AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074510 MtrunA17_Chr1g0182111 95.153 949 46 0 1 949 1 949 0.0 1783
Msa0074510 MtrunA17_Chr5g0417861 71.875 256 44 6 694 949 10 237 6.09e-109 336
Msa0074510 MtrunA17_Chr7g0222591 33.626 342 173 10 642 949 311 632 2.42e-33 137
Msa0074510 MtrunA17_Chr7g0262631 29.617 574 279 21 39 548 69 581 3.15e-31 132
Msa0074510 MtrunA17_Chr1g0182831 26.908 498 255 21 73 510 1 449 4.96e-19 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074510 AT3G53540.1 36.746 928 476 29 62 947 61 919 5.50e-140 441
Msa0074510 AT3G53540.2 36.638 928 477 29 62 947 92 950 4.10e-139 440
Msa0074510 AT4G28760.2 30.977 481 235 16 56 486 82 515 9.07e-36 147
Msa0074510 AT4G28760.1 30.977 481 235 16 56 486 82 515 9.07e-36 147
Msa0074510 AT5G43880.3 27.027 518 232 22 62 534 66 482 5.64e-26 115
Msa0074510 AT5G43880.2 27.027 518 232 22 62 534 66 482 5.64e-26 115
Msa0074510 AT5G43880.4 27.027 518 232 22 62 534 66 482 5.64e-26 115
Msa0074510 AT5G43880.1 27.027 518 232 22 62 534 66 482 5.64e-26 115
Msa0074510 AT2G39435.4 34.050 279 159 9 691 949 190 463 1.13e-25 112
Msa0074510 AT2G39435.3 34.050 279 159 9 691 949 190 463 1.13e-25 112
Msa0074510 AT2G39435.1 34.050 279 159 9 691 949 190 463 1.13e-25 112
Msa0074510 AT2G39435.5 34.050 279 159 9 691 949 190 463 1.13e-25 112
Msa0074510 AT2G39435.6 34.050 279 159 9 691 949 190 463 1.13e-25 112
Msa0074510 AT2G39435.2 33.333 267 153 9 691 937 190 451 5.94e-22 100
Msa0074510 AT2G20240.1 25.618 445 219 14 57 468 12 377 8.90e-17 85.9

Find 256 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGTTCTCATTTAAATT+TGG 0.111515 1_2:+49145492 Msa0074510:intron
CTCTTCTCCTCTCCCGTTTA+AGG 0.163515 1_2:-49147021 None:intergenic
TCTTCCTCTCCTAGATTTAA+AGG 0.174348 1_2:+49146497 Msa0074510:CDS
TGTTGTCCTAAAACCTAATA+TGG 0.174399 1_2:+49146235 Msa0074510:CDS
TCAGCTAATAACTTCTTAAT+TGG 0.212274 1_2:-49145546 None:intergenic
CTAAGGGGCTCAAAGGTTTC+AGG 0.216196 1_2:-49147229 None:intergenic
CTGATAATAATTTGGAAGTT+TGG 0.219189 1_2:+49149494 Msa0074510:CDS
CCTGCTTCATCTACTGTCTT+TGG 0.228985 1_2:+49146935 Msa0074510:CDS
CTTCTCTTGGATTCAGTTGC+TGG 0.236414 1_2:-49145579 None:intergenic
TGCTCAAACTGATAATAATT+TGG 0.237442 1_2:+49149486 Msa0074510:CDS
AAGGGATCAGGAAGAATTTA+AGG 0.251312 1_2:+49145758 Msa0074510:CDS
TGTGGAGAGAGAAGCATTAA+TGG 0.262838 1_2:-49144231 None:intergenic
TTCATCTAAAGATGAATAAA+TGG 0.268462 1_2:+49149980 Msa0074510:three_prime_UTR
TGCAGTTCTCATTTAAATTT+GGG 0.277047 1_2:+49145493 Msa0074510:intron
GATAGTTCAAGCAGTGCTTC+TGG 0.278337 1_2:+49146533 Msa0074510:CDS
TCATCTTGTTCTGAATGTTT+TGG 0.281356 1_2:+49148276 Msa0074510:CDS
AGAAATGCAGCCAAACCTTT+TGG 0.297212 1_2:+49149682 Msa0074510:CDS
CATTAATGGAGAGACGTTAT+TGG 0.300458 1_2:-49144217 None:intergenic
GGAGAATAGTGAGGTAATAT+TGG 0.309554 1_2:-49144416 None:intergenic
TCGGCTCGTGTCTTAGTAAA+AGG 0.315444 1_2:+49147349 Msa0074510:CDS
TTAACCATATTCTTCTAGAT+TGG 0.322681 1_2:-49150098 None:intergenic
TCAGCACGCAAGAATGTTCT+AGG 0.325404 1_2:-49146962 None:intergenic
TCCTTGTGCTGCTTGTTATT+AGG 0.326961 1_2:-49145657 None:intergenic
GATTCCAATCTAGAAGAATA+TGG 0.328479 1_2:+49150094 Msa0074510:three_prime_UTR
ATTGATAGTAGATGATTTAG+TGG 0.328822 1_2:+49149861 Msa0074510:CDS
TATTGGACATCGAAATTATA+GGG 0.330122 1_2:-49144399 None:intergenic
TTCACCCAATCTTGAGGTTC+AGG 0.330620 1_2:+49147204 Msa0074510:CDS
ATGTTCAAAGTTCTCCATAT+TGG 0.331456 1_2:-49146078 None:intergenic
TCAGCATGATTTCCATGTTC+TGG 0.336312 1_2:-49146317 None:intergenic
CTCTCCCGTTTAAGGTCCTT+TGG 0.339239 1_2:-49147013 None:intergenic
TCTTCGGATAAGGTTCTTCC+TGG 0.346250 1_2:+49147322 Msa0074510:CDS
TTCTGAATCTTCTTCGGATA+AGG 0.357900 1_2:+49147312 Msa0074510:CDS
TACCAGTTTCCTTACCTTGT+AGG 0.359838 1_2:-49148314 None:intergenic
ACTTCGTAATGATCGATATA+TGG 0.362032 1_2:+49146988 Msa0074510:CDS
TACCTACCACTCTCTACCTT+TGG 0.370274 1_2:-49145804 None:intergenic
CTAGAGTATCCTTTAAATCT+AGG 0.370791 1_2:-49146506 None:intergenic
AAAGTTGCTGTTATTTCCTC+TGG 0.371025 1_2:-49146566 None:intergenic
TGTTAGAAGGAAATACATTA+TGG 0.371730 1_2:+49149398 Msa0074510:CDS
ATTCATTGAACAGAAGTTCA+TGG 0.372969 1_2:+49145866 Msa0074510:CDS
AGAGATGACATTGATGTAAT+AGG 0.373309 1_2:+49149823 Msa0074510:CDS
TTCCTTGGTTCCCTAGCATC+TGG 0.374335 1_2:-49149741 None:intergenic
ACAACAATCTTTGACGATCT+TGG 0.374861 1_2:-49146218 None:intergenic
TTGATACGTCGCTAGGCGTT+TGG 0.375451 1_2:-49145892 None:intergenic
TCATGTAGAACCAACCAATA+TGG 0.376303 1_2:+49146064 Msa0074510:CDS
TGTTTCTGTGTTTGAAGATC+TGG 0.379454 1_2:+49149540 Msa0074510:CDS
CGCTAGGCAGGCTGTCAAAA+CGG 0.380177 1_2:-49146784 None:intergenic
ATATTGGACATCGAAATTAT+AGG 0.383534 1_2:-49144400 None:intergenic
CATCATCCTCTACCTTTCCT+TGG 0.391677 1_2:-49149756 None:intergenic
GTGATTTGACTACTTGTTCA+AGG 0.392537 1_2:+49149575 Msa0074510:CDS
GCATTTCTCACCCATGGCTG+TGG 0.400191 1_2:-49149667 None:intergenic
GGTGAGAGAGTGAGGGAGAG+TGG 0.400592 1_2:-49144174 None:intergenic
GTGGAAATCTTCTAAACAAT+CGG 0.401053 1_2:+49145515 Msa0074510:CDS
GGGTGAATCTTCTTCAAGAT+TGG 0.403956 1_2:-49147188 None:intergenic
CAGATTCCAACTTCAGCAAC+TGG 0.404643 1_2:-49149309 None:intergenic
AACACCTGGGGATCTTCTCT+TGG 0.405633 1_2:-49145592 None:intergenic
AGAGGAAATAACAGCAACTT+TGG 0.406142 1_2:+49146568 Msa0074510:CDS
ATTTGGACAAATAGATTATG+AGG 0.408517 1_2:+49150017 Msa0074510:three_prime_UTR
ACCCCTTTCCAATCACATTC+CGG 0.411094 1_2:+49146041 Msa0074510:CDS
ATTTCAATTTGAGGTCAGAT+AGG 0.413621 1_2:+49146102 Msa0074510:CDS
AATTCTAGAAGCACAATATC+TGG 0.414534 1_2:+49147076 Msa0074510:CDS
ATATGGTTAAATCGTAAAAT+CGG 0.415637 1_2:+49150111 Msa0074510:three_prime_UTR
GAGGATGTGAATAAGTTTAG+TGG 0.416713 1_2:+49150036 Msa0074510:three_prime_UTR
GTGAGAGAGTGAGGGAGAGT+GGG 0.418467 1_2:-49144173 None:intergenic
TGGTGCCAAAGGACCTTAAA+CGG 0.420078 1_2:+49147008 Msa0074510:CDS
TGGGCCTTCTGAATCTTCTT+CGG 0.420630 1_2:+49147306 Msa0074510:CDS
GAGAGAGAGGTGAGAGAGTG+AGG 0.421508 1_2:-49144182 None:intergenic
AGGAGCCTGAACCTCAAGAT+TGG 0.421532 1_2:-49147209 None:intergenic
GAAGGATCAAGAACAGAGAT+TGG 0.424727 1_2:-49148237 None:intergenic
ACCTACCACTCTCTACCTTT+GGG 0.426395 1_2:-49145803 None:intergenic
AGCCAATGTGCTGCTCCTGC+TGG 0.428930 1_2:-49146723 None:intergenic
TTCTGAGTTGGTTGAACCAC+TGG 0.431879 1_2:+49146847 Msa0074510:CDS
GCTAGGCAGGCTGTCAAAAC+GGG 0.434829 1_2:-49146783 None:intergenic
TAGGAGGAGCTCAAGGGATC+AGG 0.437081 1_2:+49145746 Msa0074510:CDS
AGATAGAGTAGAAACTAGAA+AGG 0.441978 1_2:-49144284 None:intergenic
AGAATTTAAGGATGTATTTG+AGG 0.444098 1_2:+49145770 Msa0074510:CDS
ATAGTTCAAGCAGTGCTTCT+GGG 0.448499 1_2:+49146534 Msa0074510:CDS
GACGTATCAGCTGGTTCTAC+TGG 0.450301 1_2:+49148138 Msa0074510:CDS
GTATCTTCTGAAATGTTAGA+AGG 0.450334 1_2:+49149385 Msa0074510:CDS
TTGAACATGATTTCAATTTG+AGG 0.450676 1_2:+49146093 Msa0074510:CDS
CAACAGGGGTGAATTACAAC+AGG 0.452060 1_2:+49146129 Msa0074510:CDS
GTATTCATCTTCAGATTTGA+AGG 0.452350 1_2:+49145824 Msa0074510:CDS
TATGGAGAACTGAAGATAGC+TGG 0.453058 1_2:+49149416 Msa0074510:CDS
CTACATGACCGGAATGTGAT+TGG 0.453884 1_2:-49146049 None:intergenic
ACCTTGAGGAAGATGAAGCT+TGG 0.454666 1_2:-49144562 None:intergenic
TTGGCTGCATTTCTCACCCA+TGG 0.454936 1_2:-49149673 None:intergenic
AGGTCAGATAGGGAGTCAAC+AGG 0.455232 1_2:+49146113 Msa0074510:CDS
GTCTGTGCATTCACTGAAGC+AGG 0.455725 1_2:+49147114 Msa0074510:CDS
CAGCATGGAGATTCATGTCC+AGG 0.460685 1_2:-49148192 None:intergenic
CTATGTCTATTTAAGTCAAA+CGG 0.461553 1_2:-49146596 None:intergenic
ACCCTAAGAGGAGGAGGAGG+AGG 0.462231 1_2:-49144446 None:intergenic
CTCTCTGAAGCACCTGTACC+TGG 0.463051 1_2:+49148174 Msa0074510:CDS
TCTCCTGATTCTAGTTTCTC+CGG 0.466591 1_2:+49145263 Msa0074510:CDS
AAAGGTAGAGGATGATGTCC+TGG 0.466697 1_2:+49149762 Msa0074510:CDS
CCGGGAGAATAGTTGTCCTT+AGG 0.466746 1_2:+49149917 Msa0074510:three_prime_UTR
GACCGGAATGTGATTGGAAA+GGG 0.468052 1_2:-49146043 None:intergenic
CTAAAAGACCTTGCACTGTC+AGG 0.468134 1_2:-49146392 None:intergenic
TGTTTGAAGATCTGGAAGAT+AGG 0.481147 1_2:+49149548 Msa0074510:CDS
GACAGCCTGCCTAGCGGGGA+AGG 0.481337 1_2:+49146791 Msa0074510:CDS
TATCAAATGAAAACACTGTT+GGG 0.482329 1_2:+49147287 Msa0074510:CDS
GAGGAAATAACAGCAACTTT+GGG 0.485008 1_2:+49146569 Msa0074510:CDS
AGGGTGTGTAGTAGTAGTAG+TGG 0.486332 1_2:-49144264 None:intergenic
GCAACTCCAGTTGCTGAAGT+TGG 0.486560 1_2:+49149303 Msa0074510:CDS
TCATAAACAGCAACAACATC+CGG 0.487223 1_2:+49145235 Msa0074510:CDS
GTACCCTTCATTCTCTTACC+AGG 0.488941 1_2:-49146761 None:intergenic
AGGTGTTATAGCTAGATTGA+TGG 0.492264 1_2:+49145608 Msa0074510:CDS
CAACGGCGAACCTTCTGAGT+TGG 0.495337 1_2:+49146835 Msa0074510:CDS
TGAAACCTTCCCCGCTAGGC+AGG 0.495785 1_2:-49146796 None:intergenic
CCTAGTGATGTAAATCAAGT+AGG 0.498130 1_2:+49149946 Msa0074510:three_prime_UTR
CCTACTTGATTTACATCACT+AGG 0.499698 1_2:-49149946 None:intergenic
CTAGAATCAGGAGAGAAATC+CGG 0.500407 1_2:-49145254 None:intergenic
CCACCGGAGAAACTAGAATC+AGG 0.500712 1_2:-49145266 None:intergenic
CCTAAGGACAACTATTCTCC+CGG 0.501684 1_2:-49149917 None:intergenic
GATCGTCTAGGAGGAGCTCA+AGG 0.502385 1_2:+49145739 Msa0074510:CDS
GACAGATCATCTGTAAAAGA+AGG 0.502791 1_2:-49148255 None:intergenic
TGAGAGAGTGAGGGAGAGTG+GGG 0.506048 1_2:-49144172 None:intergenic
GAAGAGTGGGTGTGAGAGAG+AGG 0.508198 1_2:-49144195 None:intergenic
ATTGGTTGGTTCTACATGAC+CGG 0.509610 1_2:-49146060 None:intergenic
AAGAGGTGCAAGGCACCAGC+AGG 0.509861 1_2:+49146708 Msa0074510:CDS
CGAAGAAAATTCAATGCAAG+AGG 0.512210 1_2:+49147390 Msa0074510:CDS
GATAGAGTAGAAACTAGAAA+GGG 0.514075 1_2:-49144283 None:intergenic
AAGACACGAGCCGATGATCC+AGG 0.514598 1_2:-49147340 None:intergenic
AAGCATCGCGATGGTTATCA+TGG 0.515516 1_2:+49146161 Msa0074510:CDS
TTTCTCTGCAACCTTGCCAC+CGG 0.516407 1_2:-49145282 None:intergenic
GGAGCCTGAACCTCAAGATT+GGG 0.516857 1_2:-49147208 None:intergenic
TTCTAGTTTCTCCGGTGGCA+AGG 0.517530 1_2:+49145271 Msa0074510:CDS
ATTATCAGAGAGGTGGAAGA+TGG 0.517782 1_2:+49146673 Msa0074510:CDS
ATATTTCAGGACGTATCAGC+TGG 0.518195 1_2:+49148129 Msa0074510:intron
GCTAGATTGATGGGTCTTGA+CGG 0.518416 1_2:+49145618 Msa0074510:CDS
TCATTGAAACCTTCCCCGCT+AGG 0.518789 1_2:-49146800 None:intergenic
GCTGATATGCTAGCGTTCCC+TGG 0.518873 1_2:+49146743 Msa0074510:CDS
GTATCAAATGAAAACACTGT+TGG 0.522003 1_2:+49147286 Msa0074510:CDS
CTGGGTATCAGCAGCAAGGA+TGG 0.522721 1_2:+49146866 Msa0074510:CDS
CTACTTGTTCAAGGTCTGAA+AGG 0.522940 1_2:+49149584 Msa0074510:CDS
CCAACGCCTCAAGTGTATCA+TGG 0.523411 1_2:-49145938 None:intergenic
GTTGTCCTAAAACCTAATAT+GGG 0.523452 1_2:+49146236 Msa0074510:CDS
CCATGATACACTTGAGGCGT+TGG 0.524158 1_2:+49145938 Msa0074510:CDS
CATTTCTCACCCATGGCTGT+GGG 0.524711 1_2:-49149666 None:intergenic
ATCAATCTAGCTATAACACC+TGG 0.525093 1_2:-49145606 None:intergenic
AAAACCCTAAGAGGAGGAGG+AGG 0.525347 1_2:-49144449 None:intergenic
GGTGCCAAAGGACCTTAAAC+GGG 0.527205 1_2:+49147009 Msa0074510:CDS
GAGAGACGTTATTGGAAGAG+TGG 0.531902 1_2:-49144209 None:intergenic
GGAGATTCATGTCCAGGTAC+AGG 0.532375 1_2:-49148186 None:intergenic
TGGAAATCTTCTAAACAATC+GGG 0.532665 1_2:+49145516 Msa0074510:CDS
TTTATCTCTAAGGGGCTCAA+AGG 0.532888 1_2:-49147236 None:intergenic
TTTCAATTTGAGGTCAGATA+GGG 0.533938 1_2:+49146103 Msa0074510:CDS
TATCTGGTCACAAGAAGTCT+TGG 0.534254 1_2:+49147092 Msa0074510:CDS
ATCTACTGACCCACAGCCAT+GGG 0.534736 1_2:+49149657 Msa0074510:CDS
CAAGGTTGCAGAGAAAGATT+CGG 0.535082 1_2:+49145289 Msa0074510:CDS
CCAAAGACAGTAGATGAAGC+AGG 0.535618 1_2:-49146935 None:intergenic
GGTGTTATAGCTAGATTGAT+GGG 0.536964 1_2:+49145609 Msa0074510:CDS
CTAAGGACAACTATTCTCCC+GGG 0.537637 1_2:-49149916 None:intergenic
TTCTGCTAAAATACTTCAAG+CGG 0.538802 1_2:+49145976 Msa0074510:CDS
ATGATTAACGGGCTTCAAGA+TGG 0.541073 1_2:+49149712 Msa0074510:CDS
TACCCTTCATTCTCTTACCA+GGG 0.542493 1_2:-49146760 None:intergenic
TAAGGTTCTTCCTGGATCAT+CGG 0.545547 1_2:+49147330 Msa0074510:CDS
TCAAAGTTCTCCATATTGGT+TGG 0.546294 1_2:-49146074 None:intergenic
GGTCAGATAGGGAGTCAACA+GGG 0.546327 1_2:+49146114 Msa0074510:CDS
TCTTTCATGATTCCTCGCCA+TGG 0.548510 1_2:+49144512 Msa0074510:exon
GGGTGTGTAGTAGTAGTAGT+GGG 0.549612 1_2:-49144263 None:intergenic
AGAAAATTATGCGGAGAACA+AGG 0.550019 1_2:-49146293 None:intergenic
CACCAGCAGGAGCAGCACAT+TGG 0.551873 1_2:+49146721 Msa0074510:CDS
AGAGAGAGGTGAGAGAGTGA+GGG 0.552509 1_2:-49144181 None:intergenic
CTAGTGATGTAAATCAAGTA+GGG 0.553151 1_2:+49149947 Msa0074510:three_prime_UTR
CCTCAATCAGCAACTTGCCC+AGG 0.553535 1_2:-49149780 None:intergenic
TAAATTTGCCTGACAGTGCA+AGG 0.555917 1_2:+49146384 Msa0074510:CDS
CCTGGGCAAGTTGCTGATTG+AGG 0.558438 1_2:+49149780 Msa0074510:CDS
AGCAGAGGAACGGCAAATGA+CGG 0.558914 1_2:+49145714 Msa0074510:CDS
ATGGAGAACTGAAGATAGCT+GGG 0.559618 1_2:+49149417 Msa0074510:CDS
TCATCTTCAGATTTGAAGGA+CGG 0.560308 1_2:+49145828 Msa0074510:CDS
AGTAGTGGGTAAGAATAATG+TGG 0.560776 1_2:-49144249 None:intergenic
GTATCAGCAGCAAGGATGGT+TGG 0.563267 1_2:+49146870 Msa0074510:CDS
TTGTTATTAGGCTGCTGAGA+TGG 0.565145 1_2:-49145645 None:intergenic
AGAGACGTTATTGGAAGAGT+GGG 0.565909 1_2:-49144208 None:intergenic
AATGATAAGTTTGCTCGCAA+CGG 0.566185 1_2:+49146818 Msa0074510:CDS
GTTCCCTGGTAAGAGAATGA+AGG 0.568397 1_2:+49146757 Msa0074510:CDS
TCCAAGCTTCATCTTCCTCA+AGG 0.569914 1_2:+49144561 Msa0074510:CDS
CTAACCATGGTAAATCAGCT+TGG 0.570394 1_2:+49150072 Msa0074510:three_prime_UTR
AGAAGAGATTATCAGAGAGG+TGG 0.574106 1_2:+49146666 Msa0074510:CDS
AATCTACTGACCCACAGCCA+TGG 0.575881 1_2:+49149656 Msa0074510:CDS
AGTTGCTGATTGAGGAGTCT+CGG 0.577954 1_2:+49149788 Msa0074510:CDS
GGAGGAGGAGGAGAATAGTG+AGG 0.578970 1_2:-49144425 None:intergenic
ATCAAGAACAGAGATTGGAC+TGG 0.580851 1_2:-49148232 None:intergenic
GCCTAATAACAAGCAGCACA+AGG 0.581754 1_2:+49145656 Msa0074510:CDS
AGTTCTCATTTAAATTTGGG+TGG 0.584733 1_2:+49145496 Msa0074510:intron
TCTGAGTTGGTTGAACCACT+GGG 0.584863 1_2:+49146848 Msa0074510:CDS
CAAAGGACCTTAAACGGGAG+AGG 0.584910 1_2:+49147014 Msa0074510:CDS
AGAAGATTCACCCAATCTTG+AGG 0.585560 1_2:+49147198 Msa0074510:CDS
GTATCAGCTGGTTCTACTGG+TGG 0.588755 1_2:+49148141 Msa0074510:CDS
TCCCAAAGGTAGAGAGTGGT+AGG 0.589898 1_2:+49145802 Msa0074510:CDS
TTCCCTGGTAAGAGAATGAA+GGG 0.592385 1_2:+49146758 Msa0074510:CDS
TGACCGGAATGTGATTGGAA+AGG 0.595190 1_2:-49146044 None:intergenic
TCAAGAACAGAGATTGGACT+GGG 0.595338 1_2:-49148231 None:intergenic
CTAGTTTCAAGTGACGAAGA+TGG 0.596738 1_2:+49149355 Msa0074510:CDS
TGATCGATATATGGTGCCAA+AGG 0.596759 1_2:+49146997 Msa0074510:CDS
AGGGAACCAAGGAAAGGTAG+AGG 0.597684 1_2:+49149750 Msa0074510:CDS
TTCCAGATGCTAGGGAACCA+AGG 0.597921 1_2:+49149739 Msa0074510:CDS
CAAATGACGGCCGATCGTCT+AGG 0.598475 1_2:+49145727 Msa0074510:CDS
TGATCAGCATCTTTACAGCA+TGG 0.598824 1_2:-49148207 None:intergenic
TCAGCAGCAAGGATGGTTGG+AGG 0.599245 1_2:+49146873 Msa0074510:CDS
GATTTAGTGGCAGAAATAGT+CGG 0.599671 1_2:+49149874 Msa0074510:CDS
CAAAGAAGAGATTATCAGAG+AGG 0.605669 1_2:+49146663 Msa0074510:CDS
TTCAAGTGACGAAGATGGCG+TGG 0.605966 1_2:+49149360 Msa0074510:CDS
CATCACTAGGAAACATCCTA+AGG 0.606274 1_2:-49149933 None:intergenic
GAATCCAAGAGAAGATCCCC+AGG 0.606684 1_2:+49145588 Msa0074510:CDS
GAATCCAAGCTGATTTACCA+TGG 0.607098 1_2:-49150076 None:intergenic
GAAAATCTTGATACGTCGCT+AGG 0.608770 1_2:-49145899 None:intergenic
TCAATCTAGCTATAACACCT+GGG 0.609545 1_2:-49145605 None:intergenic
CAGCAGCAAGGATGGTTGGA+GGG 0.612392 1_2:+49146874 Msa0074510:CDS
CATGTATTAGTAGTTTGTCA+AGG 0.613209 1_2:+49146900 Msa0074510:CDS
TCAAACACAGAAACACTCAC+AGG 0.614246 1_2:-49149532 None:intergenic
AAGGTAGAGGATGATGTCCT+GGG 0.615193 1_2:+49149763 Msa0074510:CDS
AGTGTCAGTGCTGACCTACA+AGG 0.615243 1_2:+49148300 Msa0074510:CDS
CTAGCATAGGTCCCTCCACA+TGG 0.618293 1_2:-49149336 None:intergenic
TGAATCATCTGTGAGTAGAG+AGG 0.619779 1_2:+49146640 Msa0074510:CDS
TCGTCACTTGAAACTAGCAT+AGG 0.622726 1_2:-49149349 None:intergenic
TTGAGCTCCTCCTAGACGAT+CGG 0.626010 1_2:-49145737 None:intergenic
AAATTGCAAAGGAAGTAACT+AGG 0.628658 1_2:+49146438 Msa0074510:CDS
GAGATCCCAAAGGTAGAGAG+TGG 0.629561 1_2:+49145798 Msa0074510:CDS
TGACAATTCCTGAATTGATG+CGG 0.632177 1_2:-49149621 None:intergenic
CCTGATTCTAGTTTCTCCGG+TGG 0.633485 1_2:+49145266 Msa0074510:CDS
GGAATCTAGAGAAATTGCAA+AGG 0.633666 1_2:+49146427 Msa0074510:CDS
TGAGGCGTTGGACTCTAACA+AGG 0.635888 1_2:+49145950 Msa0074510:CDS
TTTCATCAGAAGCATCGCGA+TGG 0.636867 1_2:+49146152 Msa0074510:CDS
AAATCTTCTAAACAATCGGG+TGG 0.637998 1_2:+49145519 Msa0074510:CDS
AGAAATGACGCAGATCGAGA+AGG 0.640879 1_2:-49144486 None:intergenic
TAAGGACAACTATTCTCCCG+GGG 0.642645 1_2:-49149915 None:intergenic
GATGAAGCTTGGAGTTGTTG+CGG 0.643612 1_2:-49144551 None:intergenic
GATGCTAGGGAACCAAGGAA+AGG 0.644912 1_2:+49149744 Msa0074510:CDS
GTATCCTTTAAATCTAGGAG+AGG 0.646624 1_2:-49146501 None:intergenic
GGAATCTGAAGACCATGTGG+AGG 0.646710 1_2:+49149324 Msa0074510:CDS
AGTGGTTCAACCAACTCAGA+AGG 0.647689 1_2:-49146845 None:intergenic
ATGACGGCCGATCGTCTAGG+AGG 0.649553 1_2:+49145730 Msa0074510:CDS
ATCGTCTAGGAGGAGCTCAA+GGG 0.651662 1_2:+49145740 Msa0074510:CDS
ACCACTGGGTATCAGCAGCA+AGG 0.651868 1_2:+49146862 Msa0074510:CDS
GATGGCACACAAGTCTCAAG+AGG 0.654613 1_2:+49146691 Msa0074510:CDS
CACAAGTCTCAAGAGGTGCA+AGG 0.655382 1_2:+49146698 Msa0074510:CDS
TCCTTGCTGCTGATACCCAG+TGG 0.657434 1_2:-49146863 None:intergenic
TTCTGGGAATGAATCTCCAG+AGG 0.661179 1_2:+49146550 Msa0074510:CDS
CAAACACAGAAACACTCACA+GGG 0.661315 1_2:-49149531 None:intergenic
GAATCTGAAGACCATGTGGA+GGG 0.661775 1_2:+49149325 Msa0074510:CDS
ACCGGAATGTGATTGGAAAG+GGG 0.664557 1_2:-49146042 None:intergenic
GTCAGATAGGGAGTCAACAG+GGG 0.667063 1_2:+49146115 Msa0074510:CDS
AAGAGTCTTGATCATAGACA+TGG 0.675010 1_2:+49147049 Msa0074510:CDS
ACTTAAATAGACATAGCAGA+CGG 0.675436 1_2:+49146603 Msa0074510:CDS
CAATCTAGCTATAACACCTG+GGG 0.676866 1_2:-49145604 None:intergenic
CAGGTACAGGTGCTTCAGAG+AGG 0.687176 1_2:-49148173 None:intergenic
TTATCCGAAGAAGATTCAGA+AGG 0.687645 1_2:-49147310 None:intergenic
TGCTGATTGAGGAGTCTCGG+TGG 0.702994 1_2:+49149791 Msa0074510:CDS
GTTGGAATCTGAAGACCATG+TGG 0.720815 1_2:+49149321 Msa0074510:CDS
AATATGGGAAAATTTCAGAG+TGG 0.723259 1_2:+49146251 Msa0074510:CDS
TGTTCTGGCAGAAAATTATG+CGG 0.723663 1_2:-49146302 None:intergenic
TGAGGTCTCAGAGATCCCAA+AGG 0.724251 1_2:+49145788 Msa0074510:CDS
AGAGTTCCATGATACACTTG+AGG 0.730462 1_2:+49145932 Msa0074510:CDS
AAGGACAACTATTCTCCCGG+GGG 0.774055 1_2:-49149914 None:intergenic
AAATTGAAGAGAGCTAACCA+TGG 0.776077 1_2:+49150059 Msa0074510:three_prime_UTR
ACAGATGATTCACTAGAACG+CGG 0.780245 1_2:-49146629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATTTGATTTCATTA+AGG + chr1_2:49144789-49144808 Msa0074510:intron 10.0%
!! TAAAAATAACAAAAATAACA+CGG - chr1_2:49145424-49145443 None:intergenic 10.0%
!! AAAATTTATGAGAAATTATT+TGG - chr1_2:49147564-49147583 None:intergenic 10.0%
!! ATTAAGAAATGTATAAATAA+GGG - chr1_2:49147715-49147734 None:intergenic 10.0%
!! TATTAAGAAATGTATAAATA+AGG - chr1_2:49147716-49147735 None:intergenic 10.0%
!! AAAAAAAGCAGAAAAAAATT+TGG - chr1_2:49144920-49144939 None:intergenic 15.0%
!! ATAAACATATCAAAATAACA+TGG - chr1_2:49147428-49147447 None:intergenic 15.0%
!! AAAAAATAATCAAAATCTCA+AGG - chr1_2:49147846-49147865 None:intergenic 15.0%
!! AATATTAATAGCAACAAAAT+GGG - chr1_2:49147934-49147953 None:intergenic 15.0%
!! AAATATTAATAGCAACAAAA+TGG - chr1_2:49147935-49147954 None:intergenic 15.0%
!! ATGGTTAAATAATAAATTTG+TGG - chr1_2:49148743-49148762 None:intergenic 15.0%
!!! TGGATAATAATATTTTCATT+TGG + chr1_2:49150000-49150019 Msa0074510:three_prime_UTR 15.0%
!! GAAAAAGAAAAAGAAAATGT+AGG - chr1_2:49144329-49144348 None:intergenic 20.0%
!!! TTGTTGTTTAATTCATTTTC+AGG + chr1_2:49145200-49145219 Msa0074510:intron 20.0%
!!! TGTTGTTTAATTCATTTTCA+GGG + chr1_2:49145201-49145220 Msa0074510:intron 20.0%
!! ATAGCTAGAATTTATGAATA+AGG + chr1_2:49145356-49145375 Msa0074510:intron 20.0%
!!! ATTTTGAACTTCATTTAAGT+CGG - chr1_2:49147158-49147177 None:intergenic 20.0%
!! TGAGAAATTATTTGGTTAAT+TGG - chr1_2:49147556-49147575 None:intergenic 20.0%
!! ATGTAAAGTTTCAAAAACAT+TGG + chr1_2:49147873-49147892 Msa0074510:intron 20.0%
!! AAAATGTATGATTAAGTCTA+AGG - chr1_2:49147982-49148001 None:intergenic 20.0%
!! AATATTTCAAAGTTCTGTTA+AGG + chr1_2:49148075-49148094 Msa0074510:intron 20.0%
!! ATATTTCAAAGTTCTGTTAA+GGG + chr1_2:49148076-49148095 Msa0074510:intron 20.0%
!! TGATATTGTTGTAATATTTC+AGG + chr1_2:49148116-49148135 Msa0074510:intron 20.0%
!! CAATTATGAATCCAAATATA+AGG - chr1_2:49148385-49148404 None:intergenic 20.0%
!! GTAATATTAAACCCTATTTA+TGG + chr1_2:49148487-49148506 Msa0074510:intron 20.0%
!!! TTTTATTATTGTCAAGAATG+TGG - chr1_2:49148615-49148634 None:intergenic 20.0%
!! TAAAATTACTTCAATTTGCA+TGG + chr1_2:49148630-49148649 Msa0074510:intron 20.0%
!! TTTATTATTTAACCATAGCA+AGG + chr1_2:49148747-49148766 Msa0074510:intron 20.0%
!! TTATTATTTAACCATAGCAA+GGG + chr1_2:49148748-49148767 Msa0074510:intron 20.0%
!!! TATTGAATGAATCTAAAACA+TGG - chr1_2:49148893-49148912 None:intergenic 20.0%
!!! TTAATCATTTTTGATCCAAA+AGG - chr1_2:49149700-49149719 None:intergenic 20.0%
!! TTTGGATCAAAAATGATTAA+CGG + chr1_2:49149700-49149719 Msa0074510:CDS 20.0%
!! TTCATCTAAAGATGAATAAA+TGG + chr1_2:49149980-49149999 Msa0074510:three_prime_UTR 20.0%
! TATTGGACATCGAAATTATA+GGG - chr1_2:49144402-49144421 None:intergenic 25.0%
! ATATTGGACATCGAAATTAT+AGG - chr1_2:49144403-49144422 None:intergenic 25.0%
!!! GCTTTTTTTTAACTTTTCTG+CGG + chr1_2:49144931-49144950 Msa0074510:intron 25.0%
! AAATTACTAGAATCAATGCA+AGG - chr1_2:49145112-49145131 None:intergenic 25.0%
! TTCATAACCAAAAGTGAAAA+GGG - chr1_2:49145328-49145347 None:intergenic 25.0%
! ATTCATAACCAAAAGTGAAA+AGG - chr1_2:49145329-49145348 None:intergenic 25.0%
! TTGCAGTTCTCATTTAAATT+TGG + chr1_2:49145492-49145511 Msa0074510:intron 25.0%
! TGCAGTTCTCATTTAAATTT+GGG + chr1_2:49145493-49145512 Msa0074510:intron 25.0%
! TCAGCTAATAACTTCTTAAT+TGG - chr1_2:49145549-49145568 None:intergenic 25.0%
! AGAATTTAAGGATGTATTTG+AGG + chr1_2:49145770-49145789 Msa0074510:CDS 25.0%
! TTGAACATGATTTCAATTTG+AGG + chr1_2:49146093-49146112 Msa0074510:CDS 25.0%
!! ATTTTCCCATATTAGGTTTT+AGG - chr1_2:49146244-49146263 None:intergenic 25.0%
! CTATGTCTATTTAAGTCAAA+CGG - chr1_2:49146599-49146618 None:intergenic 25.0%
!! TTTTGAACTTCATTTAAGTC+GGG - chr1_2:49147157-49147176 None:intergenic 25.0%
!! AACAACACTTTTATCTCTAA+GGG - chr1_2:49147248-49147267 None:intergenic 25.0%
!! AAACAACACTTTTATCTCTA+AGG - chr1_2:49147249-49147268 None:intergenic 25.0%
! TATCAAATGAAAACACTGTT+GGG + chr1_2:49147287-49147306 Msa0074510:CDS 25.0%
! CAGATAAAAGAACTAAGAAT+AGG - chr1_2:49147805-49147824 None:intergenic 25.0%
!! ATTTTGCACAATTGTTTAGA+TGG + chr1_2:49147951-49147970 Msa0074510:intron 25.0%
! AGAGATGATTAAGTAACTAA+AGG - chr1_2:49148411-49148430 None:intergenic 25.0%
! ATATAGGATGTCCATAAATA+GGG - chr1_2:49148501-49148520 None:intergenic 25.0%
! TATATAGGATGTCCATAAAT+AGG - chr1_2:49148502-49148521 None:intergenic 25.0%
! ATCCTATATATGAAGGTTAA+AGG + chr1_2:49148512-49148531 Msa0074510:intron 25.0%
! AACCTTTAACCTTCATATAT+AGG - chr1_2:49148517-49148536 None:intergenic 25.0%
!!! TACAGTTTTTTGATCATAGA+CGG + chr1_2:49148537-49148556 Msa0074510:intron 25.0%
!!! AGATTGATGACGTAATTATT+AGG - chr1_2:49148812-49148831 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr1_2:49148978-49148997 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_2:49148904-49148923 Msa0074510:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr1_2:49148978-49148997 Msa0074510:intron 25.0%
! AATAACAGTTCATTACAACA+AGG - chr1_2:49149265-49149284 None:intergenic 25.0%
! AATGAACTGTTATTGTTGAT+AGG + chr1_2:49149271-49149290 Msa0074510:intron 25.0%
! ATGAACTGTTATTGTTGATA+GGG + chr1_2:49149272-49149291 Msa0074510:intron 25.0%
! TGTTAGAAGGAAATACATTA+TGG + chr1_2:49149398-49149417 Msa0074510:CDS 25.0%
! TGCTCAAACTGATAATAATT+TGG + chr1_2:49149486-49149505 Msa0074510:CDS 25.0%
! CTGATAATAATTTGGAAGTT+TGG + chr1_2:49149494-49149513 Msa0074510:CDS 25.0%
! TTGGATCAAAAATGATTAAC+GGG + chr1_2:49149701-49149720 Msa0074510:CDS 25.0%
!! ATTGATAGTAGATGATTTAG+TGG + chr1_2:49149861-49149880 Msa0074510:CDS 25.0%
! ATTTGGACAAATAGATTATG+AGG + chr1_2:49150017-49150036 Msa0074510:three_prime_UTR 25.0%
! TTAACCATATTCTTCTAGAT+TGG - chr1_2:49150101-49150120 None:intergenic 25.0%
GATAGAGTAGAAACTAGAAA+GGG - chr1_2:49144286-49144305 None:intergenic 30.0%
AGATAGAGTAGAAACTAGAA+AGG - chr1_2:49144287-49144306 None:intergenic 30.0%
GAAATTATAGGGAAAAAGTG+TGG - chr1_2:49144391-49144410 None:intergenic 30.0%
!! GTGAGATTTAATTTTGTCCA+TGG - chr1_2:49144532-49144551 None:intergenic 30.0%
!!! TTTTTTTAACTTTTCTGCGG+TGG + chr1_2:49144934-49144953 Msa0074510:intron 30.0%
!!! GTTTTTTCCCTTTTCACTTT+TGG + chr1_2:49145318-49145337 Msa0074510:intron 30.0%
AGTTCTCATTTAAATTTGGG+TGG + chr1_2:49145496-49145515 Msa0074510:intron 30.0%
GTGGAAATCTTCTAAACAAT+CGG + chr1_2:49145515-49145534 Msa0074510:CDS 30.0%
TGGAAATCTTCTAAACAATC+GGG + chr1_2:49145516-49145535 Msa0074510:CDS 30.0%
GTATTCATCTTCAGATTTGA+AGG + chr1_2:49145824-49145843 Msa0074510:CDS 30.0%
ATTCATTGAACAGAAGTTCA+TGG + chr1_2:49145866-49145885 Msa0074510:CDS 30.0%
TTCTGCTAAAATACTTCAAG+CGG + chr1_2:49145976-49145995 Msa0074510:CDS 30.0%
!! TGCTTTTTAAACAAAGAGTC+TGG - chr1_2:49146002-49146021 None:intergenic 30.0%
ATGTTCAAAGTTCTCCATAT+TGG - chr1_2:49146081-49146100 None:intergenic 30.0%
! ATTTCAATTTGAGGTCAGAT+AGG + chr1_2:49146102-49146121 Msa0074510:CDS 30.0%
! TTTCAATTTGAGGTCAGATA+GGG + chr1_2:49146103-49146122 Msa0074510:CDS 30.0%
TGTTGTCCTAAAACCTAATA+TGG + chr1_2:49146235-49146254 Msa0074510:CDS 30.0%
GTTGTCCTAAAACCTAATAT+GGG + chr1_2:49146236-49146255 Msa0074510:CDS 30.0%
!!! CTCTGAAATTTTCCCATATT+AGG - chr1_2:49146251-49146270 None:intergenic 30.0%
AATATGGGAAAATTTCAGAG+TGG + chr1_2:49146251-49146270 Msa0074510:CDS 30.0%
AAATTGCAAAGGAAGTAACT+AGG + chr1_2:49146438-49146457 Msa0074510:CDS 30.0%
ATGAAAAACAATCTGAGCAA+TGG + chr1_2:49146464-49146483 Msa0074510:CDS 30.0%
! CTAGAGTATCCTTTAAATCT+AGG - chr1_2:49146509-49146528 None:intergenic 30.0%
ACTTAAATAGACATAGCAGA+CGG + chr1_2:49146603-49146622 Msa0074510:CDS 30.0%
! CATGTATTAGTAGTTTGTCA+AGG + chr1_2:49146900-49146919 Msa0074510:CDS 30.0%
ACTTCGTAATGATCGATATA+TGG + chr1_2:49146988-49147007 Msa0074510:CDS 30.0%
! AATTCTAGAAGCACAATATC+TGG + chr1_2:49147076-49147095 Msa0074510:CDS 30.0%
! ACAACACTTTTATCTCTAAG+GGG - chr1_2:49147247-49147266 None:intergenic 30.0%
GTATCAAATGAAAACACTGT+TGG + chr1_2:49147286-49147305 Msa0074510:CDS 30.0%
AAAATTCAATGCAAGAGGTT+AGG + chr1_2:49147395-49147414 Msa0074510:intron 30.0%
! TAATTGGCTTATGTGATATG+AGG - chr1_2:49147540-49147559 None:intergenic 30.0%
AAATTGCCAAATCTATCATC+TGG + chr1_2:49147633-49147652 Msa0074510:intron 30.0%
GTGTTGAACTCAATATCTAA+TGG + chr1_2:49147655-49147674 Msa0074510:intron 30.0%
! CTTTTATCTGATCATCATAC+AGG + chr1_2:49147815-49147834 Msa0074510:intron 30.0%
! ACATTTTGTGAAGTTATCAG+AGG + chr1_2:49147995-49148014 Msa0074510:intron 30.0%
TTCTCAACGATCAATTATTC+TGG + chr1_2:49148030-49148049 Msa0074510:intron 30.0%
!! TCATCTTGTTCTGAATGTTT+TGG + chr1_2:49148276-49148295 Msa0074510:CDS 30.0%
ATGAATCCAAATATAAGGTG+AGG - chr1_2:49148380-49148399 None:intergenic 30.0%
TATGGACATCCTATATATGA+AGG + chr1_2:49148505-49148524 Msa0074510:intron 30.0%
ATGGTATGTAATGTAGAAAG+TGG + chr1_2:49148658-49148677 Msa0074510:intron 30.0%
TGTATATACTAAGACCTCAA+AGG - chr1_2:49148842-49148861 None:intergenic 30.0%
TGTTTCGTTTAACAGTTGAT+TGG + chr1_2:49149183-49149202 Msa0074510:intron 30.0%
!!! TGATGTTTGTGCCTTTTTTT+TGG + chr1_2:49149236-49149255 Msa0074510:intron 30.0%
CAACAAGGAAACCAAAAAAA+AGG - chr1_2:49149250-49149269 None:intergenic 30.0%
!! GTATCTTCTGAAATGTTAGA+AGG + chr1_2:49149385-49149404 Msa0074510:CDS 30.0%
! CATTTTTGATCCAAAAGGTT+TGG - chr1_2:49149695-49149714 None:intergenic 30.0%
AGAGATGACATTGATGTAAT+AGG + chr1_2:49149823-49149842 Msa0074510:CDS 30.0%
CTAGTGATGTAAATCAAGTA+GGG + chr1_2:49149947-49149966 Msa0074510:three_prime_UTR 30.0%
GATTCCAATCTAGAAGAATA+TGG + chr1_2:49150094-49150113 Msa0074510:three_prime_UTR 30.0%
CATTAATGGAGAGACGTTAT+TGG - chr1_2:49144220-49144239 None:intergenic 35.0%
!! AGTAGTGGGTAAGAATAATG+TGG - chr1_2:49144252-49144271 None:intergenic 35.0%
GGAGAATAGTGAGGTAATAT+TGG - chr1_2:49144419-49144438 None:intergenic 35.0%
!! ATTTAATTTTGTCCATGGCG+AGG - chr1_2:49144527-49144546 None:intergenic 35.0%
TTGAGAATTGAAGCTGAAAC+TGG - chr1_2:49144622-49144641 None:intergenic 35.0%
TCATAAACAGCAACAACATC+CGG + chr1_2:49145235-49145254 Msa0074510:CDS 35.0%
AAATCTTCTAAACAATCGGG+TGG + chr1_2:49145519-49145538 Msa0074510:CDS 35.0%
TCAATCTAGCTATAACACCT+GGG - chr1_2:49145608-49145627 None:intergenic 35.0%
ATCAATCTAGCTATAACACC+TGG - chr1_2:49145609-49145628 None:intergenic 35.0%
! AGGTGTTATAGCTAGATTGA+TGG + chr1_2:49145608-49145627 Msa0074510:CDS 35.0%
! GGTGTTATAGCTAGATTGAT+GGG + chr1_2:49145609-49145628 Msa0074510:CDS 35.0%
! CTGCTTCGATTTTTCTCTAA+AGG - chr1_2:49145699-49145718 None:intergenic 35.0%
TTAGAGAAAAATCGAAGCAG+AGG + chr1_2:49145699-49145718 Msa0074510:CDS 35.0%
AAGGGATCAGGAAGAATTTA+AGG + chr1_2:49145758-49145777 Msa0074510:CDS 35.0%
TCATCTTCAGATTTGAAGGA+CGG + chr1_2:49145828-49145847 Msa0074510:CDS 35.0%
TCATGTAGAACCAACCAATA+TGG + chr1_2:49146064-49146083 Msa0074510:CDS 35.0%
TCAAAGTTCTCCATATTGGT+TGG - chr1_2:49146077-49146096 None:intergenic 35.0%
ACAACAATCTTTGACGATCT+TGG - chr1_2:49146221-49146240 None:intergenic 35.0%
AGAAAATTATGCGGAGAACA+AGG - chr1_2:49146296-49146315 None:intergenic 35.0%
TGTTCTGGCAGAAAATTATG+CGG - chr1_2:49146305-49146324 None:intergenic 35.0%
! CATAATTTTCTGCCAGAACA+TGG + chr1_2:49146305-49146324 Msa0074510:CDS 35.0%
! GTCTTTTAGGCACAATTCTT+TGG + chr1_2:49146406-49146425 Msa0074510:CDS 35.0%
GGAATCTAGAGAAATTGCAA+AGG + chr1_2:49146427-49146446 Msa0074510:CDS 35.0%
TCTTCCTCTCCTAGATTTAA+AGG + chr1_2:49146497-49146516 Msa0074510:CDS 35.0%
GTATCCTTTAAATCTAGGAG+AGG - chr1_2:49146504-49146523 None:intergenic 35.0%
!! AAAGTTGCTGTTATTTCCTC+TGG - chr1_2:49146569-49146588 None:intergenic 35.0%
AGAGGAAATAACAGCAACTT+TGG + chr1_2:49146568-49146587 Msa0074510:CDS 35.0%
GAGGAAATAACAGCAACTTT+GGG + chr1_2:49146569-49146588 Msa0074510:CDS 35.0%
CAAAGAAGAGATTATCAGAG+AGG + chr1_2:49146663-49146682 Msa0074510:CDS 35.0%
! AATGATAAGTTTGCTCGCAA+CGG + chr1_2:49146818-49146837 Msa0074510:CDS 35.0%
AAGAGTCTTGATCATAGACA+TGG + chr1_2:49147049-49147068 Msa0074510:CDS 35.0%
TTATCCGAAGAAGATTCAGA+AGG - chr1_2:49147313-49147332 None:intergenic 35.0%
TTCTGAATCTTCTTCGGATA+AGG + chr1_2:49147312-49147331 Msa0074510:CDS 35.0%
CGAAGAAAATTCAATGCAAG+AGG + chr1_2:49147390-49147409 Msa0074510:CDS 35.0%
TTTGGCAATTTCATAGCTAG+AGG - chr1_2:49147624-49147643 None:intergenic 35.0%
TCAACACCAGATGATAGATT+TGG - chr1_2:49147642-49147661 None:intergenic 35.0%
AAGCAGACAAAAGACAAGAA+AGG - chr1_2:49147767-49147786 None:intergenic 35.0%
GACAGATCATCTGTAAAAGA+AGG - chr1_2:49148258-49148277 None:intergenic 35.0%
TGTAGACCTCACCTTATATT+TGG + chr1_2:49148371-49148390 Msa0074510:intron 35.0%
GGAAATTATGAGAAAACACG+TGG - chr1_2:49148435-49148454 None:intergenic 35.0%
TCCATACCATAGACATCAAT+AGG + chr1_2:49148452-49148471 Msa0074510:intron 35.0%
ACCTATTGATGTCTATGGTA+TGG - chr1_2:49148456-49148475 None:intergenic 35.0%
TAGTCACCTATTGATGTCTA+TGG - chr1_2:49148461-49148480 None:intergenic 35.0%
AAGAATGTGGCAAGCTAAAA+AGG - chr1_2:49148602-49148621 None:intergenic 35.0%
TTCAATTTGCATGGTAGTCA+TGG + chr1_2:49148639-49148658 Msa0074510:intron 35.0%
TCAATCTCTTAATGCCTTTG+AGG + chr1_2:49148825-49148844 Msa0074510:intron 35.0%
TTGTTAAGATATACACCCTC+CGG - chr1_2:49149000-49149019 None:intergenic 35.0%
AGCAACAAATTCATTTGTGC+TGG - chr1_2:49149093-49149112 None:intergenic 35.0%
! TGTTTCTGTGTTTGAAGATC+TGG + chr1_2:49149540-49149559 Msa0074510:CDS 35.0%
TGTTTGAAGATCTGGAAGAT+AGG + chr1_2:49149548-49149567 Msa0074510:CDS 35.0%
GTGATTTGACTACTTGTTCA+AGG + chr1_2:49149575-49149594 Msa0074510:CDS 35.0%
TGACAATTCCTGAATTGATG+CGG - chr1_2:49149624-49149643 None:intergenic 35.0%
GATTTAGTGGCAGAAATAGT+CGG + chr1_2:49149874-49149893 Msa0074510:CDS 35.0%
! ATCTAGAAATTTTGTACCCC+CGG + chr1_2:49149898-49149917 Msa0074510:exon 35.0%
CCTACTTGATTTACATCACT+AGG - chr1_2:49149949-49149968 None:intergenic 35.0%
CCTAGTGATGTAAATCAAGT+AGG + chr1_2:49149946-49149965 Msa0074510:three_prime_UTR 35.0%
GAGGATGTGAATAAGTTTAG+TGG + chr1_2:49150036-49150055 Msa0074510:three_prime_UTR 35.0%
AAATTGAAGAGAGCTAACCA+TGG + chr1_2:49150059-49150078 Msa0074510:three_prime_UTR 35.0%
AGAGACGTTATTGGAAGAGT+GGG - chr1_2:49144211-49144230 None:intergenic 40.0%
!! TGTGGAGAGAGAAGCATTAA+TGG - chr1_2:49144234-49144253 None:intergenic 40.0%
AGAAGAAAAACCCTAAGAGG+AGG - chr1_2:49144458-49144477 None:intergenic 40.0%
GAGAGAAGAAAAACCCTAAG+AGG - chr1_2:49144461-49144480 None:intergenic 40.0%
! TAACTTTTCTGCGGTGGTAT+CGG + chr1_2:49144940-49144959 Msa0074510:intron 40.0%
CTAGAATCAGGAGAGAAATC+CGG - chr1_2:49145257-49145276 None:intergenic 40.0%
!! TCTCCTGATTCTAGTTTCTC+CGG + chr1_2:49145263-49145282 Msa0074510:CDS 40.0%
CAAGGTTGCAGAGAAAGATT+CGG + chr1_2:49145289-49145308 Msa0074510:CDS 40.0%
CAATCTAGCTATAACACCTG+GGG - chr1_2:49145607-49145626 None:intergenic 40.0%
! TTGTTATTAGGCTGCTGAGA+TGG - chr1_2:49145648-49145667 None:intergenic 40.0%
!! TCCTTGTGCTGCTTGTTATT+AGG - chr1_2:49145660-49145679 None:intergenic 40.0%
GAAAAATCGAAGCAGAGGAA+CGG + chr1_2:49145704-49145723 Msa0074510:CDS 40.0%
GAAAATCTTGATACGTCGCT+AGG - chr1_2:49145902-49145921 None:intergenic 40.0%
AGAGTTCCATGATACACTTG+AGG + chr1_2:49145932-49145951 Msa0074510:CDS 40.0%
!! ATTGGTTGGTTCTACATGAC+CGG - chr1_2:49146063-49146082 None:intergenic 40.0%
TCAGCATGATTTCCATGTTC+TGG - chr1_2:49146320-49146339 None:intergenic 40.0%
TAAATTTGCCTGACAGTGCA+AGG + chr1_2:49146384-49146403 Msa0074510:CDS 40.0%
ATAGTTCAAGCAGTGCTTCT+GGG + chr1_2:49146534-49146553 Msa0074510:CDS 40.0%
ACAGATGATTCACTAGAACG+CGG - chr1_2:49146632-49146651 None:intergenic 40.0%
TGAATCATCTGTGAGTAGAG+AGG + chr1_2:49146640-49146659 Msa0074510:CDS 40.0%
AGAAGAGATTATCAGAGAGG+TGG + chr1_2:49146666-49146685 Msa0074510:CDS 40.0%
ATTATCAGAGAGGTGGAAGA+TGG + chr1_2:49146673-49146692 Msa0074510:CDS 40.0%
TTCCCTGGTAAGAGAATGAA+GGG + chr1_2:49146758-49146777 Msa0074510:CDS 40.0%
TACCCTTCATTCTCTTACCA+GGG - chr1_2:49146763-49146782 None:intergenic 40.0%
! TGATCGATATATGGTGCCAA+AGG + chr1_2:49146997-49147016 Msa0074510:CDS 40.0%
TATCTGGTCACAAGAAGTCT+TGG + chr1_2:49147092-49147111 Msa0074510:CDS 40.0%
GGGTGAATCTTCTTCAAGAT+TGG - chr1_2:49147191-49147210 None:intergenic 40.0%
AGAAGATTCACCCAATCTTG+AGG + chr1_2:49147198-49147217 Msa0074510:CDS 40.0%
! TTTATCTCTAAGGGGCTCAA+AGG - chr1_2:49147239-49147258 None:intergenic 40.0%
TAAGGTTCTTCCTGGATCAT+CGG + chr1_2:49147330-49147349 Msa0074510:CDS 40.0%
ATATTTCAGGACGTATCAGC+TGG + chr1_2:49148129-49148148 Msa0074510:intron 40.0%
TGATCAGCATCTTTACAGCA+TGG - chr1_2:49148210-49148229 None:intergenic 40.0%
TCAAGAACAGAGATTGGACT+GGG - chr1_2:49148234-49148253 None:intergenic 40.0%
ATCAAGAACAGAGATTGGAC+TGG - chr1_2:49148235-49148254 None:intergenic 40.0%
GAAGGATCAAGAACAGAGAT+TGG - chr1_2:49148240-49148259 None:intergenic 40.0%
TACCAGTTTCCTTACCTTGT+AGG - chr1_2:49148317-49148336 None:intergenic 40.0%
! ATAGCAAGGGTGTGTTTCAT+GGG + chr1_2:49148761-49148780 Msa0074510:intron 40.0%
GTCTTAGTATATACACCCTC+CGG + chr1_2:49148847-49148866 Msa0074510:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1_2:49148982-49149001 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1_2:49148981-49149000 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr1_2:49148981-49149000 Msa0074510:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr1_2:49148982-49149001 Msa0074510:intron 40.0%
! GAAAGGTTTGAAGCAGAAGA+TGG - chr1_2:49149127-49149146 None:intergenic 40.0%
TCGTCACTTGAAACTAGCAT+AGG - chr1_2:49149352-49149371 None:intergenic 40.0%
! CTAGTTTCAAGTGACGAAGA+TGG + chr1_2:49149355-49149374 Msa0074510:CDS 40.0%
TATGGAGAACTGAAGATAGC+TGG + chr1_2:49149416-49149435 Msa0074510:CDS 40.0%
ATGGAGAACTGAAGATAGCT+GGG + chr1_2:49149417-49149436 Msa0074510:CDS 40.0%
CAAACACAGAAACACTCACA+GGG - chr1_2:49149534-49149553 None:intergenic 40.0%
TCAAACACAGAAACACTCAC+AGG - chr1_2:49149535-49149554 None:intergenic 40.0%
CTACTTGTTCAAGGTCTGAA+AGG + chr1_2:49149584-49149603 Msa0074510:CDS 40.0%
! AGAAATGCAGCCAAACCTTT+TGG + chr1_2:49149682-49149701 Msa0074510:CDS 40.0%
!! ATGATTAACGGGCTTCAAGA+TGG + chr1_2:49149712-49149731 Msa0074510:CDS 40.0%
! ATGGTCTTTTCCAGATGCTA+GGG + chr1_2:49149731-49149750 Msa0074510:CDS 40.0%
! TCTAGAAATTTTGTACCCCC+GGG + chr1_2:49149899-49149918 Msa0074510:exon 40.0%
CATCACTAGGAAACATCCTA+AGG - chr1_2:49149936-49149955 None:intergenic 40.0%
CTAACCATGGTAAATCAGCT+TGG + chr1_2:49150072-49150091 Msa0074510:three_prime_UTR 40.0%
! GAATCCAAGCTGATTTACCA+TGG - chr1_2:49150079-49150098 None:intergenic 40.0%
GAGAGACGTTATTGGAAGAG+TGG - chr1_2:49144212-49144231 None:intergenic 45.0%
GGGTGTGTAGTAGTAGTAGT+GGG - chr1_2:49144266-49144285 None:intergenic 45.0%
AGGGTGTGTAGTAGTAGTAG+TGG - chr1_2:49144267-49144286 None:intergenic 45.0%
! GAAAAAGTGTGGAGCGTGAT+AGG - chr1_2:49144380-49144399 None:intergenic 45.0%
AGAAAAACCCTAAGAGGAGG+AGG - chr1_2:49144455-49144474 None:intergenic 45.0%
AGAAATGACGCAGATCGAGA+AGG - chr1_2:49144489-49144508 None:intergenic 45.0%
TCTTTCATGATTCCTCGCCA+TGG + chr1_2:49144512-49144531 Msa0074510:exon 45.0%
GATGAAGCTTGGAGTTGTTG+CGG - chr1_2:49144554-49144573 None:intergenic 45.0%
TCCAAGCTTCATCTTCCTCA+AGG + chr1_2:49144561-49144580 Msa0074510:CDS 45.0%
ACCTTGAGGAAGATGAAGCT+TGG - chr1_2:49144565-49144584 None:intergenic 45.0%
CTTCTCTTGGATTCAGTTGC+TGG - chr1_2:49145582-49145601 None:intergenic 45.0%
! GCTAGATTGATGGGTCTTGA+CGG + chr1_2:49145618-49145637 Msa0074510:CDS 45.0%
GCCTAATAACAAGCAGCACA+AGG + chr1_2:49145656-49145675 Msa0074510:CDS 45.0%
ACCTACCACTCTCTACCTTT+GGG - chr1_2:49145806-49145825 None:intergenic 45.0%
TACCTACCACTCTCTACCTT+TGG - chr1_2:49145807-49145826 None:intergenic 45.0%
ACCCCTTTCCAATCACATTC+CGG + chr1_2:49146041-49146060 Msa0074510:CDS 45.0%
ACCGGAATGTGATTGGAAAG+GGG - chr1_2:49146045-49146064 None:intergenic 45.0%
GACCGGAATGTGATTGGAAA+GGG - chr1_2:49146046-49146065 None:intergenic 45.0%
TGACCGGAATGTGATTGGAA+AGG - chr1_2:49146047-49146066 None:intergenic 45.0%
CTACATGACCGGAATGTGAT+TGG - chr1_2:49146052-49146071 None:intergenic 45.0%
CAACAGGGGTGAATTACAAC+AGG + chr1_2:49146129-49146148 Msa0074510:CDS 45.0%
!! TTTCATCAGAAGCATCGCGA+TGG + chr1_2:49146152-49146171 Msa0074510:CDS 45.0%
! AAGCATCGCGATGGTTATCA+TGG + chr1_2:49146161-49146180 Msa0074510:CDS 45.0%
! TCGCACGTCTTTTGTCGAAT+TGG - chr1_2:49146187-49146206 None:intergenic 45.0%
CTAAAAGACCTTGCACTGTC+AGG - chr1_2:49146395-49146414 None:intergenic 45.0%
! CTGACAGTGCAAGGTCTTTT+AGG + chr1_2:49146393-49146412 Msa0074510:CDS 45.0%
GATAGTTCAAGCAGTGCTTC+TGG + chr1_2:49146533-49146552 Msa0074510:CDS 45.0%
! TTCTGGGAATGAATCTCCAG+AGG + chr1_2:49146550-49146569 Msa0074510:CDS 45.0%
GTTCCCTGGTAAGAGAATGA+AGG + chr1_2:49146757-49146776 Msa0074510:CDS 45.0%
GTACCCTTCATTCTCTTACC+AGG - chr1_2:49146764-49146783 None:intergenic 45.0%
AGTGGTTCAACCAACTCAGA+AGG - chr1_2:49146848-49146867 None:intergenic 45.0%
!! TTCTGAGTTGGTTGAACCAC+TGG + chr1_2:49146847-49146866 Msa0074510:CDS 45.0%
!! TCTGAGTTGGTTGAACCACT+GGG + chr1_2:49146848-49146867 Msa0074510:CDS 45.0%
CCAAAGACAGTAGATGAAGC+AGG - chr1_2:49146938-49146957 None:intergenic 45.0%
CCTGCTTCATCTACTGTCTT+TGG + chr1_2:49146935-49146954 Msa0074510:CDS 45.0%
TCAGCACGCAAGAATGTTCT+AGG - chr1_2:49146965-49146984 None:intergenic 45.0%
! TGGTGCCAAAGGACCTTAAA+CGG + chr1_2:49147008-49147027 Msa0074510:CDS 45.0%
TTCACCCAATCTTGAGGTTC+AGG + chr1_2:49147204-49147223 Msa0074510:CDS 45.0%
TGGGCCTTCTGAATCTTCTT+CGG + chr1_2:49147306-49147325 Msa0074510:CDS 45.0%
TCTTCGGATAAGGTTCTTCC+TGG + chr1_2:49147322-49147341 Msa0074510:CDS 45.0%
! TCGGCTCGTGTCTTAGTAAA+AGG + chr1_2:49147349-49147368 Msa0074510:CDS 45.0%
TTGCGCAAAACGTGTAGTGA+AGG - chr1_2:49147740-49147759 None:intergenic 45.0%
GACCTACAAGGTAAGGAAAC+TGG + chr1_2:49148312-49148331 Msa0074510:intron 45.0%
CATGAAACACACCCTTGCTA+TGG - chr1_2:49148762-49148781 None:intergenic 45.0%
! CATAGCAAGGGTGTGTTTCA+TGG + chr1_2:49148760-49148779 Msa0074510:intron 45.0%
CAGATTCCAACTTCAGCAAC+TGG - chr1_2:49149312-49149331 None:intergenic 45.0%
GTTGGAATCTGAAGACCATG+TGG + chr1_2:49149321-49149340 Msa0074510:CDS 45.0%
GAATCTGAAGACCATGTGGA+GGG + chr1_2:49149325-49149344 Msa0074510:CDS 45.0%
! CTTTTCGACCGCATCAATTC+AGG + chr1_2:49149613-49149632 Msa0074510:CDS 45.0%
! GATGGTCTTTTCCAGATGCT+AGG + chr1_2:49149730-49149749 Msa0074510:CDS 45.0%
CATCATCCTCTACCTTTCCT+TGG - chr1_2:49149759-49149778 None:intergenic 45.0%
AAAGGTAGAGGATGATGTCC+TGG + chr1_2:49149762-49149781 Msa0074510:CDS 45.0%
AAGGTAGAGGATGATGTCCT+GGG + chr1_2:49149763-49149782 Msa0074510:CDS 45.0%
! AGTTGCTGATTGAGGAGTCT+CGG + chr1_2:49149788-49149807 Msa0074510:CDS 45.0%
TAAGGACAACTATTCTCCCG+GGG - chr1_2:49149918-49149937 None:intergenic 45.0%
CTAAGGACAACTATTCTCCC+GGG - chr1_2:49149919-49149938 None:intergenic 45.0%
CCTAAGGACAACTATTCTCC+CGG - chr1_2:49149920-49149939 None:intergenic 45.0%
AGAGAGAGGTGAGAGAGTGA+GGG - chr1_2:49144184-49144203 None:intergenic 50.0%
AAAACCCTAAGAGGAGGAGG+AGG - chr1_2:49144452-49144471 None:intergenic 50.0%
AGAGAGAGAGAGTGACCTTG+AGG - chr1_2:49144579-49144598 None:intergenic 50.0%
CCACCGGAGAAACTAGAATC+AGG - chr1_2:49145269-49145288 None:intergenic 50.0%
!! CCTGATTCTAGTTTCTCCGG+TGG + chr1_2:49145266-49145285 Msa0074510:CDS 50.0%
!! TTCTAGTTTCTCCGGTGGCA+AGG + chr1_2:49145271-49145290 Msa0074510:CDS 50.0%
TTTCTCTGCAACCTTGCCAC+CGG - chr1_2:49145285-49145304 None:intergenic 50.0%
GAATCCAAGAGAAGATCCCC+AGG + chr1_2:49145588-49145607 Msa0074510:CDS 50.0%
AACACCTGGGGATCTTCTCT+TGG - chr1_2:49145595-49145614 None:intergenic 50.0%
AGCAGAGGAACGGCAAATGA+CGG + chr1_2:49145714-49145733 Msa0074510:CDS 50.0%
TTGAGCTCCTCCTAGACGAT+CGG - chr1_2:49145740-49145759 None:intergenic 50.0%
ATCGTCTAGGAGGAGCTCAA+GGG + chr1_2:49145740-49145759 Msa0074510:CDS 50.0%
TGAGGTCTCAGAGATCCCAA+AGG + chr1_2:49145788-49145807 Msa0074510:CDS 50.0%
GAGATCCCAAAGGTAGAGAG+TGG + chr1_2:49145798-49145817 Msa0074510:CDS 50.0%
TCCCAAAGGTAGAGAGTGGT+AGG + chr1_2:49145802-49145821 Msa0074510:CDS 50.0%
TTGATACGTCGCTAGGCGTT+TGG - chr1_2:49145895-49145914 None:intergenic 50.0%
CCAACGCCTCAAGTGTATCA+TGG - chr1_2:49145941-49145960 None:intergenic 50.0%
CCATGATACACTTGAGGCGT+TGG + chr1_2:49145938-49145957 Msa0074510:CDS 50.0%
!! TGAGGCGTTGGACTCTAACA+AGG + chr1_2:49145950-49145969 Msa0074510:CDS 50.0%
AGGTCAGATAGGGAGTCAAC+AGG + chr1_2:49146113-49146132 Msa0074510:CDS 50.0%
GGTCAGATAGGGAGTCAACA+GGG + chr1_2:49146114-49146133 Msa0074510:CDS 50.0%
GTCAGATAGGGAGTCAACAG+GGG + chr1_2:49146115-49146134 Msa0074510:CDS 50.0%
GATGGCACACAAGTCTCAAG+AGG + chr1_2:49146691-49146710 Msa0074510:CDS 50.0%
! CACAAGTCTCAAGAGGTGCA+AGG + chr1_2:49146698-49146717 Msa0074510:CDS 50.0%
TCATTGAAACCTTCCCCGCT+AGG - chr1_2:49146803-49146822 None:intergenic 50.0%
GTATCAGCAGCAAGGATGGT+TGG + chr1_2:49146870-49146889 Msa0074510:CDS 50.0%
GGTGCCAAAGGACCTTAAAC+GGG + chr1_2:49147009-49147028 Msa0074510:CDS 50.0%
! CTCTCCCGTTTAAGGTCCTT+TGG - chr1_2:49147016-49147035 None:intergenic 50.0%
CAAAGGACCTTAAACGGGAG+AGG + chr1_2:49147014-49147033 Msa0074510:CDS 50.0%
CTCTTCTCCTCTCCCGTTTA+AGG - chr1_2:49147024-49147043 None:intergenic 50.0%
GTCTGTGCATTCACTGAAGC+AGG + chr1_2:49147114-49147133 Msa0074510:CDS 50.0%
GGAGCCTGAACCTCAAGATT+GGG - chr1_2:49147211-49147230 None:intergenic 50.0%
AGGAGCCTGAACCTCAAGAT+TGG - chr1_2:49147212-49147231 None:intergenic 50.0%
CTAAGGGGCTCAAAGGTTTC+AGG - chr1_2:49147232-49147251 None:intergenic 50.0%
!! GACGTATCAGCTGGTTCTAC+TGG + chr1_2:49148138-49148157 Msa0074510:CDS 50.0%
!! GTATCAGCTGGTTCTACTGG+TGG + chr1_2:49148141-49148160 Msa0074510:CDS 50.0%
GGAGATTCATGTCCAGGTAC+AGG - chr1_2:49148189-49148208 None:intergenic 50.0%
CAGCATGGAGATTCATGTCC+AGG - chr1_2:49148195-49148214 None:intergenic 50.0%
!! AGTGTCAGTGCTGACCTACA+AGG + chr1_2:49148300-49148319 Msa0074510:CDS 50.0%
!! CAGTGCTGACCTACAAGGTA+AGG + chr1_2:49148305-49148324 Msa0074510:intron 50.0%
GCAACTCCAGTTGCTGAAGT+TGG + chr1_2:49149303-49149322 Msa0074510:CDS 50.0%
GGAATCTGAAGACCATGTGG+AGG + chr1_2:49149324-49149343 Msa0074510:CDS 50.0%
TTCAAGTGACGAAGATGGCG+TGG + chr1_2:49149360-49149379 Msa0074510:CDS 50.0%
AATCTACTGACCCACAGCCA+TGG + chr1_2:49149656-49149675 Msa0074510:CDS 50.0%
ATCTACTGACCCACAGCCAT+GGG + chr1_2:49149657-49149676 Msa0074510:CDS 50.0%
CATTTCTCACCCATGGCTGT+GGG - chr1_2:49149669-49149688 None:intergenic 50.0%
TTGGCTGCATTTCTCACCCA+TGG - chr1_2:49149676-49149695 None:intergenic 50.0%
TTCCAGATGCTAGGGAACCA+AGG + chr1_2:49149739-49149758 Msa0074510:CDS 50.0%
TTCCTTGGTTCCCTAGCATC+TGG - chr1_2:49149744-49149763 None:intergenic 50.0%
GATGCTAGGGAACCAAGGAA+AGG + chr1_2:49149744-49149763 Msa0074510:CDS 50.0%
AGGGAACCAAGGAAAGGTAG+AGG + chr1_2:49149750-49149769 Msa0074510:CDS 50.0%
AAGGACAACTATTCTCCCGG+GGG - chr1_2:49149917-49149936 None:intergenic 50.0%
CCGGGAGAATAGTTGTCCTT+AGG + chr1_2:49149917-49149936 Msa0074510:three_prime_UTR 50.0%
TGAGAGAGTGAGGGAGAGTG+GGG - chr1_2:49144175-49144194 None:intergenic 55.0%
GTGAGAGAGTGAGGGAGAGT+GGG - chr1_2:49144176-49144195 None:intergenic 55.0%
GAGAGAGAGGTGAGAGAGTG+AGG - chr1_2:49144185-49144204 None:intergenic 55.0%
GAAGAGTGGGTGTGAGAGAG+AGG - chr1_2:49144198-49144217 None:intergenic 55.0%
GGAGGAGGAGGAGAATAGTG+AGG - chr1_2:49144428-49144447 None:intergenic 55.0%
TCCTCCTCCTCCTCCTCTTA+GGG + chr1_2:49144445-49144464 Msa0074510:five_prime_UTR 55.0%
CAAATGACGGCCGATCGTCT+AGG + chr1_2:49145727-49145746 Msa0074510:CDS 55.0%
GATCGTCTAGGAGGAGCTCA+AGG + chr1_2:49145739-49145758 Msa0074510:CDS 55.0%
TAGGAGGAGCTCAAGGGATC+AGG + chr1_2:49145746-49145765 Msa0074510:CDS 55.0%
GCTGATATGCTAGCGTTCCC+TGG + chr1_2:49146743-49146762 Msa0074510:CDS 55.0%
GCTAGGCAGGCTGTCAAAAC+GGG - chr1_2:49146786-49146805 None:intergenic 55.0%
CGCTAGGCAGGCTGTCAAAA+CGG - chr1_2:49146787-49146806 None:intergenic 55.0%
!! CGTTTTGACAGCCTGCCTAG+CGG + chr1_2:49146785-49146804 Msa0074510:CDS 55.0%
!! GTTTTGACAGCCTGCCTAGC+GGG + chr1_2:49146786-49146805 Msa0074510:CDS 55.0%
! TTTTGACAGCCTGCCTAGCG+GGG + chr1_2:49146787-49146806 Msa0074510:CDS 55.0%
CAACGGCGAACCTTCTGAGT+TGG + chr1_2:49146835-49146854 Msa0074510:CDS 55.0%
ACCACTGGGTATCAGCAGCA+AGG + chr1_2:49146862-49146881 Msa0074510:CDS 55.0%
TCCTTGCTGCTGATACCCAG+TGG - chr1_2:49146866-49146885 None:intergenic 55.0%
CTGGGTATCAGCAGCAAGGA+TGG + chr1_2:49146866-49146885 Msa0074510:CDS 55.0%
TCAGCAGCAAGGATGGTTGG+AGG + chr1_2:49146873-49146892 Msa0074510:CDS 55.0%
CAGCAGCAAGGATGGTTGGA+GGG + chr1_2:49146874-49146893 Msa0074510:CDS 55.0%
AAGACACGAGCCGATGATCC+AGG - chr1_2:49147343-49147362 None:intergenic 55.0%
CAGGTACAGGTGCTTCAGAG+AGG - chr1_2:49148176-49148195 None:intergenic 55.0%
!! CTCTCTGAAGCACCTGTACC+TGG + chr1_2:49148174-49148193 Msa0074510:CDS 55.0%
CTAGCATAGGTCCCTCCACA+TGG - chr1_2:49149339-49149358 None:intergenic 55.0%
GCATTTCTCACCCATGGCTG+TGG - chr1_2:49149670-49149689 None:intergenic 55.0%
CCTCAATCAGCAACTTGCCC+AGG - chr1_2:49149783-49149802 None:intergenic 55.0%
! CCTGGGCAAGTTGCTGATTG+AGG + chr1_2:49149780-49149799 Msa0074510:CDS 55.0%
! TGCTGATTGAGGAGTCTCGG+TGG + chr1_2:49149791-49149810 Msa0074510:CDS 55.0%
GGTGAGAGAGTGAGGGAGAG+TGG - chr1_2:49144177-49144196 None:intergenic 60.0%
CTAAGAGGAGGAGGAGGAGG+AGG - chr1_2:49144446-49144465 None:intergenic 60.0%
CTCCTCCTCCTCCTCCTCTT+AGG + chr1_2:49144444-49144463 Msa0074510:five_prime_UTR 60.0%
ACCCTAAGAGGAGGAGGAGG+AGG - chr1_2:49144449-49144468 None:intergenic 60.0%
ATGACGGCCGATCGTCTAGG+AGG + chr1_2:49145730-49145749 Msa0074510:CDS 60.0%
! AAGAGGTGCAAGGCACCAGC+AGG + chr1_2:49146708-49146727 Msa0074510:CDS 60.0%
CACCAGCAGGAGCAGCACAT+TGG + chr1_2:49146721-49146740 Msa0074510:CDS 60.0%
! AGCCAATGTGCTGCTCCTGC+TGG - chr1_2:49146726-49146745 None:intergenic 60.0%
TGAAACCTTCCCCGCTAGGC+AGG - chr1_2:49146799-49146818 None:intergenic 60.0%
AGAGGAGGAGGAGGAGGAGG+AGG - chr1_2:49144443-49144462 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr1_2:49144437-49144456 None:intergenic 70.0%
GACAGCCTGCCTAGCGGGGA+AGG + chr1_2:49146791-49146810 Msa0074510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49144151 49150133 49144151 ID=Msa0074510;Name=Msa0074510
chr1_2 mRNA 49144151 49150133 49144151 ID=Msa0074510-mRNA-1;Parent=Msa0074510;Name=Msa0074510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=380|1|1|1|1|1|5|230|949
chr1_2 exon 49144151 49144582 49144151 ID=Msa0074510-mRNA-1:exon:14991;Parent=Msa0074510-mRNA-1
chr1_2 exon 49145222 49145310 49145222 ID=Msa0074510-mRNA-1:exon:14992;Parent=Msa0074510-mRNA-1
chr1_2 exon 49145498 49147411 49145498 ID=Msa0074510-mRNA-1:exon:14993;Parent=Msa0074510-mRNA-1
chr1_2 exon 49148138 49148321 49148138 ID=Msa0074510-mRNA-1:exon:14994;Parent=Msa0074510-mRNA-1
chr1_2 exon 49149293 49150133 49149293 ID=Msa0074510-mRNA-1:exon:14995;Parent=Msa0074510-mRNA-1
chr1_2 five_prime_UTR 49144151 49144530 49144151 ID=Msa0074510-mRNA-1:five_prime_utr;Parent=Msa0074510-mRNA-1
chr1_2 CDS 49144531 49144582 49144531 ID=Msa0074510-mRNA-1:cds;Parent=Msa0074510-mRNA-1
chr1_2 CDS 49145222 49145310 49145222 ID=Msa0074510-mRNA-1:cds;Parent=Msa0074510-mRNA-1
chr1_2 CDS 49145498 49147411 49145498 ID=Msa0074510-mRNA-1:cds;Parent=Msa0074510-mRNA-1
chr1_2 CDS 49148138 49148321 49148138 ID=Msa0074510-mRNA-1:cds;Parent=Msa0074510-mRNA-1
chr1_2 CDS 49149293 49149903 49149293 ID=Msa0074510-mRNA-1:cds;Parent=Msa0074510-mRNA-1
chr1_2 three_prime_UTR 49149904 49150133 49149904 ID=Msa0074510-mRNA-1:three_prime_utr;Parent=Msa0074510-mRNA-1
Gene Sequence

>Msa0074510

ATGGACAAAATTAAATCTCACCGCAACAACTCCAAGCTTCATCTTCCTCAAGGGAAAGAGCAGATTCATAAACAGCAACAACATCCGGATTTCTCTCCTGATTCTAGTTTCTCCGGTGGCAAGGTTGCAGAGAAAGATTCGTTCTCATTTAAATTTGGGTGGAAATCTTCTAAACAATCGGGTGGAACTCCAATTAAGAAGTTATTAGCTGAAGAGATGTCACCAGCAACTGAATCCAAGAGAAGATCCCCAGGTGTTATAGCTAGATTGATGGGTCTTGACGGTCTTCCATCTCAGCAGCCTAATAACAAGCAGCACAAGGATCTACAGAAATCAACACCTTTAGAGAAAAATCGAAGCAGAGGAACGGCAAATGACGGCCGATCGTCTAGGAGGAGCTCAAGGGATCAGGAAGAATTTAAGGATGTATTTGAGGTCTCAGAGATCCCAAAGGTAGAGAGTGGTAGGTATTCATCTTCAGATTTGAAGGACGGTGAAGATGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTAGCGACGTATCAAGATTTTCAGTCTTCACAAGAGTTCCATGATACACTTGAGGCGTTGGACTCTAACAAGGATCTTCTGCTAAAATACTTCAAGCGGCCAGACTCTTTGTTTAAAAAGCATTTGAATGATCTGCAAGCTACCCCTTTCCAATCACATTCCGGTCATGTAGAACCAACCAATATGGAGAACTTTGAACATGATTTCAATTTGAGGTCAGATAGGGAGTCAACAGGGGTGAATTACAACAGGTTTCATCAGAAGCATCGCGATGGTTATCATGGCCAATTCGACAAAAGACGTGCGATGCATAATTCACCAAGATCGTCAAAGATTGTTGTCCTAAAACCTAATATGGGAAAATTTCAGAGTGGTACTAGAATTGAATCATCACCTTGTTCTCCGCATAATTTTCTGCCAGAACATGGAAATCATGCTGAATTTTCAGATGTCAGATTTAGAGATACTGAACTGTATCAAAAAATAAATTTGCCTGACAGTGCAAGGTCTTTTAGGCACAATTCTTTGGAATCTAGAGAAATTGCAAAGGAAGTAACTAGGCAAATGAAAAACAATCTGAGCAATGGTTGCATGATGTCTTCCTCTCCTAGATTTAAAGGATACTCTAGACATGATAGTTCAAGCAGTGCTTCTGGGAATGAATCTCCAGAGGAAATAACAGCAACTTTGGGTAAGCCGTTTGACTTAAATAGACATAGCAGACGGTCACCGCGTTCTAGTGAATCATCTGTGAGTAGAGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAGATGGCACACAAGTCTCAAGAGGTGCAAGGCACCAGCAGGAGCAGCACATTGGCTGATATGCTAGCGTTCCCTGGTAAGAGAATGAAGGGTACCCGTTTTGACAGCCTGCCTAGCGGGGAAGGTTTCAATGATAAGTTTGCTCGCAACGGCGAACCTTCTGAGTTGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAGGGATGCATGTATTAGTAGTTTGTCAAGGTCAAGATCTCTTCCTGCTTCATCTACTGTCTTTGGAAGTCCTAGAACATTCTTGCGTGCTGAAGCACTTCGTAATGATCGATATATGGTGCCAAAGGACCTTAAACGGGAGAGGAGAAGAGCGACAAAGAGTCTTGATCATAGACATGGTATGAATTCTAGAAGCACAATATCTGGTCACAAGAAGTCTTGGTCTGTGCATTCACTGAAGCAGGAAGTTAATGAGTTCTCTCCCGACTTAAATGAAGTTCAAAATAACATGAAGACCAATCTTGAAGAAGATTCACCCAATCTTGAGGTTCAGGCTCCTGAAACCTTTGAGCCCCTTAGAGATAAAAGTGTTGTTTGTGATGATGTTGCAGATGTATCAAATGAAAACACTGTTGGGCCTTCTGAATCTTCTTCGGATAAGGTTCTTCCTGGATCATCGGCTCGTGTCTTAGTAAAAGGCGACAGTAGTGTTGTTGACGAAGAAAATTCAATGCAAGAGGACGTATCAGCTGGTTCTACTGGTGGATTTTCAGTCCTCTCTGAAGCACCTGTACCTGGACATGAATCTCCATGCTGTAAAGATGCTGATCAACCCAGTCCAATCTCTGTTCTTGATCCTTCTTTTACAGATGATCTGTCATCTTGTTCTGAATGTTTTGGAAGTGTCAGTGCTGACCTACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGAAGACCATGTGGAGGGACCTATGCTAGTTTCAAGTGACGAAGATGGCGTGGAAGTATCTTCTGAAATGTTAGAAGGAAATACATTATGGAGAACTGAAGATAGCTGGGAGTCTTCTTACATTATTGATGTTTTGTCTGAATCTGCTATTGCTGATGCTCAAACTGATAATAATTTGGAAGTTTGGCAATCTCTAGAATGCCCTGTGAGTGTTTCTGTGTTTGAAGATCTGGAAGATAGGTACAGTGATTTGACTACTTGTTCAAGGTCTGAAAGGAGATTGCTTTTCGACCGCATCAATTCAGGAATTGTCAAGATTCATGAGCAATCTACTGACCCACAGCCATGGGTGAGAAATGCAGCCAAACCTTTTGGATCAAAAATGATTAACGGGCTTCAAGATGGTCTTTTCCAGATGCTAGGGAACCAAGGAAAGGTAGAGGATGATGTCCTGGGCAAGTTGCTGATTGAGGAGTCTCGGTGGTTGAAGTTGAGAGATGACATTGATGTAATAGGTAGAGAAGTTGAGAGATTGATAGTAGATGATTTAGTGGCAGAAATAGTCGGTATCTAG
Protein sequence

>Msa0074510

MDKIKSHRNNSKLHLPQGKEQIHKQQQHPDFSPDSSFSGGKVAEKDSFSFKFGWKSSKQSGGTPIKKLLAEEMSPATESKRRSPGVIARLMGLDGLPSQQPNNKQHKDLQKSTPLEKNRSRGTANDGRSSRRSSRDQEEFKDVFEVSEIPKVESGRYSSSDLKDGEDEMSFIEQKFMDAKRLATYQDFQSSQEFHDTLEALDSNKDLLLKYFKRPDSLFKKHLNDLQATPFQSHSGHVEPTNMENFEHDFNLRSDRESTGVNYNRFHQKHRDGYHGQFDKRRAMHNSPRSSKIVVLKPNMGKFQSGTRIESSPCSPHNFLPEHGNHAEFSDVRFRDTELYQKINLPDSARSFRHNSLESREIAKEVTRQMKNNLSNGCMMSSSPRFKGYSRHDSSSSASGNESPEEITATLGKPFDLNRHSRRSPRSSESSVSREAKKRLSERWKMAHKSQEVQGTSRSSTLADMLAFPGKRMKGTRFDSLPSGEGFNDKFARNGEPSELVEPLGISSKDGWRDACISSLSRSRSLPASSTVFGSPRTFLRAEALRNDRYMVPKDLKRERRRATKSLDHRHGMNSRSTISGHKKSWSVHSLKQEVNEFSPDLNEVQNNMKTNLEEDSPNLEVQAPETFEPLRDKSVVCDDVADVSNENTVGPSESSSDKVLPGSSARVLVKGDSSVVDEENSMQEDVSAGSTGGFSVLSEAPVPGHESPCCKDADQPSPISVLDPSFTDDLSSCSECFGSVSADLQGLRMQLQLLKLESEDHVEGPMLVSSDEDGVEVSSEMLEGNTLWRTEDSWESSYIIDVLSESAIADAQTDNNLEVWQSLECPVSVSVFEDLEDRYSDLTTCSRSERRLLFDRINSGIVKIHEQSTDPQPWVRNAAKPFGSKMINGLQDGLFQMLGNQGKVEDDVLGKLLIEESRWLKLRDDIDVIGREVERLIVDDLVAEIVGI*