0012925:+16897 None:intergenic
AGTGTTTAAGCTGTATTTAC+CGG 0.350418 tig0012925:-15924 Msa1352890:three_prime_UTR
TATCCCTTGGATGCATATTT+GGG 0.359069 tig0012925:-15771 Msa1352890:three_prime_UTR
CGTGTATATGCCGAGGAAAA+TGG 0.363462 tig0012925:-16943 Msa1352890:CDS
AACATGGTCATGGCTCTTGC+TGG 0.370648 tig0012925:-17524 Msa1352890:CDS
GTGGTGCAGGAATCAACAAT+AGG 0.376165 tig0012925:-19069 Msa1352890:intron
CGTAGCCATGAGAAGAGAAT+TGG 0.383455 tig0012925:+20531 None:intergenic
CAGGTTCTTCTTGGTGATAT+GGG 0.397120 tig0012925:-20402 Msa1352890:CDS
ATAGACCTGCCGAAGGATCT+AGG 0.399113 tig0012925:-15967 Msa1352890:CDS
GAATATCTAAATTATGTTCC+CGG 0.401727 tig0012925:+15677 None:intergenic
CAAGAGCCATGACCATGTTT+GGG 0.423378 tig0012925:+17528 None:intergenic
TTTATGTACTGCACAGAACT+TGG 0.427414 tig0012925:-15866 Msa1352890:three_prime_UTR
TGGTGCAGGAATCAACAATA+GGG 0.434766 tig0012925:-19068 Msa1352890:intron
CTTCTTGGTGATATGGGTGC+TGG 0.450654 tig0012925:-20396 Msa1352890:CDS
CGATGCAGCCCTAGATCCTT+CGG 0.472784 tig0012925:+15958 None:intergenic
ATTTGCCACACAGAACTTGT+TGG 0.477154 tig0012925:-15802 Msa1352890:three_prime_UTR
CAGCCAGCTCAAAACCCAGC+AGG 0.480898 tig0012925:-16004 Msa1352890:CDS
GATCGGAAGTGAAGAGAGAA+AGG 0.481354 tig0012925:+20557 None:intergenic
TCAACAAGAACCATCCCTGC+TGG 0.485332 tig0012925:+15989 None:intergenic
ATAAAATACATCATTAACAT+TGG 0.495428 tig0012925:+16885 None:intergenic
TGCTGGCAACAAATCTGACT+TGG 0.506651 tig0012925:-17507 Msa1352890:CDS
AGCTCAAAACCCAGCAGGGA+TGG 0.507722 tig0012925:-15999 Msa1352890:CDS
AATATCTAAATTATGTTCCC+GGG 0.515074 tig0012925:+15678 None:intergenic
CTATAGTCTAAAATATCTGT+TGG 0.524888 tig0012925:-15734 Msa1352890:three_prime_UTR
AGCTGCGCCTCTGTAATACA+TGG 0.526016 tig0012925:+18948 None:intergenic
TAGACTATAGATTTATAGCA+AGG 0.538228 tig0012925:+15747 None:intergenic
TTTGAGATTTGGGACACAGC+AGG 0.542819 tig0012925:-18997 Msa1352890:CDS
AAATTGCATTCATATACTGT+TGG 0.548433 tig0012925:+15821 None:intergenic
TAGACCTGCCGAAGGATCTA+GGG 0.549720 tig0012925:-15966 Msa1352890:CDS
TCGATCCAATTCTCTTCTCA+TGG 0.551685 tig0012925:-20536 Msa1352890:exon
GAGAAGAGAATTGGATCGAT+CGG 0.560023 tig0012925:+20540 None:intergenic
TTATGTACTGCACAGAACTT+GGG 0.560984 tig0012925:-15865 Msa1352890:three_prime_UTR
CAACAAGAACCATCCCTGCT+GGG 0.567898 tig0012925:+15990 None:intergenic
AGGACCCAAATATGCATCCA+AGG 0.569874 tig0012925:+15767 None:intergenic
CCTTCTCACGAGCTAAGAAG+TGG 0.589371 tig0012925:-18260 Msa1352890:CDS
ACAAGAGAGATACCATAGCT+TGG 0.597101 tig0012925:-18974 Msa1352890:CDS
TCTCTTCTCATGGCTACGAT+CGG 0.597849 tig0012925:-20526 Msa1352890:exon
GCAGCCCTAGATCCTTCGGC+AGG 0.598606 tig0012925:+15962 None:intergenic
ATTGGCTGCAGATTTGGCAG+AGG 0.603013 tig0012925:+16903 None:intergenic
AATACATGGGAGCCAAGCTA+TGG 0.603780 tig0012925:+18962 None:intergenic
GCTTGCAGGCAACCCAAACA+TGG 0.608135 tig0012925:-17540 Msa1352890:intron
GTCCAAGAGCTTCAAAAGCA+AGG 0.610196 tig0012925:-18237 Msa1352890:intron
GGACCCAAATATGCATCCAA+GGG 0.612652 tig0012925:+15768 None:intergenic
AACAGCTAAAAGATTACCAA+GGG 0.615040 tig0012925:-16029 Msa1352890:intron
CCACTTCTTAGCTCGTGAGA+AGG 0.618362 tig0012925:+18260 None:intergenic
AGCCAGCTCAAAACCCAGCA+GGG 0.622894 tig0012925:-16003 Msa1352890:CDS
AGGCAACCCAAACATGGTCA+TGG 0.632739 tig0012925:-17534 Msa1352890:CDS
AAACAGCTAAAAGATTACCA+AGG 0.641621 tig0012925:-16030 Msa1352890:intron
CTTGTTGATAGACCTGCCGA+AGG 0.644031 tig0012925:-15974 Msa1352890:CDS
GGAAGCTCGTGTATATGCCG+AGG 0.658380 tig0012925:-16950 Msa1352890:CDS
GCTGCGCCTCTGTAATACAT+GGG 0.659907 tig0012925:+18949 None:intergenic
ATTAGCAGTAAATGACGCAA+CGG 0.668502 tig0012925:-19025 Msa1352890:CDS
GGTGCAGGAATCAACAATAG+GGG 0.672375 tig0012925:-19067 Msa1352890:intron
CTTCTCACGAGCTAAGAAGT+GGG 0.674595 tig0012925:-18259 Msa1352890:CDS
TTGAACCAACAAGTTCTGTG+TGG 0.689121 tig0012925:+15797 None:intergenic
TTGGCTCCCATGTATTACAG+AGG 0.724540 tig0012925:-18955 Msa1352890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATACAAATTAAAAA+GGG + tig0012925:20540-20559 None:intergenic 10.0%
!! ATCTATAATATTTAACATGA+TGG - tig0012925:17654-17673 Msa1352890:intron 15.0%
!!! TAACATATCAATTTTAAAAC+AGG + tig0012925:17710-17729 None:intergenic 15.0%
!! AATAACTTATTAATCATTTG+AGG - tig0012925:18426-18445 Msa1352890:intron 15.0%
!!! GATTATTGATTATAGTATAT+TGG + tig0012925:19415-19434 None:intergenic 15.0%
!! ATAAAATACATCATTAACAT+TGG + tig0012925:19552-19571 None:intergenic 15.0%
!!! AATGATGTATTTTATGAAAT+AGG - tig0012925:19557-19576 Msa1352890:intron 15.0%
!! CAAAACAATACAAATTAAAA+AGG + tig0012925:20541-20560 None:intergenic 15.0%
!!! AGATTTAAGCTTTGAAATTA+GGG + tig0012925:15840-15859 None:intergenic 20.0%
!!! AAGATTTAAGCTTTGAAATT+AGG + tig0012925:15841-15860 None:intergenic 20.0%
!! GGAATTAAAAAAAAAGATGA+AGG + tig0012925:15983-16002 None:intergenic 20.0%
!! GATTAAAAAACAAAGTTAGA+GGG + tig0012925:16013-16032 None:intergenic 20.0%
!! TGATTAAAAAACAAAGTTAG+AGG + tig0012925:16014-16033 None:intergenic 20.0%
!!! TCTAACTTTGTTTTTTAATC+AGG - tig0012925:16013-16032 Msa1352890:CDS 20.0%
!!! TCATCAATTTTGATTTGATT+AGG - tig0012925:16120-16139 Msa1352890:intron 20.0%
!!! AAGATTTTTCAATTAGAAGT+TGG - tig0012925:16221-16240 Msa1352890:intron 20.0%
!!! AGATTTTTCAATTAGAAGTT+GGG - tig0012925:16222-16241 Msa1352890:intron 20.0%
!!! ACTAATTTTCAAAGTTATTG+AGG - tig0012925:16290-16309 Msa1352890:intron 20.0%
!! TACAATAAATAATTTCGTGA+TGG - tig0012925:16730-16749 Msa1352890:intron 20.0%
!! AATTGAATGTAAATTTGTGT+AGG + tig0012925:17058-17077 None:intergenic 20.0%
!!! GTAAGTATAAGTTAGAATTT+TGG - tig0012925:17152-17171 Msa1352890:intron 20.0%
!!! ATTTTGTTCACAAGTTTATA+TGG - tig0012925:17336-17355 Msa1352890:intron 20.0%
!! TCAAATAATAAGTATCATTC+TGG + tig0012925:17850-17869 None:intergenic 20.0%
!!! AATTTTGTACCAATTATAGT+TGG + tig0012925:17959-17978 None:intergenic 20.0%
!! ACTATAATTGGTACAAAATT+TGG - tig0012925:17959-17978 Msa1352890:intron 20.0%
!! TAGAATTGATATATTGCAAA+AGG - tig0012925:18277-18296 Msa1352890:intron 20.0%
!!! TGTTTTACTAGATTCAATTT+TGG - tig0012925:18403-18422 Msa1352890:intron 20.0%
!! ATTCTTAATCAACATACAAT+AGG - tig0012925:18706-18725 Msa1352890:intron 20.0%
!! CAGATTAAAGCATATATAAT+AGG + tig0012925:19593-19612 None:intergenic 20.0%
!!! AAATGGTCTTATTTTATTCT+TGG - tig0012925:19617-19636 Msa1352890:intron 20.0%
!!! CTAAACTTTCCTTTTTATAA+GGG + tig0012925:19649-19668 None:intergenic 20.0%
!! CTTATAAAAAGGAAAGTTTA+GGG - tig0012925:19648-19667 Msa1352890:intron 20.0%
!! TTATAAAAAGGAAAGTTTAG+GGG - tig0012925:19649-19668 Msa1352890:intron 20.0%
!! TTTATCAAATCTTCTCTAAT+TGG - tig0012925:19794-19813 Msa1352890:intron 20.0%
!! CATGAAATTTAACAGAAATT+CGG + tig0012925:20266-20285 None:intergenic 20.0%
!! ATCATAAAATGTAGATCAAT+TGG + tig0012925:20303-20322 None:intergenic 20.0%
!!! TTAATTTGTATTGTTTTGAG+TGG - tig0012925:20543-20562 Msa1352890:five_prime_UTR 20.0%
!!! TTTTTTAATCAGGTTCTTCT+TGG - tig0012925:16023-16042 Msa1352890:CDS 25.0%
!!! TCTTGTTTTAAGATTTGTCA+AGG - tig0012925:16070-16089 Msa1352890:intron 25.0%
!!! CTTGTTTTAAGATTTGTCAA+GGG - tig0012925:16071-16090 Msa1352890:intron 25.0%
! TACAATAAATAACTTCGTGA+TGG - tig0012925:16546-16565 Msa1352890:intron 25.0%
! AAATAATTTCGTGATGGTTA+TGG - tig0012925:16736-16755 Msa1352890:intron 25.0%
! CCACTAATAATGTAAGAAAA+TGG + tig0012925:16917-16936 None:intergenic 25.0%
!! CCATTTTCTTACATTATTAG+TGG - tig0012925:16914-16933 Msa1352890:CDS 25.0%
!!! AGCTTTAAATAATTGTAGTC+TGG - tig0012925:17175-17194 Msa1352890:intron 25.0%
! TTTAAATAATTGTAGTCTGG+TGG - tig0012925:17178-17197 Msa1352890:intron 25.0%
! TTAAATAATTGTAGTCTGGT+GGG - tig0012925:17179-17198 Msa1352890:intron 25.0%
! ATTATGTTAATGATGCTTCT+GGG - tig0012925:17249-17268 Msa1352890:intron 25.0%
!! AACGGTTAAATTTGAGATTT+GGG - tig0012925:17427-17446 Msa1352890:intron 25.0%
! CAAAATTACAAGTCAAAAAC+TGG + tig0012925:17602-17621 None:intergenic 25.0%
! TGCGAAGTATAACTTAAAAA+TGG - tig0012925:17769-17788 Msa1352890:intron 25.0%
! TTCATACTTATTAAACTTCC+AGG + tig0012925:17818-17837 None:intergenic 25.0%
! ATATTATCAGCTCTTTATCA+GGG - tig0012925:17874-17893 Msa1352890:intron 25.0%
!! AATTGTAATGAGGATTTTTC+TGG + tig0012925:17914-17933 None:intergenic 25.0%
! TATTCGTCTAATTTCTCAAT+AGG - tig0012925:18113-18132 Msa1352890:intron 25.0%
! ATTCGTCTAATTTCTCAATA+GGG - tig0012925:18114-18133 Msa1352890:intron 25.0%
!!! AAAGCAAGGTATTAACTTTT+TGG - tig0012925:18211-18230 Msa1352890:intron 25.0%
! AAACATAAAAGATAACACGA+GGG + tig0012925:18388-18407 None:intergenic 25.0%
! AAAACATAAAAGATAACACG+AGG + tig0012925:18389-18408 None:intergenic 25.0%
!! TGTTTTATAATAGAACAGCA+TGG - tig0012925:18463-18482 Msa1352890:intron 25.0%
! CATGGTATAAAAAGCAATAT+TGG + tig0012925:18996-19015 None:intergenic 25.0%
! GTCAAAATTGAAGTTTATGA+TGG + tig0012925:19343-19362 None:intergenic 25.0%
!!! TAATCAATAATCACTTTTCC+TGG - tig0012925:19423-19442 Msa1352890:intron 25.0%
!! CCTAAACTTTCCTTTTTATA+AGG + tig0012925:19650-19669 None:intergenic 25.0%
! CCTTATAAAAAGGAAAGTTT+AGG - tig0012925:19647-19666 Msa1352890:intron 25.0%
! AGACTTTATGAATTATGAGA+AGG + tig0012925:19855-19874 None:intergenic 25.0%
! TTCATAAAGTCTTCTCTAAT+TGG - tig0012925:19863-19882 Msa1352890:intron 25.0%
!! CAAAAAGGGTACATATAATA+TGG + tig0012925:19957-19976 None:intergenic 25.0%
!! CATATTATATGTACCCTTTT+TGG - tig0012925:19955-19974 Msa1352890:intron 25.0%
! AACATTAAAGTGACCAAAAA+GGG + tig0012925:19971-19990 None:intergenic 25.0%
! AAAGTGTAATAAGGACAAAA+GGG + tig0012925:20006-20025 None:intergenic 25.0%
! TAAAGTGTAATAAGGACAAA+AGG + tig0012925:20007-20026 None:intergenic 25.0%
! TGTTGCAATAAAGTGTAATA+AGG + tig0012925:20015-20034 None:intergenic 25.0%
! CCTATGAAAAAACAGAAATT+AGG + tig0012925:20128-20147 None:intergenic 25.0%
!!! CCTAATTTCTGTTTTTTCAT+AGG - tig0012925:20125-20144 Msa1352890:intron 25.0%
! TAATCAAAGTTAGCAGTTTA+TGG + tig0012925:20357-20376 None:intergenic 25.0%
! CAATACAAATTAAAAAGGGA+AGG + tig0012925:20536-20555 None:intergenic 25.0%
! AAATTGCATTCATATACTGT+TGG + tig0012925:20616-20635 None:intergenic 25.0%
! TAGACTATAGATTTATAGCA+AGG + tig0012925:20690-20709 None:intergenic 25.0%
!! CTATAGTCTAAAATATCTGT+TGG - tig0012925:20700-20719 Msa1352890:five_prime_UTR 25.0%
!! TAATAAAATGAGATTTTGCC+CGG - tig0012925:20738-20757 Msa1352890:five_prime_UTR 25.0%
!! ATTCTATTGCTTTTCGCTTA+CGG + tig0012925:15753-15772 None:intergenic 30.0%
!! AGCTTAAATCTTTCGCTTTT+TGG - tig0012925:15849-15868 Msa1352890:three_prime_UTR 30.0%
!!! GCTTAAATCTTTCGCTTTTT+GGG - tig0012925:15850-15869 Msa1352890:three_prime_UTR 30.0%
CAACAATCTCAATGCTAAAT+TGG - tig0012925:15934-15953 Msa1352890:exon 30.0%
! ACAAAGTTAGAGGGTATAAT+CGG + tig0012925:16004-16023 None:intergenic 30.0%
! AGGAAGTTGTTTAAGTTCAA+TGG - tig0012925:16140-16159 Msa1352890:intron 30.0%
! GGAAGTTGTTTAAGTTCAAT+GGG - tig0012925:16141-16160 Msa1352890:intron 30.0%
AAATAACTTCGTGATGGTTA+TGG - tig0012925:16552-16571 Msa1352890:intron 30.0%
TAGCACTTACACTTTGAATA+AGG - tig0012925:16665-16684 Msa1352890:intron 30.0%
TAAATAATTGTAGTCTGGTG+GGG - tig0012925:17180-17199 Msa1352890:intron 30.0%
! TTTCTTCTTTCTTTTCTCTG+AGG - tig0012925:17214-17233 Msa1352890:intron 30.0%
GATTATGTTAATGATGCTTC+TGG - tig0012925:17248-17267 Msa1352890:intron 30.0%
! CAAGTTTATATGGTCTTTTG+TGG - tig0012925:17346-17365 Msa1352890:intron 30.0%
! CAACGGTTAAATTTGAGATT+TGG - tig0012925:17426-17445 Msa1352890:intron 30.0%
! TTTTTGAATACCTACTTCGT+TGG - tig0012925:17566-17585 Msa1352890:intron 30.0%
! TTTTGAATACCTACTTCGTT+GGG - tig0012925:17567-17586 Msa1352890:intron 30.0%
AAAAATGTTCTGATTCTGAC+TGG - tig0012925:17729-17748 Msa1352890:intron 30.0%
AAAATGTTCTGATTCTGACT+GGG - tig0012925:17730-17749 Msa1352890:intron 30.0%
CATATTATCAGCTCTTTATC+AGG - tig0012925:17873-17892 Msa1352890:intron 30.0%
TCATTACAATTGTATGCACA+GGG - tig0012925:17923-17942 Msa1352890:intron 30.0%
!!! CATCAATTTTTTCCTAAACG+TGG - tig0012925:18012-18031 Msa1352890:intron 30.0%
TACTTCTATCTTCTATTCAC+AGG - tig0012925:18148-18167 Msa1352890:intron 30.0%
!!! AGGTATTAACTTTTTGGTTC+AGG - tig0012925:18217-18236 Msa1352890:intron 30.0%
TAAAACCATTTCCAAACTTC+TGG - tig0012925:18315-18334 Msa1352890:intron 30.0%
ATGGAAAATGCTTTACTAGA+AGG + tig0012925:18347-18366 None:intergenic 30.0%
TCAAAAGTTAAATGTGTCTC+TGG + tig0012925:18588-18607 None:intergenic 30.0%
TTACTATACATCTTGCTAGA+AGG - tig0012925:18662-18681 Msa1352890:intron 30.0%
TTCCTTTCTCTAGTAATACT+TGG - tig0012925:18803-18822 Msa1352890:intron 30.0%
AACCAAGTATTACTAGAGAA+AGG + tig0012925:18808-18827 None:intergenic 30.0%
TTCTCTAGTAATACTTGGTT+TGG - tig0012925:18808-18827 Msa1352890:intron 30.0%
GAGAATATTGACACTTACTT+CGG + tig0012925:18974-18993 None:intergenic 30.0%
! TGTTATTGATTGCTTAGGAT+AGG + tig0012925:19076-19095 None:intergenic 30.0%
!! TGCTTTGTTATTGATTGCTT+AGG + tig0012925:19081-19100 None:intergenic 30.0%
! CAATCAATAACAAAGCATCA+GGG - tig0012925:19084-19103 Msa1352890:intron 30.0%
! AATCAATAACAAAGCATCAG+GGG - tig0012925:19085-19104 Msa1352890:intron 30.0%
TTAGCAAAGAAGTTAATCAC+AGG - tig0012925:19129-19148 Msa1352890:intron 30.0%
!!! TCAATTGCTTTTGAAGTGTT+TGG - tig0012925:19198-19217 Msa1352890:intron 30.0%
! AGCATGATTGGTAATTTCAT+AGG - tig0012925:19381-19400 Msa1352890:intron 30.0%
TTTCGATTCATTGATATTGC+AGG - tig0012925:19463-19482 Msa1352890:intron 30.0%
! GAAAAACAAACCATTTTCCT+CGG + tig0012925:19504-19523 None:intergenic 30.0%
!!! GGAAAATGGTTTGTTTTTCA+TGG - tig0012925:19505-19524 Msa1352890:intron 30.0%
ATGCTTTAATCTGCAGAAAA+TGG - tig0012925:19600-19619 Msa1352890:intron 30.0%
TGGTTGAATCCCTTATAAAA+AGG - tig0012925:19637-19656 Msa1352890:intron 30.0%
TGAATATGATAGCAATGTCT+TGG + tig0012925:19749-19768 None:intergenic 30.0%
CAACATTAAAGTGACCAAAA+AGG + tig0012925:19972-19991 None:intergenic 30.0%
ACACTTTATTGCAACATTCA+TGG - tig0012925:20019-20038 Msa1352890:intron 30.0%
CACTTTATTGCAACATTCAT+GGG - tig0012925:20020-20039 Msa1352890:intron 30.0%
TAGGCAAAATGTTAGTAAGT+CGG - tig0012925:20144-20163 Msa1352890:intron 30.0%
!!! GGTAGTAATGTTAGTTTTCA+GGG - tig0012925:20165-20184 Msa1352890:intron 30.0%
TACACAAGCAATTGTAAGTT+AGG + tig0012925:20385-20404 None:intergenic 30.0%
AAACAGCTAAAAGATTACCA+AGG - tig0012925:20404-20423 Msa1352890:intron 30.0%
AACAGCTAAAAGATTACCAA+GGG - tig0012925:20405-20424 Msa1352890:intron 30.0%
AGTGTTTAAGCTGTATTTAC+CGG - tig0012925:20510-20529 Msa1352890:CDS 30.0%
! AATAAAATGAGATTTTGCCC+GGG - tig0012925:20739-20758 Msa1352890:five_prime_UTR 30.0%
ACATTACAGTGACAACATGT+CGG + tig0012925:16368-16387 None:intergenic 35.0%
ATGTTGTCACTGTAATGTGA+TGG - tig0012925:16370-16389 Msa1352890:intron 35.0%
TCACTGTAATGTGATGGTTA+CGG - tig0012925:16376-16395 Msa1352890:intron 35.0%
GTCATGTATTACCTATGCTT+TGG - tig0012925:16411-16430 Msa1352890:intron 35.0%
AAGACTTGAATCCAAAGCAT+AGG + tig0012925:16425-16444 None:intergenic 35.0%
TAGCCCTTACACTTTGATTA+AGG - tig0012925:16482-16501 Msa1352890:intron 35.0%
CCTCCTTAATCAAAGTGTAA+GGG + tig0012925:16488-16507 None:intergenic 35.0%
ACCTCCTTAATCAAAGTGTA+AGG + tig0012925:16489-16508 None:intergenic 35.0%
AAGACTTGAATCCGAAGTAT+CGG + tig0012925:16608-16627 None:intergenic 35.0%
TAATTTCGTGATGGTTATGG+AGG - tig0012925:16739-16758 Msa1352890:intron 35.0%
!! TACTAGTAAGTTCTGAAGCA+CGG - tig0012925:16971-16990 Msa1352890:intron 35.0%
AAATAATTGTAGTCTGGTGG+GGG - tig0012925:17181-17200 Msa1352890:intron 35.0%
!!! TTTTGAGCCCTGTTATTTTG+TGG - tig0012925:17278-17297 Msa1352890:intron 35.0%
! GGTGATGTGCTTTAAATGTA+TGG - tig0012925:17303-17322 Msa1352890:intron 35.0%
ATTAGCAGTAAATGACGCAA+CGG - tig0012925:17409-17428 Msa1352890:intron 35.0%
! GATGGTTAGTTAACAGACAT+AGG - tig0012925:17672-17691 Msa1352890:intron 35.0%
CTGTGCATACAATTGTAATG+AGG + tig0012925:17924-17943 None:intergenic 35.0%
CTCATTACAATTGTATGCAC+AGG - tig0012925:17922-17941 Msa1352890:intron 35.0%
CCAATTATAGTTGGAACAAG+TGG + tig0012925:17950-17969 None:intergenic 35.0%
CCACTTGTTCCAACTATAAT+TGG - tig0012925:17947-17966 Msa1352890:intron 35.0%
GAAGAGATCGAATATGCTAA+CGG - tig0012925:18034-18053 Msa1352890:intron 35.0%
AAGAGATCGAATATGCTAAC+GGG - tig0012925:18035-18054 Msa1352890:intron 35.0%
! GGATTCTTTCTTTTGTCTTG+TGG - tig0012925:18056-18075 Msa1352890:intron 35.0%
! TCTTTCTTTTGTCTTGTGGT+TGG - tig0012925:18060-18079 Msa1352890:intron 35.0%
! CTTTCTTTTGTCTTGTGGTT+GGG - tig0012925:18061-18080 Msa1352890:intron 35.0%
! TGCATGTAAGTATTGTGAAC+AGG - tig0012925:18533-18552 Msa1352890:intron 35.0%
! GCATGTAAGTATTGTGAACA+GGG - tig0012925:18534-18553 Msa1352890:intron 35.0%
CAATCAAACATTGTCTGCTT+TGG - tig0012925:18777-18796 Msa1352890:intron 35.0%
! AATTTCATGTTGTTGCTTGC+AGG - tig0012925:18880-18899 Msa1352890:intron 35.0%
GCACATAACACTTACTAACA+TGG + tig0012925:19014-19033 None:intergenic 35.0%
! GCAATCAATAACAAAGCATC+AGG - tig0012925:19083-19102 Msa1352890:intron 35.0%
CTCCATCAGATTTCACTAAT+TGG - tig0012925:19167-19186 Msa1352890:intron 35.0%
GACCAATTAGTGAAATCTGA+TGG + tig0012925:19172-19191 None:intergenic 35.0%
!!! TTGCTTTTGAAGTGTTTGGA+AGG - tig0012925:19202-19221 Msa1352890:intron 35.0%
!!! TGCTTTTGAAGTGTTTGGAA+GGG - tig0012925:19203-19222 Msa1352890:intron 35.0%
ATTACCAATCATGCTGCAAT+GGG + tig0012925:19376-19395 None:intergenic 35.0%
AATTACCAATCATGCTGCAA+TGG + tig0012925:19377-19396 None:intergenic 35.0%
ATCGAAAGTGATAAACCAGT+AGG + tig0012925:19450-19469 None:intergenic 35.0%
! ATTAACATTGGCTGCAGATT+TGG + tig0012925:19540-19559 None:intergenic 35.0%
AATATTATTAGCCCGAAGAG+TGG - tig0012925:19672-19691 Msa1352890:intron 35.0%
ATATTATTAGCCCGAAGAGT+GGG - tig0012925:19673-19692 Msa1352890:intron 35.0%
CTCTAATTGGTTATAAGCCA+TGG - tig0012925:19807-19826 Msa1352890:intron 35.0%
AGTCTTCTCTAATTGGCTAT+TGG - tig0012925:19870-19889 Msa1352890:intron 35.0%
AGGACAAAAGGGAAAATTTC+TGG + tig0012925:19995-20014 None:intergenic 35.0%
GATACGCCAATAACATAAAG+CGG + tig0012925:20074-20093 None:intergenic 35.0%
!!! CGGTAGTAATGTTAGTTTTC+AGG - tig0012925:20164-20183 Msa1352890:intron 35.0%
GAACCTCCTTAAAACTCATT+TGG - tig0012925:20198-20217 Msa1352890:intron 35.0%
!!! ACACCAAATGAGTTTTAAGG+AGG + tig0012925:20204-20223 None:intergenic 35.0%
! GAGACACCAAATGAGTTTTA+AGG + tig0012925:20207-20226 None:intergenic 35.0%
ACAAATTAAAAAGGGAAGGC+CGG + tig0012925:20532-20551 None:intergenic 35.0%
TTTATGTACTGCACAGAACT+TGG - tig0012925:20568-20587 Msa1352890:five_prime_UTR 35.0%
TTATGTACTGCACAGAACTT+GGG - tig0012925:20569-20588 Msa1352890:five_prime_UTR 35.0%
CTTGGGTTATCACTGTTATA+TGG - tig0012925:20586-20605 Msa1352890:five_prime_UTR 35.0%
! GTTGGTTCAAAAATATCCCT+TGG - tig0012925:20650-20669 Msa1352890:five_prime_UTR 35.0%
ATATCCCTTGGATGCATATT+TGG - tig0012925:20662-20681 Msa1352890:five_prime_UTR 35.0%
TATCCCTTGGATGCATATTT+GGG - tig0012925:20663-20682 Msa1352890:five_prime_UTR 35.0%
GAGAAGAGAATTGGATCGAT+CGG + tig0012925:15897-15916 None:intergenic 40.0%
TCGATCCAATTCTCTTCTCA+TGG - tig0012925:15898-15917 Msa1352890:three_prime_UTR 40.0%
AGATGAAGGAAGAGAAACAG+AGG + tig0012925:15969-15988 None:intergenic 40.0%
! TCAGGTTCTTCTTGGTGATA+TGG - tig0012925:16031-16050 Msa1352890:intron 40.0%
! CAGGTTCTTCTTGGTGATAT+GGG - tig0012925:16032-16051 Msa1352890:intron 40.0%
GGGTCAATTTCTCGAATTTC+AGG - tig0012925:16091-16110 Msa1352890:intron 40.0%
TCTTGTCTGATGTTCCACAA+TGG - tig0012925:16441-16460 Msa1352890:intron 40.0%
CCCTTACACTTTGATTAAGG+AGG - tig0012925:16485-16504 Msa1352890:intron 40.0%
TACCACAGTAATGACACATG+CGG + tig0012925:16521-16540 None:intergenic 40.0%
TAACTTCGTGATGGTTATGG+AGG - tig0012925:16555-16574 Msa1352890:intron 40.0%
CTAACTACTACCTCCATTGT+GGG + tig0012925:16457-16476 None:intergenic 40.0%
ACCACAATAGTGACACATGT+CGG + tig0012925:16704-16723 None:intergenic 40.0%
TAGTGACTAGTGACACATGT+CGG + tig0012925:16807-16826 None:intergenic 40.0%
TGTCAGTGTCAGTGTTTCAT+AGG - tig0012925:16937-16956 Msa1352890:CDS 40.0%
CAGGAAACACCTAATCTAAG+AGG + tig0012925:17000-17019 None:intergenic 40.0%
TATCCATGTCAGTGTCTTGT+CGG - tig0012925:17112-17131 Msa1352890:intron 40.0%
TCACCAGCCACAAAATAACA+GGG + tig0012925:17288-17307 None:intergenic 40.0%
ATCACCAGCCACAAAATAAC+AGG + tig0012925:17289-17308 None:intergenic 40.0%
! TATATGGTCTTTTGTGGTGC+AGG - tig0012925:17352-17371 Msa1352890:intron 40.0%
TGGTGCAGGAATCAACAATA+GGG - tig0012925:17366-17385 Msa1352890:intron 40.0%
ACAAGAGAGATACCATAGCT+TGG - tig0012925:17460-17479 Msa1352890:intron 40.0%
ATTCGATCTCTTCCACGTTT+AGG + tig0012925:18027-18046 None:intergenic 40.0%
!!! TACCTTGCTTTTGAAGCTCT+TGG + tig0012925:18202-18221 None:intergenic 40.0%
ACCATTTCCAAACTTCTGGA+TGG - tig0012925:18319-18338 Msa1352890:intron 40.0%
ACCATCCAGAAGTTTGGAAA+TGG + tig0012925:18323-18342 None:intergenic 40.0%
GACATTGACATTGGCAGATA+TGG + tig0012925:18366-18385 None:intergenic 40.0%
TATTATTAGCCCGAAGAGTG+GGG - tig0012925:19674-19693 Msa1352890:intron 40.0%
CAATGTCTTGGAGTGTAAAG+TGG + tig0012925:19737-19756 None:intergenic 40.0%
GAAGACAAGTTTCAGGAACA+AGG + tig0012925:19931-19950 None:intergenic 40.0%
! ATGGACTGAAGACAAGTTTC+AGG + tig0012925:19938-19957 None:intergenic 40.0%
! ATTTTCCTTCTGTTCCTAGC+AGG - tig0012925:20045-20064 Msa1352890:intron 40.0%
AGGCTTCCGCTTTATGTTAT+TGG - tig0012925:20065-20084 Msa1352890:intron 40.0%
GGAATATGTCCCACATATGT+AGG + tig0012925:20245-20264 None:intergenic 40.0%
ATTTGCCACACAGAACTTGT+TGG - tig0012925:20632-20651 Msa1352890:five_prime_UTR 40.0%
TTGAACCAACAAGTTCTGTG+TGG + tig0012925:20640-20659 None:intergenic 40.0%
GATCGGAAGTGAAGAGAGAA+AGG + tig0012925:15880-15899 None:intergenic 45.0%
CGTAGCCATGAGAAGAGAAT+TGG + tig0012925:15906-15925 None:intergenic 45.0%
TCTCTTCTCATGGCTACGAT+CGG - tig0012925:15908-15927 Msa1352890:three_prime_UTR 45.0%
CTGTAATGTGATGGTTACGG+AGG - tig0012925:16379-16398 Msa1352890:intron 45.0%
TGTCTGATGTTCCACAATGG+AGG - tig0012925:16444-16463 Msa1352890:intron 45.0%
GCTAACTACTACCTCCATTG+TGG + tig0012925:16458-16477 None:intergenic 45.0%
TATCGGCAATACATGGCTGA+TGG + tig0012925:16591-16610 None:intergenic 45.0%
GCCATGTATTGCCGATACTT+CGG - tig0012925:16594-16613 Msa1352890:intron 45.0%
!! TCCGAAGTATCGGCAATACA+TGG + tig0012925:16598-16617 None:intergenic 45.0%
TCTTGTCTGATGTCCCACAA+TGG - tig0012925:16624-16643 Msa1352890:intron 45.0%
GCTAACTACTACCTCCATTG+TGG + tig0012925:16458-16477 None:intergenic 45.0%
! TCCGACATGTGTCACTATTG+TGG - tig0012925:16700-16719 Msa1352890:intron 45.0%
ATGTAAACACACGCTGACAC+AGG + tig0012925:16884-16903 None:intergenic 45.0%
TGACATGGATATGTCGACAC+AGG + tig0012925:17103-17122 None:intergenic 45.0%
GTGGTGCAGGAATCAACAAT+AGG - tig0012925:17365-17384 Msa1352890:intron 45.0%
GGTGCAGGAATCAACAATAG+GGG - tig0012925:17367-17386 Msa1352890:intron 45.0%
! TTTGAGATTTGGGACACAGC+AGG - tig0012925:17437-17456 Msa1352890:intron 45.0%
AATACATGGGAGCCAAGCTA+TGG + tig0012925:17475-17494 None:intergenic 45.0%
TTGGCTCCCATGTATTACAG+AGG - tig0012925:17479-17498 Msa1352890:intron 45.0%
CAAAGATTGCCCAACGAAGT+AGG + tig0012925:17579-17598 None:intergenic 45.0%
ATTGAGACACAACTCAGACC+TGG - tig0012925:17797-17816 Msa1352890:intron 45.0%
CTTCTCACGAGCTAAGAAGT+GGG - tig0012925:18175-18194 Msa1352890:intron 45.0%
GTCCAAGAGCTTCAAAAGCA+AGG - tig0012925:18197-18216 Msa1352890:intron 45.0%
!! GAAGGTACCATCCAGAAGTT+TGG + tig0012925:18329-18348 None:intergenic 45.0%
AACACGAGGGACATTGACAT+TGG + tig0012925:18375-18394 None:intergenic 45.0%
CAAGAGCCATGACCATGTTT+GGG + tig0012925:18909-18928 None:intergenic 45.0%
TGCTGGCAACAAATCTGACT+TGG - tig0012925:18927-18946 Msa1352890:CDS 45.0%
!! ATCACTTTTCCTGGACCTAC+TGG - tig0012925:19432-19451 Msa1352890:intron 45.0%
AGTGATAAACCAGTAGGTCC+AGG + tig0012925:19444-19463 None:intergenic 45.0%
CGTGTATATGCCGAGGAAAA+TGG - tig0012925:19491-19510 Msa1352890:intron 45.0%
AAGAAAGCTTCCCCACTCTT+CGG + tig0012925:19687-19706 None:intergenic 45.0%
! AGTGGGGAAGCTTTCTTTTG+AGG - tig0012925:19690-19709 Msa1352890:intron 45.0%
! GTGGGGAAGCTTTCTTTTGA+GGG - tig0012925:19691-19710 Msa1352890:intron 45.0%
CTCTAATTGGCTATTGGCCA+TGG - tig0012925:19876-19895 Msa1352890:intron 45.0%
AGGTTTGGATAACTGTGCCA+TGG + tig0012925:19896-19915 None:intergenic 45.0%
AGGCATGTCATGAGAAGGTT+TGG + tig0012925:19911-19930 None:intergenic 45.0%
GAACAAGGCATGTCATGAGA+AGG + tig0012925:19916-19935 None:intergenic 45.0%
TCACCAATCGCCTACATATG+TGG - tig0012925:20232-20251 Msa1352890:intron 45.0%
CACCAATCGCCTACATATGT+GGG - tig0012925:20233-20252 Msa1352890:intron 45.0%
GGACCCAAATATGCATCCAA+GGG + tig0012925:20669-20688 None:intergenic 45.0%
AGGACCCAAATATGCATCCA+AGG + tig0012925:20670-20689 None:intergenic 45.0%
! CTTCTTGGTGATATGGGTGC+TGG - tig0012925:16038-16057 Msa1352890:intron 50.0%
! GTCCGCATGTGTCATTACTG+TGG - tig0012925:16516-16535 Msa1352890:intron 50.0%
TGTCTGATGTCCCACAATGG+AGG - tig0012925:16627-16646 Msa1352890:intron 50.0%
! TCAGTGGTGTCAGTGCTACA+CGG + tig0012925:16838-16857 None:intergenic 50.0%
!! GTAGCACTGACACCACTGAT+TGG - tig0012925:16839-16858 Msa1352890:intron 50.0%
CTGAACACGTCTCCAATCAG+TGG + tig0012925:16854-16873 None:intergenic 50.0%
AAACACACGCTGACACAGGT+TGG + tig0012925:16880-16899 None:intergenic 50.0%
GCACGGACACCTCTTAGATT+AGG - tig0012925:16988-17007 Msa1352890:intron 50.0%
ACACCGACAAGACACTGACA+TGG + tig0012925:17118-17137 None:intergenic 50.0%
!!! GAGCCCTGTTATTTTGTGGC+TGG - tig0012925:17282-17301 Msa1352890:intron 50.0%
GCTGCGCCTCTGTAATACAT+GGG + tig0012925:17488-17507 None:intergenic 50.0%
AGCTGCGCCTCTGTAATACA+TGG + tig0012925:17489-17508 None:intergenic 50.0%
! CTTTTGTCTTGTGGTTGGGC+TGG - tig0012925:18065-18084 Msa1352890:intron 50.0%
CCACTTCTTAGCTCGTGAGA+AGG + tig0012925:18177-18196 None:intergenic 50.0%
CCTTCTCACGAGCTAAGAAG+TGG - tig0012925:18174-18193 Msa1352890:intron 50.0%
!! TGTCTCTGGCTCTCTGTACA+TGG + tig0012925:18574-18593 None:intergenic 50.0%
AGGCAACCCAAACATGGTCA+TGG - tig0012925:18900-18919 Msa1352890:intron 50.0%
GCAAGAGCCATGACCATGTT+TGG + tig0012925:18910-18929 None:intergenic 50.0%
AACATGGTCATGGCTCTTGC+TGG - tig0012925:18910-18929 Msa1352890:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - tig0012925:19251-19270 Msa1352890:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - tig0012925:19252-19271 Msa1352890:intron 50.0%
GATGCCCATTGCAGCATGAT+TGG - tig0012925:19369-19388 Msa1352890:intron 50.0%
ATTGGCTGCAGATTTGGCAG+AGG + tig0012925:19534-19553 None:intergenic 50.0%
AGAAAGCTTCCCCACTCTTC+GGG + tig0012925:19686-19705 None:intergenic 50.0%
ATTCAGACAACTGTGCGCCA+TGG + tig0012925:19827-19846 None:intergenic 50.0%
ACATAAAGCGGAAGCCTGCT+AGG + tig0012925:20062-20081 None:intergenic 50.0%
GTCCCACATATGTAGGCGAT+TGG + tig0012925:20238-20257 None:intergenic 50.0%
CAACAAGAACCATCCCTGCT+GGG + tig0012925:20447-20466 None:intergenic 50.0%
TCAACAAGAACCATCCCTGC+TGG + tig0012925:20448-20467 None:intergenic 50.0%
! CTTGTTGATAGACCTGCCGA+AGG - tig0012925:20460-20479 Msa1352890:intron 50.0%
ATAGACCTGCCGAAGGATCT+AGG - tig0012925:20467-20486 Msa1352890:intron 50.0%
TAGACCTGCCGAAGGATCTA+GGG - tig0012925:20468-20487 Msa1352890:intron 50.0%
! TCTTGTGGTTGGGCTGGATC+TGG - tig0012925:18071-18090 Msa1352890:intron 55.0%
GCTTGCAGGCAACCCAAACA+TGG - tig0012925:18894-18913 Msa1352890:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+TGG - tig0012925:19257-19276 Msa1352890:intron 55.0%
GTGTGTGTGTGTGTGTGGGT+GGG - tig0012925:19258-19277 Msa1352890:intron 55.0%
TGTGTGTGTGTGTGTGGGTG+GGG - tig0012925:19259-19278 Msa1352890:intron 55.0%
GTGGGGGCTAGGTTTCAATC+TGG - tig0012925:19281-19300 Msa1352890:intron 55.0%
GGAAGCTCGTGTATATGCCG+AGG - tig0012925:19484-19503 Msa1352890:intron 55.0%
GGAAGCCTGCTAGGAACAGA+AGG + tig0012925:20053-20072 None:intergenic 55.0%
! TTTTGAGCTGGCTGAGCCCT+TGG + tig0012925:20424-20443 None:intergenic 55.0%
AGCCAGCTCAAAACCCAGCA+GGG - tig0012925:20431-20450 Msa1352890:intron 55.0%
!!! ATCCCTGCTGGGTTTTGAGC+TGG + tig0012925:20436-20455 None:intergenic 55.0%
AGCTCAAAACCCAGCAGGGA+TGG - tig0012925:20435-20454 Msa1352890:intron 55.0%
CGATGCAGCCCTAGATCCTT+CGG + tig0012925:20479-20498 None:intergenic 55.0%
TGTGTGTGTGTGGGTGGGGT+GGG - tig0012925:19263-19282 Msa1352890:intron 60.0%
CAGCCAGCTCAAAACCCAGC+AGG - tig0012925:20430-20449 Msa1352890:intron 60.0%
TTCCTGTGTCCGACGCGCGT+CGG - tig0012925:17014-17033 Msa1352890:intron 65.0%
AGACAGACACCGACGCGCGT+CGG + tig0012925:17026-17045 None:intergenic 65.0%
GTGTGTGTGTGTGGGTGGGG+TGG - tig0012925:19262-19281 Msa1352890:intron 65.0%
GTGTGTGTGTGGGTGGGGTG+GGG - tig0012925:19264-19283 Msa1352890:intron 65.0%
TGTGTGTGTGGGTGGGGTGG+GGG - tig0012925:19265-19284 Msa1352890:intron 65.0%
GCAGCCCTAGATCCTTCGGC+AGG + tig0012925:20475-20494 None:intergenic 65.0%
CACCGACGCGCGTCGGACAC+AGG + tig0012925:17019-17038 None:intergenic 75.0%
GTGTGGGTGGGGTGGGGGCT+AGG - tig0012925:19270-19289 Msa1352890:intron 75.0%
Chromosome Type Strat End Strand Name
tig0012925 gene 15689 20767 15689 ID=Msa1352890;Name=Msa1352890
tig0012925 mRNA 15689 20767 15689 ID=Msa1352890-mRNA-1;Parent=Msa1352890;Name=Msa1352890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=228|1|1|1|1|1|7|257|200
tig0012925 exon 15689 16046 15689 ID=Msa1352890-mRNA-1:exon:8432;Parent=Msa1352890-mRNA-1
tig0012925 exon 16878 16971 16878 ID=Msa1352890-mRNA-1:exon:8431;Parent=Msa1352890-mRNA-1
tig0012925 exon 17481 17554 17481 ID=Msa1352890-mRNA-1:exon:8430;Parent=Msa1352890-mRNA-1
tig0012925 exon 18238 18286 18238 ID=Msa1352890-mRNA-1:exon:8429;Parent=Msa1352890-mRNA-1
tig0012925 exon 18915 19082 18915 ID=Msa1352890-mRNA-1:exon:8428;Parent=Msa1352890-mRNA-1
tig0012925 exon 20344 20421 20344 ID=Msa1352890-mRNA-1:exon:8427;Parent=Msa1352890-mRNA-1
tig0012925 exon 20501 20767 20501 ID=Msa1352890-mRNA-1:exon:8426;Parent=Msa1352890-mRNA-1
tig0012925 five_prime_UTR 20540 20767 20540 ID=Msa1352890-mRNA-1:five_prime_utr;Parent=Msa1352890-mRNA-1
tig0012925 CDS 20501 20539 20501 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 20344 20421 20344 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 18915 19082 18915 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 18238 18286 18238 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 17481 17554 17481 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 16878 16971 16878 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 CDS 15946 16046 15946 ID=Msa1352890-mRNA-1:cds;Parent=Msa1352890-mRNA-1
tig0012925 three_prime_UTR 15689 15945 15689 ID=Msa1352890-mRNA-1:three_prime_utr;Parent=Msa1352890-mRNA-1
Gene Sequence

>Msa1352890

ATGGCTACGATCGGACACAACAATCTCAATGCTAAATTGGTTCTTCTTGGTGATATGGGTGCTGGAAAATCTAGTCTTGTTTTAAGATTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGCAGCATTTTTCTCTCAGACATTAGCAGTAAATGACGCAACGGTTAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTACAGAGGCGCAGCTGCTGCTATAATTGTCTATGACATCACTAGCTCAGATTCCTTCTCACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGCAACCCAAACATGGTCATGGCTCTTGCTGGCAACAAATCTGACTTGGAAGATAAAAGAAAAGTGACAGCCGAAGAAGCTCGTGTATATGCCGAGGAAAATGGTTTGTTTTTCATGGAGACCTCTGCCAAATCTGCAGCCAATGTTAATGATGTATTTTATGAAATAGCTAAAAGATTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGATAGACCTGCCGAAGGATCTAGGGCTGCATCGTGTTGTTCATAA
Protein sequence

>Msa1352890

MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFSRAKKWVQELQKQGNPNMVMALAGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGSRAASCCS*