AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025460 MtrunA17_Chr1g0180121 93.802 242 15 0 1 242 1 242 1.04e-168 464
Msa0025460 MtrunA17_Chr1g0180161 86.364 242 33 0 1 242 1 242 2.08e-154 429
Msa0025460 MtrunA17_Chr1g0180221 85.537 242 35 0 1 242 41 282 2.17e-153 427
Msa0025460 MtrunA17_Chr1g0180231 85.124 242 36 0 1 242 1 242 3.16e-153 426
Msa0025460 MtrunA17_Chr1g0179871 85.124 242 36 0 1 242 1 242 3.16e-153 426
Msa0025460 MtrunA17_Chr1g0179891 82.278 237 42 0 6 242 1 237 1.16e-144 404
Msa0025460 MtrunA17_Chr1g0179851 81.116 233 44 0 10 242 7 239 3.05e-140 392
Msa0025460 MtrunA17_Chr7g0265011 71.967 239 67 0 4 242 49 287 5.55e-131 371
Msa0025460 MtrunA17_Chr2g0312181 61.925 239 89 2 6 242 5 243 1.64e-101 295
Msa0025460 MtrunA17_Chr1g0156711 54.132 242 108 3 3 241 4 245 1.29e-88 265
Msa0025460 MtrunA17_Chr3g0142781 53.061 245 108 4 1 242 9 249 4.44e-83 251
Msa0025460 MtrunA17_Chr4g0037331 55.983 234 93 6 12 241 12 239 1.84e-82 250
Msa0025460 MtrunA17_Chr8g0371781 54.185 227 96 3 22 241 28 253 5.73e-82 247
Msa0025460 MtrunA17_Chr5g0405611 52.101 238 102 7 8 242 80 308 9.00e-80 244
Msa0025460 MtrunA17_Chr8g0357311 51.012 247 110 6 1 242 7 247 6.21e-79 238
Msa0025460 MtrunA17_Chr8g0352471 51.230 244 110 6 3 242 9 247 3.84e-78 238
Msa0025460 MtrunA17_Chr1g0154591 56.561 221 89 6 25 242 16 232 4.17e-77 233
Msa0025460 MtrunA17_Chr5g0405581 50.000 250 112 6 1 242 7 251 8.16e-77 234
Msa0025460 MtrunA17_Chr8g0371771 48.936 235 111 4 8 241 17 243 1.04e-76 234
Msa0025460 MtrunA17_Chr8g0351851 48.936 235 114 5 10 241 6 237 2.31e-76 231
Msa0025460 MtrunA17_Chr4g0037351 51.131 221 103 4 26 242 29 248 7.68e-74 227
Msa0025460 MtrunA17_Chr3g0141341 52.679 224 101 5 21 242 11 231 4.60e-73 222
Msa0025460 MtrunA17_Chr5g0428801 49.383 243 111 6 10 242 10 250 2.58e-71 220
Msa0025460 MtrunA17_Chr2g0311521 46.531 245 115 5 12 242 5 247 1.66e-69 230
Msa0025460 MtrunA17_Chr8g0392961 50.228 219 103 5 26 242 31 245 3.10e-69 213
Msa0025460 MtrunA17_Chr7g0239131 44.898 245 127 6 3 242 1 242 1.52e-68 211
Msa0025460 MtrunA17_Chr6g0482741 46.903 226 114 5 19 242 19 240 2.79e-68 210
Msa0025460 MtrunA17_Chr3g0112091 43.333 240 126 6 10 242 1 237 3.44e-68 210
Msa0025460 MtrunA17_Chr2g0311561 45.726 234 119 5 15 242 1 232 2.56e-66 207
Msa0025460 MtrunA17_Chr6g0452331 43.373 249 131 7 2 242 6 252 1.44e-64 202
Msa0025460 MtrunA17_Chr4g0031221 43.830 235 125 5 12 241 19 251 1.77e-63 198
Msa0025460 MtrunA17_Chr2g0311551 45.614 228 119 4 18 242 19 244 1.92e-63 213
Msa0025460 MtrunA17_Chr5g0424221 46.789 218 105 7 25 241 32 239 1.26e-59 189
Msa0025460 MtrunA17_Chr5g0406771 44.068 177 91 5 10 180 1 175 3.65e-46 151
Msa0025460 MtrunA17_Chr2g0311531 40.000 230 107 10 17 242 20 222 7.61e-46 153
Msa0025460 MtrunA17_Chr2g0311501 43.478 184 94 7 65 242 3 182 7.68e-46 151
Msa0025460 MtrunA17_Chr5g0397821 40.359 223 110 8 22 242 24 225 4.64e-45 151
Msa0025460 MtrunA17_Chr5g0397831 35.857 251 132 9 3 242 4 236 3.80e-43 145
Msa0025460 MtrunA17_Chr2g0309611 34.821 224 139 5 19 240 31 249 3.18e-41 141
Msa0025460 MtrunA17_Chr8g0386341 37.657 239 117 10 8 242 38 248 6.90e-41 140
Msa0025460 MtrunA17_Chr1g0180181 70.787 89 25 1 155 242 11 99 4.06e-39 132
Msa0025460 MtrunA17_Chr1g0179911 33.061 245 139 7 6 242 11 238 1.16e-34 124
Msa0025460 MtrunA17_Chr1g0180171 66.667 69 22 1 8 75 20 88 2.69e-23 90.5
Msa0025460 MtrunA17_Chr8g0386351 34.591 159 89 6 1 153 43 192 1.28e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025460 AT1G20030.1 56.951 223 91 3 25 242 6 228 3.30e-87 261
Msa0025460 AT1G20030.2 56.951 223 91 3 25 242 23 245 3.36e-87 261
Msa0025460 AT1G75800.1 51.210 248 115 4 1 242 1 248 1.68e-84 255
Msa0025460 AT4G38660.1 54.812 239 98 5 8 242 13 245 3.07e-84 254
Msa0025460 AT1G19320.1 53.200 250 104 7 1 241 1 246 2.52e-83 249
Msa0025460 AT4G38660.2 56.054 223 91 4 21 242 7 223 7.75e-83 250
Msa0025460 AT1G75040.1 55.042 238 96 7 8 242 10 239 3.70e-82 246
Msa0025460 AT2G17860.1 50.199 251 114 6 1 242 1 249 1.09e-81 245
Msa0025460 AT4G24180.5 51.172 256 106 6 1 242 1 251 6.14e-80 241
Msa0025460 AT4G24180.2 51.172 256 106 6 1 242 1 251 2.02e-79 241
Msa0025460 AT4G24180.6 52.632 247 100 7 8 242 15 256 5.71e-79 238
Msa0025460 AT4G24180.1 52.632 247 100 7 8 242 15 256 1.86e-78 239
Msa0025460 AT1G75030.1 51.822 247 110 8 1 242 1 243 1.22e-77 234
Msa0025460 AT4G38670.3 48.780 246 120 4 3 242 2 247 1.38e-77 236
Msa0025460 AT4G38670.1 48.780 246 120 4 3 242 2 247 1.38e-77 236
Msa0025460 AT1G75050.1 50.622 241 107 7 10 242 7 243 1.40e-77 234
Msa0025460 AT4G36010.1 51.282 234 105 3 17 242 18 250 5.99e-77 234
Msa0025460 AT4G36010.2 51.282 234 105 3 17 242 18 250 5.99e-77 234
Msa0025460 AT4G38670.2 52.036 221 102 3 26 242 11 231 4.98e-76 231
Msa0025460 AT5G38280.1 49.180 244 113 6 10 242 7 250 3.77e-73 235
Msa0025460 AT5G38280.2 49.180 244 113 6 10 242 7 250 4.39e-73 235
Msa0025460 AT4G24180.4 50.000 240 102 5 1 226 1 236 3.85e-72 223
Msa0025460 AT1G73620.1 50.679 221 103 5 24 242 44 260 1.94e-71 219
Msa0025460 AT4G24180.3 51.515 231 96 6 8 226 15 241 2.79e-71 221
Msa0025460 AT1G18250.2 49.123 228 110 5 17 242 17 240 4.67e-70 215
Msa0025460 AT1G18250.1 50.226 221 104 5 24 242 23 239 1.55e-69 214
Msa0025460 AT5G24620.1 47.984 248 119 6 3 242 6 251 7.41e-68 215
Msa0025460 AT5G24620.4 47.984 248 119 6 3 242 61 306 1.48e-67 216
Msa0025460 AT5G24620.3 47.984 248 119 6 3 242 82 327 2.03e-67 216
Msa0025460 AT5G02140.1 45.570 237 125 4 8 242 7 241 7.17e-65 204
Msa0025460 AT2G28790.1 42.169 249 135 5 1 241 1 248 7.35e-65 202
Msa0025460 AT5G02140.2 45.570 237 125 4 8 242 7 241 8.38e-65 202
Msa0025460 AT2G28790.2 42.169 249 135 5 1 241 26 273 1.04e-64 202
Msa0025460 AT5G40020.1 42.616 237 130 5 10 242 14 248 2.50e-62 196
Msa0025460 AT1G77700.3 46.789 218 105 7 25 241 64 271 6.02e-60 192
Msa0025460 AT1G77700.2 46.789 218 105 7 25 241 64 271 7.06e-60 191
Msa0025460 AT1G77700.1 46.789 218 105 7 25 241 92 299 4.50e-59 191
Msa0025460 AT4G18253.1 39.331 239 136 4 6 242 7 238 5.77e-53 171
Msa0025460 AT1G70250.1 43.172 227 113 8 25 242 148 367 5.41e-51 177
Msa0025460 AT4G18250.1 39.916 238 136 5 6 242 41 272 1.46e-48 170
Msa0025460 AT4G36000.2 53.425 146 60 3 97 242 1 138 4.46e-46 153
Msa0025460 AT4G36000.1 53.425 146 60 3 97 242 1 138 4.46e-46 153
Msa0025460 AT4G11650.1 38.298 235 121 9 10 242 11 223 7.61e-41 140
Msa0025460 AT5G24620.2 54.167 120 48 3 129 242 16 134 7.45e-33 121
Msa0025460 AT2G24810.1 58.228 79 31 2 163 241 116 192 3.11e-23 93.6

Find 77 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATGGTCAGGTCGATTT+TGG 0.053229 1_1:-48544686 Msa0025460:CDS
AACCCTCAAAACTTATAAAT+TGG 0.200517 1_1:-48545871 Msa0025460:five_prime_UTR
AGCTTTGCATTCCTCTTCTA+TGG 0.241574 1_1:-48545749 Msa0025460:intron
AATCGCCATATTCTTGTTAT+TGG 0.267785 1_1:+48545793 None:intergenic
CCCGCAGAGCTTCAATTAAA+AGG 0.268083 1_1:-48544402 Msa0025460:CDS
TGATCTCCGGTTAAGGTTCC+TGG 0.268585 1_1:+48544777 None:intergenic
TTAGAAGGTATAGTTCAATT+AGG 0.280151 1_1:+48544158 None:intergenic
TAGAAGGTATAGTTCAATTA+GGG 0.301329 1_1:+48544159 None:intergenic
TAGGCATAGCTATAAGCTTC+TGG 0.336607 1_1:+48544243 None:intergenic
AGCACTTTCACTTGCTCTAA+TGG 0.354302 1_1:-48544207 Msa0025460:CDS
CACACAGAGTTGATATTTGC+TGG 0.361358 1_1:+48544426 None:intergenic
ATAAACCAATAACAAGAATA+TGG 0.362702 1_1:-48545798 Msa0025460:exon
GCCACAGCCGATTGCGCGTC+TGG 0.381507 1_1:-48544621 Msa0025460:CDS
TGCAATCCCACCAGCAACTT+TGG 0.387031 1_1:-48544574 Msa0025460:CDS
GTTGTTTGAGCATCCCGTTC+GGG 0.400824 1_1:+48544662 None:intergenic
TGCTTGTAAGAGTGCTTGTT+TGG 0.407476 1_1:-48544361 Msa0025460:CDS
GTGTTTAAAATAAATTAAAC+AGG 0.411110 1_1:-48544119 Msa0025460:three_prime_UTR
GTAATTTCAACCAAAGTTGC+TGG 0.422022 1_1:+48544564 None:intergenic
GAGACATAACTGTATTTAGA+AGG 0.425497 1_1:+48544143 None:intergenic
GTATGGCCAGGAACCTTAAC+CGG 0.430415 1_1:-48544783 Msa0025460:CDS
TGATATTTCATACTTATTTG+TGG 0.431329 1_1:+48544051 None:intergenic
TGTTGTTTGAGCATCCCGTT+CGG 0.437948 1_1:+48544661 None:intergenic
GAAATTACCGTGGCATCAAA+TGG 0.464138 1_1:-48544549 Msa0025460:CDS
GACCTTCCTTCCCCATGGTC+AGG 0.467806 1_1:-48544696 Msa0025460:CDS
AAATATCTCGGAGTAATTTG+TGG 0.469027 1_1:+48544278 None:intergenic
AGAGCTTCAATTAAAAGGTT+CGG 0.473590 1_1:-48544397 Msa0025460:CDS
CCCAAAATCGACCTGACCAT+GGG 0.475932 1_1:+48544685 None:intergenic
AACTTGACCAGACGCGCAAT+CGG 0.479141 1_1:+48544614 None:intergenic
GTGACTCCACAAGGCGGGAG+TGG 0.480942 1_1:-48544471 Msa0025460:CDS
ATCTATTCGTGAATGTCACT+TGG 0.490542 1_1:+48544817 None:intergenic
AAGCCTCAACTATCAACAAC+AGG 0.497185 1_1:-48544753 Msa0025460:CDS
ACCAGACGCGCAATCGGCTG+TGG 0.503521 1_1:+48544620 None:intergenic
AATATCTCGGAGTAATTTGT+GGG 0.505487 1_1:+48544279 None:intergenic
CAAGTTGAGTGCAATGGTGC+TGG 0.505724 1_1:-48544597 Msa0025460:CDS
CTTCAATTAAAAGGTTCGGA+TGG 0.512580 1_1:-48544393 Msa0025460:CDS
AGCTATAAGCTTCTGGACAT+TGG 0.513068 1_1:+48544250 None:intergenic
AAACCTGTTGTTGATAGTTG+AGG 0.530022 1_1:+48544750 None:intergenic
CAATCGCCACTCCCGCCTTG+TGG 0.533640 1_1:+48544465 None:intergenic
CAGAATGTGATGGCATAGCT+AGG 0.537085 1_1:+48544183 None:intergenic
TTCAATTAAAAGGTTCGGAT+GGG 0.546771 1_1:-48544392 Msa0025460:CDS
TTGTCCTCCATTTGATGCCA+CGG 0.548889 1_1:+48544542 None:intergenic
TTTAAAATAAATTAAACAGG+TGG 0.551624 1_1:-48544116 Msa0025460:three_prime_UTR
GCCCAAAATCGACCTGACCA+TGG 0.557623 1_1:+48544684 None:intergenic
ATAGATGTGGATACACTGTA+TGG 0.561201 1_1:-48544800 Msa0025460:CDS
ACCGATCAATATTGTTGTCG+TGG 0.565802 1_1:-48544330 Msa0025460:CDS
TGTGGATACACTGTATGGCC+AGG 0.574199 1_1:-48544795 Msa0025460:CDS
TACGATGTGAGCAACGTGGA+CGG 0.575852 1_1:-48544513 Msa0025460:CDS
AGAAGAGGAATGCAAAGCTA+AGG 0.578555 1_1:+48545753 None:intergenic
GATATTTGCTGGACAACTAG+AGG 0.578884 1_1:+48544437 None:intergenic
ATTTCAACCAAAGTTGCTGG+TGG 0.585079 1_1:+48544567 None:intergenic
CCAATGTCTGTGACTCCACA+AGG 0.587289 1_1:-48544480 Msa0025460:CDS
GACCTGACCATGGGGAAGGA+AGG 0.587448 1_1:+48544694 None:intergenic
CCTTGTGGAGTCACAGACAT+TGG 0.588932 1_1:+48544480 None:intergenic
TGTCTGTGACTCCACAAGGC+GGG 0.590620 1_1:-48544476 Msa0025460:CDS
ACATTGGTTCTCAAATATCT+CGG 0.592729 1_1:+48544266 None:intergenic
AATGAAATATACCATAGAAG+AGG 0.595352 1_1:+48545738 None:intergenic
TTTCAACCAAAGTTGCTGGT+GGG 0.596283 1_1:+48544568 None:intergenic
GCTAAGGCAGAGAGCAACAC+GGG 0.598892 1_1:+48545769 None:intergenic
AATCGACCTGACCATGGGGA+AGG 0.604645 1_1:+48544690 None:intergenic
AGTGCTGCTCTTATCATCGT+AGG 0.606860 1_1:+48544224 None:intergenic
TCTATTCGTGAATGTCACTT+GGG 0.612879 1_1:+48544818 None:intergenic
GTGACATTCACGAATAGATG+TGG 0.615333 1_1:-48544813 Msa0025460:CDS
TCCACGACAACAATATTGAT+CGG 0.620824 1_1:+48544329 None:intergenic
CAGTGGACCTTCCTTCCCCA+TGG 0.623305 1_1:-48544701 Msa0025460:CDS
ATCTCGGAGTAATTTGTGGG+TGG 0.627398 1_1:+48544282 None:intergenic
AACTTTGGTTGAAATTACCG+TGG 0.634789 1_1:-48544559 Msa0025460:CDS
TGTGGGTGGACATGTCGCCT+CGG 0.637786 1_1:+48544296 None:intergenic
CAATTAGGGACAGAATGTGA+TGG 0.639803 1_1:+48544173 None:intergenic
ACAAGGAGCAACAAGATCAG+TGG 0.644645 1_1:-48544718 Msa0025460:CDS
TCTGGTCAAGTTGAGTGCAA+TGG 0.646954 1_1:-48544603 Msa0025460:CDS
ATTACCGTGGCATCAAATGG+AGG 0.665292 1_1:-48544546 Msa0025460:CDS
AGCTAAGGCAGAGAGCAACA+CGG 0.665345 1_1:+48545768 None:intergenic
CCAAAATCGACCTGACCATG+GGG 0.685201 1_1:+48544686 None:intergenic
ATGTCTGTGACTCCACAAGG+CGG 0.706299 1_1:-48544477 Msa0025460:CDS
ACGGGATGCTCAAACAACAA+CGG 0.720380 1_1:-48544657 Msa0025460:CDS
TTTCTACGATGTGAGCAACG+TGG 0.737287 1_1:-48544517 Msa0025460:CDS
TCGTGGAAGTTACAACACCG+AGG 0.789168 1_1:-48544313 Msa0025460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGTTTTTAGAAA+GGG + chr1_1:48544437-48544456 None:intergenic 10.0%
!!! TTTTTTTTTTGTTTTTAGAA+AGG + chr1_1:48544438-48544457 None:intergenic 10.0%
!! TATATATGATTAAAACATTT+AGG + chr1_1:48544943-48544962 None:intergenic 10.0%
!!! TTGTATTGTTATTTTTTTTA+AGG - chr1_1:48545887-48545906 Msa0025460:five_prime_UTR 10.0%
!!! TTTTTTTTTGTTTTTAGAAA+GGG + chr1_1:48544437-48544456 None:intergenic 10.0%
!!! TTTTTTTTTTGTTTTTAGAA+AGG + chr1_1:48544438-48544457 None:intergenic 10.0%
!! TATATATGATTAAAACATTT+AGG + chr1_1:48544943-48544962 None:intergenic 10.0%
!!! TTGTATTGTTATTTTTTTTA+AGG - chr1_1:48545887-48545906 Msa0025460:five_prime_UTR 10.0%
!!! ATTTTTTTTTTGTGAATGTT+CGG - chr1_1:48544830-48544849 Msa0025460:CDS 15.0%
!!! GTGTTTAAAATAAATTAAAC+AGG - chr1_1:48545750-48545769 Msa0025460:CDS 15.0%
!!! TTTAAAATAAATTAAACAGG+TGG - chr1_1:48545753-48545772 Msa0025460:CDS 15.0%
!!! ATTTTTTTTTTGTGAATGTT+CGG - chr1_1:48544830-48544849 Msa0025460:CDS 15.0%
!!! GTGTTTAAAATAAATTAAAC+AGG - chr1_1:48545750-48545769 Msa0025460:CDS 15.0%
!!! TTTAAAATAAATTAAACAGG+TGG - chr1_1:48545753-48545772 Msa0025460:CDS 15.0%
!!! TTGTTATTGGTTTATCTTTT+TGG + chr1_1:48544066-48544085 None:intergenic 20.0%
!! ATAAACCAATAACAAGAATA+TGG - chr1_1:48544071-48544090 Msa0025460:three_prime_UTR 20.0%
!! AAATGAATTCATTAAGCTTA+TGG + chr1_1:48544175-48544194 None:intergenic 20.0%
!! GGTTTACATACAATAAATAT+GGG + chr1_1:48544321-48544340 None:intergenic 20.0%
!! TGGTTTACATACAATAAATA+TGG + chr1_1:48544322-48544341 None:intergenic 20.0%
!!! TTATTTTTAACCATATGAAG+AGG + chr1_1:48544387-48544406 None:intergenic 20.0%
!! AAAATGTGATAAAGAAAACA+AGG + chr1_1:48544528-48544547 None:intergenic 20.0%
!!! TTATCACATTTTTTTCTTGT+AGG - chr1_1:48544536-48544555 Msa0025460:CDS 20.0%
!!! TTTTTTGCAAATTTCTTCAA+AGG + chr1_1:48544687-48544706 None:intergenic 20.0%
!!! TTTTTTTTTTGTGAATGTTC+GGG - chr1_1:48544831-48544850 Msa0025460:CDS 20.0%
!! AATTATTTAATACACCATTG+AGG - chr1_1:48544900-48544919 Msa0025460:intron 20.0%
!! TGATATTTCATACTTATTTG+TGG + chr1_1:48545821-48545840 None:intergenic 20.0%
!!! TTGTTATTGGTTTATCTTTT+TGG + chr1_1:48544066-48544085 None:intergenic 20.0%
!! ATAAACCAATAACAAGAATA+TGG - chr1_1:48544071-48544090 Msa0025460:three_prime_UTR 20.0%
!! AAATGAATTCATTAAGCTTA+TGG + chr1_1:48544175-48544194 None:intergenic 20.0%
!! GGTTTACATACAATAAATAT+GGG + chr1_1:48544321-48544340 None:intergenic 20.0%
!! TGGTTTACATACAATAAATA+TGG + chr1_1:48544322-48544341 None:intergenic 20.0%
!!! TTATTTTTAACCATATGAAG+AGG + chr1_1:48544387-48544406 None:intergenic 20.0%
!! AAAATGTGATAAAGAAAACA+AGG + chr1_1:48544528-48544547 None:intergenic 20.0%
!!! TTATCACATTTTTTTCTTGT+AGG - chr1_1:48544536-48544555 Msa0025460:CDS 20.0%
!!! TTTTTTGCAAATTTCTTCAA+AGG + chr1_1:48544687-48544706 None:intergenic 20.0%
!!! TTTTTTTTTTGTGAATGTTC+GGG - chr1_1:48544831-48544850 Msa0025460:CDS 20.0%
!! AATTATTTAATACACCATTG+AGG - chr1_1:48544900-48544919 Msa0025460:intron 20.0%
!! TGATATTTCATACTTATTTG+TGG + chr1_1:48545821-48545840 None:intergenic 20.0%
! AACCCTCAAAACTTATAAAT+TGG - chr1_1:48543998-48544017 Msa0025460:three_prime_UTR 25.0%
!!! TGCCAATTTATAAGTTTTGA+GGG + chr1_1:48544003-48544022 None:intergenic 25.0%
!! TTGCCAATTTATAAGTTTTG+AGG + chr1_1:48544004-48544023 None:intergenic 25.0%
! AATGAAATATACCATAGAAG+AGG + chr1_1:48544134-48544153 None:intergenic 25.0%
! TGTAGGTATCTAAATACTAT+CGG - chr1_1:48544553-48544572 Msa0025460:CDS 25.0%
!!! CGCTATCTTTAAAGAATTTT+AGG + chr1_1:48544791-48544810 None:intergenic 25.0%
!! TAGAAGGTATAGTTCAATTA+GGG + chr1_1:48545713-48545732 None:intergenic 25.0%
!! TTAGAAGGTATAGTTCAATT+AGG + chr1_1:48545714-48545733 None:intergenic 25.0%
! AACCCTCAAAACTTATAAAT+TGG - chr1_1:48543998-48544017 Msa0025460:three_prime_UTR 25.0%
!!! TGCCAATTTATAAGTTTTGA+GGG + chr1_1:48544003-48544022 None:intergenic 25.0%
!! TTGCCAATTTATAAGTTTTG+AGG + chr1_1:48544004-48544023 None:intergenic 25.0%
! AATGAAATATACCATAGAAG+AGG + chr1_1:48544134-48544153 None:intergenic 25.0%
! TGTAGGTATCTAAATACTAT+CGG - chr1_1:48544553-48544572 Msa0025460:CDS 25.0%
!!! CGCTATCTTTAAAGAATTTT+AGG + chr1_1:48544791-48544810 None:intergenic 25.0%
!! TAGAAGGTATAGTTCAATTA+GGG + chr1_1:48545713-48545732 None:intergenic 25.0%
!! TTAGAAGGTATAGTTCAATT+AGG + chr1_1:48545714-48545733 None:intergenic 25.0%
! AATCGCCATATTCTTGTTAT+TGG + chr1_1:48544079-48544098 None:intergenic 30.0%
TAAGCTTATGGAAAATGTAG+TGG + chr1_1:48544163-48544182 None:intergenic 30.0%
CCAACAATCATTATTCAAAG+AGG + chr1_1:48544213-48544232 None:intergenic 30.0%
CCTCTTTGAATAATGATTGT+TGG - chr1_1:48544210-48544229 Msa0025460:CDS 30.0%
AATGTCCACAATTCATTTGT+GGG + chr1_1:48544260-48544279 None:intergenic 30.0%
TTGCAAATTTCTTCAAAGGT+AGG + chr1_1:48544683-48544702 None:intergenic 30.0%
CACATGTGTAAATTAACAAC+GGG + chr1_1:48544738-48544757 None:intergenic 30.0%
CCACATGTGTAAATTAACAA+CGG + chr1_1:48544739-48544758 None:intergenic 30.0%
TTAATCTTCAAACACCTCAA+TGG + chr1_1:48544917-48544936 None:intergenic 30.0%
! TAATTTTTGTATGCAGCTGT+TGG - chr1_1:48545023-48545042 Msa0025460:intron 30.0%
!!! ATCAACAACAGGTTTTGAAT+TGG - chr1_1:48545127-48545146 Msa0025460:intron 30.0%
!!! TCAACAACAGGTTTTGAATT+GGG - chr1_1:48545128-48545147 Msa0025460:intron 30.0%
AGAGCTTCAATTAAAAGGTT+CGG - chr1_1:48545472-48545491 Msa0025460:intron 30.0%
TTCAATTAAAAGGTTCGGAT+GGG - chr1_1:48545477-48545496 Msa0025460:intron 30.0%
! AATATCTCGGAGTAATTTGT+GGG + chr1_1:48545593-48545612 None:intergenic 30.0%
AAATATCTCGGAGTAATTTG+TGG + chr1_1:48545594-48545613 None:intergenic 30.0%
!! ACATTGGTTCTCAAATATCT+CGG + chr1_1:48545606-48545625 None:intergenic 30.0%
GAGACATAACTGTATTTAGA+AGG + chr1_1:48545729-48545748 None:intergenic 30.0%
! GTATGTTTTCGATTACTACA+TGG - chr1_1:48545844-48545863 Msa0025460:five_prime_UTR 30.0%
! AATCGCCATATTCTTGTTAT+TGG + chr1_1:48544079-48544098 None:intergenic 30.0%
TAAGCTTATGGAAAATGTAG+TGG + chr1_1:48544163-48544182 None:intergenic 30.0%
CCAACAATCATTATTCAAAG+AGG + chr1_1:48544213-48544232 None:intergenic 30.0%
CCTCTTTGAATAATGATTGT+TGG - chr1_1:48544210-48544229 Msa0025460:CDS 30.0%
AATGTCCACAATTCATTTGT+GGG + chr1_1:48544260-48544279 None:intergenic 30.0%
TTGCAAATTTCTTCAAAGGT+AGG + chr1_1:48544683-48544702 None:intergenic 30.0%
CACATGTGTAAATTAACAAC+GGG + chr1_1:48544738-48544757 None:intergenic 30.0%
CCACATGTGTAAATTAACAA+CGG + chr1_1:48544739-48544758 None:intergenic 30.0%
TTAATCTTCAAACACCTCAA+TGG + chr1_1:48544917-48544936 None:intergenic 30.0%
! TAATTTTTGTATGCAGCTGT+TGG - chr1_1:48545023-48545042 Msa0025460:intron 30.0%
!!! ATCAACAACAGGTTTTGAAT+TGG - chr1_1:48545127-48545146 Msa0025460:intron 30.0%
!!! TCAACAACAGGTTTTGAATT+GGG - chr1_1:48545128-48545147 Msa0025460:intron 30.0%
AGAGCTTCAATTAAAAGGTT+CGG - chr1_1:48545472-48545491 Msa0025460:intron 30.0%
TTCAATTAAAAGGTTCGGAT+GGG - chr1_1:48545477-48545496 Msa0025460:intron 30.0%
! AATATCTCGGAGTAATTTGT+GGG + chr1_1:48545593-48545612 None:intergenic 30.0%
AAATATCTCGGAGTAATTTG+TGG + chr1_1:48545594-48545613 None:intergenic 30.0%
!! ACATTGGTTCTCAAATATCT+CGG + chr1_1:48545606-48545625 None:intergenic 30.0%
GAGACATAACTGTATTTAGA+AGG + chr1_1:48545729-48545748 None:intergenic 30.0%
! GTATGTTTTCGATTACTACA+TGG - chr1_1:48545844-48545863 Msa0025460:five_prime_UTR 30.0%
ATGTCCACAATTCATTTGTG+GGG + chr1_1:48544259-48544278 None:intergenic 35.0%
CAATGTCCACAATTCATTTG+TGG + chr1_1:48544261-48544280 None:intergenic 35.0%
CACAAATGAATTGTGGACAT+TGG - chr1_1:48544259-48544278 Msa0025460:CDS 35.0%
ACACATCGACATGTAAAAAG+TGG + chr1_1:48544342-48544361 None:intergenic 35.0%
CATTTCTCTTCCTCTTCATA+TGG - chr1_1:48544374-48544393 Msa0025460:CDS 35.0%
CCGTTGTTAATTTACACATG+TGG - chr1_1:48544736-48544755 Msa0025460:CDS 35.0%
! TCTATTCGTGAATGTCACTT+GGG + chr1_1:48545054-48545073 None:intergenic 35.0%
ATCTATTCGTGAATGTCACT+TGG + chr1_1:48545055-48545074 None:intergenic 35.0%
ATAGATGTGGATACACTGTA+TGG - chr1_1:48545069-48545088 Msa0025460:intron 35.0%
!! AAACCTGTTGTTGATAGTTG+AGG + chr1_1:48545122-48545141 None:intergenic 35.0%
GTAATTTCAACCAAAGTTGC+TGG + chr1_1:48545308-48545327 None:intergenic 35.0%
AACTTTGGTTGAAATTACCG+TGG - chr1_1:48545310-48545329 Msa0025460:intron 35.0%
!! ACCTTTTAATTGAAGCTCTG+CGG + chr1_1:48545471-48545490 None:intergenic 35.0%
CTTCAATTAAAAGGTTCGGA+TGG - chr1_1:48545476-48545495 Msa0025460:intron 35.0%
TCCACGACAACAATATTGAT+CGG + chr1_1:48545543-48545562 None:intergenic 35.0%
ATGTCCACAATTCATTTGTG+GGG + chr1_1:48544259-48544278 None:intergenic 35.0%
CAATGTCCACAATTCATTTG+TGG + chr1_1:48544261-48544280 None:intergenic 35.0%
CACAAATGAATTGTGGACAT+TGG - chr1_1:48544259-48544278 Msa0025460:CDS 35.0%
ACACATCGACATGTAAAAAG+TGG + chr1_1:48544342-48544361 None:intergenic 35.0%
CATTTCTCTTCCTCTTCATA+TGG - chr1_1:48544374-48544393 Msa0025460:CDS 35.0%
CCGTTGTTAATTTACACATG+TGG - chr1_1:48544736-48544755 Msa0025460:CDS 35.0%
! TCTATTCGTGAATGTCACTT+GGG + chr1_1:48545054-48545073 None:intergenic 35.0%
ATCTATTCGTGAATGTCACT+TGG + chr1_1:48545055-48545074 None:intergenic 35.0%
ATAGATGTGGATACACTGTA+TGG - chr1_1:48545069-48545088 Msa0025460:intron 35.0%
!! AAACCTGTTGTTGATAGTTG+AGG + chr1_1:48545122-48545141 None:intergenic 35.0%
GTAATTTCAACCAAAGTTGC+TGG + chr1_1:48545308-48545327 None:intergenic 35.0%
AACTTTGGTTGAAATTACCG+TGG - chr1_1:48545310-48545329 Msa0025460:intron 35.0%
!! ACCTTTTAATTGAAGCTCTG+CGG + chr1_1:48545471-48545490 None:intergenic 35.0%
CTTCAATTAAAAGGTTCGGA+TGG - chr1_1:48545476-48545495 Msa0025460:intron 35.0%
TCCACGACAACAATATTGAT+CGG + chr1_1:48545543-48545562 None:intergenic 35.0%
AGAAGAGGAATGCAAAGCTA+AGG + chr1_1:48544119-48544138 None:intergenic 40.0%
AGCTTTGCATTCCTCTTCTA+TGG - chr1_1:48544120-48544139 Msa0025460:three_prime_UTR 40.0%
ACAACCCCACAAATGAATTG+TGG - chr1_1:48544252-48544271 Msa0025460:CDS 40.0%
ATCAACTGAGCTAAGCTCAT+GGG - chr1_1:48544865-48544884 Msa0025460:intron 40.0%
! TTTTTGTATGCAGCTGTTGG+AGG - chr1_1:48545026-48545045 Msa0025460:intron 40.0%
GTGACATTCACGAATAGATG+TGG - chr1_1:48545056-48545075 Msa0025460:intron 40.0%
! TAGTTGAGGCTTTTGATCTC+CGG + chr1_1:48545108-48545127 None:intergenic 40.0%
AAGCCTCAACTATCAACAAC+AGG - chr1_1:48545116-48545135 Msa0025460:intron 40.0%
!!! ACAGGTTTTGAATTGGGACA+AGG - chr1_1:48545134-48545153 Msa0025460:intron 40.0%
TTTCAACCAAAGTTGCTGGT+GGG + chr1_1:48545304-48545323 None:intergenic 40.0%
ATTTCAACCAAAGTTGCTGG+TGG + chr1_1:48545305-48545324 None:intergenic 40.0%
GAAATTACCGTGGCATCAAA+TGG - chr1_1:48545320-48545339 Msa0025460:intron 40.0%
! GATATTTGCTGGACAACTAG+AGG + chr1_1:48545435-48545454 None:intergenic 40.0%
!! CACACAGAGTTGATATTTGC+TGG + chr1_1:48545446-48545465 None:intergenic 40.0%
!! CCTTTTAATTGAAGCTCTGC+GGG + chr1_1:48545470-48545489 None:intergenic 40.0%
!! TGCTTGTAAGAGTGCTTGTT+TGG - chr1_1:48545508-48545527 Msa0025460:intron 40.0%
ACCGATCAATATTGTTGTCG+TGG - chr1_1:48545539-48545558 Msa0025460:intron 40.0%
AGCTATAAGCTTCTGGACAT+TGG + chr1_1:48545622-48545641 None:intergenic 40.0%
TAGGCATAGCTATAAGCTTC+TGG + chr1_1:48545629-48545648 None:intergenic 40.0%
AGCACTTTCACTTGCTCTAA+TGG - chr1_1:48545662-48545681 Msa0025460:intron 40.0%
CAATTAGGGACAGAATGTGA+TGG + chr1_1:48545699-48545718 None:intergenic 40.0%
AGAAGAGGAATGCAAAGCTA+AGG + chr1_1:48544119-48544138 None:intergenic 40.0%
AGCTTTGCATTCCTCTTCTA+TGG - chr1_1:48544120-48544139 Msa0025460:three_prime_UTR 40.0%
ACAACCCCACAAATGAATTG+TGG - chr1_1:48544252-48544271 Msa0025460:CDS 40.0%
ATCAACTGAGCTAAGCTCAT+GGG - chr1_1:48544865-48544884 Msa0025460:intron 40.0%
! TTTTTGTATGCAGCTGTTGG+AGG - chr1_1:48545026-48545045 Msa0025460:intron 40.0%
GTGACATTCACGAATAGATG+TGG - chr1_1:48545056-48545075 Msa0025460:intron 40.0%
! TAGTTGAGGCTTTTGATCTC+CGG + chr1_1:48545108-48545127 None:intergenic 40.0%
AAGCCTCAACTATCAACAAC+AGG - chr1_1:48545116-48545135 Msa0025460:intron 40.0%
!!! ACAGGTTTTGAATTGGGACA+AGG - chr1_1:48545134-48545153 Msa0025460:intron 40.0%
TTTCAACCAAAGTTGCTGGT+GGG + chr1_1:48545304-48545323 None:intergenic 40.0%
ATTTCAACCAAAGTTGCTGG+TGG + chr1_1:48545305-48545324 None:intergenic 40.0%
GAAATTACCGTGGCATCAAA+TGG - chr1_1:48545320-48545339 Msa0025460:intron 40.0%
! GATATTTGCTGGACAACTAG+AGG + chr1_1:48545435-48545454 None:intergenic 40.0%
!! CACACAGAGTTGATATTTGC+TGG + chr1_1:48545446-48545465 None:intergenic 40.0%
!! CCTTTTAATTGAAGCTCTGC+GGG + chr1_1:48545470-48545489 None:intergenic 40.0%
!! TGCTTGTAAGAGTGCTTGTT+TGG - chr1_1:48545508-48545527 Msa0025460:intron 40.0%
ACCGATCAATATTGTTGTCG+TGG - chr1_1:48545539-48545558 Msa0025460:intron 40.0%
AGCTATAAGCTTCTGGACAT+TGG + chr1_1:48545622-48545641 None:intergenic 40.0%
TAGGCATAGCTATAAGCTTC+TGG + chr1_1:48545629-48545648 None:intergenic 40.0%
AGCACTTTCACTTGCTCTAA+TGG - chr1_1:48545662-48545681 Msa0025460:intron 40.0%
CAATTAGGGACAGAATGTGA+TGG + chr1_1:48545699-48545718 None:intergenic 40.0%
CACATGTGGCTAATCGTGAT+AGG - chr1_1:48544750-48544769 Msa0025460:CDS 45.0%
CATGAGCTTAGCTCAGTTGA+TGG + chr1_1:48544866-48544885 None:intergenic 45.0%
CATCAACTGAGCTAAGCTCA+TGG - chr1_1:48544864-48544883 Msa0025460:intron 45.0%
! AGGCTTTTGATCTCCGGTTA+AGG + chr1_1:48545102-48545121 None:intergenic 45.0%
ACAAGGAGCAACAAGATCAG+TGG - chr1_1:48545151-48545170 Msa0025460:intron 45.0%
! TGTTGTTTGAGCATCCCGTT+CGG + chr1_1:48545211-48545230 None:intergenic 45.0%
ACGGGATGCTCAAACAACAA+CGG - chr1_1:48545212-48545231 Msa0025460:intron 45.0%
!! TCTGGTCAAGTTGAGTGCAA+TGG - chr1_1:48545266-48545285 Msa0025460:intron 45.0%
ATTACCGTGGCATCAAATGG+AGG - chr1_1:48545323-48545342 Msa0025460:intron 45.0%
TTGTCCTCCATTTGATGCCA+CGG + chr1_1:48545330-48545349 None:intergenic 45.0%
TTTCTACGATGTGAGCAACG+TGG - chr1_1:48545352-48545371 Msa0025460:intron 45.0%
CCCGCAGAGCTTCAATTAAA+AGG - chr1_1:48545467-48545486 Msa0025460:intron 45.0%
! ATCTCGGAGTAATTTGTGGG+TGG + chr1_1:48545590-48545609 None:intergenic 45.0%
! AGTGCTGCTCTTATCATCGT+AGG + chr1_1:48545648-48545667 None:intergenic 45.0%
CAGAATGTGATGGCATAGCT+AGG + chr1_1:48545689-48545708 None:intergenic 45.0%
CACATGTGGCTAATCGTGAT+AGG - chr1_1:48544750-48544769 Msa0025460:CDS 45.0%
CATGAGCTTAGCTCAGTTGA+TGG + chr1_1:48544866-48544885 None:intergenic 45.0%
CATCAACTGAGCTAAGCTCA+TGG - chr1_1:48544864-48544883 Msa0025460:intron 45.0%
! AGGCTTTTGATCTCCGGTTA+AGG + chr1_1:48545102-48545121 None:intergenic 45.0%
ACAAGGAGCAACAAGATCAG+TGG - chr1_1:48545151-48545170 Msa0025460:intron 45.0%
! TGTTGTTTGAGCATCCCGTT+CGG + chr1_1:48545211-48545230 None:intergenic 45.0%
ACGGGATGCTCAAACAACAA+CGG - chr1_1:48545212-48545231 Msa0025460:intron 45.0%
!! TCTGGTCAAGTTGAGTGCAA+TGG - chr1_1:48545266-48545285 Msa0025460:intron 45.0%
ATTACCGTGGCATCAAATGG+AGG - chr1_1:48545323-48545342 Msa0025460:intron 45.0%
TTGTCCTCCATTTGATGCCA+CGG + chr1_1:48545330-48545349 None:intergenic 45.0%
TTTCTACGATGTGAGCAACG+TGG - chr1_1:48545352-48545371 Msa0025460:intron 45.0%
CCCGCAGAGCTTCAATTAAA+AGG - chr1_1:48545467-48545486 Msa0025460:intron 45.0%
! ATCTCGGAGTAATTTGTGGG+TGG + chr1_1:48545590-48545609 None:intergenic 45.0%
! AGTGCTGCTCTTATCATCGT+AGG + chr1_1:48545648-48545667 None:intergenic 45.0%
CAGAATGTGATGGCATAGCT+AGG + chr1_1:48545689-48545708 None:intergenic 45.0%
!! ACAAAAAAAAAATTAAATTT+AGG + chr1_1:48544823-48544842 None:intergenic 5.0%
!! ACAAAAAAAAAATTAAATTT+AGG + chr1_1:48544823-48544842 None:intergenic 5.0%
AGCTAAGGCAGAGAGCAACA+CGG + chr1_1:48544104-48544123 None:intergenic 50.0%
TGTGGATACACTGTATGGCC+AGG - chr1_1:48545074-48545093 Msa0025460:intron 50.0%
GTATGGCCAGGAACCTTAAC+CGG - chr1_1:48545086-48545105 Msa0025460:intron 50.0%
TGATCTCCGGTTAAGGTTCC+TGG + chr1_1:48545095-48545114 None:intergenic 50.0%
CCAAAATCGACCTGACCATG+GGG + chr1_1:48545186-48545205 None:intergenic 50.0%
CCCAAAATCGACCTGACCAT+GGG + chr1_1:48545187-48545206 None:intergenic 50.0%
!! CCCATGGTCAGGTCGATTTT+GGG - chr1_1:48545184-48545203 Msa0025460:intron 50.0%
GTTGTTTGAGCATCCCGTTC+GGG + chr1_1:48545210-48545229 None:intergenic 50.0%
AACTTGACCAGACGCGCAAT+CGG + chr1_1:48545258-48545277 None:intergenic 50.0%
! CAAGTTGAGTGCAATGGTGC+TGG - chr1_1:48545272-48545291 Msa0025460:intron 50.0%
TGCAATCCCACCAGCAACTT+TGG - chr1_1:48545295-48545314 Msa0025460:intron 50.0%
TACGATGTGAGCAACGTGGA+CGG - chr1_1:48545356-48545375 Msa0025460:intron 50.0%
CCTTGTGGAGTCACAGACAT+TGG + chr1_1:48545392-48545411 None:intergenic 50.0%
CCAATGTCTGTGACTCCACA+AGG - chr1_1:48545389-48545408 Msa0025460:intron 50.0%
ATGTCTGTGACTCCACAAGG+CGG - chr1_1:48545392-48545411 Msa0025460:intron 50.0%
TCGTGGAAGTTACAACACCG+AGG - chr1_1:48545556-48545575 Msa0025460:intron 50.0%
AGCTAAGGCAGAGAGCAACA+CGG + chr1_1:48544104-48544123 None:intergenic 50.0%
TGTGGATACACTGTATGGCC+AGG - chr1_1:48545074-48545093 Msa0025460:intron 50.0%
GTATGGCCAGGAACCTTAAC+CGG - chr1_1:48545086-48545105 Msa0025460:intron 50.0%
TGATCTCCGGTTAAGGTTCC+TGG + chr1_1:48545095-48545114 None:intergenic 50.0%
CCAAAATCGACCTGACCATG+GGG + chr1_1:48545186-48545205 None:intergenic 50.0%
CCCAAAATCGACCTGACCAT+GGG + chr1_1:48545187-48545206 None:intergenic 50.0%
!! CCCATGGTCAGGTCGATTTT+GGG - chr1_1:48545184-48545203 Msa0025460:intron 50.0%
GTTGTTTGAGCATCCCGTTC+GGG + chr1_1:48545210-48545229 None:intergenic 50.0%
AACTTGACCAGACGCGCAAT+CGG + chr1_1:48545258-48545277 None:intergenic 50.0%
! CAAGTTGAGTGCAATGGTGC+TGG - chr1_1:48545272-48545291 Msa0025460:intron 50.0%
TGCAATCCCACCAGCAACTT+TGG - chr1_1:48545295-48545314 Msa0025460:intron 50.0%
TACGATGTGAGCAACGTGGA+CGG - chr1_1:48545356-48545375 Msa0025460:intron 50.0%
CCTTGTGGAGTCACAGACAT+TGG + chr1_1:48545392-48545411 None:intergenic 50.0%
CCAATGTCTGTGACTCCACA+AGG - chr1_1:48545389-48545408 Msa0025460:intron 50.0%
ATGTCTGTGACTCCACAAGG+CGG - chr1_1:48545392-48545411 Msa0025460:intron 50.0%
TCGTGGAAGTTACAACACCG+AGG - chr1_1:48545556-48545575 Msa0025460:intron 50.0%
GCTAAGGCAGAGAGCAACAC+GGG + chr1_1:48544103-48544122 None:intergenic 55.0%
AATCGACCTGACCATGGGGA+AGG + chr1_1:48545182-48545201 None:intergenic 55.0%
!! CCCCATGGTCAGGTCGATTT+TGG - chr1_1:48545183-48545202 Msa0025460:intron 55.0%
GCCCAAAATCGACCTGACCA+TGG + chr1_1:48545188-48545207 None:intergenic 55.0%
!! AGGTCGATTTTGGGCCCGAA+CGG - chr1_1:48545193-48545212 Msa0025460:intron 55.0%
TGTCTGTGACTCCACAAGGC+GGG - chr1_1:48545393-48545412 Msa0025460:intron 55.0%
GCTAAGGCAGAGAGCAACAC+GGG + chr1_1:48544103-48544122 None:intergenic 55.0%
AATCGACCTGACCATGGGGA+AGG + chr1_1:48545182-48545201 None:intergenic 55.0%
!! CCCCATGGTCAGGTCGATTT+TGG - chr1_1:48545183-48545202 Msa0025460:intron 55.0%
GCCCAAAATCGACCTGACCA+TGG + chr1_1:48545188-48545207 None:intergenic 55.0%
!! AGGTCGATTTTGGGCCCGAA+CGG - chr1_1:48545193-48545212 Msa0025460:intron 55.0%
TGTCTGTGACTCCACAAGGC+GGG - chr1_1:48545393-48545412 Msa0025460:intron 55.0%
CAGTGGACCTTCCTTCCCCA+TGG - chr1_1:48545168-48545187 Msa0025460:intron 60.0%
GACCTTCCTTCCCCATGGTC+AGG - chr1_1:48545173-48545192 Msa0025460:intron 60.0%
GACCTGACCATGGGGAAGGA+AGG + chr1_1:48545178-48545197 None:intergenic 60.0%
!! GGTCGATTTTGGGCCCGAAC+GGG - chr1_1:48545194-48545213 Msa0025460:intron 60.0%
TGTGGGTGGACATGTCGCCT+CGG + chr1_1:48545576-48545595 None:intergenic 60.0%
CAGTGGACCTTCCTTCCCCA+TGG - chr1_1:48545168-48545187 Msa0025460:intron 60.0%
GACCTTCCTTCCCCATGGTC+AGG - chr1_1:48545173-48545192 Msa0025460:intron 60.0%
GACCTGACCATGGGGAAGGA+AGG + chr1_1:48545178-48545197 None:intergenic 60.0%
!! GGTCGATTTTGGGCCCGAAC+GGG - chr1_1:48545194-48545213 Msa0025460:intron 60.0%
TGTGGGTGGACATGTCGCCT+CGG + chr1_1:48545576-48545595 None:intergenic 60.0%
ACCAGACGCGCAATCGGCTG+TGG + chr1_1:48545252-48545271 None:intergenic 65.0%
GTGACTCCACAAGGCGGGAG+TGG - chr1_1:48545398-48545417 Msa0025460:intron 65.0%
CAATCGCCACTCCCGCCTTG+TGG + chr1_1:48545407-48545426 None:intergenic 65.0%
ACCAGACGCGCAATCGGCTG+TGG + chr1_1:48545252-48545271 None:intergenic 65.0%
GTGACTCCACAAGGCGGGAG+TGG - chr1_1:48545398-48545417 Msa0025460:intron 65.0%
CAATCGCCACTCCCGCCTTG+TGG + chr1_1:48545407-48545426 None:intergenic 65.0%
GCCACAGCCGATTGCGCGTC+TGG - chr1_1:48545248-48545267 Msa0025460:intron 70.0%
GCCACAGCCGATTGCGCGTC+TGG - chr1_1:48545248-48545267 Msa0025460:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48543956 48545935 48543956 ID=Msa0025460;Name=Msa0025460
chr1_1 mRNA 48543956 48545935 48543956 ID=Msa0025460-mRNA-1;Parent=Msa0025460;Name=Msa0025460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|2|220|242
chr1_1 exon 48543956 48544852 48543956 ID=Msa0025460-mRNA-1:exon:13948;Parent=Msa0025460-mRNA-1
chr1_1 exon 48545750 48545935 48545750 ID=Msa0025460-mRNA-1:exon:13947;Parent=Msa0025460-mRNA-1
chr1_1 five_prime_UTR 48545802 48545935 48545802 ID=Msa0025460-mRNA-1:five_prime_utr;Parent=Msa0025460-mRNA-1
chr1_1 CDS 48545750 48545801 48545750 ID=Msa0025460-mRNA-1:cds;Parent=Msa0025460-mRNA-1
chr1_1 CDS 48544176 48544852 48544176 ID=Msa0025460-mRNA-1:cds;Parent=Msa0025460-mRNA-1
chr1_1 three_prime_UTR 48543956 48544175 48543956 ID=Msa0025460-mRNA-1:three_prime_utr;Parent=Msa0025460-mRNA-1
Gene Sequence

>Msa0025460

ATGGCGATTACCCGTGTTGCTCTCTGCCTTAGCTTTGCATTCCTCTTCTATGCTGTTGGAGGAGCCCAAGTGACATTCACGAATAGATGTGGATACACTGTATGGCCAGGAACCTTAACCGGAGATCAAAAGCCTCAACTATCAACAACAGGTTTTGAATTGGGACAAGGAGCAACAAGATCAGTGGACCTTCCTTCCCCATGGTCAGGTCGATTTTGGGCCCGAACGGGATGCTCAAACAACAACGGAAGATTTAGTTGTGCCACAGCCGATTGCGCGTCTGGTCAAGTTGAGTGCAATGGTGCTGGTGCAATCCCACCAGCAACTTTGGTTGAAATTACCGTGGCATCAAATGGAGGACAAGATTTCTACGATGTGAGCAACGTGGACGGATTCAACGTGCCAATGTCTGTGACTCCACAAGGCGGGAGTGGCGATTGCAAAGCCTCTAGTTGTCCAGCAAATATCAACTCTGTGTGTCCCGCAGAGCTTCAATTAAAAGGTTCGGATGGGAGTGTCGTTGCTTGTAAGAGTGCTTGTTTGGCTTTTAACACCGATCAATATTGTTGTCGTGGAAGTTACAACACCGAGGCGACATGTCCACCCACAAATTACTCCGAGATATTTGAGAACCAATGTCCAGAAGCTTATAGCTATGCCTACGATGATAAGAGCAGCACTTTCACTTGCTCTAATGGACCTAGCTATGCCATCACATTCTGTCCCTAA
Protein sequence

>Msa0025460

MAITRVALCLSFAFLFYAVGGAQVTFTNRCGYTVWPGTLTGDQKPQLSTTGFELGQGATRSVDLPSPWSGRFWARTGCSNNNGRFSCATADCASGQVECNGAGAIPPATLVEITVASNGGQDFYDVSNVDGFNVPMSVTPQGGSGDCKASSCPANINSVCPAELQLKGSDGSVVACKSACLAFNTDQYCCRGSYNTEATCPPTNYSEIFENQCPEAYSYAYDDKSSTFTCSNGPSYAITFCP*