Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121210 | XP_013468100.1 | 93.388 | 242 | 16 | 0 | 1 | 242 | 1 | 242 | 1.50e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121210 | sp|Q9FSG7|TP1A_MALDO | 71.730 | 237 | 65 | 2 | 8 | 242 | 10 | 246 | 1.17e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121210 | I3T3P8 | 93.388 | 242 | 16 | 0 | 1 | 242 | 1 | 242 | 7.18e-164 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025460 | Msa0121210 | 0.907025 | 7.908676e-81 | -8.615850e-47 |
| Msa0072990 | Msa0121210 | 0.877071 | 8.430827e-69 | -8.615850e-47 |
| Msa0121210 | Msa0166320 | 0.877417 | 6.390458e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121210 | MtrunA17_Chr1g0180121 | 93.388 | 242 | 16 | 0 | 1 | 242 | 1 | 242 | 1.38e-167 | 462 |
| Msa0121210 | MtrunA17_Chr1g0180161 | 85.950 | 242 | 34 | 0 | 1 | 242 | 1 | 242 | 1.99e-153 | 427 |
| Msa0121210 | MtrunA17_Chr1g0180221 | 85.537 | 242 | 35 | 0 | 1 | 242 | 41 | 282 | 2.86e-153 | 427 |
| Msa0121210 | MtrunA17_Chr1g0180231 | 84.711 | 242 | 37 | 0 | 1 | 242 | 1 | 242 | 2.89e-152 | 423 |
| Msa0121210 | MtrunA17_Chr1g0179871 | 84.711 | 242 | 37 | 0 | 1 | 242 | 1 | 242 | 2.89e-152 | 423 |
| Msa0121210 | MtrunA17_Chr1g0179891 | 82.278 | 237 | 42 | 0 | 6 | 242 | 1 | 237 | 1.16e-144 | 404 |
| Msa0121210 | MtrunA17_Chr1g0179851 | 81.116 | 233 | 44 | 0 | 10 | 242 | 7 | 239 | 1.96e-140 | 393 |
| Msa0121210 | MtrunA17_Chr7g0265011 | 71.967 | 239 | 67 | 0 | 4 | 242 | 49 | 287 | 9.19e-131 | 370 |
| Msa0121210 | MtrunA17_Chr2g0312181 | 61.925 | 239 | 89 | 2 | 6 | 242 | 5 | 243 | 1.58e-101 | 295 |
| Msa0121210 | MtrunA17_Chr1g0156711 | 54.918 | 244 | 105 | 4 | 1 | 241 | 4 | 245 | 1.60e-88 | 265 |
| Msa0121210 | MtrunA17_Chr3g0142781 | 56.561 | 221 | 93 | 3 | 25 | 242 | 29 | 249 | 4.54e-83 | 251 |
| Msa0121210 | MtrunA17_Chr4g0037331 | 54.286 | 245 | 102 | 6 | 1 | 241 | 1 | 239 | 6.76e-83 | 251 |
| Msa0121210 | MtrunA17_Chr8g0371781 | 54.185 | 227 | 96 | 3 | 22 | 241 | 28 | 253 | 5.19e-82 | 247 |
| Msa0121210 | MtrunA17_Chr5g0405611 | 52.101 | 238 | 102 | 7 | 8 | 242 | 80 | 308 | 8.07e-80 | 244 |
| Msa0121210 | MtrunA17_Chr8g0357311 | 51.012 | 247 | 110 | 6 | 1 | 242 | 7 | 247 | 8.89e-79 | 238 |
| Msa0121210 | MtrunA17_Chr8g0352471 | 51.230 | 244 | 110 | 6 | 3 | 242 | 9 | 247 | 6.48e-78 | 237 |
| Msa0121210 | MtrunA17_Chr1g0154591 | 56.561 | 221 | 89 | 6 | 25 | 242 | 16 | 232 | 4.96e-77 | 232 |
| Msa0121210 | MtrunA17_Chr8g0371771 | 48.936 | 235 | 111 | 4 | 8 | 241 | 17 | 243 | 1.02e-76 | 234 |
| Msa0121210 | MtrunA17_Chr5g0405581 | 50.000 | 250 | 112 | 6 | 1 | 242 | 7 | 251 | 1.58e-76 | 233 |
| Msa0121210 | MtrunA17_Chr8g0351851 | 48.936 | 235 | 114 | 5 | 10 | 241 | 6 | 237 | 2.14e-76 | 231 |
| Msa0121210 | MtrunA17_Chr4g0037351 | 51.131 | 221 | 103 | 4 | 26 | 242 | 29 | 248 | 6.39e-74 | 228 |
| Msa0121210 | MtrunA17_Chr3g0141341 | 52.679 | 224 | 101 | 5 | 21 | 242 | 11 | 231 | 4.80e-73 | 222 |
| Msa0121210 | MtrunA17_Chr5g0428801 | 49.383 | 243 | 111 | 6 | 10 | 242 | 10 | 250 | 2.39e-71 | 220 |
| Msa0121210 | MtrunA17_Chr2g0311521 | 46.531 | 245 | 115 | 5 | 12 | 242 | 5 | 247 | 1.89e-69 | 230 |
| Msa0121210 | MtrunA17_Chr8g0392961 | 50.228 | 219 | 103 | 5 | 26 | 242 | 31 | 245 | 2.93e-69 | 213 |
| Msa0121210 | MtrunA17_Chr7g0239131 | 46.122 | 245 | 126 | 6 | 1 | 242 | 1 | 242 | 4.22e-69 | 213 |
| Msa0121210 | MtrunA17_Chr6g0482741 | 46.903 | 226 | 114 | 5 | 19 | 242 | 19 | 240 | 2.85e-68 | 210 |
| Msa0121210 | MtrunA17_Chr3g0112091 | 43.333 | 240 | 126 | 6 | 10 | 242 | 1 | 237 | 3.40e-68 | 210 |
| Msa0121210 | MtrunA17_Chr2g0311561 | 45.726 | 234 | 119 | 5 | 15 | 242 | 1 | 232 | 2.43e-66 | 207 |
| Msa0121210 | MtrunA17_Chr6g0452331 | 43.373 | 249 | 131 | 7 | 2 | 242 | 6 | 252 | 2.06e-64 | 201 |
| Msa0121210 | MtrunA17_Chr4g0031221 | 43.830 | 235 | 125 | 5 | 12 | 241 | 19 | 251 | 1.47e-63 | 198 |
| Msa0121210 | MtrunA17_Chr2g0311551 | 45.614 | 228 | 119 | 4 | 18 | 242 | 19 | 244 | 1.96e-63 | 213 |
| Msa0121210 | MtrunA17_Chr5g0424221 | 46.789 | 218 | 105 | 7 | 25 | 241 | 32 | 239 | 1.21e-59 | 189 |
| Msa0121210 | MtrunA17_Chr5g0406771 | 44.068 | 177 | 91 | 5 | 10 | 180 | 1 | 175 | 3.77e-46 | 151 |
| Msa0121210 | MtrunA17_Chr2g0311501 | 43.478 | 184 | 94 | 7 | 65 | 242 | 3 | 182 | 7.52e-46 | 151 |
| Msa0121210 | MtrunA17_Chr2g0311531 | 40.000 | 230 | 107 | 10 | 17 | 242 | 20 | 222 | 8.03e-46 | 153 |
| Msa0121210 | MtrunA17_Chr5g0397821 | 40.359 | 223 | 110 | 8 | 22 | 242 | 24 | 225 | 4.45e-45 | 151 |
| Msa0121210 | MtrunA17_Chr5g0397831 | 36.800 | 250 | 122 | 9 | 1 | 242 | 15 | 236 | 3.57e-43 | 146 |
| Msa0121210 | MtrunA17_Chr2g0309611 | 34.821 | 224 | 139 | 5 | 19 | 240 | 31 | 249 | 2.77e-41 | 141 |
| Msa0121210 | MtrunA17_Chr8g0386341 | 36.546 | 249 | 127 | 10 | 1 | 242 | 24 | 248 | 3.43e-41 | 141 |
| Msa0121210 | MtrunA17_Chr1g0180181 | 70.787 | 89 | 25 | 1 | 155 | 242 | 11 | 99 | 4.24e-39 | 131 |
| Msa0121210 | MtrunA17_Chr1g0179911 | 33.061 | 245 | 139 | 7 | 6 | 242 | 11 | 238 | 1.14e-34 | 124 |
| Msa0121210 | MtrunA17_Chr1g0180171 | 62.667 | 75 | 27 | 1 | 2 | 75 | 14 | 88 | 2.17e-23 | 90.5 |
| Msa0121210 | MtrunA17_Chr8g0386351 | 34.591 | 159 | 89 | 6 | 1 | 153 | 43 | 192 | 2.67e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121210 | AT1G20030.1 | 56.951 | 223 | 91 | 3 | 25 | 242 | 6 | 228 | 2.72e-87 | 261 |
| Msa0121210 | AT1G20030.2 | 56.951 | 223 | 91 | 3 | 25 | 242 | 23 | 245 | 3.01e-87 | 261 |
| Msa0121210 | AT4G38660.1 | 54.545 | 242 | 100 | 5 | 5 | 242 | 10 | 245 | 1.92e-84 | 255 |
| Msa0121210 | AT1G75800.1 | 51.210 | 248 | 115 | 4 | 1 | 242 | 1 | 248 | 2.57e-84 | 254 |
| Msa0121210 | AT1G19320.1 | 53.600 | 250 | 103 | 7 | 1 | 241 | 1 | 246 | 9.25e-84 | 250 |
| Msa0121210 | AT4G38660.2 | 56.054 | 223 | 91 | 4 | 21 | 242 | 7 | 223 | 7.34e-83 | 250 |
| Msa0121210 | AT1G75040.1 | 54.508 | 244 | 99 | 8 | 3 | 242 | 4 | 239 | 3.32e-82 | 246 |
| Msa0121210 | AT2G17860.1 | 51.029 | 243 | 109 | 5 | 9 | 242 | 8 | 249 | 2.81e-81 | 244 |
| Msa0121210 | AT4G24180.5 | 51.172 | 256 | 106 | 6 | 1 | 242 | 1 | 251 | 5.94e-80 | 241 |
| Msa0121210 | AT4G24180.2 | 51.172 | 256 | 106 | 6 | 1 | 242 | 1 | 251 | 2.11e-79 | 241 |
| Msa0121210 | AT4G24180.6 | 52.632 | 247 | 100 | 7 | 8 | 242 | 15 | 256 | 5.78e-79 | 238 |
| Msa0121210 | AT4G24180.1 | 52.632 | 247 | 100 | 7 | 8 | 242 | 15 | 256 | 1.67e-78 | 239 |
| Msa0121210 | AT1G75030.1 | 52.227 | 247 | 109 | 8 | 1 | 242 | 1 | 243 | 3.75e-78 | 236 |
| Msa0121210 | AT1G75050.1 | 50.622 | 241 | 107 | 7 | 10 | 242 | 7 | 243 | 1.34e-77 | 234 |
| Msa0121210 | AT4G36010.1 | 51.282 | 234 | 105 | 3 | 17 | 242 | 18 | 250 | 5.43e-77 | 235 |
| Msa0121210 | AT4G36010.2 | 51.282 | 234 | 105 | 3 | 17 | 242 | 18 | 250 | 5.43e-77 | 235 |
| Msa0121210 | AT4G38670.3 | 49.372 | 239 | 117 | 3 | 8 | 242 | 9 | 247 | 7.20e-77 | 234 |
| Msa0121210 | AT4G38670.1 | 49.372 | 239 | 117 | 3 | 8 | 242 | 9 | 247 | 7.20e-77 | 234 |
| Msa0121210 | AT4G38670.2 | 52.036 | 221 | 102 | 3 | 26 | 242 | 11 | 231 | 4.98e-76 | 231 |
| Msa0121210 | AT5G38280.1 | 48.148 | 243 | 121 | 4 | 5 | 242 | 8 | 250 | 1.51e-73 | 236 |
| Msa0121210 | AT5G38280.2 | 48.148 | 243 | 121 | 4 | 5 | 242 | 8 | 250 | 1.93e-73 | 236 |
| Msa0121210 | AT4G24180.4 | 50.000 | 240 | 102 | 5 | 1 | 226 | 1 | 236 | 3.13e-72 | 223 |
| Msa0121210 | AT1G73620.1 | 50.679 | 221 | 103 | 5 | 24 | 242 | 44 | 260 | 1.74e-71 | 219 |
| Msa0121210 | AT4G24180.3 | 51.515 | 231 | 96 | 6 | 8 | 226 | 15 | 241 | 3.42e-71 | 221 |
| Msa0121210 | AT1G18250.2 | 49.123 | 228 | 110 | 5 | 17 | 242 | 17 | 240 | 4.19e-70 | 215 |
| Msa0121210 | AT1G18250.1 | 50.226 | 221 | 104 | 5 | 24 | 242 | 23 | 239 | 1.15e-69 | 214 |
| Msa0121210 | AT5G24620.1 | 47.984 | 248 | 119 | 6 | 3 | 242 | 6 | 251 | 5.25e-68 | 216 |
| Msa0121210 | AT5G24620.4 | 47.984 | 248 | 119 | 6 | 3 | 242 | 61 | 306 | 1.04e-67 | 216 |
| Msa0121210 | AT5G24620.3 | 47.984 | 248 | 119 | 6 | 3 | 242 | 82 | 327 | 1.33e-67 | 216 |
| Msa0121210 | AT2G28790.1 | 42.570 | 249 | 134 | 5 | 1 | 241 | 1 | 248 | 1.55e-65 | 204 |
| Msa0121210 | AT2G28790.2 | 42.570 | 249 | 134 | 5 | 1 | 241 | 26 | 273 | 1.79e-65 | 204 |
| Msa0121210 | AT5G02140.1 | 45.417 | 240 | 127 | 4 | 5 | 242 | 4 | 241 | 3.18e-65 | 204 |
| Msa0121210 | AT5G02140.2 | 45.417 | 240 | 127 | 4 | 5 | 242 | 4 | 241 | 3.36e-65 | 202 |
| Msa0121210 | AT5G40020.1 | 42.616 | 237 | 130 | 5 | 10 | 242 | 14 | 248 | 2.22e-62 | 196 |
| Msa0121210 | AT1G77700.3 | 46.789 | 218 | 105 | 7 | 25 | 241 | 64 | 271 | 6.42e-60 | 192 |
| Msa0121210 | AT1G77700.2 | 46.789 | 218 | 105 | 7 | 25 | 241 | 64 | 271 | 7.22e-60 | 191 |
| Msa0121210 | AT1G77700.1 | 46.789 | 218 | 105 | 7 | 25 | 241 | 92 | 299 | 3.66e-59 | 191 |
| Msa0121210 | AT4G18253.1 | 39.331 | 239 | 136 | 4 | 6 | 242 | 7 | 238 | 7.40e-53 | 171 |
| Msa0121210 | AT1G70250.1 | 43.172 | 227 | 113 | 8 | 25 | 242 | 148 | 367 | 4.43e-51 | 177 |
| Msa0121210 | AT4G18250.1 | 39.916 | 238 | 136 | 5 | 6 | 242 | 41 | 272 | 1.55e-48 | 169 |
| Msa0121210 | AT4G36000.2 | 53.425 | 146 | 60 | 3 | 97 | 242 | 1 | 138 | 4.42e-46 | 153 |
| Msa0121210 | AT4G36000.1 | 53.425 | 146 | 60 | 3 | 97 | 242 | 1 | 138 | 4.42e-46 | 153 |
| Msa0121210 | AT4G11650.1 | 38.298 | 235 | 121 | 9 | 10 | 242 | 11 | 223 | 6.28e-41 | 140 |
| Msa0121210 | AT5G24620.2 | 54.167 | 120 | 48 | 3 | 129 | 242 | 16 | 134 | 7.53e-33 | 121 |
| Msa0121210 | AT2G24810.1 | 58.228 | 79 | 31 | 2 | 163 | 241 | 116 | 192 | 3.25e-23 | 93.6 |
Find 78 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCATGGTCAGGTCGATTT+TGG | 0.053229 | 1_3:+46790756 | Msa0121210:CDS |
| AACCCTCAAAACTTATAAAT+TGG | 0.200517 | 1_3:+46789520 | None:intergenic |
| AGCTTTGCATTCCTCTTCTA+TGG | 0.241574 | 1_3:+46789642 | Msa0121210:CDS |
| ATAGAAGGTATAGTTCAATT+AGG | 0.247754 | 1_3:-46791284 | None:intergenic |
| CCCGCAGAGCTTCAATTAAA+AGG | 0.268083 | 1_3:+46791040 | Msa0121210:CDS |
| TGATCTCCGGTTAAGGTTCC+TGG | 0.268585 | 1_3:-46790665 | None:intergenic |
| AATCGCCATATTCTCGTTAT+TGG | 0.283463 | 1_3:-46789598 | None:intergenic |
| TAGGCATAGCTATAAGCTTC+TGG | 0.336607 | 1_3:-46791199 | None:intergenic |
| TCCGTTGTTGTTTGAGCATC+CGG | 0.338108 | 1_3:-46790786 | None:intergenic |
| ATAAACCAATAACGAGAATA+TGG | 0.340805 | 1_3:+46789593 | Msa0121210:exon |
| CGCAATCCCACCAGCAACTT+TGG | 0.341693 | 1_3:+46790868 | Msa0121210:CDS |
| AGCACTTTCACTTGCTCTAA+TGG | 0.354302 | 1_3:+46791235 | Msa0121210:CDS |
| TAGAAGGTATAGTTCAATTA+GGG | 0.357199 | 1_3:-46791283 | None:intergenic |
| CACACAGAGTTGATATTTGC+TGG | 0.361358 | 1_3:-46791016 | None:intergenic |
| GTTGTTTGAGCATCCGGTTC+GGG | 0.362235 | 1_3:-46790780 | None:intergenic |
| GCCACAGCCGATTGCGCGTC+TGG | 0.381507 | 1_3:+46790821 | Msa0121210:CDS |
| CTCTGTGTTTAAAATAAAAC+AGG | 0.404086 | 1_3:+46791320 | Msa0121210:three_prime_UTR |
| TGCTTGTAAGAGTGCTTGTT+TGG | 0.407476 | 1_3:+46791081 | Msa0121210:CDS |
| GTAATTTCAACCAAAGTTGC+TGG | 0.422022 | 1_3:-46790878 | None:intergenic |
| GTATGGCCAGGAACCTTAAC+CGG | 0.430415 | 1_3:+46790659 | Msa0121210:CDS |
| TGTTGTTTGAGCATCCGGTT+CGG | 0.430492 | 1_3:-46790781 | None:intergenic |
| TGATATTTCATACTTATTTG+TGG | 0.431329 | 1_3:-46791388 | None:intergenic |
| AGACATAACTGTATTATAGA+AGG | 0.453184 | 1_3:-46791299 | None:intergenic |
| GAAATTACCGTGGCATCAAA+TGG | 0.464138 | 1_3:+46790893 | Msa0121210:CDS |
| GACCTTCCTTCCCCATGGTC+AGG | 0.467806 | 1_3:+46790746 | Msa0121210:CDS |
| AAATATCTCGGAGTAATTTG+TGG | 0.469027 | 1_3:-46791164 | None:intergenic |
| AGAGCTTCAATTAAAAGGTT+CGG | 0.473590 | 1_3:+46791045 | Msa0121210:CDS |
| CCCAAAATCGACCTGACCAT+GGG | 0.475932 | 1_3:-46790757 | None:intergenic |
| AACTTGACCAGACGCGCAAT+CGG | 0.479141 | 1_3:-46790828 | None:intergenic |
| ATCTATTCGTGAATGTCACT+TGG | 0.490542 | 1_3:-46790625 | None:intergenic |
| GTGACTCCACAAGGCGGGAG+TGG | 0.497014 | 1_3:+46790971 | Msa0121210:CDS |
| AAGCCTCAACTATCAACAAC+AGG | 0.497185 | 1_3:+46790689 | Msa0121210:CDS |
| ACCAGACGCGCAATCGGCTG+TGG | 0.503521 | 1_3:-46790822 | None:intergenic |
| CAAGTTGAGTGCAATGGTGC+TGG | 0.505039 | 1_3:+46790845 | Msa0121210:CDS |
| AATATCTCGGAGTAATTTGT+GGG | 0.505487 | 1_3:-46791163 | None:intergenic |
| CTTCAATTAAAAGGTTCGGA+TGG | 0.512580 | 1_3:+46791049 | Msa0121210:CDS |
| AGCTATAAGCTTCTGGACAT+TGG | 0.513068 | 1_3:-46791192 | None:intergenic |
| AAACCTGTTGTTGATAGTTG+AGG | 0.530022 | 1_3:-46790692 | None:intergenic |
| CCTTGTGGAGTCACGGACAT+TGG | 0.533550 | 1_3:-46790962 | None:intergenic |
| CAATCGCCACTCCCGCCTTG+TGG | 0.533640 | 1_3:-46790977 | None:intergenic |
| CAGAATGTGATGGCATAGCT+AGG | 0.537085 | 1_3:-46791259 | None:intergenic |
| TTCAATTAAAAGGTTCGGAT+GGG | 0.546771 | 1_3:+46791050 | Msa0121210:CDS |
| TTGTCCTCCATTTGATGCCA+CGG | 0.548889 | 1_3:-46790900 | None:intergenic |
| GCCCAAAATCGACCTGACCA+TGG | 0.557623 | 1_3:-46790758 | None:intergenic |
| ATAGATGTGGATACACTGTA+TGG | 0.561201 | 1_3:+46790642 | Msa0121210:CDS |
| TGTCCGTGACTCCACAAGGC+GGG | 0.562371 | 1_3:+46790966 | Msa0121210:CDS |
| ACCGATCAATATTGTTGTCG+TGG | 0.565802 | 1_3:+46791112 | Msa0121210:CDS |
| GCTAAGGCAGAGAGCAACAC+TGG | 0.568124 | 1_3:-46789622 | None:intergenic |
| TGTGGATACACTGTATGGCC+AGG | 0.574199 | 1_3:+46790647 | Msa0121210:CDS |
| TACGATGTGAGCAACGTGGA+CGG | 0.575852 | 1_3:+46790929 | Msa0121210:CDS |
| AGAAGAGGAATGCAAAGCTA+AGG | 0.578555 | 1_3:-46789638 | None:intergenic |
| GATATTTGCTGGACAACTAG+AGG | 0.578884 | 1_3:-46791005 | None:intergenic |
| CCAATGTCCGTGACTCCACA+AGG | 0.583086 | 1_3:+46790962 | Msa0121210:CDS |
| ATTTCAACCAAAGTTGCTGG+TGG | 0.585079 | 1_3:-46790875 | None:intergenic |
| GACCTGACCATGGGGAAGGA+AGG | 0.587448 | 1_3:-46790748 | None:intergenic |
| TGTGTTTAAAATAAAACAGG+TGG | 0.590116 | 1_3:+46791323 | Msa0121210:three_prime_UTR |
| ACATTGGTTCTCAAATATCT+CGG | 0.592729 | 1_3:-46791176 | None:intergenic |
| AATGAAATATACCATAGAAG+AGG | 0.595352 | 1_3:-46789653 | None:intergenic |
| TTTCAACCAAAGTTGCTGGT+GGG | 0.596283 | 1_3:-46790874 | None:intergenic |
| AATCGACCTGACCATGGGGA+AGG | 0.604645 | 1_3:-46790752 | None:intergenic |
| AGTGCTGCTCTTATCATCGT+AGG | 0.606860 | 1_3:-46791218 | None:intergenic |
| TCTATTCGTGAATGTCACTT+GGG | 0.612879 | 1_3:-46790624 | None:intergenic |
| GTGACATTCACGAATAGATG+TGG | 0.615333 | 1_3:+46790629 | Msa0121210:CDS |
| TCCACGACAACAATATTGAT+CGG | 0.620824 | 1_3:-46791113 | None:intergenic |
| CAGTGGACCTTCCTTCCCCA+TGG | 0.623305 | 1_3:+46790741 | Msa0121210:CDS |
| ATCTCGGAGTAATTTGTGGG+TGG | 0.627398 | 1_3:-46791160 | None:intergenic |
| ACTCCCGCCTTGTGGAGTCA+CGG | 0.634641 | 1_3:-46790969 | None:intergenic |
| AACTTTGGTTGAAATTACCG+TGG | 0.634789 | 1_3:+46790883 | Msa0121210:CDS |
| TGTGGGTGGACATGTCGCCT+CGG | 0.637786 | 1_3:-46791146 | None:intergenic |
| CAATTAGGGACAGAATGTGA+TGG | 0.639803 | 1_3:-46791269 | None:intergenic |
| ACAAGGAGCAACAAGATCAG+TGG | 0.644645 | 1_3:+46790724 | Msa0121210:CDS |
| TCTGGTCAAGTTGAGTGCAA+TGG | 0.646954 | 1_3:+46790839 | Msa0121210:CDS |
| ATTACCGTGGCATCAAATGG+AGG | 0.665292 | 1_3:+46790896 | Msa0121210:CDS |
| ATGTCCGTGACTCCACAAGG+CGG | 0.680695 | 1_3:+46790965 | Msa0121210:CDS |
| CCAAAATCGACCTGACCATG+GGG | 0.685201 | 1_3:-46790756 | None:intergenic |
| ACCGGATGCTCAAACAACAA+CGG | 0.694391 | 1_3:+46790785 | Msa0121210:CDS |
| TTTCTACGATGTGAGCAACG+TGG | 0.737287 | 1_3:+46790925 | Msa0121210:CDS |
| TCGTGGAAGTTACAACACCG+AGG | 0.789168 | 1_3:+46791129 | Msa0121210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGTTTTTAGAAA+GGG | - | chr1_3:46789959-46789978 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTTTTAGAA+AGG | - | chr1_3:46789960-46789979 | None:intergenic | 10.0% |
| !! | TATATATGATTAAAACATTT+AGG | - | chr1_3:46790514-46790533 | None:intergenic | 10.0% |
| !!! | TTGTATTGTTATTTTTTTTA+AGG | + | chr1_3:46791457-46791476 | Msa0121210:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTGTTTTTAGAAA+GGG | - | chr1_3:46789959-46789978 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTTTTAGAA+AGG | - | chr1_3:46789960-46789979 | None:intergenic | 10.0% |
| !! | TATATATGATTAAAACATTT+AGG | - | chr1_3:46790514-46790533 | None:intergenic | 10.0% |
| !!! | TTGTATTGTTATTTTTTTTA+AGG | + | chr1_3:46791457-46791476 | Msa0121210:three_prime_UTR | 10.0% |
| !! | AAATGAATTCATTAAGCTTA+TGG | - | chr1_3:46789697-46789716 | None:intergenic | 20.0% |
| !! | GGTTTACATACAATAAATAT+GGG | - | chr1_3:46789843-46789862 | None:intergenic | 20.0% |
| !! | TGGTTTACATACAATAAATA+TGG | - | chr1_3:46789844-46789863 | None:intergenic | 20.0% |
| !!! | TTATTTTTAACCATATGAAG+AGG | - | chr1_3:46789909-46789928 | None:intergenic | 20.0% |
| !! | AAAATGTGATAAAGAAAACA+AGG | - | chr1_3:46790052-46790071 | None:intergenic | 20.0% |
| !!! | TTATCACATTTTTTTCTTGT+AGG | + | chr1_3:46790060-46790079 | Msa0121210:intron | 20.0% |
| !!! | TTTTTTGCAAATTTCTTCAA+AGG | - | chr1_3:46790260-46790279 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTGTGAATGCT+CGG | + | chr1_3:46790401-46790420 | Msa0121210:intron | 20.0% |
| !! | AATTATTTAATACACCATTG+AGG | + | chr1_3:46790471-46790490 | Msa0121210:intron | 20.0% |
| !! | TGATATTTCATACTTATTTG+TGG | - | chr1_3:46791391-46791410 | None:intergenic | 20.0% |
| !! | AAATGAATTCATTAAGCTTA+TGG | - | chr1_3:46789697-46789716 | None:intergenic | 20.0% |
| !! | GGTTTACATACAATAAATAT+GGG | - | chr1_3:46789843-46789862 | None:intergenic | 20.0% |
| !! | TGGTTTACATACAATAAATA+TGG | - | chr1_3:46789844-46789863 | None:intergenic | 20.0% |
| !!! | TTATTTTTAACCATATGAAG+AGG | - | chr1_3:46789909-46789928 | None:intergenic | 20.0% |
| !! | AAAATGTGATAAAGAAAACA+AGG | - | chr1_3:46790052-46790071 | None:intergenic | 20.0% |
| !!! | TTATCACATTTTTTTCTTGT+AGG | + | chr1_3:46790060-46790079 | Msa0121210:intron | 20.0% |
| !!! | TTTTTTGCAAATTTCTTCAA+AGG | - | chr1_3:46790260-46790279 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTGTGAATGCT+CGG | + | chr1_3:46790401-46790420 | Msa0121210:intron | 20.0% |
| !! | AATTATTTAATACACCATTG+AGG | + | chr1_3:46790471-46790490 | Msa0121210:intron | 20.0% |
| !! | TGATATTTCATACTTATTTG+TGG | - | chr1_3:46791391-46791410 | None:intergenic | 20.0% |
| !!! | TCGTTATTGGTTTATCTTTT+TGG | - | chr1_3:46789588-46789607 | None:intergenic | 25.0% |
| ! | ATAAACCAATAACGAGAATA+TGG | + | chr1_3:46789593-46789612 | Msa0121210:exon | 25.0% |
| ! | AATGAAATATACCATAGAAG+AGG | - | chr1_3:46789656-46789675 | None:intergenic | 25.0% |
| ! | TGTAGGTATCTAAATACTAT+CGG | + | chr1_3:46790077-46790096 | Msa0121210:intron | 25.0% |
| !!! | CGCTATCTTTAAAGAATTTT+AGG | - | chr1_3:46790362-46790381 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTGAATGCTC+GGG | + | chr1_3:46790402-46790421 | Msa0121210:intron | 25.0% |
| !! | TAGAAGGTATAGTTCAATTA+GGG | - | chr1_3:46791286-46791305 | None:intergenic | 25.0% |
| !! | ATAGAAGGTATAGTTCAATT+AGG | - | chr1_3:46791287-46791306 | None:intergenic | 25.0% |
| ! | AGACATAACTGTATTATAGA+AGG | - | chr1_3:46791302-46791321 | None:intergenic | 25.0% |
| !! | CTCTGTGTTTAAAATAAAAC+AGG | + | chr1_3:46791320-46791339 | Msa0121210:three_prime_UTR | 25.0% |
| !! | TGTGTTTAAAATAAAACAGG+TGG | + | chr1_3:46791323-46791342 | Msa0121210:three_prime_UTR | 25.0% |
| !!! | TCGTTATTGGTTTATCTTTT+TGG | - | chr1_3:46789588-46789607 | None:intergenic | 25.0% |
| ! | ATAAACCAATAACGAGAATA+TGG | + | chr1_3:46789593-46789612 | Msa0121210:exon | 25.0% |
| ! | AATGAAATATACCATAGAAG+AGG | - | chr1_3:46789656-46789675 | None:intergenic | 25.0% |
| ! | TGTAGGTATCTAAATACTAT+CGG | + | chr1_3:46790077-46790096 | Msa0121210:intron | 25.0% |
| !!! | CGCTATCTTTAAAGAATTTT+AGG | - | chr1_3:46790362-46790381 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTGAATGCTC+GGG | + | chr1_3:46790402-46790421 | Msa0121210:intron | 25.0% |
| !! | TAGAAGGTATAGTTCAATTA+GGG | - | chr1_3:46791286-46791305 | None:intergenic | 25.0% |
| !! | ATAGAAGGTATAGTTCAATT+AGG | - | chr1_3:46791287-46791306 | None:intergenic | 25.0% |
| ! | AGACATAACTGTATTATAGA+AGG | - | chr1_3:46791302-46791321 | None:intergenic | 25.0% |
| !! | CTCTGTGTTTAAAATAAAAC+AGG | + | chr1_3:46791320-46791339 | Msa0121210:three_prime_UTR | 25.0% |
| !! | TGTGTTTAAAATAAAACAGG+TGG | + | chr1_3:46791323-46791342 | Msa0121210:three_prime_UTR | 25.0% |
| TAAGCTTATGGAAAATGTAG+TGG | - | chr1_3:46789685-46789704 | None:intergenic | 30.0% | |
| CCAACAATCATTATTCAAAG+AGG | - | chr1_3:46789735-46789754 | None:intergenic | 30.0% | |
| CCTCTTTGAATAATGATTGT+TGG | + | chr1_3:46789732-46789751 | Msa0121210:intron | 30.0% | |
| AATGTCCACAATTCATTTGT+GGG | - | chr1_3:46789782-46789801 | None:intergenic | 30.0% | |
| TTGCAAATTTCTTCAAAGGT+AGG | - | chr1_3:46790256-46790275 | None:intergenic | 30.0% | |
| CACATGTGTAAATTAACAAC+GGG | - | chr1_3:46790309-46790328 | None:intergenic | 30.0% | |
| CCACATGTGTAAATTAACAA+CGG | - | chr1_3:46790310-46790329 | None:intergenic | 30.0% | |
| TTAATCTTCAAACACCTCAA+TGG | - | chr1_3:46790488-46790507 | None:intergenic | 30.0% | |
| ! | TAATTTTTGTATGCAGCTGT+TGG | + | chr1_3:46790596-46790615 | Msa0121210:intron | 30.0% |
| !!! | ATCAACAACAGGTTTTGAAT+TGG | + | chr1_3:46790700-46790719 | Msa0121210:CDS | 30.0% |
| !!! | TCAACAACAGGTTTTGAATT+GGG | + | chr1_3:46790701-46790720 | Msa0121210:CDS | 30.0% |
| AGAGCTTCAATTAAAAGGTT+CGG | + | chr1_3:46791045-46791064 | Msa0121210:CDS | 30.0% | |
| TTCAATTAAAAGGTTCGGAT+GGG | + | chr1_3:46791050-46791069 | Msa0121210:CDS | 30.0% | |
| ! | AATATCTCGGAGTAATTTGT+GGG | - | chr1_3:46791166-46791185 | None:intergenic | 30.0% |
| AAATATCTCGGAGTAATTTG+TGG | - | chr1_3:46791167-46791186 | None:intergenic | 30.0% | |
| !! | ACATTGGTTCTCAAATATCT+CGG | - | chr1_3:46791179-46791198 | None:intergenic | 30.0% |
| ! | GTATGTTTTCGATTACTACA+TGG | + | chr1_3:46791414-46791433 | Msa0121210:three_prime_UTR | 30.0% |
| TAAGCTTATGGAAAATGTAG+TGG | - | chr1_3:46789685-46789704 | None:intergenic | 30.0% | |
| CCAACAATCATTATTCAAAG+AGG | - | chr1_3:46789735-46789754 | None:intergenic | 30.0% | |
| CCTCTTTGAATAATGATTGT+TGG | + | chr1_3:46789732-46789751 | Msa0121210:intron | 30.0% | |
| AATGTCCACAATTCATTTGT+GGG | - | chr1_3:46789782-46789801 | None:intergenic | 30.0% | |
| TTGCAAATTTCTTCAAAGGT+AGG | - | chr1_3:46790256-46790275 | None:intergenic | 30.0% | |
| CACATGTGTAAATTAACAAC+GGG | - | chr1_3:46790309-46790328 | None:intergenic | 30.0% | |
| CCACATGTGTAAATTAACAA+CGG | - | chr1_3:46790310-46790329 | None:intergenic | 30.0% | |
| TTAATCTTCAAACACCTCAA+TGG | - | chr1_3:46790488-46790507 | None:intergenic | 30.0% | |
| ! | TAATTTTTGTATGCAGCTGT+TGG | + | chr1_3:46790596-46790615 | Msa0121210:intron | 30.0% |
| !!! | ATCAACAACAGGTTTTGAAT+TGG | + | chr1_3:46790700-46790719 | Msa0121210:CDS | 30.0% |
| !!! | TCAACAACAGGTTTTGAATT+GGG | + | chr1_3:46790701-46790720 | Msa0121210:CDS | 30.0% |
| AGAGCTTCAATTAAAAGGTT+CGG | + | chr1_3:46791045-46791064 | Msa0121210:CDS | 30.0% | |
| TTCAATTAAAAGGTTCGGAT+GGG | + | chr1_3:46791050-46791069 | Msa0121210:CDS | 30.0% | |
| ! | AATATCTCGGAGTAATTTGT+GGG | - | chr1_3:46791166-46791185 | None:intergenic | 30.0% |
| AAATATCTCGGAGTAATTTG+TGG | - | chr1_3:46791167-46791186 | None:intergenic | 30.0% | |
| !! | ACATTGGTTCTCAAATATCT+CGG | - | chr1_3:46791179-46791198 | None:intergenic | 30.0% |
| ! | GTATGTTTTCGATTACTACA+TGG | + | chr1_3:46791414-46791433 | Msa0121210:three_prime_UTR | 30.0% |
| AATCGCCATATTCTCGTTAT+TGG | - | chr1_3:46789601-46789620 | None:intergenic | 35.0% | |
| ATGTCCACAATTCATTTGTG+GGG | - | chr1_3:46789781-46789800 | None:intergenic | 35.0% | |
| CAATGTCCACAATTCATTTG+TGG | - | chr1_3:46789783-46789802 | None:intergenic | 35.0% | |
| CACAAATGAATTGTGGACAT+TGG | + | chr1_3:46789781-46789800 | Msa0121210:intron | 35.0% | |
| ACACATCGACATGTAAAAAG+TGG | - | chr1_3:46789864-46789883 | None:intergenic | 35.0% | |
| CATTTCTCTTCCTCTTCATA+TGG | + | chr1_3:46789896-46789915 | Msa0121210:intron | 35.0% | |
| CCGTTGTTAATTTACACATG+TGG | + | chr1_3:46790307-46790326 | Msa0121210:intron | 35.0% | |
| ATCAACTGAGCTAAGTTCAT+GGG | + | chr1_3:46790436-46790455 | Msa0121210:intron | 35.0% | |
| ! | TCTATTCGTGAATGTCACTT+GGG | - | chr1_3:46790627-46790646 | None:intergenic | 35.0% |
| ATCTATTCGTGAATGTCACT+TGG | - | chr1_3:46790628-46790647 | None:intergenic | 35.0% | |
| ATAGATGTGGATACACTGTA+TGG | + | chr1_3:46790642-46790661 | Msa0121210:CDS | 35.0% | |
| !! | AAACCTGTTGTTGATAGTTG+AGG | - | chr1_3:46790695-46790714 | None:intergenic | 35.0% |
| GTAATTTCAACCAAAGTTGC+TGG | - | chr1_3:46790881-46790900 | None:intergenic | 35.0% | |
| AACTTTGGTTGAAATTACCG+TGG | + | chr1_3:46790883-46790902 | Msa0121210:CDS | 35.0% | |
| !! | ACCTTTTAATTGAAGCTCTG+CGG | - | chr1_3:46791044-46791063 | None:intergenic | 35.0% |
| CTTCAATTAAAAGGTTCGGA+TGG | + | chr1_3:46791049-46791068 | Msa0121210:CDS | 35.0% | |
| TCCACGACAACAATATTGAT+CGG | - | chr1_3:46791116-46791135 | None:intergenic | 35.0% | |
| AATCGCCATATTCTCGTTAT+TGG | - | chr1_3:46789601-46789620 | None:intergenic | 35.0% | |
| ATGTCCACAATTCATTTGTG+GGG | - | chr1_3:46789781-46789800 | None:intergenic | 35.0% | |
| CAATGTCCACAATTCATTTG+TGG | - | chr1_3:46789783-46789802 | None:intergenic | 35.0% | |
| CACAAATGAATTGTGGACAT+TGG | + | chr1_3:46789781-46789800 | Msa0121210:intron | 35.0% | |
| ACACATCGACATGTAAAAAG+TGG | - | chr1_3:46789864-46789883 | None:intergenic | 35.0% | |
| CATTTCTCTTCCTCTTCATA+TGG | + | chr1_3:46789896-46789915 | Msa0121210:intron | 35.0% | |
| CCGTTGTTAATTTACACATG+TGG | + | chr1_3:46790307-46790326 | Msa0121210:intron | 35.0% | |
| ATCAACTGAGCTAAGTTCAT+GGG | + | chr1_3:46790436-46790455 | Msa0121210:intron | 35.0% | |
| ! | TCTATTCGTGAATGTCACTT+GGG | - | chr1_3:46790627-46790646 | None:intergenic | 35.0% |
| ATCTATTCGTGAATGTCACT+TGG | - | chr1_3:46790628-46790647 | None:intergenic | 35.0% | |
| ATAGATGTGGATACACTGTA+TGG | + | chr1_3:46790642-46790661 | Msa0121210:CDS | 35.0% | |
| !! | AAACCTGTTGTTGATAGTTG+AGG | - | chr1_3:46790695-46790714 | None:intergenic | 35.0% |
| GTAATTTCAACCAAAGTTGC+TGG | - | chr1_3:46790881-46790900 | None:intergenic | 35.0% | |
| AACTTTGGTTGAAATTACCG+TGG | + | chr1_3:46790883-46790902 | Msa0121210:CDS | 35.0% | |
| !! | ACCTTTTAATTGAAGCTCTG+CGG | - | chr1_3:46791044-46791063 | None:intergenic | 35.0% |
| CTTCAATTAAAAGGTTCGGA+TGG | + | chr1_3:46791049-46791068 | Msa0121210:CDS | 35.0% | |
| TCCACGACAACAATATTGAT+CGG | - | chr1_3:46791116-46791135 | None:intergenic | 35.0% | |
| AGAAGAGGAATGCAAAGCTA+AGG | - | chr1_3:46789641-46789660 | None:intergenic | 40.0% | |
| AGCTTTGCATTCCTCTTCTA+TGG | + | chr1_3:46789642-46789661 | Msa0121210:CDS | 40.0% | |
| ACAACCCCACAAATGAATTG+TGG | + | chr1_3:46789774-46789793 | Msa0121210:intron | 40.0% | |
| CATGAACTTAGCTCAGTTGA+TGG | - | chr1_3:46790437-46790456 | None:intergenic | 40.0% | |
| CATCAACTGAGCTAAGTTCA+TGG | + | chr1_3:46790435-46790454 | Msa0121210:intron | 40.0% | |
| ! | TTTTTGTATGCAGCTGTTGG+AGG | + | chr1_3:46790599-46790618 | Msa0121210:intron | 40.0% |
| GTGACATTCACGAATAGATG+TGG | + | chr1_3:46790629-46790648 | Msa0121210:CDS | 40.0% | |
| ! | TAGTTGAGGCTTTTGATCTC+CGG | - | chr1_3:46790681-46790700 | None:intergenic | 40.0% |
| AAGCCTCAACTATCAACAAC+AGG | + | chr1_3:46790689-46790708 | Msa0121210:CDS | 40.0% | |
| !!! | ACAGGTTTTGAATTGGGACA+AGG | + | chr1_3:46790707-46790726 | Msa0121210:CDS | 40.0% |
| TTTCAACCAAAGTTGCTGGT+GGG | - | chr1_3:46790877-46790896 | None:intergenic | 40.0% | |
| ATTTCAACCAAAGTTGCTGG+TGG | - | chr1_3:46790878-46790897 | None:intergenic | 40.0% | |
| GAAATTACCGTGGCATCAAA+TGG | + | chr1_3:46790893-46790912 | Msa0121210:CDS | 40.0% | |
| ! | GATATTTGCTGGACAACTAG+AGG | - | chr1_3:46791008-46791027 | None:intergenic | 40.0% |
| !! | CACACAGAGTTGATATTTGC+TGG | - | chr1_3:46791019-46791038 | None:intergenic | 40.0% |
| !! | CCTTTTAATTGAAGCTCTGC+GGG | - | chr1_3:46791043-46791062 | None:intergenic | 40.0% |
| !! | TGCTTGTAAGAGTGCTTGTT+TGG | + | chr1_3:46791081-46791100 | Msa0121210:CDS | 40.0% |
| ACCGATCAATATTGTTGTCG+TGG | + | chr1_3:46791112-46791131 | Msa0121210:CDS | 40.0% | |
| AGCTATAAGCTTCTGGACAT+TGG | - | chr1_3:46791195-46791214 | None:intergenic | 40.0% | |
| TAGGCATAGCTATAAGCTTC+TGG | - | chr1_3:46791202-46791221 | None:intergenic | 40.0% | |
| AGCACTTTCACTTGCTCTAA+TGG | + | chr1_3:46791235-46791254 | Msa0121210:CDS | 40.0% | |
| CAATTAGGGACAGAATGTGA+TGG | - | chr1_3:46791272-46791291 | None:intergenic | 40.0% | |
| AGAAGAGGAATGCAAAGCTA+AGG | - | chr1_3:46789641-46789660 | None:intergenic | 40.0% | |
| AGCTTTGCATTCCTCTTCTA+TGG | + | chr1_3:46789642-46789661 | Msa0121210:CDS | 40.0% | |
| ACAACCCCACAAATGAATTG+TGG | + | chr1_3:46789774-46789793 | Msa0121210:intron | 40.0% | |
| CATGAACTTAGCTCAGTTGA+TGG | - | chr1_3:46790437-46790456 | None:intergenic | 40.0% | |
| CATCAACTGAGCTAAGTTCA+TGG | + | chr1_3:46790435-46790454 | Msa0121210:intron | 40.0% | |
| ! | TTTTTGTATGCAGCTGTTGG+AGG | + | chr1_3:46790599-46790618 | Msa0121210:intron | 40.0% |
| GTGACATTCACGAATAGATG+TGG | + | chr1_3:46790629-46790648 | Msa0121210:CDS | 40.0% | |
| ! | TAGTTGAGGCTTTTGATCTC+CGG | - | chr1_3:46790681-46790700 | None:intergenic | 40.0% |
| AAGCCTCAACTATCAACAAC+AGG | + | chr1_3:46790689-46790708 | Msa0121210:CDS | 40.0% | |
| !!! | ACAGGTTTTGAATTGGGACA+AGG | + | chr1_3:46790707-46790726 | Msa0121210:CDS | 40.0% |
| TTTCAACCAAAGTTGCTGGT+GGG | - | chr1_3:46790877-46790896 | None:intergenic | 40.0% | |
| ATTTCAACCAAAGTTGCTGG+TGG | - | chr1_3:46790878-46790897 | None:intergenic | 40.0% | |
| GAAATTACCGTGGCATCAAA+TGG | + | chr1_3:46790893-46790912 | Msa0121210:CDS | 40.0% | |
| ! | GATATTTGCTGGACAACTAG+AGG | - | chr1_3:46791008-46791027 | None:intergenic | 40.0% |
| !! | CACACAGAGTTGATATTTGC+TGG | - | chr1_3:46791019-46791038 | None:intergenic | 40.0% |
| !! | CCTTTTAATTGAAGCTCTGC+GGG | - | chr1_3:46791043-46791062 | None:intergenic | 40.0% |
| !! | TGCTTGTAAGAGTGCTTGTT+TGG | + | chr1_3:46791081-46791100 | Msa0121210:CDS | 40.0% |
| ACCGATCAATATTGTTGTCG+TGG | + | chr1_3:46791112-46791131 | Msa0121210:CDS | 40.0% | |
| AGCTATAAGCTTCTGGACAT+TGG | - | chr1_3:46791195-46791214 | None:intergenic | 40.0% | |
| TAGGCATAGCTATAAGCTTC+TGG | - | chr1_3:46791202-46791221 | None:intergenic | 40.0% | |
| AGCACTTTCACTTGCTCTAA+TGG | + | chr1_3:46791235-46791254 | Msa0121210:CDS | 40.0% | |
| CAATTAGGGACAGAATGTGA+TGG | - | chr1_3:46791272-46791291 | None:intergenic | 40.0% | |
| CACATGTGGCTAATCGTGAT+AGG | + | chr1_3:46790321-46790340 | Msa0121210:intron | 45.0% | |
| ! | AGGCTTTTGATCTCCGGTTA+AGG | - | chr1_3:46790675-46790694 | None:intergenic | 45.0% |
| ACAAGGAGCAACAAGATCAG+TGG | + | chr1_3:46790724-46790743 | Msa0121210:CDS | 45.0% | |
| ! | TGTTGTTTGAGCATCCGGTT+CGG | - | chr1_3:46790784-46790803 | None:intergenic | 45.0% |
| ACCGGATGCTCAAACAACAA+CGG | + | chr1_3:46790785-46790804 | Msa0121210:CDS | 45.0% | |
| !! | TCCGTTGTTGTTTGAGCATC+CGG | - | chr1_3:46790789-46790808 | None:intergenic | 45.0% |
| !! | TCTGGTCAAGTTGAGTGCAA+TGG | + | chr1_3:46790839-46790858 | Msa0121210:CDS | 45.0% |
| ATTACCGTGGCATCAAATGG+AGG | + | chr1_3:46790896-46790915 | Msa0121210:CDS | 45.0% | |
| TTGTCCTCCATTTGATGCCA+CGG | - | chr1_3:46790903-46790922 | None:intergenic | 45.0% | |
| TTTCTACGATGTGAGCAACG+TGG | + | chr1_3:46790925-46790944 | Msa0121210:CDS | 45.0% | |
| CCCGCAGAGCTTCAATTAAA+AGG | + | chr1_3:46791040-46791059 | Msa0121210:CDS | 45.0% | |
| ! | ATCTCGGAGTAATTTGTGGG+TGG | - | chr1_3:46791163-46791182 | None:intergenic | 45.0% |
| ! | AGTGCTGCTCTTATCATCGT+AGG | - | chr1_3:46791221-46791240 | None:intergenic | 45.0% |
| CAGAATGTGATGGCATAGCT+AGG | - | chr1_3:46791262-46791281 | None:intergenic | 45.0% | |
| CACATGTGGCTAATCGTGAT+AGG | + | chr1_3:46790321-46790340 | Msa0121210:intron | 45.0% | |
| ! | AGGCTTTTGATCTCCGGTTA+AGG | - | chr1_3:46790675-46790694 | None:intergenic | 45.0% |
| ACAAGGAGCAACAAGATCAG+TGG | + | chr1_3:46790724-46790743 | Msa0121210:CDS | 45.0% | |
| ! | TGTTGTTTGAGCATCCGGTT+CGG | - | chr1_3:46790784-46790803 | None:intergenic | 45.0% |
| ACCGGATGCTCAAACAACAA+CGG | + | chr1_3:46790785-46790804 | Msa0121210:CDS | 45.0% | |
| !! | TCCGTTGTTGTTTGAGCATC+CGG | - | chr1_3:46790789-46790808 | None:intergenic | 45.0% |
| !! | TCTGGTCAAGTTGAGTGCAA+TGG | + | chr1_3:46790839-46790858 | Msa0121210:CDS | 45.0% |
| ATTACCGTGGCATCAAATGG+AGG | + | chr1_3:46790896-46790915 | Msa0121210:CDS | 45.0% | |
| TTGTCCTCCATTTGATGCCA+CGG | - | chr1_3:46790903-46790922 | None:intergenic | 45.0% | |
| TTTCTACGATGTGAGCAACG+TGG | + | chr1_3:46790925-46790944 | Msa0121210:CDS | 45.0% | |
| CCCGCAGAGCTTCAATTAAA+AGG | + | chr1_3:46791040-46791059 | Msa0121210:CDS | 45.0% | |
| ! | ATCTCGGAGTAATTTGTGGG+TGG | - | chr1_3:46791163-46791182 | None:intergenic | 45.0% |
| ! | AGTGCTGCTCTTATCATCGT+AGG | - | chr1_3:46791221-46791240 | None:intergenic | 45.0% |
| CAGAATGTGATGGCATAGCT+AGG | - | chr1_3:46791262-46791281 | None:intergenic | 45.0% | |
| !! | ACAAAAAAAAAATTAAATTT+AGG | - | chr1_3:46790394-46790413 | None:intergenic | 5.0% |
| !! | ACAAAAAAAAAATTAAATTT+AGG | - | chr1_3:46790394-46790413 | None:intergenic | 5.0% |
| TGTGGATACACTGTATGGCC+AGG | + | chr1_3:46790647-46790666 | Msa0121210:CDS | 50.0% | |
| GTATGGCCAGGAACCTTAAC+CGG | + | chr1_3:46790659-46790678 | Msa0121210:CDS | 50.0% | |
| TGATCTCCGGTTAAGGTTCC+TGG | - | chr1_3:46790668-46790687 | None:intergenic | 50.0% | |
| CCAAAATCGACCTGACCATG+GGG | - | chr1_3:46790759-46790778 | None:intergenic | 50.0% | |
| CCCAAAATCGACCTGACCAT+GGG | - | chr1_3:46790760-46790779 | None:intergenic | 50.0% | |
| !! | CCCATGGTCAGGTCGATTTT+GGG | + | chr1_3:46790757-46790776 | Msa0121210:CDS | 50.0% |
| GTTGTTTGAGCATCCGGTTC+GGG | - | chr1_3:46790783-46790802 | None:intergenic | 50.0% | |
| AACTTGACCAGACGCGCAAT+CGG | - | chr1_3:46790831-46790850 | None:intergenic | 50.0% | |
| ! | CAAGTTGAGTGCAATGGTGC+TGG | + | chr1_3:46790845-46790864 | Msa0121210:CDS | 50.0% |
| TACGATGTGAGCAACGTGGA+CGG | + | chr1_3:46790929-46790948 | Msa0121210:CDS | 50.0% | |
| TCGTGGAAGTTACAACACCG+AGG | + | chr1_3:46791129-46791148 | Msa0121210:CDS | 50.0% | |
| TGTGGATACACTGTATGGCC+AGG | + | chr1_3:46790647-46790666 | Msa0121210:CDS | 50.0% | |
| GTATGGCCAGGAACCTTAAC+CGG | + | chr1_3:46790659-46790678 | Msa0121210:CDS | 50.0% | |
| TGATCTCCGGTTAAGGTTCC+TGG | - | chr1_3:46790668-46790687 | None:intergenic | 50.0% | |
| CCAAAATCGACCTGACCATG+GGG | - | chr1_3:46790759-46790778 | None:intergenic | 50.0% | |
| CCCAAAATCGACCTGACCAT+GGG | - | chr1_3:46790760-46790779 | None:intergenic | 50.0% | |
| !! | CCCATGGTCAGGTCGATTTT+GGG | + | chr1_3:46790757-46790776 | Msa0121210:CDS | 50.0% |
| GTTGTTTGAGCATCCGGTTC+GGG | - | chr1_3:46790783-46790802 | None:intergenic | 50.0% | |
| AACTTGACCAGACGCGCAAT+CGG | - | chr1_3:46790831-46790850 | None:intergenic | 50.0% | |
| ! | CAAGTTGAGTGCAATGGTGC+TGG | + | chr1_3:46790845-46790864 | Msa0121210:CDS | 50.0% |
| TACGATGTGAGCAACGTGGA+CGG | + | chr1_3:46790929-46790948 | Msa0121210:CDS | 50.0% | |
| TCGTGGAAGTTACAACACCG+AGG | + | chr1_3:46791129-46791148 | Msa0121210:CDS | 50.0% | |
| GCTAAGGCAGAGAGCAACAC+TGG | - | chr1_3:46789625-46789644 | None:intergenic | 55.0% | |
| AATCGACCTGACCATGGGGA+AGG | - | chr1_3:46790755-46790774 | None:intergenic | 55.0% | |
| !! | CCCCATGGTCAGGTCGATTT+TGG | + | chr1_3:46790756-46790775 | Msa0121210:CDS | 55.0% |
| GCCCAAAATCGACCTGACCA+TGG | - | chr1_3:46790761-46790780 | None:intergenic | 55.0% | |
| CGCAATCCCACCAGCAACTT+TGG | + | chr1_3:46790868-46790887 | Msa0121210:CDS | 55.0% | |
| CCTTGTGGAGTCACGGACAT+TGG | - | chr1_3:46790965-46790984 | None:intergenic | 55.0% | |
| CCAATGTCCGTGACTCCACA+AGG | + | chr1_3:46790962-46790981 | Msa0121210:CDS | 55.0% | |
| ATGTCCGTGACTCCACAAGG+CGG | + | chr1_3:46790965-46790984 | Msa0121210:CDS | 55.0% | |
| GCTAAGGCAGAGAGCAACAC+TGG | - | chr1_3:46789625-46789644 | None:intergenic | 55.0% | |
| AATCGACCTGACCATGGGGA+AGG | - | chr1_3:46790755-46790774 | None:intergenic | 55.0% | |
| !! | CCCCATGGTCAGGTCGATTT+TGG | + | chr1_3:46790756-46790775 | Msa0121210:CDS | 55.0% |
| GCCCAAAATCGACCTGACCA+TGG | - | chr1_3:46790761-46790780 | None:intergenic | 55.0% | |
| CGCAATCCCACCAGCAACTT+TGG | + | chr1_3:46790868-46790887 | Msa0121210:CDS | 55.0% | |
| CCTTGTGGAGTCACGGACAT+TGG | - | chr1_3:46790965-46790984 | None:intergenic | 55.0% | |
| CCAATGTCCGTGACTCCACA+AGG | + | chr1_3:46790962-46790981 | Msa0121210:CDS | 55.0% | |
| ATGTCCGTGACTCCACAAGG+CGG | + | chr1_3:46790965-46790984 | Msa0121210:CDS | 55.0% | |
| CAGTGGACCTTCCTTCCCCA+TGG | + | chr1_3:46790741-46790760 | Msa0121210:CDS | 60.0% | |
| GACCTTCCTTCCCCATGGTC+AGG | + | chr1_3:46790746-46790765 | Msa0121210:CDS | 60.0% | |
| GACCTGACCATGGGGAAGGA+AGG | - | chr1_3:46790751-46790770 | None:intergenic | 60.0% | |
| !! | GGTCGATTTTGGGCCCGAAC+CGG | + | chr1_3:46790767-46790786 | Msa0121210:CDS | 60.0% |
| TGTCCGTGACTCCACAAGGC+GGG | + | chr1_3:46790966-46790985 | Msa0121210:CDS | 60.0% | |
| ACTCCCGCCTTGTGGAGTCA+CGG | - | chr1_3:46790972-46790991 | None:intergenic | 60.0% | |
| TGTGGGTGGACATGTCGCCT+CGG | - | chr1_3:46791149-46791168 | None:intergenic | 60.0% | |
| CAGTGGACCTTCCTTCCCCA+TGG | + | chr1_3:46790741-46790760 | Msa0121210:CDS | 60.0% | |
| GACCTTCCTTCCCCATGGTC+AGG | + | chr1_3:46790746-46790765 | Msa0121210:CDS | 60.0% | |
| GACCTGACCATGGGGAAGGA+AGG | - | chr1_3:46790751-46790770 | None:intergenic | 60.0% | |
| !! | GGTCGATTTTGGGCCCGAAC+CGG | + | chr1_3:46790767-46790786 | Msa0121210:CDS | 60.0% |
| TGTCCGTGACTCCACAAGGC+GGG | + | chr1_3:46790966-46790985 | Msa0121210:CDS | 60.0% | |
| ACTCCCGCCTTGTGGAGTCA+CGG | - | chr1_3:46790972-46790991 | None:intergenic | 60.0% | |
| TGTGGGTGGACATGTCGCCT+CGG | - | chr1_3:46791149-46791168 | None:intergenic | 60.0% | |
| ACCAGACGCGCAATCGGCTG+TGG | - | chr1_3:46790825-46790844 | None:intergenic | 65.0% | |
| GTGACTCCACAAGGCGGGAG+TGG | + | chr1_3:46790971-46790990 | Msa0121210:CDS | 65.0% | |
| CAATCGCCACTCCCGCCTTG+TGG | - | chr1_3:46790980-46790999 | None:intergenic | 65.0% | |
| ACCAGACGCGCAATCGGCTG+TGG | - | chr1_3:46790825-46790844 | None:intergenic | 65.0% | |
| GTGACTCCACAAGGCGGGAG+TGG | + | chr1_3:46790971-46790990 | Msa0121210:CDS | 65.0% | |
| CAATCGCCACTCCCGCCTTG+TGG | - | chr1_3:46790980-46790999 | None:intergenic | 65.0% | |
| GCCACAGCCGATTGCGCGTC+TGG | + | chr1_3:46790821-46790840 | Msa0121210:CDS | 70.0% | |
| GCCACAGCCGATTGCGCGTC+TGG | + | chr1_3:46790821-46790840 | Msa0121210:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 46789527 | 46791505 | 46789527 | ID=Msa0121210;Name=Msa0121210 |
| chr1_3 | mRNA | 46789527 | 46791505 | 46789527 | ID=Msa0121210-mRNA-1;Parent=Msa0121210;Name=Msa0121210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|1|1|1|1|1|2|217|242 |
| chr1_3 | exon | 46789527 | 46789663 | 46789527 | ID=Msa0121210-mRNA-1:exon:14103;Parent=Msa0121210-mRNA-1 |
| chr1_3 | exon | 46790612 | 46791505 | 46790612 | ID=Msa0121210-mRNA-1:exon:14104;Parent=Msa0121210-mRNA-1 |
| chr1_3 | five_prime_UTR | 46789527 | 46789611 | 46789527 | ID=Msa0121210-mRNA-1:five_prime_utr;Parent=Msa0121210-mRNA-1 |
| chr1_3 | CDS | 46789612 | 46789663 | 46789612 | ID=Msa0121210-mRNA-1:cds;Parent=Msa0121210-mRNA-1 |
| chr1_3 | CDS | 46790612 | 46791288 | 46790612 | ID=Msa0121210-mRNA-1:cds;Parent=Msa0121210-mRNA-1 |
| chr1_3 | three_prime_UTR | 46791289 | 46791505 | 46791289 | ID=Msa0121210-mRNA-1:three_prime_utr;Parent=Msa0121210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
