AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122320 MtrunA17_Chr1g0182111 95.258 949 45 0 1 949 1 949 0.0 1783
Msa0122320 MtrunA17_Chr5g0417861 71.875 256 44 6 694 949 10 237 5.20e-109 336
Msa0122320 MtrunA17_Chr7g0262631 26.476 1016 531 39 39 947 69 975 2.81e-36 148
Msa0122320 MtrunA17_Chr7g0222591 33.626 342 173 10 642 949 311 632 2.31e-33 137
Msa0122320 MtrunA17_Chr1g0182831 26.908 498 255 21 73 510 1 449 4.00e-19 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122320 AT3G53540.1 36.961 928 474 30 62 947 61 919 2.18e-140 442
Msa0122320 AT3G53540.2 36.961 928 474 30 62 947 92 950 1.20e-139 441
Msa0122320 AT4G28760.2 31.027 477 240 16 56 486 82 515 7.62e-36 147
Msa0122320 AT4G28760.1 31.027 477 240 16 56 486 82 515 7.62e-36 147
Msa0122320 AT5G43880.3 27.027 518 232 22 62 534 66 482 5.36e-26 115
Msa0122320 AT5G43880.2 27.027 518 232 22 62 534 66 482 5.36e-26 115
Msa0122320 AT5G43880.4 27.027 518 232 22 62 534 66 482 5.36e-26 115
Msa0122320 AT5G43880.1 27.027 518 232 22 62 534 66 482 5.36e-26 115
Msa0122320 AT2G39435.4 34.050 279 159 9 691 949 190 463 1.19e-25 112
Msa0122320 AT2G39435.3 34.050 279 159 9 691 949 190 463 1.19e-25 112
Msa0122320 AT2G39435.1 34.050 279 159 9 691 949 190 463 1.19e-25 112
Msa0122320 AT2G39435.5 34.050 279 159 9 691 949 190 463 1.19e-25 112
Msa0122320 AT2G39435.6 34.050 279 159 9 691 949 190 463 1.19e-25 112
Msa0122320 AT2G39435.2 33.333 267 153 9 691 937 190 451 6.05e-22 100
Msa0122320 AT2G20240.1 25.740 439 226 14 57 468 12 377 8.17e-17 85.9

Find 255 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGTTCTCATTTAAATT+TGG 0.111515 1_3:-48868582 Msa0122320:intron
CTCTTCTCCTCTCCCGTTTA+AGG 0.163515 1_3:+48867053 None:intergenic
TCTTCCTCTCCTAGATTTAA+AGG 0.174348 1_3:-48867577 Msa0122320:CDS
TGTTGTCCTAAAACCTAATA+TGG 0.174399 1_3:-48867839 Msa0122320:CDS
TCAGCTAATAACTTCTTAAT+TGG 0.212274 1_3:+48868528 None:intergenic
CTAAGGGGCTCAAAGGTTTC+AGG 0.216196 1_3:+48866845 None:intergenic
CTGATAATAATTTGGAAGTT+TGG 0.219189 1_3:-48864578 Msa0122320:CDS
CCTGCTTCATCTACTGTCTT+TGG 0.228985 1_3:-48867139 Msa0122320:CDS
CTTCTCTTGGATTCAGTTGC+TGG 0.236414 1_3:+48868495 None:intergenic
TGCTCAAACTGATAATAATT+TGG 0.237442 1_3:-48864586 Msa0122320:CDS
AAGGGATCAGGAAGAATTTA+AGG 0.251312 1_3:-48868316 Msa0122320:CDS
TGTGGAGAGAGAAGCATTAA+TGG 0.262838 1_3:+48869822 None:intergenic
TTCATCTAAAGATGAATAAA+TGG 0.268462 1_3:-48864092 Msa0122320:three_prime_UTR
GGAGAATAGTGAGGTGATAT+TGG 0.272317 1_3:+48869634 None:intergenic
TGCAGTTCTCATTTAAATTT+GGG 0.277047 1_3:-48868581 Msa0122320:intron
GATAGTTCAAGCAGTGCTTC+TGG 0.278337 1_3:-48867541 Msa0122320:CDS
TCATCTTGTTCTGAATGTTT+TGG 0.281356 1_3:-48865797 Msa0122320:CDS
AGAAATGCAGCCAAACCTTT+TGG 0.297212 1_3:-48864390 Msa0122320:CDS
CATTAATGGAGAGACGTTAT+TGG 0.300458 1_3:+48869836 None:intergenic
TATTGGACATCGAAATTATA+GGG 0.302985 1_3:+48869651 None:intergenic
TCGGCCCGTGTCTTAGTAAA+AGG 0.306031 1_3:-48866725 Msa0122320:CDS
TTAACCATATTCTTCTAGAT+TGG 0.322681 1_3:+48863974 None:intergenic
TCAGCACGCAAGAATGTTCT+AGG 0.325404 1_3:+48867112 None:intergenic
TCCTTGTGCTGCTTGTTATT+AGG 0.326961 1_3:+48868417 None:intergenic
GATTCCAATCTAGAAGAATA+TGG 0.328479 1_3:-48863978 Msa0122320:three_prime_UTR
ATTGATAGTAGATGATTTAG+TGG 0.328822 1_3:-48864211 Msa0122320:CDS
TTCACCCAATCTTGAGGTTC+AGG 0.330620 1_3:-48866870 Msa0122320:CDS
ATGTTCAAAGTTCTCCATAT+TGG 0.331456 1_3:+48867996 None:intergenic
TCAGCATGATTTCCATGTTC+TGG 0.336312 1_3:+48867757 None:intergenic
CTCTCCCGTTTAAGGTCCTT+TGG 0.339239 1_3:+48867061 None:intergenic
ATATTGGACATCGAAATTAT+AGG 0.341597 1_3:+48869650 None:intergenic
TCTTCGGATAAGGTTCTTCC+TGG 0.346250 1_3:-48866752 Msa0122320:CDS
TTCTGAATCTTCTTCGGATA+AGG 0.357900 1_3:-48866762 Msa0122320:CDS
TACCAGTTTCCTTACCTTGT+AGG 0.359838 1_3:+48865759 None:intergenic
ACTTCGTAATGATCGATATA+TGG 0.362032 1_3:-48867086 Msa0122320:CDS
TACCTACCACTCTCTACCTT+TGG 0.370274 1_3:+48868270 None:intergenic
CTAGAGTATCCTTTAAATCT+AGG 0.370791 1_3:+48867568 None:intergenic
AAAGTTGCTGTTATTTCCTC+TGG 0.371025 1_3:+48867508 None:intergenic
TGTTAGAAGGAAATACATTA+TGG 0.371730 1_3:-48864674 Msa0122320:CDS
ATTCATTGAACAGAAGTTCA+TGG 0.372969 1_3:-48868208 Msa0122320:CDS
AGAGATGACATTGATGTAAT+AGG 0.373309 1_3:-48864249 Msa0122320:CDS
TTCCTTGGTTCCCTAGCATC+TGG 0.374335 1_3:+48864331 None:intergenic
TTGATACGTCGCTAGGCGTT+TGG 0.375451 1_3:+48868182 None:intergenic
TCATGTAGAACCAACCAATA+TGG 0.376303 1_3:-48868010 Msa0122320:CDS
TGTTTCTGTGTTTGAAGATC+TGG 0.379454 1_3:-48864532 Msa0122320:CDS
CATCATCCTCTACCTTTCCT+TGG 0.391677 1_3:+48864316 None:intergenic
GCATTTCTCACCCATGGCTG+TGG 0.400191 1_3:+48864405 None:intergenic
GGTGAGAGAGTGAGGGAGAG+TGG 0.400592 1_3:+48869883 None:intergenic
GTGGAAATCTTCTAAACAAT+CGG 0.401053 1_3:-48868559 Msa0122320:CDS
GGGTGAATCTTCTTCAAGAT+TGG 0.403956 1_3:+48866886 None:intergenic
CAGATTCCAACTTCAGCAAC+TGG 0.404643 1_3:+48864763 None:intergenic
AACACCTGGGGATCTTCTCT+TGG 0.405633 1_3:+48868482 None:intergenic
AGAGGAAATAACAGCAACTT+TGG 0.406142 1_3:-48867506 Msa0122320:CDS
GTGATTTGACAACTTGTTCA+AGG 0.407112 1_3:-48864497 Msa0122320:CDS
GAGAGAGAGGTGAGAGAGTG+AGG 0.407935 1_3:+48869875 None:intergenic
ATTTGGACAAATAGATTATG+AGG 0.408517 1_3:-48864055 Msa0122320:three_prime_UTR
ACCCCTTTCCAATCACATTC+CGG 0.411094 1_3:-48868033 Msa0122320:CDS
ATTTCAATTTGAGGTCAGAT+AGG 0.413621 1_3:-48867972 Msa0122320:CDS
AATTCTAGAAGCACAATATC+TGG 0.414534 1_3:-48866998 Msa0122320:CDS
ATATGGTTAAATCGTAAAAT+CGG 0.415637 1_3:-48863961 Msa0122320:three_prime_UTR
GAGGATGTGAATAAGTTTAG+TGG 0.416713 1_3:-48864036 Msa0122320:three_prime_UTR
GTGAGAGAGTGAGGGAGAGT+GGG 0.418467 1_3:+48869884 None:intergenic
TGGTGCCAAAGGACCTTAAA+CGG 0.420078 1_3:-48867066 Msa0122320:CDS
TGGGCCTTCTGAATCTTCTT+CGG 0.420630 1_3:-48866768 Msa0122320:CDS
AGGAGCCTGAACCTCAAGAT+TGG 0.421532 1_3:+48866865 None:intergenic
GAAGGATCAAGAACTGAGAT+TGG 0.422245 1_3:+48865836 None:intergenic
ACCTACCACTCTCTACCTTT+GGG 0.426395 1_3:+48868271 None:intergenic
AGCCAATGTGCTGCTCCTGC+TGG 0.428930 1_3:+48867351 None:intergenic
TTCTGAGTTGGTTGAACCAC+TGG 0.431879 1_3:-48867227 Msa0122320:CDS
TAGGAGGAGCTCAAGGGATC+AGG 0.437081 1_3:-48868328 Msa0122320:CDS
AGATAGAGTAGAAACTAGAA+AGG 0.441978 1_3:+48869772 None:intergenic
AGAATTTAAGGATGTATTTG+AGG 0.444098 1_3:-48868304 Msa0122320:CDS
ATAGTTCAAGCAGTGCTTCT+GGG 0.448499 1_3:-48867540 Msa0122320:CDS
GACGTATCAGCTGGTTCTAC+TGG 0.450301 1_3:-48865935 Msa0122320:CDS
GTATCTTCTGAAATGTTAGA+AGG 0.450334 1_3:-48864687 Msa0122320:CDS
TTGAACATGATTTCAATTTG+AGG 0.450676 1_3:-48867981 Msa0122320:CDS
CAACAGGGGTGAATTACAAC+AGG 0.452060 1_3:-48867945 Msa0122320:CDS
GTATTCATCTTCAGATTTGA+AGG 0.452350 1_3:-48868250 Msa0122320:CDS
TATGGAGAACTGAAGATAGC+TGG 0.453058 1_3:-48864656 Msa0122320:CDS
CTACATGACCGGAATGTGAT+TGG 0.453884 1_3:+48868025 None:intergenic
ACCTTGAGGAAGATGAAGCT+TGG 0.454666 1_3:+48869503 None:intergenic
TTGGCTGCATTTCTCACCCA+TGG 0.454936 1_3:+48864399 None:intergenic
AGGTCAGATAGGGAGTCAAC+AGG 0.455232 1_3:-48867961 Msa0122320:CDS
GTCTGTGCATTCACTGAAGC+AGG 0.455725 1_3:-48866960 Msa0122320:CDS
CAGCATGGAGATTCATGTCC+AGG 0.460685 1_3:+48865881 None:intergenic
CTCTCTGAAGCACCTGTACC+TGG 0.463051 1_3:-48865899 Msa0122320:CDS
TCTCCTGATTCTAGTTTCTC+CGG 0.466591 1_3:-48868810 Msa0122320:CDS
AAAGGTAGAGGATGATGTCC+TGG 0.466697 1_3:-48864310 Msa0122320:CDS
CCGGGAGAATAGTTGTCCTT+AGG 0.466746 1_3:-48864155 Msa0122320:three_prime_UTR
GACCGGAATGTGATTGGAAA+GGG 0.468052 1_3:+48868031 None:intergenic
CTAAAAGACCTTGCACTGTC+AGG 0.468134 1_3:+48867682 None:intergenic
AATCATAAAAGATGAAGAAA+TGG 0.473633 1_3:+48869561 None:intergenic
TCATAAACAGCAACAGCATC+CGG 0.477893 1_3:-48868838 Msa0122320:CDS
TGTTTGAAGATCTGGAAGAT+AGG 0.481147 1_3:-48864524 Msa0122320:CDS
GACAGCCTGCCTAGCGGGGA+AGG 0.481337 1_3:-48867283 Msa0122320:CDS
TATCAAATGAAAACACTGTT+GGG 0.482329 1_3:-48866787 Msa0122320:CDS
GAGGAAATAACAGCAACTTT+GGG 0.485008 1_3:-48867505 Msa0122320:CDS
GCAACTCCAGTTGCTGAAGT+TGG 0.486560 1_3:-48864769 Msa0122320:CDS
GTACCCTTCATTCTCTTACC+AGG 0.488941 1_3:+48867313 None:intergenic
CTACGTCTATTTAAGTCAAA+CGG 0.489193 1_3:+48867478 None:intergenic
ACAACAATCTTTGACGATCT+AGG 0.490098 1_3:+48867856 None:intergenic
AGTGGGTGTGAGAGAGAGAG+AGG 0.490208 1_3:+48869862 None:intergenic
AGGTGTTATAGCTAGATTGA+TGG 0.492264 1_3:-48868466 Msa0122320:CDS
AAGACACGGGCCGATGATCC+AGG 0.492746 1_3:+48866734 None:intergenic
CAACGGCGAACCTTCTGAGT+TGG 0.495337 1_3:-48867239 Msa0122320:CDS
TGAAACCTTCCCCGCTAGGC+AGG 0.495785 1_3:+48867278 None:intergenic
CCTAGTGATGTAAATCAAGT+AGG 0.498130 1_3:-48864126 Msa0122320:three_prime_UTR
CCTACTTGATTTACATCACT+AGG 0.499698 1_3:+48864126 None:intergenic
CTAGAATCAGGAGAGAAATC+CGG 0.500407 1_3:+48868819 None:intergenic
CCACCGGAGAAACTAGAATC+AGG 0.500712 1_3:+48868807 None:intergenic
CCTAAGGACAACTATTCTCC+CGG 0.501684 1_3:+48864155 None:intergenic
GATCGTCTAGGAGGAGCTCA+AGG 0.502385 1_3:-48868335 Msa0122320:CDS
GACAGATCATCTGTAAAAGA+AGG 0.502791 1_3:+48865818 None:intergenic
TGAGAGAGTGAGGGAGAGTG+GGG 0.506048 1_3:+48869885 None:intergenic
ATTGGTTGGTTCTACATGAC+CGG 0.509610 1_3:+48868014 None:intergenic
AAGAGGTGCAAGGCACCAGC+AGG 0.509861 1_3:-48867366 Msa0122320:CDS
CGAAGAAAATTCAATGCAAG+AGG 0.512210 1_3:-48866684 Msa0122320:intron
GATAGAGTAGAAACTAGAAA+GGG 0.514075 1_3:+48869773 None:intergenic
AAGCATCGCGATGGTTATCA+TGG 0.515516 1_3:-48867913 Msa0122320:CDS
TTTCTCTGCAACCTTGCCAC+CGG 0.516407 1_3:+48868791 None:intergenic
GGAGCCTGAACCTCAAGATT+GGG 0.516857 1_3:+48866866 None:intergenic
TTCTAGTTTCTCCGGTGGCA+AGG 0.517530 1_3:-48868802 Msa0122320:CDS
ATTATCAGAGAGGTGGAAGA+TGG 0.517782 1_3:-48867401 Msa0122320:CDS
ATATTTCAGGACGTATCAGC+TGG 0.518195 1_3:-48865944 Msa0122320:intron
GCTAGATTGATGGGTCTTGA+CGG 0.518416 1_3:-48868456 Msa0122320:CDS
TCATTGAAACCTTCCCCGCT+AGG 0.518789 1_3:+48867274 None:intergenic
GCTGATATGCTAGCGTTCCC+TGG 0.518873 1_3:-48867331 Msa0122320:CDS
GTATCAAATGAAAACACTGT+TGG 0.522003 1_3:-48866788 Msa0122320:CDS
CTGGGTATCAGCAGCAAGGA+TGG 0.522721 1_3:-48867208 Msa0122320:CDS
CCAACGCCTCAAGTGTATCA+TGG 0.523411 1_3:+48868136 None:intergenic
GTTGTCCTAAAACCTAATAT+GGG 0.523452 1_3:-48867838 Msa0122320:CDS
CCATGATACACTTGAGGCGT+TGG 0.524158 1_3:-48868136 Msa0122320:CDS
CATTTCTCACCCATGGCTGT+GGG 0.524711 1_3:+48864406 None:intergenic
ATCAATCTAGCTATAACACC+TGG 0.525093 1_3:+48868468 None:intergenic
GGTGCCAAAGGACCTTAAAC+GGG 0.527205 1_3:-48867065 Msa0122320:CDS
CAACTTGTTCAAGGTCTGAA+AGG 0.527539 1_3:-48864488 Msa0122320:CDS
AAAACCCTAGGAGGAGGAGG+AGG 0.528328 1_3:+48869613 None:intergenic
ATCAAGAACTGAGATTGGAC+TGG 0.529259 1_3:+48865841 None:intergenic
GAGAGACGTTATTGGAAGAG+TGG 0.531902 1_3:+48869844 None:intergenic
GGAGATTCATGTCCAGGTAC+AGG 0.532375 1_3:+48865887 None:intergenic
TGGAAATCTTCTAAACAATC+GGG 0.532665 1_3:-48868558 Msa0122320:CDS
TTTATCTCTAAGGGGCTCAA+AGG 0.532888 1_3:+48866838 None:intergenic
GAAAGGGTGTGTAGCAGTAG+TGG 0.533465 1_3:+48869789 None:intergenic
TTTCAATTTGAGGTCAGATA+GGG 0.533938 1_3:-48867971 Msa0122320:CDS
TATCTGGTCACAAGAAGTCT+TGG 0.534254 1_3:-48866982 Msa0122320:CDS
ATCTACTGACCCACAGCCAT+GGG 0.534736 1_3:-48864415 Msa0122320:CDS
CAAGGTTGCAGAGAAAGATT+CGG 0.535082 1_3:-48868784 Msa0122320:intron
CCAAAGACAGTAGATGAAGC+AGG 0.535618 1_3:+48867139 None:intergenic
GGTGTTATAGCTAGATTGAT+GGG 0.536964 1_3:-48868465 Msa0122320:CDS
CTAAGGACAACTATTCTCCC+GGG 0.537637 1_3:+48864156 None:intergenic
TTCTGCTAAAATACTTCAAG+CGG 0.538802 1_3:-48868098 Msa0122320:CDS
ATGATTAACGGGCTTCAAGA+TGG 0.541073 1_3:-48864360 Msa0122320:CDS
TACCCTTCATTCTCTTACCA+GGG 0.542493 1_3:+48867314 None:intergenic
TCAAAGTTCTCCATATTGGT+TGG 0.546294 1_3:+48868000 None:intergenic
GGTCAGATAGGGAGTCAACA+GGG 0.546327 1_3:-48867960 Msa0122320:CDS
AGAAAATTATGCGGAGAACA+AGG 0.550019 1_3:+48867781 None:intergenic
CACCAGCAGGAGCAGCACAT+TGG 0.551873 1_3:-48867353 Msa0122320:CDS
TAAGGTTCTTCCTGGATCAT+CGG 0.551990 1_3:-48866744 Msa0122320:CDS
CTAGTGATGTAAATCAAGTA+GGG 0.553151 1_3:-48864125 Msa0122320:three_prime_UTR
CCTCAATCAGCAACTTGCCC+AGG 0.553535 1_3:+48864292 None:intergenic
AGAGAGAGGTGAGAGAGTGA+GGG 0.554948 1_3:+48869876 None:intergenic
TAAATTTGCCTGACAGTGCA+AGG 0.555917 1_3:-48867690 Msa0122320:CDS
CCTGGGCAAGTTGCTGATTG+AGG 0.558438 1_3:-48864292 Msa0122320:CDS
AGCAGAGGAACGGCAAATGA+CGG 0.558914 1_3:-48868360 Msa0122320:CDS
ATGGAGAACTGAAGATAGCT+GGG 0.559618 1_3:-48864655 Msa0122320:CDS
TCATCTTCAGATTTGAAGGA+CGG 0.560308 1_3:-48868246 Msa0122320:CDS
GTATCAGCAGCAAGGATGGT+TGG 0.563267 1_3:-48867204 Msa0122320:CDS
TTGTTATTAGGCTGCTGAGA+TGG 0.565145 1_3:+48868429 None:intergenic
AGAGACGTTATTGGAAGAGT+GGG 0.565909 1_3:+48869845 None:intergenic
AATGATAAGTTTGCTCGCAA+CGG 0.566185 1_3:-48867256 Msa0122320:CDS
GTTCCCTGGTAAGAGAATGA+AGG 0.568397 1_3:-48867317 Msa0122320:CDS
TCCAAGCTTCATCTTCCTCA+AGG 0.569914 1_3:-48869504 Msa0122320:intron
CTAACCATGGTAAATCAGCT+TGG 0.570394 1_3:-48864000 Msa0122320:three_prime_UTR
AGAAGAGATTATCAGAGAGG+TGG 0.574106 1_3:-48867408 Msa0122320:CDS
AGGAAGATGAAGCTTGGAGT+TGG 0.574342 1_3:+48869509 None:intergenic
AATCTACTGACCCACAGCCA+TGG 0.575881 1_3:-48864416 Msa0122320:CDS
AGTTGCTGATTGAGGAGTCT+CGG 0.577954 1_3:-48864284 Msa0122320:CDS
GGAGGAGGAGGAGAATAGTG+AGG 0.578970 1_3:+48869625 None:intergenic
GCCTAATAACAAGCAGCACA+AGG 0.581754 1_3:-48868418 Msa0122320:CDS
AGTTCTCATTTAAATTTGGG+TGG 0.584733 1_3:-48868578 Msa0122320:CDS
TCTGAGTTGGTTGAACCACT+GGG 0.584863 1_3:-48867226 Msa0122320:CDS
CAAAGGACCTTAAACGGGAG+AGG 0.584910 1_3:-48867060 Msa0122320:CDS
AGAAGATTCACCCAATCTTG+AGG 0.585560 1_3:-48866876 Msa0122320:CDS
TCAAGAACTGAGATTGGACT+GGG 0.587958 1_3:+48865842 None:intergenic
GTATCAGCTGGTTCTACTGG+TGG 0.588755 1_3:-48865932 Msa0122320:CDS
TCCCAAAGGTAGAGAGTGGT+AGG 0.589898 1_3:-48868272 Msa0122320:CDS
AAAGGGTGTGTAGCAGTAGT+GGG 0.590337 1_3:+48869790 None:intergenic
TTCCCTGGTAAGAGAATGAA+GGG 0.592385 1_3:-48867316 Msa0122320:CDS
TGACCGGAATGTGATTGGAA+AGG 0.595190 1_3:+48868030 None:intergenic
CTAGTTTCAAGTGACGAAGA+TGG 0.596738 1_3:-48864717 Msa0122320:CDS
TGATCGATATATGGTGCCAA+AGG 0.596759 1_3:-48867077 Msa0122320:CDS
AGGGAACCAAGGAAAGGTAG+AGG 0.597684 1_3:-48864322 Msa0122320:CDS
TTCCAGATGCTAGGGAACCA+AGG 0.597921 1_3:-48864333 Msa0122320:CDS
CAAATGACGGCCGATCGTCT+AGG 0.598475 1_3:-48868347 Msa0122320:CDS
TGATCAGCATCTTTACAGCA+TGG 0.598824 1_3:+48865866 None:intergenic
TCAGCAGCAAGGATGGTTGG+AGG 0.599245 1_3:-48867201 Msa0122320:CDS
GATTTAGTGGCAGAAATAGT+CGG 0.599671 1_3:-48864198 Msa0122320:CDS
AGTAGTGGGTAAGAATAATG+TGG 0.600210 1_3:+48869804 None:intergenic
CAAAGAAGAGATTATCAGAG+AGG 0.605669 1_3:-48867411 Msa0122320:CDS
TTCAAGTGACGAAGATGGCG+TGG 0.605966 1_3:-48864712 Msa0122320:CDS
CATCACTAGGAAACATCCTA+AGG 0.606274 1_3:+48864139 None:intergenic
GAATCCAAGAGAAGATCCCC+AGG 0.606684 1_3:-48868486 Msa0122320:CDS
GAATCCAAGCTGATTTACCA+TGG 0.607098 1_3:+48863996 None:intergenic
GAAAATCTTGATACGTCGCT+AGG 0.608770 1_3:+48868175 None:intergenic
TCAATCTAGCTATAACACCT+GGG 0.609545 1_3:+48868469 None:intergenic
CAGCAGCAAGGATGGTTGGA+GGG 0.612392 1_3:-48867200 Msa0122320:CDS
CATGTATTAGTAGTTTGTCA+AGG 0.613209 1_3:-48867174 Msa0122320:CDS
TCAAACACAGAAACACTCAC+AGG 0.614246 1_3:+48864540 None:intergenic
AAGGTAGAGGATGATGTCCT+GGG 0.615193 1_3:-48864309 Msa0122320:CDS
AGTGTCAGTGCTGACCTACA+AGG 0.615243 1_3:-48865773 Msa0122320:intron
CTAGCATAGGTCCCTCCACA+TGG 0.618293 1_3:+48864736 None:intergenic
TGAATCATCTGTGAGTAGAG+AGG 0.619779 1_3:-48867434 Msa0122320:CDS
TCGTCACTTGAAACTAGCAT+AGG 0.622726 1_3:+48864723 None:intergenic
TTGAGCTCCTCCTAGACGAT+CGG 0.626010 1_3:+48868337 None:intergenic
AAATTGCAAAGGAAGTAACT+AGG 0.628658 1_3:-48867636 Msa0122320:CDS
GAGATCCCAAAGGTAGAGAG+TGG 0.629561 1_3:-48868276 Msa0122320:CDS
TGACAATTCCTGAATTGATG+CGG 0.632177 1_3:+48864451 None:intergenic
CCTGATTCTAGTTTCTCCGG+TGG 0.633485 1_3:-48868807 Msa0122320:CDS
GGAATCTAGAGAAATTGCAA+AGG 0.633666 1_3:-48867647 Msa0122320:CDS
TGAGGCGTTGGACTCTAACA+AGG 0.635888 1_3:-48868124 Msa0122320:CDS
TTTCATCAGAAGCATCGCGA+TGG 0.636867 1_3:-48867922 Msa0122320:CDS
AAATCTTCTAAACAATCGGG+TGG 0.637998 1_3:-48868555 Msa0122320:CDS
ATTGGACATCGAAATTATAG+GGG 0.638878 1_3:+48869652 None:intergenic
TAAGGACAACTATTCTCCCG+GGG 0.642645 1_3:+48864157 None:intergenic
GATGCTAGGGAACCAAGGAA+AGG 0.644912 1_3:-48864328 Msa0122320:CDS
GTATCCTTTAAATCTAGGAG+AGG 0.646624 1_3:+48867573 None:intergenic
GGAATCTGAAGACCATGTGG+AGG 0.646710 1_3:-48864748 Msa0122320:CDS
AGTGGTTCAACCAACTCAGA+AGG 0.647689 1_3:+48867229 None:intergenic
ATGACGGCCGATCGTCTAGG+AGG 0.649553 1_3:-48868344 Msa0122320:CDS
ATCGTCTAGGAGGAGCTCAA+GGG 0.651662 1_3:-48868334 Msa0122320:CDS
ACCACTGGGTATCAGCAGCA+AGG 0.651868 1_3:-48867212 Msa0122320:CDS
GATGGCACACAAGTCTCAAG+AGG 0.654613 1_3:-48867383 Msa0122320:CDS
CACAAGTCTCAAGAGGTGCA+AGG 0.655382 1_3:-48867376 Msa0122320:CDS
TCCTTGCTGCTGATACCCAG+TGG 0.657434 1_3:+48867211 None:intergenic
AGAAATGGCGCAGATCGAGA+AGG 0.660330 1_3:+48869576 None:intergenic
TTCTGGGAATGAATCTCCAG+AGG 0.661179 1_3:-48867524 Msa0122320:CDS
CAAACACAGAAACACTCACA+GGG 0.661315 1_3:+48864541 None:intergenic
GAATCTGAAGACCATGTGGA+GGG 0.661775 1_3:-48864747 Msa0122320:CDS
ACCGGAATGTGATTGGAAAG+GGG 0.664557 1_3:+48868032 None:intergenic
GTCAGATAGGGAGTCAACAG+GGG 0.667063 1_3:-48867959 Msa0122320:CDS
AAGAGTCTTGATCATAGACA+TGG 0.675010 1_3:-48867025 Msa0122320:CDS
ACTTAAATAGACGTAGCAGA+CGG 0.675436 1_3:-48867471 Msa0122320:CDS
CAATCTAGCTATAACACCTG+GGG 0.676866 1_3:+48868470 None:intergenic
CAGGTACAGGTGCTTCAGAG+AGG 0.687176 1_3:+48865900 None:intergenic
TTATCCGAAGAAGATTCAGA+AGG 0.687645 1_3:+48866764 None:intergenic
GATGAAGCTTGGAGTTGGTG+CGG 0.700561 1_3:+48869514 None:intergenic
TGCTGATTGAGGAGTCTCGG+TGG 0.702994 1_3:-48864281 Msa0122320:CDS
GTTGGAATCTGAAGACCATG+TGG 0.720815 1_3:-48864751 Msa0122320:CDS
AATATGGGAAAATTTCAGAG+TGG 0.723259 1_3:-48867823 Msa0122320:CDS
TGTTCTGGCAGAAAATTATG+CGG 0.723663 1_3:+48867772 None:intergenic
TGAGGTCTCAGAGATCCCAA+AGG 0.724251 1_3:-48868286 Msa0122320:CDS
AGAGTTCCATGATACACTTG+AGG 0.730462 1_3:-48868142 Msa0122320:CDS
AAGGACAACTATTCTCCCGG+GGG 0.774055 1_3:+48864158 None:intergenic
AAATTGAAGAGAGCTAACCA+TGG 0.776077 1_3:-48864013 Msa0122320:three_prime_UTR
ACAGATGATTCACTAGAACG+CGG 0.780245 1_3:+48867445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATTTGATTTCATTA+AGG - chr1_3:48864582-48864601 Msa0122320:CDS 10.0%
!! TAAAAATAACAAAAATAACA+CGG + chr1_3:48865217-48865236 None:intergenic 10.0%
!!! AAATTTTATGAGAAATTATT+TGG + chr1_3:48867357-48867376 None:intergenic 10.0%
!! ATTAAGAAATGTATAAATAA+GGG + chr1_3:48867509-48867528 None:intergenic 10.0%
!! TATTAAGAAATGTATAAATA+AGG + chr1_3:48867510-48867529 None:intergenic 10.0%
!! AAAAAAAGCAGAAAAAAATT+TGG + chr1_3:48864713-48864732 None:intergenic 15.0%
!!! TTGTTGTTTAATTTATTTTC+AGG - chr1_3:48864994-48865013 Msa0122320:intron 15.0%
!!! TGTTGTTTAATTTATTTTCA+GGG - chr1_3:48864995-48865014 Msa0122320:intron 15.0%
!! ATAAACATATCAAAATAACA+TGG + chr1_3:48867221-48867240 None:intergenic 15.0%
!! AAAAAATAATCAAATTCTCA+AGG + chr1_3:48867640-48867659 None:intergenic 15.0%
!! AATATTAATAGCAACAAAAT+GGG + chr1_3:48867728-48867747 None:intergenic 15.0%
!! AAATATTAATAGCAACAAAA+TGG + chr1_3:48867729-48867748 None:intergenic 15.0%
!! ATGGTTAAATAATAAATTTG+TGG + chr1_3:48868538-48868557 None:intergenic 15.0%
!!! TGGATAATAATATTTTCATT+TGG - chr1_3:48869795-48869814 Msa0122320:five_prime_UTR 15.0%
!! GAAAAAGAAAAAGAAAATGT+AGG + chr1_3:48864145-48864164 None:intergenic 20.0%
!! AATCATAAAAGATGAAGAAA+TGG + chr1_3:48864309-48864328 None:intergenic 20.0%
!! TAAAAAAGTAAAAGGTGAAA+AGG + chr1_3:48864482-48864501 None:intergenic 20.0%
!!! TATAGCTAGAATTTAGAATA+AGG - chr1_3:48865149-48865168 Msa0122320:intron 20.0%
!!! ATTTTGAACTTCATTTAAGT+CGG + chr1_3:48866951-48866970 None:intergenic 20.0%
!! TGAGAAATTATTTGGTTAAT+TGG + chr1_3:48867349-48867368 None:intergenic 20.0%
!! ATGTAAAGTTTCAAAAACAT+TGG - chr1_3:48867667-48867686 Msa0122320:CDS 20.0%
!! AAAATGTATGATTAAGTCTA+AGG + chr1_3:48867776-48867795 None:intergenic 20.0%
!! AATATTTCAAAGTTCTGTTA+AGG - chr1_3:48867869-48867888 Msa0122320:CDS 20.0%
!! ATATTTCAAAGTTCTGTTAA+GGG - chr1_3:48867870-48867889 Msa0122320:CDS 20.0%
!! TGATATTGTTGTAATATTTC+AGG - chr1_3:48867910-48867929 Msa0122320:CDS 20.0%
!! CAATTATGAATCCAAATATA+AGG + chr1_3:48868179-48868198 None:intergenic 20.0%
!! GTAATATTAAACCCTATTTA+TGG - chr1_3:48868281-48868300 Msa0122320:CDS 20.0%
!!! TTTTATTATTGTCAAGAATG+TGG + chr1_3:48868409-48868428 None:intergenic 20.0%
!! TAAAATTACTTCAATTTGCA+TGG - chr1_3:48868424-48868443 Msa0122320:CDS 20.0%
!! TTTATTATTTAACCATAGCA+AGG - chr1_3:48868542-48868561 Msa0122320:CDS 20.0%
!! TTATTATTTAACCATAGCAA+GGG - chr1_3:48868543-48868562 Msa0122320:CDS 20.0%
!!! TATTGAATGAATCTAAAACA+TGG + chr1_3:48868688-48868707 None:intergenic 20.0%
!!! AACCTTTCATCAATTTTTTA+TGG - chr1_3:48868934-48868953 Msa0122320:intron 20.0%
!!! TTAATCATTTTTGATCCAAA+AGG + chr1_3:48869495-48869514 None:intergenic 20.0%
!! TTTGGATCAAAAATGATTAA+CGG - chr1_3:48869495-48869514 Msa0122320:intron 20.0%
!! TTCATCTAAAGATGAATAAA+TGG - chr1_3:48869775-48869794 Msa0122320:five_prime_UTR 20.0%
! TATTGGACATCGAAATTATA+GGG + chr1_3:48864219-48864238 None:intergenic 25.0%
! ATATTGGACATCGAAATTAT+AGG + chr1_3:48864220-48864239 None:intergenic 25.0%
!!! GCTTTTTTTTAACTTTTCTG+CGG - chr1_3:48864724-48864743 Msa0122320:CDS 25.0%
! AAATTACTAGAATCAATGCA+AGG + chr1_3:48864905-48864924 None:intergenic 25.0%
!!! GTTTTTTCCTTTTTCACTTT+TGG - chr1_3:48865112-48865131 Msa0122320:intron 25.0%
! TTCATAACCAAAAGTGAAAA+AGG + chr1_3:48865122-48865141 None:intergenic 25.0%
! TTGCAGTTCTCATTTAAATT+TGG - chr1_3:48865285-48865304 Msa0122320:intron 25.0%
! TGCAGTTCTCATTTAAATTT+GGG - chr1_3:48865286-48865305 Msa0122320:intron 25.0%
! TCAGCTAATAACTTCTTAAT+TGG + chr1_3:48865342-48865361 None:intergenic 25.0%
! AGAATTTAAGGATGTATTTG+AGG - chr1_3:48865563-48865582 Msa0122320:intron 25.0%
! TTGAACATGATTTCAATTTG+AGG - chr1_3:48865886-48865905 Msa0122320:CDS 25.0%
!! ATTTTCCCATATTAGGTTTT+AGG + chr1_3:48866037-48866056 None:intergenic 25.0%
!! TTTTGAACTTCATTTAAGTC+GGG + chr1_3:48866950-48866969 None:intergenic 25.0%
!! AACAACACTTTTATCTCTAA+GGG + chr1_3:48867041-48867060 None:intergenic 25.0%
!! AAACAACACTTTTATCTCTA+AGG + chr1_3:48867042-48867061 None:intergenic 25.0%
! TATCAAATGAAAACACTGTT+GGG - chr1_3:48867080-48867099 Msa0122320:CDS 25.0%
! CAGATAAAAGAACTAAGAAT+AGG + chr1_3:48867599-48867618 None:intergenic 25.0%
!! ATTTTGCACAATTGTTTAGA+TGG - chr1_3:48867745-48867764 Msa0122320:CDS 25.0%
! AGAGATGATTAAGTAACTAA+AGG + chr1_3:48868205-48868224 None:intergenic 25.0%
! ATATAGGATGTCCATAAATA+GGG + chr1_3:48868295-48868314 None:intergenic 25.0%
! TATATAGGATGTCCATAAAT+AGG + chr1_3:48868296-48868315 None:intergenic 25.0%
! ATCCTATATATGAAGGTTAA+AGG - chr1_3:48868306-48868325 Msa0122320:CDS 25.0%
! AACCTTTAACCTTCATATAT+AGG + chr1_3:48868311-48868330 None:intergenic 25.0%
!!! TACAGTTTTTTGATCATAGA+CGG - chr1_3:48868331-48868350 Msa0122320:CDS 25.0%
!!! AGATTGATGACGTAATTATT+AGG + chr1_3:48868607-48868626 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr1_3:48868773-48868792 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr1_3:48868699-48868718 Msa0122320:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr1_3:48868773-48868792 Msa0122320:intron 25.0%
! CTCCATAAAAAATTGATGAA+AGG + chr1_3:48868939-48868958 None:intergenic 25.0%
! AATAACAGTTCATTACAACA+AGG + chr1_3:48869060-48869079 None:intergenic 25.0%
! AATGAACTGTTATTGTTGAT+AGG - chr1_3:48869066-48869085 Msa0122320:intron 25.0%
! ATGAACTGTTATTGTTGATA+GGG - chr1_3:48869067-48869086 Msa0122320:intron 25.0%
! TGTTAGAAGGAAATACATTA+TGG - chr1_3:48869193-48869212 Msa0122320:intron 25.0%
! TGCTCAAACTGATAATAATT+TGG - chr1_3:48869281-48869300 Msa0122320:intron 25.0%
! CTGATAATAATTTGGAAGTT+TGG - chr1_3:48869289-48869308 Msa0122320:intron 25.0%
! TTGGATCAAAAATGATTAAC+GGG - chr1_3:48869496-48869515 Msa0122320:intron 25.0%
!! ATTGATAGTAGATGATTTAG+TGG - chr1_3:48869656-48869675 Msa0122320:five_prime_UTR 25.0%
! ATTTGGACAAATAGATTATG+AGG - chr1_3:48869812-48869831 Msa0122320:five_prime_UTR 25.0%
! TTAACCATATTCTTCTAGAT+TGG + chr1_3:48869896-48869915 None:intergenic 25.0%
GATAGAGTAGAAACTAGAAA+GGG + chr1_3:48864097-48864116 None:intergenic 30.0%
AGATAGAGTAGAAACTAGAA+AGG + chr1_3:48864098-48864117 None:intergenic 30.0%
AAATTATAGGGGAAAAAGTG+TGG + chr1_3:48864207-48864226 None:intergenic 30.0%
ATTGGACATCGAAATTATAG+GGG + chr1_3:48864218-48864237 None:intergenic 30.0%
!!! TTTTTTTAACTTTTCTGCGG+TGG - chr1_3:48864727-48864746 Msa0122320:CDS 30.0%
AGTTCTCATTTAAATTTGGG+TGG - chr1_3:48865289-48865308 Msa0122320:intron 30.0%
GTGGAAATCTTCTAAACAAT+CGG - chr1_3:48865308-48865327 Msa0122320:intron 30.0%
TGGAAATCTTCTAAACAATC+GGG - chr1_3:48865309-48865328 Msa0122320:intron 30.0%
GTATTCATCTTCAGATTTGA+AGG - chr1_3:48865617-48865636 Msa0122320:intron 30.0%
ATTCATTGAACAGAAGTTCA+TGG - chr1_3:48865659-48865678 Msa0122320:intron 30.0%
TTCTGCTAAAATACTTCAAG+CGG - chr1_3:48865769-48865788 Msa0122320:intron 30.0%
!! TGCTTTTTAAACAAAGAGTC+TGG + chr1_3:48865795-48865814 None:intergenic 30.0%
ATGTTCAAAGTTCTCCATAT+TGG + chr1_3:48865874-48865893 None:intergenic 30.0%
! ATTTCAATTTGAGGTCAGAT+AGG - chr1_3:48865895-48865914 Msa0122320:CDS 30.0%
! TTTCAATTTGAGGTCAGATA+GGG - chr1_3:48865896-48865915 Msa0122320:CDS 30.0%
TGTTGTCCTAAAACCTAATA+TGG - chr1_3:48866028-48866047 Msa0122320:intron 30.0%
GTTGTCCTAAAACCTAATAT+GGG - chr1_3:48866029-48866048 Msa0122320:intron 30.0%
!!! CTCTGAAATTTTCCCATATT+AGG + chr1_3:48866044-48866063 None:intergenic 30.0%
AATATGGGAAAATTTCAGAG+TGG - chr1_3:48866044-48866063 Msa0122320:intron 30.0%
AAATTGCAAAGGAAGTAACT+AGG - chr1_3:48866231-48866250 Msa0122320:intron 30.0%
ATGAAAAACAATCTGAGCAA+TGG - chr1_3:48866257-48866276 Msa0122320:intron 30.0%
! CTAGAGTATCCTTTAAATCT+AGG + chr1_3:48866302-48866321 None:intergenic 30.0%
CTACGTCTATTTAAGTCAAA+CGG + chr1_3:48866392-48866411 None:intergenic 30.0%
! CATGTATTAGTAGTTTGTCA+AGG - chr1_3:48866693-48866712 Msa0122320:CDS 30.0%
ACTTCGTAATGATCGATATA+TGG - chr1_3:48866781-48866800 Msa0122320:CDS 30.0%
! AATTCTAGAAGCACAATATC+TGG - chr1_3:48866869-48866888 Msa0122320:CDS 30.0%
! ACAACACTTTTATCTCTAAG+GGG + chr1_3:48867040-48867059 None:intergenic 30.0%
GTATCAAATGAAAACACTGT+TGG - chr1_3:48867079-48867098 Msa0122320:CDS 30.0%
AAAATTCAATGCAAGAGGTT+AGG - chr1_3:48867188-48867207 Msa0122320:CDS 30.0%
! TAATTGGCTTATGTGATATG+AGG + chr1_3:48867333-48867352 None:intergenic 30.0%
AAATTGCCAAATCTATGATC+TGG - chr1_3:48867427-48867446 Msa0122320:CDS 30.0%
GTGTTGAACTCAATATCTAA+TGG - chr1_3:48867449-48867468 Msa0122320:CDS 30.0%
! CTTTTATCTGATCATCATAC+AGG - chr1_3:48867609-48867628 Msa0122320:CDS 30.0%
! ACATTTTGTGAAGTTATCAG+AGG - chr1_3:48867789-48867808 Msa0122320:CDS 30.0%
TTCTCAACGATCAATTATTC+TGG - chr1_3:48867824-48867843 Msa0122320:CDS 30.0%
!! TCATCTTGTTCTGAATGTTT+TGG - chr1_3:48868070-48868089 Msa0122320:CDS 30.0%
ATGAATCCAAATATAAGGTG+AGG + chr1_3:48868174-48868193 None:intergenic 30.0%
TATGGACATCCTATATATGA+AGG - chr1_3:48868299-48868318 Msa0122320:CDS 30.0%
ATGGTATGTAATGTAGAAAG+TGG - chr1_3:48868452-48868471 Msa0122320:CDS 30.0%
TGTATATACTAAGACCTCAA+AGG + chr1_3:48868637-48868656 None:intergenic 30.0%
TGTTTCGTTTAACAGTTGAT+TGG - chr1_3:48868978-48868997 Msa0122320:intron 30.0%
!!! TGATGTTTGTGCCTTTTTTT+TGG - chr1_3:48869031-48869050 Msa0122320:intron 30.0%
CAACAAGGAAACCAAAAAAA+AGG + chr1_3:48869045-48869064 None:intergenic 30.0%
!! GTATCTTCTGAAATGTTAGA+AGG - chr1_3:48869180-48869199 Msa0122320:intron 30.0%
! CATTTTTGATCCAAAAGGTT+TGG + chr1_3:48869490-48869509 None:intergenic 30.0%
AGAGATGACATTGATGTAAT+AGG - chr1_3:48869618-48869637 Msa0122320:five_prime_UTR 30.0%
CTAGTGATGTAAATCAAGTA+GGG - chr1_3:48869742-48869761 Msa0122320:five_prime_UTR 30.0%
GATTCCAATCTAGAAGAATA+TGG - chr1_3:48869889-48869908 Msa0122320:five_prime_UTR 30.0%
CATTAATGGAGAGACGTTAT+TGG + chr1_3:48864034-48864053 None:intergenic 35.0%
!! AGTAGTGGGTAAGAATAATG+TGG + chr1_3:48864066-48864085 None:intergenic 35.0%
! TCATCTTTTATGATTCGCCA+TGG - chr1_3:48864314-48864333 Msa0122320:CDS 35.0%
!! GTGAGATTTGATTTTGTCCA+TGG + chr1_3:48864334-48864353 None:intergenic 35.0%
ATTGAATTGCAGCATCTTTG+TGG - chr1_3:48864552-48864571 Msa0122320:CDS 35.0%
AAATCTTCTAAACAATCGGG+TGG - chr1_3:48865312-48865331 Msa0122320:intron 35.0%
TCAATCTAGCTATAACACCT+GGG + chr1_3:48865401-48865420 None:intergenic 35.0%
ATCAATCTAGCTATAACACC+TGG + chr1_3:48865402-48865421 None:intergenic 35.0%
! AGGTGTTATAGCTAGATTGA+TGG - chr1_3:48865401-48865420 Msa0122320:intron 35.0%
! GGTGTTATAGCTAGATTGAT+GGG - chr1_3:48865402-48865421 Msa0122320:intron 35.0%
! CTGCTTCGATTTTTCTCTAA+AGG + chr1_3:48865492-48865511 None:intergenic 35.0%
TTAGAGAAAAATCGAAGCAG+AGG - chr1_3:48865492-48865511 Msa0122320:intron 35.0%
AAGGGATCAGGAAGAATTTA+AGG - chr1_3:48865551-48865570 Msa0122320:intron 35.0%
TCATCTTCAGATTTGAAGGA+CGG - chr1_3:48865621-48865640 Msa0122320:intron 35.0%
TCATGTAGAACCAACCAATA+TGG - chr1_3:48865857-48865876 Msa0122320:CDS 35.0%
TCAAAGTTCTCCATATTGGT+TGG + chr1_3:48865870-48865889 None:intergenic 35.0%
ACAACAATCTTTGACGATCT+AGG + chr1_3:48866014-48866033 None:intergenic 35.0%
AGAAAATTATGCGGAGAACA+AGG + chr1_3:48866089-48866108 None:intergenic 35.0%
TGTTCTGGCAGAAAATTATG+CGG + chr1_3:48866098-48866117 None:intergenic 35.0%
! CATAATTTTCTGCCAGAACA+TGG - chr1_3:48866098-48866117 Msa0122320:intron 35.0%
! GTCTTTTAGGCACAATTCTT+TGG - chr1_3:48866199-48866218 Msa0122320:intron 35.0%
GGAATCTAGAGAAATTGCAA+AGG - chr1_3:48866220-48866239 Msa0122320:intron 35.0%
TCTTCCTCTCCTAGATTTAA+AGG - chr1_3:48866290-48866309 Msa0122320:intron 35.0%
GTATCCTTTAAATCTAGGAG+AGG + chr1_3:48866297-48866316 None:intergenic 35.0%
!! AAAGTTGCTGTTATTTCCTC+TGG + chr1_3:48866362-48866381 None:intergenic 35.0%
AGAGGAAATAACAGCAACTT+TGG - chr1_3:48866361-48866380 Msa0122320:intron 35.0%
GAGGAAATAACAGCAACTTT+GGG - chr1_3:48866362-48866381 Msa0122320:intron 35.0%
ACTTAAATAGACGTAGCAGA+CGG - chr1_3:48866396-48866415 Msa0122320:intron 35.0%
CAAAGAAGAGATTATCAGAG+AGG - chr1_3:48866456-48866475 Msa0122320:intron 35.0%
! AATGATAAGTTTGCTCGCAA+CGG - chr1_3:48866611-48866630 Msa0122320:intron 35.0%
AAGAGTCTTGATCATAGACA+TGG - chr1_3:48866842-48866861 Msa0122320:CDS 35.0%
TTATCCGAAGAAGATTCAGA+AGG + chr1_3:48867106-48867125 None:intergenic 35.0%
TTCTGAATCTTCTTCGGATA+AGG - chr1_3:48867105-48867124 Msa0122320:CDS 35.0%
CGAAGAAAATTCAATGCAAG+AGG - chr1_3:48867183-48867202 Msa0122320:CDS 35.0%
TTTGGCAATTTCATAGCTAG+AGG + chr1_3:48867418-48867437 None:intergenic 35.0%
TCAACACCAGATCATAGATT+TGG + chr1_3:48867436-48867455 None:intergenic 35.0%
AAGCAGACAAAAGACAAGAA+AGG + chr1_3:48867561-48867580 None:intergenic 35.0%
GACAGATCATCTGTAAAAGA+AGG + chr1_3:48868052-48868071 None:intergenic 35.0%
TGTAGACCTCACCTTATATT+TGG - chr1_3:48868165-48868184 Msa0122320:CDS 35.0%
GGAAATTATGAGAAAACACG+TGG + chr1_3:48868229-48868248 None:intergenic 35.0%
TCCATACCATAGACATCAAT+AGG - chr1_3:48868246-48868265 Msa0122320:CDS 35.0%
ACCTATTGATGTCTATGGTA+TGG + chr1_3:48868250-48868269 None:intergenic 35.0%
TAGTCACCTATTGATGTCTA+TGG + chr1_3:48868255-48868274 None:intergenic 35.0%
AAGAATGTGGCAAGCTAAAA+AGG + chr1_3:48868396-48868415 None:intergenic 35.0%
TTCAATTTGCATGGTAGTCA+TGG - chr1_3:48868433-48868452 Msa0122320:CDS 35.0%
TCAATCTCTTAATGCCTTTG+AGG - chr1_3:48868620-48868639 Msa0122320:intron 35.0%
TTGTTAAGATATACACCCTC+CGG + chr1_3:48868795-48868814 None:intergenic 35.0%
AGCAACAAATTCATTTGTGC+TGG + chr1_3:48868888-48868907 None:intergenic 35.0%
! TGTTTCTGTGTTTGAAGATC+TGG - chr1_3:48869335-48869354 Msa0122320:intron 35.0%
TGTTTGAAGATCTGGAAGAT+AGG - chr1_3:48869343-48869362 Msa0122320:intron 35.0%
! GTGATTTGACAACTTGTTCA+AGG - chr1_3:48869370-48869389 Msa0122320:intron 35.0%
TGACAATTCCTGAATTGATG+CGG + chr1_3:48869419-48869438 None:intergenic 35.0%
GATTTAGTGGCAGAAATAGT+CGG - chr1_3:48869669-48869688 Msa0122320:five_prime_UTR 35.0%
! ATCTAGAAATTTTGTACCCC+CGG - chr1_3:48869693-48869712 Msa0122320:five_prime_UTR 35.0%
CCTACTTGATTTACATCACT+AGG + chr1_3:48869744-48869763 None:intergenic 35.0%
CCTAGTGATGTAAATCAAGT+AGG - chr1_3:48869741-48869760 Msa0122320:five_prime_UTR 35.0%
GAGGATGTGAATAAGTTTAG+TGG - chr1_3:48869831-48869850 Msa0122320:five_prime_UTR 35.0%
AAATTGAAGAGAGCTAACCA+TGG - chr1_3:48869854-48869873 Msa0122320:five_prime_UTR 35.0%
AGAGACGTTATTGGAAGAGT+GGG + chr1_3:48864025-48864044 None:intergenic 40.0%
!! TGTGGAGAGAGAAGCATTAA+TGG + chr1_3:48864048-48864067 None:intergenic 40.0%
GGAGAATAGTGAGGTGATAT+TGG + chr1_3:48864236-48864255 None:intergenic 40.0%
GCTGAAACTGAAGTTACAGA+GGG + chr1_3:48864402-48864421 None:intergenic 40.0%
AGCTGAAACTGAAGTTACAG+AGG + chr1_3:48864403-48864422 None:intergenic 40.0%
! TAACTTTTCTGCGGTGGTAT+CGG - chr1_3:48864733-48864752 Msa0122320:CDS 40.0%
TCATAAACAGCAACAGCATC+CGG - chr1_3:48865029-48865048 Msa0122320:intron 40.0%
CTAGAATCAGGAGAGAAATC+CGG + chr1_3:48865051-48865070 None:intergenic 40.0%
!! TCTCCTGATTCTAGTTTCTC+CGG - chr1_3:48865057-48865076 Msa0122320:intron 40.0%
CAAGGTTGCAGAGAAAGATT+CGG - chr1_3:48865083-48865102 Msa0122320:intron 40.0%
CAATCTAGCTATAACACCTG+GGG + chr1_3:48865400-48865419 None:intergenic 40.0%
! TTGTTATTAGGCTGCTGAGA+TGG + chr1_3:48865441-48865460 None:intergenic 40.0%
!! TCCTTGTGCTGCTTGTTATT+AGG + chr1_3:48865453-48865472 None:intergenic 40.0%
GAAAAATCGAAGCAGAGGAA+CGG - chr1_3:48865497-48865516 Msa0122320:intron 40.0%
GAAAATCTTGATACGTCGCT+AGG + chr1_3:48865695-48865714 None:intergenic 40.0%
AGAGTTCCATGATACACTTG+AGG - chr1_3:48865725-48865744 Msa0122320:intron 40.0%
!! ATTGGTTGGTTCTACATGAC+CGG + chr1_3:48865856-48865875 None:intergenic 40.0%
TCAGCATGATTTCCATGTTC+TGG + chr1_3:48866113-48866132 None:intergenic 40.0%
TAAATTTGCCTGACAGTGCA+AGG - chr1_3:48866177-48866196 Msa0122320:intron 40.0%
ATAGTTCAAGCAGTGCTTCT+GGG - chr1_3:48866327-48866346 Msa0122320:intron 40.0%
ACAGATGATTCACTAGAACG+CGG + chr1_3:48866425-48866444 None:intergenic 40.0%
TGAATCATCTGTGAGTAGAG+AGG - chr1_3:48866433-48866452 Msa0122320:intron 40.0%
AGAAGAGATTATCAGAGAGG+TGG - chr1_3:48866459-48866478 Msa0122320:intron 40.0%
ATTATCAGAGAGGTGGAAGA+TGG - chr1_3:48866466-48866485 Msa0122320:intron 40.0%
TTCCCTGGTAAGAGAATGAA+GGG - chr1_3:48866551-48866570 Msa0122320:intron 40.0%
TACCCTTCATTCTCTTACCA+GGG + chr1_3:48866556-48866575 None:intergenic 40.0%
! TGATCGATATATGGTGCCAA+AGG - chr1_3:48866790-48866809 Msa0122320:CDS 40.0%
TATCTGGTCACAAGAAGTCT+TGG - chr1_3:48866885-48866904 Msa0122320:CDS 40.0%
GGGTGAATCTTCTTCAAGAT+TGG + chr1_3:48866984-48867003 None:intergenic 40.0%
AGAAGATTCACCCAATCTTG+AGG - chr1_3:48866991-48867010 Msa0122320:CDS 40.0%
! TTTATCTCTAAGGGGCTCAA+AGG + chr1_3:48867032-48867051 None:intergenic 40.0%
TAAGGTTCTTCCTGGATCAT+CGG - chr1_3:48867123-48867142 Msa0122320:CDS 40.0%
! TGTCGCCTTTTACTAAGACA+CGG + chr1_3:48867150-48867169 None:intergenic 40.0%
ATATTTCAGGACGTATCAGC+TGG - chr1_3:48867923-48867942 Msa0122320:CDS 40.0%
TGATCAGCATCTTTACAGCA+TGG + chr1_3:48868004-48868023 None:intergenic 40.0%
TCAAGAACTGAGATTGGACT+GGG + chr1_3:48868028-48868047 None:intergenic 40.0%
ATCAAGAACTGAGATTGGAC+TGG + chr1_3:48868029-48868048 None:intergenic 40.0%
GAAGGATCAAGAACTGAGAT+TGG + chr1_3:48868034-48868053 None:intergenic 40.0%
TACCAGTTTCCTTACCTTGT+AGG + chr1_3:48868111-48868130 None:intergenic 40.0%
! ATAGCAAGGGTGTGTTTCAT+GGG - chr1_3:48868556-48868575 Msa0122320:CDS 40.0%
GTCTTAGTATATACACCCTC+CGG - chr1_3:48868642-48868661 Msa0122320:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr1_3:48868777-48868796 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr1_3:48868776-48868795 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1_3:48868776-48868795 Msa0122320:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1_3:48868777-48868796 Msa0122320:intron 40.0%
! GAAAGGTTTGAAGCAGAAGA+TGG + chr1_3:48868922-48868941 None:intergenic 40.0%
TCGTCACTTGAAACTAGCAT+AGG + chr1_3:48869147-48869166 None:intergenic 40.0%
! CTAGTTTCAAGTGACGAAGA+TGG - chr1_3:48869150-48869169 Msa0122320:intron 40.0%
TATGGAGAACTGAAGATAGC+TGG - chr1_3:48869211-48869230 Msa0122320:intron 40.0%
ATGGAGAACTGAAGATAGCT+GGG - chr1_3:48869212-48869231 Msa0122320:intron 40.0%
CAAACACAGAAACACTCACA+GGG + chr1_3:48869329-48869348 None:intergenic 40.0%
TCAAACACAGAAACACTCAC+AGG + chr1_3:48869330-48869349 None:intergenic 40.0%
! CAACTTGTTCAAGGTCTGAA+AGG - chr1_3:48869379-48869398 Msa0122320:intron 40.0%
! AGAAATGCAGCCAAACCTTT+TGG - chr1_3:48869477-48869496 Msa0122320:intron 40.0%
!! ATGATTAACGGGCTTCAAGA+TGG - chr1_3:48869507-48869526 Msa0122320:CDS 40.0%
! ATGGTCTTTTCCAGATGCTA+GGG - chr1_3:48869526-48869545 Msa0122320:CDS 40.0%
! TCTAGAAATTTTGTACCCCC+GGG - chr1_3:48869694-48869713 Msa0122320:five_prime_UTR 40.0%
CATCACTAGGAAACATCCTA+AGG + chr1_3:48869731-48869750 None:intergenic 40.0%
CTAACCATGGTAAATCAGCT+TGG - chr1_3:48869867-48869886 Msa0122320:five_prime_UTR 40.0%
! GAATCCAAGCTGATTTACCA+TGG + chr1_3:48869874-48869893 None:intergenic 40.0%
GAGAGACGTTATTGGAAGAG+TGG + chr1_3:48864026-48864045 None:intergenic 45.0%
! AAAGGGTGTGTAGCAGTAGT+GGG + chr1_3:48864080-48864099 None:intergenic 45.0%
! GAAAAAGTGTGGAGCGTGAT+AGG + chr1_3:48864196-48864215 None:intergenic 45.0%
AGAACAAAAACCCTAGGAGG+AGG + chr1_3:48864263-48864282 None:intergenic 45.0%
GAGAGAACAAAAACCCTAGG+AGG + chr1_3:48864266-48864285 None:intergenic 45.0%
GACGAGAGAACAAAAACCCT+AGG + chr1_3:48864269-48864288 None:intergenic 45.0%
AGGAAGATGAAGCTTGGAGT+TGG + chr1_3:48864361-48864380 None:intergenic 45.0%
TCCAAGCTTCATCTTCCTCA+AGG - chr1_3:48864363-48864382 Msa0122320:CDS 45.0%
ACCTTGAGGAAGATGAAGCT+TGG + chr1_3:48864367-48864386 None:intergenic 45.0%
CTTCTCTTGGATTCAGTTGC+TGG + chr1_3:48865375-48865394 None:intergenic 45.0%
! GCTAGATTGATGGGTCTTGA+CGG - chr1_3:48865411-48865430 Msa0122320:intron 45.0%
GCCTAATAACAAGCAGCACA+AGG - chr1_3:48865449-48865468 Msa0122320:intron 45.0%
ACCTACCACTCTCTACCTTT+GGG + chr1_3:48865599-48865618 None:intergenic 45.0%
TACCTACCACTCTCTACCTT+TGG + chr1_3:48865600-48865619 None:intergenic 45.0%
ACCCCTTTCCAATCACATTC+CGG - chr1_3:48865834-48865853 Msa0122320:CDS 45.0%
ACCGGAATGTGATTGGAAAG+GGG + chr1_3:48865838-48865857 None:intergenic 45.0%
GACCGGAATGTGATTGGAAA+GGG + chr1_3:48865839-48865858 None:intergenic 45.0%
TGACCGGAATGTGATTGGAA+AGG + chr1_3:48865840-48865859 None:intergenic 45.0%
CTACATGACCGGAATGTGAT+TGG + chr1_3:48865845-48865864 None:intergenic 45.0%
CAACAGGGGTGAATTACAAC+AGG - chr1_3:48865922-48865941 Msa0122320:CDS 45.0%
!! TTTCATCAGAAGCATCGCGA+TGG - chr1_3:48865945-48865964 Msa0122320:intron 45.0%
! AAGCATCGCGATGGTTATCA+TGG - chr1_3:48865954-48865973 Msa0122320:intron 45.0%
! TCGCACGTCTTTTGTCGAAT+TGG + chr1_3:48865980-48865999 None:intergenic 45.0%
CTAAAAGACCTTGCACTGTC+AGG + chr1_3:48866188-48866207 None:intergenic 45.0%
! CTGACAGTGCAAGGTCTTTT+AGG - chr1_3:48866186-48866205 Msa0122320:intron 45.0%
GATAGTTCAAGCAGTGCTTC+TGG - chr1_3:48866326-48866345 Msa0122320:intron 45.0%
! TTCTGGGAATGAATCTCCAG+AGG - chr1_3:48866343-48866362 Msa0122320:intron 45.0%
GTTCCCTGGTAAGAGAATGA+AGG - chr1_3:48866550-48866569 Msa0122320:intron 45.0%
GTACCCTTCATTCTCTTACC+AGG + chr1_3:48866557-48866576 None:intergenic 45.0%
AGTGGTTCAACCAACTCAGA+AGG + chr1_3:48866641-48866660 None:intergenic 45.0%
!! TTCTGAGTTGGTTGAACCAC+TGG - chr1_3:48866640-48866659 Msa0122320:intron 45.0%
!! TCTGAGTTGGTTGAACCACT+GGG - chr1_3:48866641-48866660 Msa0122320:intron 45.0%
CCAAAGACAGTAGATGAAGC+AGG + chr1_3:48866731-48866750 None:intergenic 45.0%
CCTGCTTCATCTACTGTCTT+TGG - chr1_3:48866728-48866747 Msa0122320:CDS 45.0%
TCAGCACGCAAGAATGTTCT+AGG + chr1_3:48866758-48866777 None:intergenic 45.0%
! TGGTGCCAAAGGACCTTAAA+CGG - chr1_3:48866801-48866820 Msa0122320:CDS 45.0%
TTCACCCAATCTTGAGGTTC+AGG - chr1_3:48866997-48867016 Msa0122320:CDS 45.0%
TGGGCCTTCTGAATCTTCTT+CGG - chr1_3:48867099-48867118 Msa0122320:CDS 45.0%
TCTTCGGATAAGGTTCTTCC+TGG - chr1_3:48867115-48867134 Msa0122320:CDS 45.0%
! GTCGCCTTTTACTAAGACAC+GGG + chr1_3:48867149-48867168 None:intergenic 45.0%
TTGCGCAAAACGTGTAGTGA+AGG + chr1_3:48867534-48867553 None:intergenic 45.0%
GACCTACAAGGTAAGGAAAC+TGG - chr1_3:48868106-48868125 Msa0122320:CDS 45.0%
CATGAAACACACCCTTGCTA+TGG + chr1_3:48868557-48868576 None:intergenic 45.0%
! CATAGCAAGGGTGTGTTTCA+TGG - chr1_3:48868555-48868574 Msa0122320:CDS 45.0%
CAGATTCCAACTTCAGCAAC+TGG + chr1_3:48869107-48869126 None:intergenic 45.0%
GTTGGAATCTGAAGACCATG+TGG - chr1_3:48869116-48869135 Msa0122320:intron 45.0%
GAATCTGAAGACCATGTGGA+GGG - chr1_3:48869120-48869139 Msa0122320:intron 45.0%
! CTTTTCGACCGCATCAATTC+AGG - chr1_3:48869408-48869427 Msa0122320:intron 45.0%
! GATGGTCTTTTCCAGATGCT+AGG - chr1_3:48869525-48869544 Msa0122320:CDS 45.0%
CATCATCCTCTACCTTTCCT+TGG + chr1_3:48869554-48869573 None:intergenic 45.0%
AAAGGTAGAGGATGATGTCC+TGG - chr1_3:48869557-48869576 Msa0122320:five_prime_UTR 45.0%
AAGGTAGAGGATGATGTCCT+GGG - chr1_3:48869558-48869577 Msa0122320:five_prime_UTR 45.0%
! AGTTGCTGATTGAGGAGTCT+CGG - chr1_3:48869583-48869602 Msa0122320:five_prime_UTR 45.0%
TAAGGACAACTATTCTCCCG+GGG + chr1_3:48869713-48869732 None:intergenic 45.0%
CTAAGGACAACTATTCTCCC+GGG + chr1_3:48869714-48869733 None:intergenic 45.0%
CCTAAGGACAACTATTCTCC+CGG + chr1_3:48869715-48869734 None:intergenic 45.0%
!! AATTAAATTAAAAAAGTAAA+AGG + chr1_3:48864490-48864509 None:intergenic 5.0%
AGAGAGAGGTGAGAGAGTGA+GGG + chr1_3:48863994-48864013 None:intergenic 50.0%
! GAAAGGGTGTGTAGCAGTAG+TGG + chr1_3:48864081-48864100 None:intergenic 50.0%
ACAAAAACCCTAGGAGGAGG+AGG + chr1_3:48864260-48864279 None:intergenic 50.0%
AGAAATGGCGCAGATCGAGA+AGG + chr1_3:48864294-48864313 None:intergenic 50.0%
!! GATGAAGCTTGGAGTTGGTG+CGG + chr1_3:48864356-48864375 None:intergenic 50.0%
GGAGAAAGAGAGTGACCTTG+AGG + chr1_3:48864381-48864400 None:intergenic 50.0%
CCACCGGAGAAACTAGAATC+AGG + chr1_3:48865063-48865082 None:intergenic 50.0%
!! CCTGATTCTAGTTTCTCCGG+TGG - chr1_3:48865060-48865079 Msa0122320:intron 50.0%
!! TTCTAGTTTCTCCGGTGGCA+AGG - chr1_3:48865065-48865084 Msa0122320:intron 50.0%
TTTCTCTGCAACCTTGCCAC+CGG + chr1_3:48865079-48865098 None:intergenic 50.0%
GAATCCAAGAGAAGATCCCC+AGG - chr1_3:48865381-48865400 Msa0122320:intron 50.0%
AACACCTGGGGATCTTCTCT+TGG + chr1_3:48865388-48865407 None:intergenic 50.0%
AGCAGAGGAACGGCAAATGA+CGG - chr1_3:48865507-48865526 Msa0122320:intron 50.0%
TTGAGCTCCTCCTAGACGAT+CGG + chr1_3:48865533-48865552 None:intergenic 50.0%
ATCGTCTAGGAGGAGCTCAA+GGG - chr1_3:48865533-48865552 Msa0122320:intron 50.0%
TGAGGTCTCAGAGATCCCAA+AGG - chr1_3:48865581-48865600 Msa0122320:intron 50.0%
GAGATCCCAAAGGTAGAGAG+TGG - chr1_3:48865591-48865610 Msa0122320:intron 50.0%
TCCCAAAGGTAGAGAGTGGT+AGG - chr1_3:48865595-48865614 Msa0122320:intron 50.0%
TTGATACGTCGCTAGGCGTT+TGG + chr1_3:48865688-48865707 None:intergenic 50.0%
CCAACGCCTCAAGTGTATCA+TGG + chr1_3:48865734-48865753 None:intergenic 50.0%
CCATGATACACTTGAGGCGT+TGG - chr1_3:48865731-48865750 Msa0122320:intron 50.0%
!! TGAGGCGTTGGACTCTAACA+AGG - chr1_3:48865743-48865762 Msa0122320:intron 50.0%
AGGTCAGATAGGGAGTCAAC+AGG - chr1_3:48865906-48865925 Msa0122320:CDS 50.0%
GGTCAGATAGGGAGTCAACA+GGG - chr1_3:48865907-48865926 Msa0122320:CDS 50.0%
GTCAGATAGGGAGTCAACAG+GGG - chr1_3:48865908-48865927 Msa0122320:CDS 50.0%
GATGGCACACAAGTCTCAAG+AGG - chr1_3:48866484-48866503 Msa0122320:intron 50.0%
! CACAAGTCTCAAGAGGTGCA+AGG - chr1_3:48866491-48866510 Msa0122320:intron 50.0%
TCATTGAAACCTTCCCCGCT+AGG + chr1_3:48866596-48866615 None:intergenic 50.0%
GTATCAGCAGCAAGGATGGT+TGG - chr1_3:48866663-48866682 Msa0122320:intron 50.0%
GGTGCCAAAGGACCTTAAAC+GGG - chr1_3:48866802-48866821 Msa0122320:CDS 50.0%
! CTCTCCCGTTTAAGGTCCTT+TGG + chr1_3:48866809-48866828 None:intergenic 50.0%
CAAAGGACCTTAAACGGGAG+AGG - chr1_3:48866807-48866826 Msa0122320:CDS 50.0%
CTCTTCTCCTCTCCCGTTTA+AGG + chr1_3:48866817-48866836 None:intergenic 50.0%
GTCTGTGCATTCACTGAAGC+AGG - chr1_3:48866907-48866926 Msa0122320:CDS 50.0%
GGAGCCTGAACCTCAAGATT+GGG + chr1_3:48867004-48867023 None:intergenic 50.0%
AGGAGCCTGAACCTCAAGAT+TGG + chr1_3:48867005-48867024 None:intergenic 50.0%
CTAAGGGGCTCAAAGGTTTC+AGG + chr1_3:48867025-48867044 None:intergenic 50.0%
TCGGCCCGTGTCTTAGTAAA+AGG - chr1_3:48867142-48867161 Msa0122320:CDS 50.0%
!! GACGTATCAGCTGGTTCTAC+TGG - chr1_3:48867932-48867951 Msa0122320:CDS 50.0%
!! GTATCAGCTGGTTCTACTGG+TGG - chr1_3:48867935-48867954 Msa0122320:CDS 50.0%
GGAGATTCATGTCCAGGTAC+AGG + chr1_3:48867983-48868002 None:intergenic 50.0%
CAGCATGGAGATTCATGTCC+AGG + chr1_3:48867989-48868008 None:intergenic 50.0%
!! AGTGTCAGTGCTGACCTACA+AGG - chr1_3:48868094-48868113 Msa0122320:CDS 50.0%
!! CAGTGCTGACCTACAAGGTA+AGG - chr1_3:48868099-48868118 Msa0122320:CDS 50.0%
GCAACTCCAGTTGCTGAAGT+TGG - chr1_3:48869098-48869117 Msa0122320:intron 50.0%
GGAATCTGAAGACCATGTGG+AGG - chr1_3:48869119-48869138 Msa0122320:intron 50.0%
TTCAAGTGACGAAGATGGCG+TGG - chr1_3:48869155-48869174 Msa0122320:intron 50.0%
AATCTACTGACCCACAGCCA+TGG - chr1_3:48869451-48869470 Msa0122320:intron 50.0%
ATCTACTGACCCACAGCCAT+GGG - chr1_3:48869452-48869471 Msa0122320:intron 50.0%
CATTTCTCACCCATGGCTGT+GGG + chr1_3:48869464-48869483 None:intergenic 50.0%
TTGGCTGCATTTCTCACCCA+TGG + chr1_3:48869471-48869490 None:intergenic 50.0%
TTCCAGATGCTAGGGAACCA+AGG - chr1_3:48869534-48869553 Msa0122320:CDS 50.0%
TTCCTTGGTTCCCTAGCATC+TGG + chr1_3:48869539-48869558 None:intergenic 50.0%
GATGCTAGGGAACCAAGGAA+AGG - chr1_3:48869539-48869558 Msa0122320:exon 50.0%
AGGGAACCAAGGAAAGGTAG+AGG - chr1_3:48869545-48869564 Msa0122320:exon 50.0%
AAGGACAACTATTCTCCCGG+GGG + chr1_3:48869712-48869731 None:intergenic 50.0%
CCGGGAGAATAGTTGTCCTT+AGG - chr1_3:48869712-48869731 Msa0122320:five_prime_UTR 50.0%
TGAGAGAGTGAGGGAGAGTG+GGG + chr1_3:48863985-48864004 None:intergenic 55.0%
GTGAGAGAGTGAGGGAGAGT+GGG + chr1_3:48863986-48864005 None:intergenic 55.0%
GAGAGAGAGGTGAGAGAGTG+AGG + chr1_3:48863995-48864014 None:intergenic 55.0%
AGTGGGTGTGAGAGAGAGAG+AGG + chr1_3:48864008-48864027 None:intergenic 55.0%
GGAGGAGGAGGAGAATAGTG+AGG + chr1_3:48864245-48864264 None:intergenic 55.0%
ATTCTCCTCCTCCTCCTCCT+AGG - chr1_3:48864249-48864268 Msa0122320:CDS 55.0%
TTCTCCTCCTCCTCCTCCTA+GGG - chr1_3:48864250-48864269 Msa0122320:CDS 55.0%
AAAACCCTAGGAGGAGGAGG+AGG + chr1_3:48864257-48864276 None:intergenic 55.0%
CAAATGACGGCCGATCGTCT+AGG - chr1_3:48865520-48865539 Msa0122320:intron 55.0%
GATCGTCTAGGAGGAGCTCA+AGG - chr1_3:48865532-48865551 Msa0122320:intron 55.0%
TAGGAGGAGCTCAAGGGATC+AGG - chr1_3:48865539-48865558 Msa0122320:intron 55.0%
GCTGATATGCTAGCGTTCCC+TGG - chr1_3:48866536-48866555 Msa0122320:intron 55.0%
!! CGTTTTGACAGCCTGCCTAG+CGG - chr1_3:48866578-48866597 Msa0122320:intron 55.0%
!! GTTTTGACAGCCTGCCTAGC+GGG - chr1_3:48866579-48866598 Msa0122320:intron 55.0%
! TTTTGACAGCCTGCCTAGCG+GGG - chr1_3:48866580-48866599 Msa0122320:intron 55.0%
CAACGGCGAACCTTCTGAGT+TGG - chr1_3:48866628-48866647 Msa0122320:intron 55.0%
ACCACTGGGTATCAGCAGCA+AGG - chr1_3:48866655-48866674 Msa0122320:intron 55.0%
TCCTTGCTGCTGATACCCAG+TGG + chr1_3:48866659-48866678 None:intergenic 55.0%
CTGGGTATCAGCAGCAAGGA+TGG - chr1_3:48866659-48866678 Msa0122320:intron 55.0%
TCAGCAGCAAGGATGGTTGG+AGG - chr1_3:48866666-48866685 Msa0122320:intron 55.0%
CAGCAGCAAGGATGGTTGGA+GGG - chr1_3:48866667-48866686 Msa0122320:intron 55.0%
CAGGTACAGGTGCTTCAGAG+AGG + chr1_3:48867970-48867989 None:intergenic 55.0%
!! CTCTCTGAAGCACCTGTACC+TGG - chr1_3:48867968-48867987 Msa0122320:CDS 55.0%
CTAGCATAGGTCCCTCCACA+TGG + chr1_3:48869134-48869153 None:intergenic 55.0%
GCATTTCTCACCCATGGCTG+TGG + chr1_3:48869465-48869484 None:intergenic 55.0%
CCTCAATCAGCAACTTGCCC+AGG + chr1_3:48869578-48869597 None:intergenic 55.0%
! CCTGGGCAAGTTGCTGATTG+AGG - chr1_3:48869575-48869594 Msa0122320:five_prime_UTR 55.0%
! TGCTGATTGAGGAGTCTCGG+TGG - chr1_3:48869586-48869605 Msa0122320:five_prime_UTR 55.0%
GGTGAGAGAGTGAGGGAGAG+TGG + chr1_3:48863987-48864006 None:intergenic 60.0%
ATGACGGCCGATCGTCTAGG+AGG - chr1_3:48865523-48865542 Msa0122320:intron 60.0%
! AAGAGGTGCAAGGCACCAGC+AGG - chr1_3:48866501-48866520 Msa0122320:intron 60.0%
CACCAGCAGGAGCAGCACAT+TGG - chr1_3:48866514-48866533 Msa0122320:intron 60.0%
! AGCCAATGTGCTGCTCCTGC+TGG + chr1_3:48866519-48866538 None:intergenic 60.0%
TGAAACCTTCCCCGCTAGGC+AGG + chr1_3:48866592-48866611 None:intergenic 60.0%
AAGACACGGGCCGATGATCC+AGG + chr1_3:48867136-48867155 None:intergenic 60.0%
GACAGCCTGCCTAGCGGGGA+AGG - chr1_3:48866584-48866603 Msa0122320:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48863961 48869928 48863961 ID=Msa0122320;Name=Msa0122320
chr1_3 mRNA 48863961 48869928 48863961 ID=Msa0122320-mRNA-1;Parent=Msa0122320;Name=Msa0122320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=372|1|1|1|1|1|5|230|949
chr1_3 exon 48863961 48864801 48863961 ID=Msa0122320-mRNA-1:exon:14772;Parent=Msa0122320-mRNA-1
chr1_3 exon 48865774 48865957 48865774 ID=Msa0122320-mRNA-1:exon:14771;Parent=Msa0122320-mRNA-1
chr1_3 exon 48866685 48868598 48866685 ID=Msa0122320-mRNA-1:exon:14770;Parent=Msa0122320-mRNA-1
chr1_3 exon 48868785 48868873 48868785 ID=Msa0122320-mRNA-1:exon:14769;Parent=Msa0122320-mRNA-1
chr1_3 exon 48869505 48869928 48869505 ID=Msa0122320-mRNA-1:exon:14768;Parent=Msa0122320-mRNA-1
chr1_3 five_prime_UTR 48869557 48869928 48869557 ID=Msa0122320-mRNA-1:five_prime_utr;Parent=Msa0122320-mRNA-1
chr1_3 CDS 48869505 48869556 48869505 ID=Msa0122320-mRNA-1:cds;Parent=Msa0122320-mRNA-1
chr1_3 CDS 48868785 48868873 48868785 ID=Msa0122320-mRNA-1:cds;Parent=Msa0122320-mRNA-1
chr1_3 CDS 48866685 48868598 48866685 ID=Msa0122320-mRNA-1:cds;Parent=Msa0122320-mRNA-1
chr1_3 CDS 48865774 48865957 48865774 ID=Msa0122320-mRNA-1:cds;Parent=Msa0122320-mRNA-1
chr1_3 CDS 48864191 48864801 48864191 ID=Msa0122320-mRNA-1:cds;Parent=Msa0122320-mRNA-1
chr1_3 three_prime_UTR 48863961 48864190 48863961 ID=Msa0122320-mRNA-1:three_prime_utr;Parent=Msa0122320-mRNA-1
Gene Sequence

>Msa0122320

ATGGACAAAATCAAATCTCACCGCACCAACTCCAAGCTTCATCTTCCTCAAGGGAAAGAGCAGATTCATAAACAGCAACAGCATCCGGATTTCTCTCCTGATTCTAGTTTCTCCGGTGGCAAGGTTGCAGAGAAAGATTCGTTCTCATTTAAATTTGGGTGGAAATCTTCTAAACAATCGGGTGGAACTCCAATTAAGAAGTTATTAGCTGAAGAGATGTCACCAGCAACTGAATCCAAGAGAAGATCCCCAGGTGTTATAGCTAGATTGATGGGTCTTGACGGTCTTCCATCTCAGCAGCCTAATAACAAGCAGCACAAGGATCTACAGAAATCAACACCTTTAGAGAAAAATCGAAGCAGAGGAACGGCAAATGACGGCCGATCGTCTAGGAGGAGCTCAAGGGATCAGGAAGAATTTAAGGATGTATTTGAGGTCTCAGAGATCCCAAAGGTAGAGAGTGGTAGGTATTCATCTTCAGATTTGAAGGACGGTGAAGATGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTAGCGACGTATCAAGATTTTCAGTCTTCACAAGAGTTCCATGATACACTTGAGGCGTTGGACTCTAACAAGGATCTTCTGCTAAAATACTTCAAGCGGCCAGACTCTTTGTTTAAAAAGCATTTGAATGATCTGCAAGCTACCCCTTTCCAATCACATTCCGGTCATGTAGAACCAACCAATATGGAGAACTTTGAACATGATTTCAATTTGAGGTCAGATAGGGAGTCAACAGGGGTGAATTACAACAGGTTTCATCAGAAGCATCGCGATGGTTATCATGGCCAATTCGACAAAAGACGTGCGATGCATAATTCACCTAGATCGTCAAAGATTGTTGTCCTAAAACCTAATATGGGAAAATTTCAGAGTGGTACTAGAATTGAATCATCACCTTGTTCTCCGCATAATTTTCTGCCAGAACATGGAAATCATGCTGAATTTTCAGATGTCAGATTTAGAGATACTGAACTGTATCAAAAAATAAATTTGCCTGACAGTGCAAGGTCTTTTAGGCACAATTCTTTGGAATCTAGAGAAATTGCAAAGGAAGTAACTAGGCAAATGAAAAACAATCTGAGCAATGGTTGCATGATGTCTTCCTCTCCTAGATTTAAAGGATACTCTAGACATGATAGTTCAAGCAGTGCTTCTGGGAATGAATCTCCAGAGGAAATAACAGCAACTTTGGGTAAGCCGTTTGACTTAAATAGACGTAGCAGACGGTCACCGCGTTCTAGTGAATCATCTGTGAGTAGAGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAGATGGCACACAAGTCTCAAGAGGTGCAAGGCACCAGCAGGAGCAGCACATTGGCTGATATGCTAGCGTTCCCTGGTAAGAGAATGAAGGGTACACGTTTTGACAGCCTGCCTAGCGGGGAAGGTTTCAATGATAAGTTTGCTCGCAACGGCGAACCTTCTGAGTTGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAGGGATGCATGTATTAGTAGTTTGTCAAGGTCAAGATCTCTTCCTGCTTCATCTACTGTCTTTGGAAGTCCTAGAACATTCTTGCGTGCTGAAGCACTTCGTAATGATCGATATATGGTGCCAAAGGACCTTAAACGGGAGAGGAGAAGAGCGACAAAGAGTCTTGATCATAGACATGGTATGAATTCTAGAAGCACAATATCTGGTCACAAGAAGTCTTGGTCTGTGCATTCACTGAAGCAGGAAGTTAATGAGTTCTCTCCCGACTTAAATGAAGTTCAAAATAACACGAAGACCAATCTTGAAGAAGATTCACCCAATCTTGAGGTTCAGGCTCCTGAAACCTTTGAGCCCCTTAGAGATAAAAGTGTTGTTTGTGATGATGTTGCAGATGTATCAAATGAAAACACTGTTGGGCCTTCTGAATCTTCTTCGGATAAGGTTCTTCCTGGATCATCGGCCCGTGTCTTAGTAAAAGGCGACAGTAGTGTTGTTGACGAAGAAAATTCAATGCAAGAGGACGTATCAGCTGGTTCTACTGGTGGATTTTCAGTCCTCTCTGAAGCACCTGTACCTGGACATGAATCTCCATGCTGTAAAGATGCTGATCAACCCAGTCCAATCTCAGTTCTTGATCCTTCTTTTACAGATGATCTGTCATCTTGTTCTGAATGTTTTGGAAGTGTCAGTGCTGACCTACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGAAGACCATGTGGAGGGACCTATGCTAGTTTCAAGTGACGAAGATGGCGTGGAAGTATCTTCTGAAATGTTAGAAGGAAATACATTATGGAGAACTGAAGATAGCTGGGAGTCTTCTTACATTATTGATGTTTTGTCTGAATCTGCTATTGCTGATGCTCAAACTGATAATAATTTGGAAGTTTGGCAATCTCTAGAATGCCCTGTGAGTGTTTCTGTGTTTGAAGATCTGGAAGATAGGTACAGTGATTTGACAACTTGTTCAAGGTCTGAAAGGAGATTGCTTTTCGACCGCATCAATTCAGGAATTGTCAAGATTCATGAGCAATCTACTGACCCACAGCCATGGGTGAGAAATGCAGCCAAACCTTTTGGATCAAAAATGATTAACGGGCTTCAAGATGGTCTTTTCCAGATGCTAGGGAACCAAGGAAAGGTAGAGGATGATGTCCTGGGCAAGTTGCTGATTGAGGAGTCTCGGTGGTTGAAGTTGAGAGATGACATTGATGTAATAGGTAGAGAAGTTGAGAGATTGATAGTAGATGATTTAGTGGCAGAAATAGTCGGTATCTAG
Protein sequence

>Msa0122320

MDKIKSHRTNSKLHLPQGKEQIHKQQQHPDFSPDSSFSGGKVAEKDSFSFKFGWKSSKQSGGTPIKKLLAEEMSPATESKRRSPGVIARLMGLDGLPSQQPNNKQHKDLQKSTPLEKNRSRGTANDGRSSRRSSRDQEEFKDVFEVSEIPKVESGRYSSSDLKDGEDEMSFIEQKFMDAKRLATYQDFQSSQEFHDTLEALDSNKDLLLKYFKRPDSLFKKHLNDLQATPFQSHSGHVEPTNMENFEHDFNLRSDRESTGVNYNRFHQKHRDGYHGQFDKRRAMHNSPRSSKIVVLKPNMGKFQSGTRIESSPCSPHNFLPEHGNHAEFSDVRFRDTELYQKINLPDSARSFRHNSLESREIAKEVTRQMKNNLSNGCMMSSSPRFKGYSRHDSSSSASGNESPEEITATLGKPFDLNRRSRRSPRSSESSVSREAKKRLSERWKMAHKSQEVQGTSRSSTLADMLAFPGKRMKGTRFDSLPSGEGFNDKFARNGEPSELVEPLGISSKDGWRDACISSLSRSRSLPASSTVFGSPRTFLRAEALRNDRYMVPKDLKRERRRATKSLDHRHGMNSRSTISGHKKSWSVHSLKQEVNEFSPDLNEVQNNTKTNLEEDSPNLEVQAPETFEPLRDKSVVCDDVADVSNENTVGPSESSSDKVLPGSSARVLVKGDSSVVDEENSMQEDVSAGSTGGFSVLSEAPVPGHESPCCKDADQPSPISVLDPSFTDDLSSCSECFGSVSADLQGLRMQLQLLKLESEDHVEGPMLVSSDEDGVEVSSEMLEGNTLWRTEDSWESSYIIDVLSESAIADAQTDNNLEVWQSLECPVSVSVFEDLEDRYSDLTTCSRSERRLLFDRINSGIVKIHEQSTDPQPWVRNAAKPFGSKMINGLQDGLFQMLGNQGKVEDDVLGKLLIEESRWLKLRDDIDVIGREVERLIVDDLVAEIVGI*