AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123180 MtrunA17_Chr1g0183781 95.586 725 32 0 1 725 1 725 0.0 1362
Msa0123180 MtrunA17_Chr7g0261371 65.081 799 205 5 1 725 1 799 0.0 952
Msa0123180 MtrunA17_Chr3g0106931 66.084 286 97 0 438 723 551 836 2.95e-111 356
Msa0123180 MtrunA17_Chr3g0106931 39.130 299 182 0 14 312 6 304 2.01e-59 215
Msa0123180 MtrunA17_Chr1g0152561 52.878 278 130 1 440 716 61 338 1.22e-84 271
Msa0123180 MtrunA17_Chr3g0134761 47.604 313 157 3 414 721 27 337 8.25e-82 263
Msa0123180 MtrunA17_Chr2g0290151 52.330 279 132 1 444 721 179 457 9.14e-79 259
Msa0123180 MtrunA17_Chr4g0031431 46.263 281 150 1 438 717 351 631 1.53e-69 240
Msa0123180 MtrunA17_Chr4g0031431 25.421 653 394 17 31 634 23 631 1.48e-44 170
Msa0123180 MtrunA17_Chr4g0044411 46.545 275 146 1 440 713 373 647 2.93e-68 236
Msa0123180 MtrunA17_Chr4g0044411 31.328 399 239 11 241 629 273 646 1.12e-38 152
Msa0123180 MtrunA17_Chr7g0248251 48.327 269 136 3 443 709 370 637 3.27e-63 223
Msa0123180 MtrunA17_Chr7g0248251 26.116 605 374 15 14 589 38 598 4.21e-35 141
Msa0123180 MtrunA17_Chr1g0199321 49.077 271 137 1 440 709 345 615 1.46e-62 220
Msa0123180 MtrunA17_Chr1g0199321 27.045 599 373 14 14 587 15 574 1.84e-41 160
Msa0123180 MtrunA17_Chr7g0237931 43.110 283 157 2 427 709 324 602 1.44e-61 217
Msa0123180 MtrunA17_Chr7g0237931 25.926 459 279 14 172 591 171 607 2.14e-27 117
Msa0123180 MtrunA17_Chr8g0377151 34.016 488 251 14 242 716 283 712 2.41e-58 211
Msa0123180 MtrunA17_Chr5g0437411 39.610 308 180 5 408 709 373 680 1.08e-52 194
Msa0123180 MtrunA17_Chr2g0284461 40.830 289 164 7 441 723 397 684 2.92e-42 164
Msa0123180 MtrunA17_Chr5g0404311 28.629 496 277 14 242 716 274 713 3.02e-40 158
Msa0123180 MtrunA17_Chr5g0429231 38.129 278 166 4 443 714 37 314 4.81e-39 148
Msa0123180 MtrunA17_Chr8g0373031 27.122 483 293 11 242 714 276 709 7.01e-37 148
Msa0123180 MtrunA17_Chr7g0234671 34.247 292 180 8 426 709 159 446 5.53e-35 139
Msa0123180 MtrunA17_Chr7g0234671 26.005 423 257 12 210 589 40 449 7.21e-23 102
Msa0123180 MtrunA17_Chr7g0275081 38.433 268 154 6 451 709 182 447 8.59e-34 135
Msa0123180 MtrunA17_Chr7g0275081 40.870 115 54 2 210 310 33 147 9.29e-23 102
Msa0123180 MtrunA17_Chr5g0435041 33.333 291 184 6 431 714 11 298 2.72e-32 129
Msa0123180 MtrunA17_Chr3g0122721 35.165 273 164 7 455 717 442 711 1.81e-31 131
Msa0123180 MtrunA17_Chr3g0122721 58.974 78 30 2 236 311 273 350 2.34e-24 108
Msa0123180 MtrunA17_Chr3g0118001 31.387 274 184 2 443 713 214 486 2.29e-29 123
Msa0123180 MtrunA17_Chr4g0059201 32.374 278 180 5 455 724 437 714 3.33e-29 124
Msa0123180 MtrunA17_Chr6g0449461 33.566 286 170 9 442 714 4 282 1.80e-28 117
Msa0123180 MtrunA17_Chr3g0111451 34.375 288 179 6 433 713 34 318 2.87e-26 111
Msa0123180 MtrunA17_Chr6g0451581 28.889 270 188 2 443 709 241 509 7.98e-26 112
Msa0123180 MtrunA17_Chr1g0149941 32.632 285 178 8 442 713 175 458 2.36e-24 108
Msa0123180 MtrunA17_Chr3g0137061 30.822 292 186 7 434 713 107 394 2.71e-24 107
Msa0123180 MtrunA17_Chr3g0117851 31.387 274 147 7 453 720 391 629 6.74e-24 107
Msa0123180 MtrunA17_Chr3g0117851 26.913 379 227 8 242 596 276 628 1.53e-22 102
Msa0123180 MtrunA17_Chr1g0189811 36.398 261 156 5 458 709 174 433 4.81e-22 99.8
Msa0123180 MtrunA17_Chr1g0189811 25.792 442 237 12 214 596 34 443 6.25e-22 99.4
Msa0123180 MtrunA17_Chr4g0013091 57.971 69 29 0 242 310 314 382 6.77e-22 100
Msa0123180 MtrunA17_Chr4g0013091 32.119 302 186 10 434 723 411 705 2.76e-19 92.8
Msa0123180 MtrunA17_Chr5g0413681 28.177 362 222 11 245 591 284 622 7.78e-22 100
Msa0123180 MtrunA17_Chr4g0044631 52.703 74 35 0 238 311 11 84 6.21e-21 95.9
Msa0123180 MtrunA17_Chr4g0048811 32.843 204 131 5 514 714 121 321 1.83e-20 93.2
Msa0123180 MtrunA17_Chr4g0048811 46.377 69 36 1 240 307 4 72 5.59e-16 79.7
Msa0123180 MtrunA17_Chr8g0350681 29.675 246 160 7 480 717 238 478 9.27e-19 90.5
Msa0123180 MtrunA17_Chr8g0350681 30.882 204 131 5 455 653 338 536 4.30e-11 66.2
Msa0123180 MtrunA17_Chr3g0110121 47.297 74 39 0 240 313 35 108 1.51e-18 89.0
Msa0123180 MtrunA17_Chr1g0198984 55.932 59 26 0 254 312 1 59 1.77e-18 81.6
Msa0123180 MtrunA17_Chr8g0346441 21.350 637 416 16 4 611 10 590 5.22e-18 89.0
Msa0123180 MtrunA17_Chr5g0420471 45.205 73 40 0 242 314 26 98 5.26e-18 87.4
Msa0123180 MtrunA17_Chr5g0434171 41.892 74 43 0 240 313 34 107 1.36e-17 86.3
Msa0123180 MtrunA17_Chr6g0479261 43.836 73 41 0 242 314 26 98 1.50e-17 85.9
Msa0123180 MtrunA17_Chr2g0280671 28.750 240 162 4 484 717 147 383 1.67e-17 85.1
Msa0123180 MtrunA17_Chr2g0280671 53.125 64 30 0 244 307 18 81 3.18e-17 84.3
Msa0123180 MtrunA17_Chr1g0177261 46.753 77 35 2 243 313 9 85 6.04e-16 80.9
Msa0123180 MtrunA17_Chr8g0384041 44.928 69 38 0 239 307 8 76 9.61e-16 80.1
Msa0123180 MtrunA17_Chr1g0177271 46.753 77 35 2 243 313 9 85 1.10e-15 80.1
Msa0123180 MtrunA17_Chr1g0177281 46.753 77 35 2 243 313 9 85 1.42e-15 79.7
Msa0123180 MtrunA17_Chr2g0283691 28.723 282 196 5 440 717 86 366 2.14e-15 79.3
Msa0123180 MtrunA17_Chr3g0129811 42.857 70 40 0 240 309 82 151 3.47e-15 79.0
Msa0123180 MtrunA17_Chr2g0322021 47.297 74 35 2 242 311 7 80 4.65e-15 77.8
Msa0123180 MtrunA17_Chr5g0400971 42.529 87 50 0 242 328 68 154 5.02e-15 78.2
Msa0123180 MtrunA17_Chr7g0246731 29.796 245 161 7 480 717 237 477 1.15e-14 77.4
Msa0123180 MtrunA17_Chr1g0196911 34.351 131 77 4 242 368 507 632 1.31e-14 78.2
Msa0123180 MtrunA17_Chr7g0275961 21.807 321 223 8 10 311 14 325 2.67e-14 77.0
Msa0123180 MtrunA17_Chr7g0267501 48.649 74 33 4 242 311 9 81 3.38e-14 75.5
Msa0123180 MtrunA17_Chr1g0199031 40.171 117 52 2 517 632 18 117 4.38e-14 69.7
Msa0123180 MtrunA17_Chr7g0215741 31.792 173 114 2 469 638 588 759 5.22e-14 75.9
Msa0123180 MtrunA17_Chr7g0215741 26.102 295 163 7 476 716 464 757 2.08e-13 73.9
Msa0123180 MtrunA17_Chr1g0177301 45.833 72 37 2 242 311 7 78 8.29e-14 73.9
Msa0123180 MtrunA17_Chr1g0152291 39.080 87 53 0 242 328 46 132 2.02e-13 73.2
Msa0123180 MtrunA17_Chr4g0025501 43.243 74 39 2 241 311 6 79 2.84e-13 72.4
Msa0123180 MtrunA17_Chr7g0247831 35.514 107 65 3 205 309 790 894 3.18e-13 73.6
Msa0123180 MtrunA17_Chr8g0353271 25.694 288 195 7 440 709 8 294 3.85e-13 71.2
Msa0123180 MtrunA17_Chr1g0202971 45.455 66 36 0 242 307 649 714 4.79e-13 72.8
Msa0123180 MtrunA17_Chr8g0390311 38.679 106 59 4 211 311 362 466 1.99e-12 71.2
Msa0123180 MtrunA17_Chr3g0124431 44.000 100 55 1 622 720 515 614 2.88e-12 70.9
Msa0123180 MtrunA17_Chr1g0188041 21.546 608 416 19 11 577 13 600 3.22e-12 70.5
Msa0123180 MtrunA17_Chr1g0205751 27.509 269 178 6 399 650 143 411 4.44e-12 69.7
Msa0123180 MtrunA17_Chr3g0084371 33.333 132 88 0 480 611 297 428 4.73e-12 69.7
Msa0123180 MtrunA17_Chr1g0159781 28.340 247 160 7 485 722 476 714 3.25e-11 67.4
Msa0123180 MtrunA17_Chr3g0079031 31.148 122 81 3 188 307 675 795 4.85e-11 66.2
Msa0123180 MtrunA17_Chr5g0394261 28.638 213 149 3 436 645 191 403 8.12e-11 65.5
Msa0123180 MtrunA17_Chr2g0328101 40.909 66 39 0 242 307 741 806 8.84e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123180 AT3G54790.3 53.194 767 303 9 7 725 2 760 0.0 722
Msa0123180 AT3G54790.1 53.194 767 303 9 7 725 2 760 0.0 722
Msa0123180 AT3G54790.2 53.056 720 282 9 54 725 13 724 0.0 682
Msa0123180 AT5G67340.1 39.694 718 402 7 14 723 13 707 2.39e-164 491
Msa0123180 AT5G67340.2 39.694 718 402 7 14 723 13 707 2.39e-164 491
Msa0123180 AT2G23140.2 36.759 827 404 14 13 723 3 826 3.47e-145 445
Msa0123180 AT2G23140.4 36.759 827 404 14 13 723 3 826 3.47e-145 445
Msa0123180 AT2G23140.1 36.759 827 404 14 13 723 6 829 3.93e-145 445
Msa0123180 AT2G23140.3 66.084 286 97 0 438 723 352 637 1.17e-122 380
Msa0123180 AT2G23140.5 66.084 286 97 0 438 723 352 637 1.17e-122 380
Msa0123180 AT3G01400.1 50.347 288 141 2 440 725 64 351 1.02e-78 256
Msa0123180 AT4G16490.1 49.474 285 141 2 440 721 185 469 2.90e-72 243
Msa0123180 AT5G58680.1 46.732 306 157 4 414 716 39 341 3.19e-71 236
Msa0123180 AT1G71020.2 45.079 315 156 5 402 713 171 471 9.42e-67 228
Msa0123180 AT1G71020.2 29.563 389 230 9 239 612 93 452 7.60e-36 142
Msa0123180 AT1G71020.2 36.527 167 100 5 558 720 231 395 2.47e-14 76.6
Msa0123180 AT1G71020.1 45.079 315 156 5 402 713 319 619 3.46e-65 228
Msa0123180 AT1G71020.1 29.563 389 230 9 239 612 241 600 7.81e-35 141
Msa0123180 AT1G71020.1 36.527 167 100 5 558 720 379 543 5.07e-14 76.3
Msa0123180 AT3G46510.1 43.854 301 159 4 431 722 342 641 1.02e-64 227
Msa0123180 AT3G46510.1 26.769 650 392 18 35 640 29 638 2.63e-49 184
Msa0123180 AT3G54850.1 48.772 285 145 1 438 721 345 629 3.85e-64 225
Msa0123180 AT3G54850.1 26.380 652 390 16 37 667 35 617 3.59e-46 174
Msa0123180 AT1G23030.1 45.683 278 149 2 438 713 331 608 5.88e-64 224
Msa0123180 AT1G23030.1 30.851 376 222 11 239 586 239 604 2.41e-34 139
Msa0123180 AT2G28830.1 43.116 276 154 3 440 712 285 560 4.64e-62 218
Msa0123180 AT2G28830.1 60.000 70 28 0 242 311 185 254 6.72e-23 103
Msa0123180 AT1G24330.1 32.657 493 268 16 236 716 268 708 5.02e-62 222
Msa0123180 AT1G24330.2 32.657 493 268 16 236 716 268 708 5.02e-62 222
Msa0123180 AT5G42340.1 45.055 273 147 3 439 709 380 651 2.67e-52 192
Msa0123180 AT5G42340.1 27.880 599 373 18 36 612 75 636 6.38e-43 166
Msa0123180 AT1G27910.1 32.129 498 265 14 237 721 274 711 1.95e-49 186
Msa0123180 AT1G29340.1 38.305 295 165 7 440 723 408 696 3.46e-38 152
Msa0123180 AT1G29340.1 27.981 411 241 15 240 608 304 701 2.03e-20 96.7
Msa0123180 AT3G07360.5 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.3 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.9 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.6 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.2 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.8 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.10 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.7 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.4 37.102 283 165 8 441 713 37 316 4.95e-38 144
Msa0123180 AT3G07360.1 37.102 283 165 8 441 713 172 451 3.59e-37 145
Msa0123180 AT3G07360.1 27.829 327 206 9 210 526 39 345 6.78e-25 108
Msa0123180 AT1G67530.2 35.000 280 169 7 448 717 434 710 1.05e-32 135
Msa0123180 AT1G67530.2 59.722 72 29 0 242 313 273 344 2.85e-23 105
Msa0123180 AT1G67530.1 35.000 280 169 7 448 717 434 710 1.05e-32 135
Msa0123180 AT1G67530.1 59.722 72 29 0 242 313 273 344 2.85e-23 105
Msa0123180 AT1G67530.4 35.000 280 169 7 448 717 434 710 1.05e-32 135
Msa0123180 AT1G67530.4 59.722 72 29 0 242 313 273 344 2.85e-23 105
Msa0123180 AT4G12710.1 36.170 282 168 7 443 713 50 330 1.60e-31 127
Msa0123180 AT3G03440.1 30.742 283 186 5 440 714 66 346 1.54e-28 119
Msa0123180 AT5G40140.1 29.749 279 191 3 443 717 233 510 3.98e-28 120
Msa0123180 AT5G62560.1 33.074 257 166 3 462 713 258 513 1.49e-27 118
Msa0123180 AT5G65200.1 30.943 265 171 4 462 715 248 511 8.37e-26 112
Msa0123180 AT4G31890.3 31.365 271 172 8 455 713 160 428 3.92e-25 110
Msa0123180 AT4G31890.2 31.365 271 172 8 455 713 160 428 3.92e-25 110
Msa0123180 AT4G31890.1 31.365 271 172 8 455 713 160 428 3.92e-25 110
Msa0123180 AT3G47820.1 33.688 282 174 6 445 714 208 488 5.55e-24 107
Msa0123180 AT1G67530.3 59.722 72 29 0 242 313 273 344 1.78e-23 105
Msa0123180 AT5G14510.1 34.440 241 145 8 484 714 43 280 1.92e-23 102
Msa0123180 AT5G01830.1 26.633 398 223 10 237 589 270 643 2.63e-23 105
Msa0123180 AT5G01830.1 30.405 296 171 9 436 714 368 645 1.36e-20 97.1
Msa0123180 AT4G21350.1 36.444 225 138 3 465 687 121 342 3.37e-23 102
Msa0123180 AT4G21350.1 47.887 71 36 1 238 307 2 72 8.39e-16 80.5
Msa0123180 AT2G25130.1 30.337 267 169 8 461 713 132 395 5.51e-23 103
Msa0123180 AT5G18320.1 33.696 276 169 7 451 713 173 447 1.09e-22 102
Msa0123180 AT5G18320.1 26.648 364 205 10 213 575 45 347 2.07e-20 95.5
Msa0123180 AT1G49780.1 49.351 77 39 0 238 314 11 87 1.85e-20 95.1
Msa0123180 AT3G19380.1 51.282 78 37 1 238 314 11 88 2.57e-19 91.7
Msa0123180 AT2G35930.1 51.389 72 34 1 241 311 12 83 2.17e-18 88.6
Msa0123180 AT1G66160.1 50.000 70 35 0 239 308 31 100 2.30e-18 89.0
Msa0123180 AT5G37490.1 44.872 78 43 0 236 313 26 103 9.65e-18 87.0
Msa0123180 AT3G52450.1 50.000 72 35 1 241 311 7 78 1.11e-17 86.7
Msa0123180 AT1G10560.1 25.797 345 210 12 247 573 294 610 1.62e-17 87.4
Msa0123180 AT1G10560.1 29.352 293 188 8 443 720 393 681 2.40e-17 87.0
Msa0123180 AT1G60190.1 26.549 339 219 11 245 573 282 600 1.70e-17 87.4
Msa0123180 AT1G60190.1 28.387 310 198 10 432 724 372 674 1.87e-16 84.0
Msa0123180 AT1G08315.1 26.117 291 193 7 440 709 9 298 2.41e-17 84.3
Msa0123180 AT5G18340.1 35.507 138 82 3 184 317 15 149 6.41e-17 84.7
Msa0123180 AT5G64660.1 46.377 69 37 0 239 307 8 76 1.91e-16 82.8
Msa0123180 AT5G09800.1 41.975 81 45 1 240 320 10 88 5.77e-16 81.3
Msa0123180 AT3G49810.1 26.525 377 195 12 241 548 64 427 8.55e-16 80.9
Msa0123180 AT3G18710.1 42.254 71 41 0 239 309 10 80 1.61e-15 80.1
Msa0123180 AT5G65920.1 25.758 330 198 8 241 561 60 351 2.04e-15 79.7
Msa0123180 AT5G65920.2 25.758 330 198 8 241 561 60 351 2.04e-15 79.7
Msa0123180 AT4G36550.1 42.667 75 43 0 240 314 218 292 2.33e-15 80.5
Msa0123180 AT5G18330.1 36.697 109 67 2 212 320 37 143 2.56e-15 79.7
Msa0123180 AT2G44900.1 27.797 295 158 8 476 716 475 768 2.93e-15 80.5
Msa0123180 AT2G44900.1 31.792 173 114 2 469 638 599 770 1.11e-13 75.5
Msa0123180 AT2G44900.1 31.250 192 119 3 480 659 390 580 5.59e-12 70.1
Msa0123180 AT2G44900.2 27.797 295 158 8 476 716 475 768 2.93e-15 80.5
Msa0123180 AT2G44900.2 31.792 173 114 2 469 638 599 770 1.11e-13 75.5
Msa0123180 AT2G44900.2 31.250 192 119 3 480 659 390 580 5.59e-12 70.1
Msa0123180 AT1G01660.1 40.476 84 42 1 237 312 485 568 3.17e-15 79.7
Msa0123180 AT1G01660.2 40.476 84 42 1 237 312 486 569 3.23e-15 79.7
Msa0123180 AT3G11840.1 47.368 76 38 2 239 313 8 82 7.22e-15 78.2
Msa0123180 AT1G01680.1 44.776 67 37 0 245 311 237 303 1.65e-14 75.5
Msa0123180 AT2G45920.1 27.746 173 119 3 147 315 229 399 6.94e-14 74.7
Msa0123180 AT3G60350.1 33.333 171 109 3 472 638 592 761 4.50e-13 73.6
Msa0123180 AT3G60350.1 29.268 246 161 5 476 709 466 710 3.70e-12 70.5
Msa0123180 AT3G60350.1 31.955 266 161 8 462 709 362 625 1.35e-11 68.6
Msa0123180 AT3G60350.2 33.333 171 109 3 472 638 592 761 4.50e-13 73.6
Msa0123180 AT3G60350.2 29.268 246 161 5 476 709 466 710 3.70e-12 70.5
Msa0123180 AT3G60350.2 31.955 266 161 8 462 709 362 625 1.35e-11 68.6
Msa0123180 AT3G61390.4 30.114 176 98 6 138 307 188 344 5.45e-13 71.6
Msa0123180 AT3G61390.2 30.114 176 98 6 138 307 263 419 6.89e-13 72.0
Msa0123180 AT2G45910.2 41.429 70 41 0 242 311 764 833 1.04e-12 72.4
Msa0123180 AT2G45910.1 41.429 70 41 0 242 311 764 833 1.04e-12 72.4
Msa0123180 AT5G57035.1 42.424 66 38 0 242 307 709 774 1.65e-12 71.6
Msa0123180 AT2G22125.1 42.000 100 57 1 622 720 513 612 2.43e-11 68.2
Msa0123180 AT1G01670.3 38.571 70 43 0 242 311 211 280 3.79e-11 65.1
Msa0123180 AT1G01670.2 38.571 70 43 0 242 311 295 364 4.30e-11 65.9
Msa0123180 AT1G01670.1 38.571 70 43 0 242 311 295 364 4.30e-11 65.9
Msa0123180 AT5G51270.2 30.168 179 100 8 142 311 642 804 4.46e-11 67.0
Msa0123180 AT5G51270.1 30.168 179 100 8 142 311 642 804 4.46e-11 67.0
Msa0123180 AT1G01830.1 27.551 294 201 7 431 717 203 491 8.05e-11 65.9
Msa0123180 AT1G01830.3 27.551 294 201 7 431 717 203 491 8.05e-11 65.9
Msa0123180 AT1G01830.2 27.551 294 201 7 431 717 203 491 8.05e-11 65.9

Find 197 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTAAATCACTCTATTT+TGG 0.115540 1_3:+50088125 Msa0123180:five_prime_UTR
CATAGCTTTGACAGTATAAT+TGG 0.135710 1_3:-50091133 None:intergenic
AGCTGGAGCTGTCAAATTTC+TGG 0.138706 1_3:+50092049 Msa0123180:CDS
CCTCCTGATTCTATAGATTT+AGG 0.142927 1_3:+50093138 Msa0123180:three_prime_UTR
AAACTTTCACTCATTCTTTA+TGG 0.144726 1_3:+50088148 Msa0123180:five_prime_UTR
AAAATTAATAAAGGGTTATT+AGG 0.224196 1_3:-50087944 None:intergenic
GCCCATGATCAAGCCACTTT+TGG 0.245094 1_3:-50091059 None:intergenic
CCATATTATTGCAGATCTTC+TGG 0.260798 1_3:-50089843 None:intergenic
ACTGCATTTGGGATTGGATT+AGG 0.281089 1_3:-50087810 None:intergenic
CAAATTTCTGGTTGAGTTAA+CGG 0.291686 1_3:+50092061 Msa0123180:CDS
TCACTTCAATTGATTCGTTT+TGG 0.293615 1_3:-50091587 None:intergenic
ACCACCATCTGCATCGGTTT+TGG 0.297018 1_3:+50090186 Msa0123180:CDS
GCCCTCTTGTTTGTAGTTGT+TGG 0.304502 1_3:+50087997 Msa0123180:five_prime_UTR
TGTCTTTAAAACATGGATAA+GGG 0.305967 1_3:-50091820 None:intergenic
CTGTGAATCTTGCTCATCTT+TGG 0.314982 1_3:-50090006 None:intergenic
GTAAGTCTTTGACGAGTCTT+TGG 0.320289 1_3:-50091093 None:intergenic
CTTGCCTCAGGAACACTTAG+AGG 0.322163 1_3:+50091957 Msa0123180:CDS
TTAGTTGAAATTGTTGAATC+AGG 0.322937 1_3:+50092188 Msa0123180:CDS
GCATCCATTGCTTTCTCCAT+TGG 0.325577 1_3:-50091259 None:intergenic
CTGCATTTGGGATTGGATTA+GGG 0.326683 1_3:-50087809 None:intergenic
TATATGTATATGTAGCATTA+TGG 0.327351 1_3:+50087916 Msa0123180:five_prime_UTR
AGACAACAAGGCCTTGATTA+TGG 0.328758 1_3:+50091779 Msa0123180:CDS
TCACTTCTGCTGTGAATATA+TGG 0.333005 1_3:-50091318 None:intergenic
CCAGAAGATCTGCAATAATA+TGG 0.335837 1_3:+50089843 Msa0123180:CDS
AGGGCATAGGTTTCACTGTT+TGG 0.338516 1_3:-50089819 None:intergenic
TATTGAATGAAGACTGCATT+TGG 0.339616 1_3:-50087822 None:intergenic
AAAGCTCCATGAACAATATA+AGG 0.342283 1_3:-50093447 None:intergenic
GAATATAGCAGCGAAATTAA+AGG 0.345847 1_3:-50091696 None:intergenic
CTTTCGTTGTCCTTTATCAT+TGG 0.349699 1_3:+50090978 Msa0123180:CDS
CTGTCTTTAAAACATGGATA+AGG 0.350895 1_3:-50091821 None:intergenic
TAATGCTACATATACATATA+TGG 0.361950 1_3:-50087913 None:intergenic
CCTCTTCTTTCCTTTCTCTC+AGG 0.364453 1_3:+50088022 Msa0123180:five_prime_UTR
GATGCGGGAGGGATAGAAAA+TGG 0.374443 1_3:+50091444 Msa0123180:CDS
TCTTGAGACACTGAAGTTCC+TGG 0.377501 1_3:-50090663 None:intergenic
AATTATGCCTACATAGTTCC+AGG 0.379327 1_3:+50092252 Msa0123180:CDS
TGCAGATGGTGGTGACTCTA+AGG 0.382186 1_3:-50090176 None:intergenic
TGACCGGAAGCCACAATAAC+AGG 0.383755 1_3:-50091015 None:intergenic
GCCAGTACTCGACGATGTTA+TGG 0.384564 1_3:+50089888 Msa0123180:CDS
ATGTAAAGTATGTGAAGAAT+TGG 0.384663 1_3:+50089939 Msa0123180:CDS
AGTAACTCTGAGCATAATAC+TGG 0.389481 1_3:+50091195 Msa0123180:CDS
AACATGAGTTCCAATGATAA+AGG 0.394131 1_3:-50090988 None:intergenic
TTTCTGTGTTATGCTTTGTA+AGG 0.397583 1_3:-50091638 None:intergenic
GATCCTGTTATTGTGGCTTC+CGG 0.400104 1_3:+50091012 Msa0123180:CDS
TTTATGGTTTGAAGTTGATC+AGG 0.406084 1_3:+50088164 Msa0123180:five_prime_UTR
TTAGTTGCATTATCTCAATC+TGG 0.415822 1_3:+50092314 Msa0123180:CDS
AATGCATTTGAAGAACAAAA+AGG 0.418610 1_3:+50091219 Msa0123180:CDS
ACTAGAAATTGAACTTGAAA+AGG 0.419589 1_3:-50091343 None:intergenic
AGTTTCACAACCATGCATAT+AGG 0.419904 1_3:+50088212 Msa0123180:exon
ACTGAACTGACTTGGGAGTT+GGG 0.420206 1_3:-50093370 None:intergenic
AATCCTAAATCTATAGAATC+AGG 0.421902 1_3:-50093141 None:intergenic
AGATCTGCAATAATATGGTT+GGG 0.424411 1_3:+50089848 Msa0123180:CDS
ACAGAAAACCGTATCATTGT+AGG 0.429397 1_3:+50091654 Msa0123180:CDS
TTCTATCCCTCCCGCATCTA+CGG 0.431968 1_3:-50091439 None:intergenic
ATCATGAAGATAGAAAGTTT+TGG 0.433620 1_3:+50093064 Msa0123180:exon
ATCCAAAAGTGGCTTGATCA+TGG 0.434849 1_3:+50091057 Msa0123180:CDS
CATTTCCTGTCTTTAAAACA+TGG 0.435893 1_3:-50091827 None:intergenic
TCTACTTTGGTGGCTGTACT+CGG 0.438981 1_3:+50093263 Msa0123180:three_prime_UTR
ATTGAATGAAGACTGCATTT+GGG 0.447488 1_3:-50087821 None:intergenic
AGAGACTATTGCTGTGGAAA+AGG 0.448997 1_3:+50090813 Msa0123180:CDS
CACTGAACTGACTTGGGAGT+TGG 0.454317 1_3:-50093371 None:intergenic
CTACTAGAGCATAACTCATA+TGG 0.456974 1_3:+50093344 Msa0123180:three_prime_UTR
TACATGTATCATTCTGGAAA+CGG 0.460305 1_3:+50093198 Msa0123180:three_prime_UTR
TTTATCATTGGAACTCATGT+TGG 0.461750 1_3:+50090990 Msa0123180:CDS
TTCCCTCCGCAATTGTCGAC+AGG 0.465435 1_3:-50092130 None:intergenic
AAAGATGTATCAAGGGTGTC+TGG 0.466382 1_3:+50091390 Msa0123180:CDS
ATGAAGACTGCATTTGGGAT+TGG 0.467960 1_3:-50087816 None:intergenic
CGCCAATGCTTTAATTGCAC+CGG 0.469718 1_3:-50091928 None:intergenic
AGATTGAGATAATGCAACTA+AGG 0.474539 1_3:-50092312 None:intergenic
TTCACATCTTGTTTCAAACT+CGG 0.478265 1_3:+50091512 Msa0123180:CDS
ATTAATAAAGGGTTATTAGG+TGG 0.478715 1_3:-50087941 None:intergenic
CCGTTTCAAAAGATGTATCA+AGG 0.481355 1_3:+50091382 Msa0123180:CDS
TCCATAACATCGTCGAGTAC+TGG 0.483296 1_3:-50089889 None:intergenic
TTGTCAACCATTCCATTGGC+AGG 0.484404 1_3:-50092086 None:intergenic
TGCAGTCTTCATTCAATACT+AGG 0.484790 1_3:+50087827 Msa0123180:five_prime_UTR
TTGGCGGAACTTCTTGCCTC+AGG 0.485196 1_3:+50091945 Msa0123180:CDS
TCTGTAAAAGCCTGAGAGAA+AGG 0.486938 1_3:-50088032 None:intergenic
CTGAACTGACTTGGGAGTTG+GGG 0.490901 1_3:-50093369 None:intergenic
AGCAATGGTCTATATAGAAA+AGG 0.491210 1_3:+50090693 Msa0123180:CDS
ATAGCTTTGACAGTATAATT+GGG 0.493767 1_3:-50091132 None:intergenic
GAGTACTTTGCAGTCAAAAG+TGG 0.495169 1_3:+50090937 Msa0123180:CDS
TTCCGGTGCAATTAAAGCAT+TGG 0.495853 1_3:+50091926 Msa0123180:CDS
CAGATCTTCTGGAAGGGCAT+AGG 0.495873 1_3:-50089832 None:intergenic
CGGGAAGCAGCTACCACAAA+GGG 0.497277 1_3:+50093038 Msa0123180:CDS
TCTATTCAGCCTCTCTGTAA+TGG 0.503208 1_3:+50091878 Msa0123180:CDS
TCACATCTTGTTTCAAACTC+GGG 0.504312 1_3:+50091513 Msa0123180:CDS
AAGATCTGCAATAATATGGT+TGG 0.507887 1_3:+50089847 Msa0123180:CDS
TTAATAAAGGGTTATTAGGT+GGG 0.507905 1_3:-50087940 None:intergenic
CGGTGCAATTAAAGCATTGG+CGG 0.507977 1_3:+50091929 Msa0123180:CDS
TCAACAATTTCAACTAATGA+CGG 0.515732 1_3:-50092182 None:intergenic
TTGTCTCTCGTATGTTTGAC+CGG 0.516665 1_3:-50091031 None:intergenic
TTTCACTTAAACAGGTCAAA+CGG 0.517237 1_3:+50089735 Msa0123180:intron
AGGAACACTTAGAGGAAAGA+AGG 0.519961 1_3:+50091965 Msa0123180:CDS
TGTCGACAGGTTTGACAGAA+GGG 0.521309 1_3:-50092117 None:intergenic
TACTCCAAGAGCAAAGGAAA+AGG 0.525058 1_3:+50092337 Msa0123180:CDS
CAACAATTTCAACTAATGAC+GGG 0.525187 1_3:-50092181 None:intergenic
CAAGGCCTTGATTATGGAAG+CGG 0.526592 1_3:+50091785 Msa0123180:CDS
TTTCGCTGCTATATTCAGAC+GGG 0.527949 1_3:+50091703 Msa0123180:CDS
TCCAAAAGTGGCTTGATCAT+GGG 0.528426 1_3:+50091058 Msa0123180:CDS
AGCCTTGTCAACCATTCCAT+TGG 0.531081 1_3:-50092090 None:intergenic
AAGGCCTTGATTATGGAAGC+GGG 0.532774 1_3:+50091786 Msa0123180:CDS
ATATATGCACTGAACTGACT+TGG 0.533823 1_3:-50093378 None:intergenic
GATAAAGGACAACGAAAGTA+CGG 0.534573 1_3:-50090973 None:intergenic
AGAATATAGAAATAGAAAAG+TGG 0.536189 1_3:+50091283 Msa0123180:CDS
CATGTTGGATCCTGTTATTG+TGG 0.537393 1_3:+50091005 Msa0123180:CDS
TAAAACCAGTGTACAAAACC+TGG 0.538109 1_3:-50092270 None:intergenic
ATGAAATGAAGTGAAGAATG+AGG 0.538292 1_3:+50088074 Msa0123180:five_prime_UTR
ATCATTATAGAAAATTACTT+AGG 0.540893 1_3:-50093112 None:intergenic
CGTATCATTGTAGGGCAGTG+TGG 0.543384 1_3:+50091663 Msa0123180:CDS
ACATAAAATGAAAAGCGACT+TGG 0.550069 1_3:+50090855 Msa0123180:CDS
GTATCATTGTAGGGCAGTGT+GGG 0.550685 1_3:+50091664 Msa0123180:CDS
AGCTGCCGCAGAATTCTCCT+TGG 0.550863 1_3:-50091856 None:intergenic
CTCAGAGTTACTAGAACGGT+TGG 0.551734 1_3:-50091184 None:intergenic
ACCTTGCAAGGAAAATCTAA+AGG 0.552613 1_3:+50090744 Msa0123180:CDS
GTCTTTAAAACATGGATAAG+GGG 0.554803 1_3:-50091819 None:intergenic
TTGTCGACAGGTTTGACAGA+AGG 0.555252 1_3:-50092118 None:intergenic
AAGGTGTCGTCCGTAGATGC+GGG 0.555598 1_3:+50091429 Msa0123180:CDS
CACACTGCCCTACAATGATA+CGG 0.556153 1_3:-50091662 None:intergenic
ATTTCGCTGCTATATTCAGA+CGG 0.556954 1_3:+50091702 Msa0123180:CDS
AGATGATACTGAACCTTGCA+AGG 0.558284 1_3:+50090732 Msa0123180:CDS
AAAGCTCGAATAGTTCAAGC+TGG 0.558721 1_3:+50092032 Msa0123180:CDS
TACAAAACCTGGAACTATGT+AGG 0.558754 1_3:-50092259 None:intergenic
AGAGACAATCCATCCAAAAG+TGG 0.560254 1_3:+50091046 Msa0123180:CDS
TTGGTGGCTGTACTCGGAGG+AGG 0.562505 1_3:+50093269 Msa0123180:three_prime_UTR
AAATTACTTAGGCTAGGAGA+AGG 0.563697 1_3:-50093101 None:intergenic
TGTTGAATCAGGTTCTCAGA+GGG 0.564013 1_3:+50092199 Msa0123180:CDS
CTTTCCTCTAAGTGTTCCTG+AGG 0.564605 1_3:-50091961 None:intergenic
GAATATAGAAATAGAAAAGT+GGG 0.566712 1_3:+50091284 Msa0123180:CDS
GAAGGTGTCGTCCGTAGATG+CGG 0.567749 1_3:+50091428 Msa0123180:CDS
AACGGATCCTGCCAATGGAA+TGG 0.569507 1_3:+50092079 Msa0123180:CDS
TAGTTTCTGAAGCTTTAGCT+TGG 0.570792 1_3:+50093297 Msa0123180:three_prime_UTR
TATAGAAAATTACTTAGGCT+AGG 0.570990 1_3:-50093107 None:intergenic
GGCCTTGATTATGGAAGCGG+GGG 0.573918 1_3:+50091788 Msa0123180:CDS
CAGAAAACCGTATCATTGTA+GGG 0.574472 1_3:+50091655 Msa0123180:CDS
GACAGGAAATGATGGTGCCA+AGG 0.574539 1_3:+50091839 Msa0123180:CDS
TATTCTCATGAAATATTGAG+AGG 0.577297 1_3:-50092010 None:intergenic
AAGGAAAGATTGAACGCTGA+AGG 0.579752 1_3:+50090832 Msa0123180:CDS
TATATGCACTGAACTGACTT+GGG 0.580003 1_3:-50093377 None:intergenic
ATGCTTTAATTGCACCGGAA+CGG 0.580585 1_3:-50091923 None:intergenic
AGATCCAATGGAGAAAGCAA+TGG 0.582564 1_3:+50091255 Msa0123180:CDS
CAATACTAGGCATCTCATAA+CGG 0.583764 1_3:+50087840 Msa0123180:five_prime_UTR
AGGTTAGAAATTGCAAGAGA+AGG 0.585061 1_3:+50092152 Msa0123180:CDS
GATCTGCAATAATATGGTTG+GGG 0.585533 1_3:+50089849 Msa0123180:CDS
GTCAAACCTGTCGACAATTG+CGG 0.586932 1_3:+50092124 Msa0123180:CDS
ATCTGGTACTCCAAGAGCAA+AGG 0.587517 1_3:+50092331 Msa0123180:CDS
ATTATTGCAGATCTTCTGGA+AGG 0.589284 1_3:-50089839 None:intergenic
AGAGTCACCACCATCTGCAT+CGG 0.589320 1_3:+50090180 Msa0123180:CDS
AGCCTCTCTGTAATGGAGAA+CGG 0.590485 1_3:+50091885 Msa0123180:CDS
ACTTAAATTGACATCAACTC+AGG 0.593345 1_3:+50090780 Msa0123180:CDS
AATTAAAAGAATGAAATGAA+AGG 0.593597 1_3:-50093172 None:intergenic
GAGTTAACGGATCCTGCCAA+TGG 0.598051 1_3:+50092074 Msa0123180:CDS
TTAGAAATTGCAAGAGAAGG+TGG 0.599313 1_3:+50092155 Msa0123180:CDS
GGAACTTCAGTGTCTCAAGA+AGG 0.599469 1_3:+50090666 Msa0123180:CDS
ATCAGGTTCTCAGAGGGGAA+AGG 0.606091 1_3:+50092205 Msa0123180:CDS
AATTACTTAGGCTAGGAGAA+GGG 0.608524 1_3:-50093100 None:intergenic
CTGAGAGAAAGGAAAGAAGA+GGG 0.609919 1_3:-50088021 None:intergenic
TGTCGACAATTGCGGAGGGA+AGG 0.610973 1_3:+50092132 Msa0123180:CDS
GATATCTCTTTCAGATCCAA+TGG 0.611138 1_3:+50091243 Msa0123180:CDS
GATTGAGATAATGCAACTAA+GGG 0.611793 1_3:-50092311 None:intergenic
CTTGAAAGAGACTATTGCTG+TGG 0.614279 1_3:+50090807 Msa0123180:CDS
TTATTGCAGATCTTCTGGAA+GGG 0.616400 1_3:-50089838 None:intergenic
TCAAAGCTATGATAGCAACT+TGG 0.617844 1_3:+50091145 Msa0123180:CDS
ATCAATTAATGAAGACAACA+AGG 0.618009 1_3:+50091767 Msa0123180:CDS
CCTGAGAGAAAGGAAAGAAG+AGG 0.618981 1_3:-50088022 None:intergenic
CGTTTCAAAAGATGTATCAA+GGG 0.621464 1_3:+50091383 Msa0123180:CDS
ATATGCGTGTTAACGAAGCA+AGG 0.624151 1_3:+50089962 Msa0123180:CDS
GTCCAACAACTACAAACAAG+AGG 0.624311 1_3:-50087999 None:intergenic
TTAGCCAAAACCGATGCAGA+TGG 0.627265 1_3:-50090190 None:intergenic
TGAACTGACTTGGGAGTTGG+GGG 0.627771 1_3:-50093368 None:intergenic
CAATTTATTGACATGAGACG+AGG 0.630618 1_3:-50091553 None:intergenic
TATGATAGCAACTTGGTGTG+AGG 0.634224 1_3:+50091152 Msa0123180:CDS
GTGTCGTCCGTAGATGCGGG+AGG 0.637385 1_3:+50091432 Msa0123180:CDS
GCCAAAACCGATGCAGATGG+TGG 0.638983 1_3:-50090187 None:intergenic
AAACCTGTCGACAATTGCGG+AGG 0.639239 1_3:+50092127 Msa0123180:CDS
TGAGATAATGCAACTAAGGG+AGG 0.643063 1_3:-50092308 None:intergenic
TATGCGTGTTAACGAAGCAA+GGG 0.643177 1_3:+50089963 Msa0123180:CDS
TCTCAAGAAGGAAACAGCAA+TGG 0.643563 1_3:+50090678 Msa0123180:CDS
AGGCCTTGATTATGGAAGCG+GGG 0.646219 1_3:+50091787 Msa0123180:CDS
AACCTGTCGACAATTGCGGA+GGG 0.649763 1_3:+50092128 Msa0123180:CDS
TATCATTGTAGGGCAGTGTG+GGG 0.649782 1_3:+50091665 Msa0123180:CDS
ACGGGAAGCAGCTACCACAA+AGG 0.652443 1_3:+50093037 Msa0123180:CDS
CCTAAATCTATAGAATCAGG+AGG 0.654143 1_3:-50093138 None:intergenic
TTTATTGACATGAGACGAGG+TGG 0.656546 1_3:-50091550 None:intergenic
TACCGTTCTCCATTACAGAG+AGG 0.659126 1_3:-50091887 None:intergenic
TGTCGTCCGTAGATGCGGGA+GGG 0.663917 1_3:+50091433 Msa0123180:CDS
TCCAACAACTACAAACAAGA+GGG 0.664710 1_3:-50087998 None:intergenic
TTGTTGAATCAGGTTCTCAG+AGG 0.664892 1_3:+50092198 Msa0123180:CDS
AAGGACAACGAAAGTACGGA+GGG 0.665746 1_3:-50090969 None:intergenic
GTTGAATCAGGTTCTCAGAG+GGG 0.666113 1_3:+50092200 Msa0123180:CDS
TGCCAATGGAATGGTTGACA+AGG 0.668863 1_3:+50092088 Msa0123180:CDS
CTACTGCTGCAGAAGAACTG+AGG 0.670399 1_3:+50091613 Msa0123180:CDS
ACTTTGGTGGCTGTACTCGG+AGG 0.672026 1_3:+50093266 Msa0123180:three_prime_UTR
GAGGTTATATAAAGCAGTAG+CGG 0.675036 1_3:-50091991 None:intergenic
TATGCTCAGAGTTACTAGAA+CGG 0.677978 1_3:-50091188 None:intergenic
AAAGGACAACGAAAGTACGG+AGG 0.702184 1_3:-50090970 None:intergenic
TGGTGCCAAGGAGAATTCTG+CGG 0.713773 1_3:+50091851 Msa0123180:CDS
TCACATAATCACGTAAGACG+CGG 0.714629 1_3:-50090906 None:intergenic
TGGTAAGTATCAAATTACGA+AGG 0.715980 1_3:+50091410 Msa0123180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAAATTAATAAA+GGG - chr1_3:50087955-50087974 None:intergenic 0.0%
!! AAAATTAATAAAGGGTTATT+AGG - chr1_3:50087947-50087966 None:intergenic 15.0%
!!! TTTTGTTTTTGCTTAAAAAA+TGG + chr1_3:50088273-50088292 Msa0123180:intron 15.0%
!! TAAATCAAAAACAAAAAACA+TGG - chr1_3:50088324-50088343 None:intergenic 15.0%
!!! GTTTTTTGTTTTTGATTTAT+AGG + chr1_3:50088325-50088344 Msa0123180:intron 15.0%
!! AAGTAGTAAAAAAATATTAG+TGG - chr1_3:50088682-50088701 None:intergenic 15.0%
!! GTTATAAAAAATCAAACAAA+GGG - chr1_3:50088858-50088877 None:intergenic 15.0%
!! TTAAAAAATGAGTTTATATG+TGG + chr1_3:50089330-50089349 Msa0123180:intron 15.0%
!! TAAAAAATGAGTTTATATGT+GGG + chr1_3:50089331-50089350 Msa0123180:intron 15.0%
!!! TTACATAAATTTTGATGTAA+AGG - chr1_3:50089925-50089944 None:intergenic 15.0%
!! TTCTTTCTTAAAATATGAAT+TGG - chr1_3:50092709-50092728 None:intergenic 15.0%
!!! ATTTTAAGAAAGAAAAACAA+AGG + chr1_3:50092715-50092734 Msa0123180:intron 15.0%
!!! TTTTAAGAAAGAAAAACAAA+GGG + chr1_3:50092716-50092735 Msa0123180:intron 15.0%
!! ATCATTATAGAAAATTACTT+AGG - chr1_3:50093115-50093134 None:intergenic 15.0%
!! AATTAAAAGAATGAAATGAA+AGG - chr1_3:50093175-50093194 None:intergenic 15.0%
!! TAATGCTACATATACATATA+TGG - chr1_3:50087916-50087935 None:intergenic 20.0%
!! TATATGTATATGTAGCATTA+TGG + chr1_3:50087916-50087935 Msa0123180:five_prime_UTR 20.0%
!!! ATTCTTAAATCACTCTATTT+TGG + chr1_3:50088125-50088144 Msa0123180:five_prime_UTR 20.0%
!!! TTTTGTTTTTGATTTATAGG+TGG + chr1_3:50088328-50088347 Msa0123180:intron 20.0%
!!! CAGATTTTAAGTATAAATGA+TGG - chr1_3:50088370-50088389 None:intergenic 20.0%
!!! TTAAAATCTGAACTTTTTGT+TGG + chr1_3:50088380-50088399 Msa0123180:intron 20.0%
!!! TAAAATCTGAACTTTTTGTT+GGG + chr1_3:50088381-50088400 Msa0123180:intron 20.0%
!!! AACTTATACATTTTCCATTT+TGG + chr1_3:50088529-50088548 Msa0123180:intron 20.0%
!!! TTGAATTATGTTGATTTAAG+TGG + chr1_3:50088641-50088660 Msa0123180:intron 20.0%
!!! TTTGTATATGTCATTTTCAT+TGG + chr1_3:50088744-50088763 Msa0123180:intron 20.0%
!!! TTGTATATGTCATTTTCATT+GGG + chr1_3:50088745-50088764 Msa0123180:intron 20.0%
!! GGTTATAAAAAATCAAACAA+AGG - chr1_3:50088859-50088878 None:intergenic 20.0%
!! TCTTAATATGTGTTTATAAG+TGG + chr1_3:50088922-50088941 Msa0123180:intron 20.0%
!! CTTAATATGTGTTTATAAGT+GGG + chr1_3:50088923-50088942 Msa0123180:intron 20.0%
!! CAACTTGTATTTAAATACTA+TGG - chr1_3:50090333-50090352 None:intergenic 20.0%
!!! ATATCTTTATTCTTTTGAAC+TGG + chr1_3:50090477-50090496 Msa0123180:intron 20.0%
!!! TATCTTTATTCTTTTGAACT+GGG + chr1_3:50090478-50090497 Msa0123180:intron 20.0%
!!! ACTTTTCTATTTCTATATTC+TGG - chr1_3:50091284-50091303 None:intergenic 20.0%
!! AGAATATAGAAATAGAAAAG+TGG + chr1_3:50091283-50091302 Msa0123180:CDS 20.0%
!! GAATATAGAAATAGAAAAGT+GGG + chr1_3:50091284-50091303 Msa0123180:CDS 20.0%
!!! ATTTTTTACATGTATCATTC+TGG + chr1_3:50093192-50093211 Msa0123180:three_prime_UTR 20.0%
!!! CTTTAATTTTCTTTCTACTT+TGG + chr1_3:50093250-50093269 Msa0123180:three_prime_UTR 20.0%
! TTAATAAAGGGTTATTAGGT+GGG - chr1_3:50087943-50087962 None:intergenic 25.0%
! ATTAATAAAGGGTTATTAGG+TGG - chr1_3:50087944-50087963 None:intergenic 25.0%
! AAACTTTCACTCATTCTTTA+TGG + chr1_3:50088148-50088167 Msa0123180:five_prime_UTR 25.0%
!! AAATGATGGAAGAAAATGAA+TGG - chr1_3:50088356-50088375 None:intergenic 25.0%
!!! GTTGATTGATATTGATTTGT+TGG + chr1_3:50088495-50088514 Msa0123180:intron 25.0%
!!! TTGATATTGATTTGTTGGAT+TGG + chr1_3:50088500-50088519 Msa0123180:intron 25.0%
!!! ACATTTTCCATTTTGGTTTT+TGG + chr1_3:50088536-50088555 Msa0123180:intron 25.0%
!!! CATTTTCCATTTTGGTTTTT+GGG + chr1_3:50088537-50088556 Msa0123180:intron 25.0%
!!! ATTTTCCATTTTGGTTTTTG+GGG + chr1_3:50088538-50088557 Msa0123180:intron 25.0%
!!! TAGGAATGTTTTGTTTATTG+TGG + chr1_3:50088604-50088623 Msa0123180:intron 25.0%
!!! TGTATATGTCATTTTCATTG+GGG + chr1_3:50088746-50088765 Msa0123180:intron 25.0%
! ATAAAAAATCAAACAAAGGG+TGG - chr1_3:50088855-50088874 None:intergenic 25.0%
! AAAACCAGATTGTAAAGTAA+GGG - chr1_3:50088955-50088974 None:intergenic 25.0%
! TAAAACCAGATTGTAAAGTA+AGG - chr1_3:50088956-50088975 None:intergenic 25.0%
!!! TACTTTACAATCTGGTTTTA+TGG + chr1_3:50088956-50088975 Msa0123180:intron 25.0%
!!! ACTTTACAATCTGGTTTTAT+GGG + chr1_3:50088957-50088976 Msa0123180:intron 25.0%
! TATCATCTTAGAATTTGCAT+TGG - chr1_3:50089088-50089107 None:intergenic 25.0%
! GCAAGATGTTCTTAAAATTT+GGG - chr1_3:50089240-50089259 None:intergenic 25.0%
! AGCAAGATGTTCTTAAAATT+TGG - chr1_3:50089241-50089260 None:intergenic 25.0%
! ATAAGTTCTTAGAATAGGTT+GGG - chr1_3:50089400-50089419 None:intergenic 25.0%
! AATAAGTTCTTAGAATAGGT+TGG - chr1_3:50089401-50089420 None:intergenic 25.0%
! GAAGAATAAGTTCTTAGAAT+AGG - chr1_3:50089405-50089424 None:intergenic 25.0%
! ATTATAAACCAAAGGTAGAT+AGG - chr1_3:50089444-50089463 None:intergenic 25.0%
! CCAATAGTATTATAAACCAA+AGG - chr1_3:50089452-50089471 None:intergenic 25.0%
!! CCTTTGGTTTATAATACTAT+TGG + chr1_3:50089449-50089468 Msa0123180:intron 25.0%
!! ATAATGATTTTGCCATGAAT+TGG + chr1_3:50089610-50089629 Msa0123180:intron 25.0%
! AAACAGTATATGATTTACTG+GGG - chr1_3:50089679-50089698 None:intergenic 25.0%
! GAAACAGTATATGATTTACT+GGG - chr1_3:50089680-50089699 None:intergenic 25.0%
! ATGTAAAGTATGTGAAGAAT+TGG + chr1_3:50089939-50089958 Msa0123180:CDS 25.0%
! AAGGGATTTCATTGAAAAAT+GGG + chr1_3:50089981-50090000 Msa0123180:CDS 25.0%
! AATTGCATCCTGATAAAATT+AGG + chr1_3:50090544-50090563 Msa0123180:intron 25.0%
!! TTTATGCTCCTAATTTTATC+AGG - chr1_3:50090555-50090574 None:intergenic 25.0%
!! ATTAGGAGCATAAAGTATTA+TGG + chr1_3:50090561-50090580 Msa0123180:intron 25.0%
!!! ATAGCTTTGACAGTATAATT+GGG - chr1_3:50091135-50091154 None:intergenic 25.0%
! AATGCATTTGAAGAACAAAA+AGG + chr1_3:50091219-50091238 Msa0123180:CDS 25.0%
! ACTAGAAATTGAACTTGAAA+AGG - chr1_3:50091346-50091365 None:intergenic 25.0%
! ATCAATTAATGAAGACAACA+AGG + chr1_3:50091767-50091786 Msa0123180:CDS 25.0%
!!! TGTCTTTAAAACATGGATAA+GGG - chr1_3:50091823-50091842 None:intergenic 25.0%
! TATTCTCATGAAATATTGAG+AGG - chr1_3:50092013-50092032 None:intergenic 25.0%
! TCAACAATTTCAACTAATGA+CGG - chr1_3:50092185-50092204 None:intergenic 25.0%
! TTAGTTGAAATTGTTGAATC+AGG + chr1_3:50092188-50092207 Msa0123180:CDS 25.0%
! AAGTAAAGGAATGAATTGTT+AGG - chr1_3:50092813-50092832 None:intergenic 25.0%
!! ATCATGAAGATAGAAAGTTT+TGG + chr1_3:50093064-50093083 Msa0123180:exon 25.0%
! TATAGAAAATTACTTAGGCT+AGG - chr1_3:50093110-50093129 None:intergenic 25.0%
! AATCCTAAATCTATAGAATC+AGG - chr1_3:50093144-50093163 None:intergenic 25.0%
!! TAATTTTCTTTCTACTTTGG+TGG + chr1_3:50093253-50093272 Msa0123180:three_prime_UTR 25.0%
ATTGAATGAAGACTGCATTT+GGG - chr1_3:50087824-50087843 None:intergenic 30.0%
TATTGAATGAAGACTGCATT+TGG - chr1_3:50087825-50087844 None:intergenic 30.0%
ATGAAATGAAGTGAAGAATG+AGG + chr1_3:50088074-50088093 Msa0123180:five_prime_UTR 30.0%
! TTTATGGTTTGAAGTTGATC+AGG + chr1_3:50088164-50088183 Msa0123180:five_prime_UTR 30.0%
! ATTTTGCATACCTATATGCA+TGG - chr1_3:50088225-50088244 None:intergenic 30.0%
!!! ATGAAAGCTAGTTTTCAAGT+TGG + chr1_3:50088458-50088477 Msa0123180:intron 30.0%
AAGGGATGTTGAATTTGATT+AGG + chr1_3:50088585-50088604 Msa0123180:intron 30.0%
! ACAGAAGAAGAAAGAACTTT+TGG - chr1_3:50088710-50088729 None:intergenic 30.0%
AAAAGTTCTTTCTTCTTCTG+TGG + chr1_3:50088709-50088728 Msa0123180:intron 30.0%
ATATGTCAACACAAAAGGTA+AGG + chr1_3:50088777-50088796 Msa0123180:intron 30.0%
CTAGCACAAAATTACAAAAG+AGG - chr1_3:50088880-50088899 None:intergenic 30.0%
AATATGTGTTTATAAGTGGG+AGG + chr1_3:50088926-50088945 Msa0123180:intron 30.0%
!!! CTTTACAATCTGGTTTTATG+GGG + chr1_3:50088958-50088977 Msa0123180:intron 30.0%
!!! TTTGGATTTTAGAATCCGAA+CGG - chr1_3:50088992-50089011 None:intergenic 30.0%
!! TTCTAAAATCCAAACTGCAT+AGG + chr1_3:50088998-50089017 Msa0123180:intron 30.0%
! TCTAAAATCCAAACTGCATA+GGG + chr1_3:50088999-50089018 Msa0123180:intron 30.0%
TGGTTTAATAGAGTTGAGTA+AGG + chr1_3:50089061-50089080 Msa0123180:intron 30.0%
AGAGCTATCCAATATCTATT+AGG + chr1_3:50089110-50089129 Msa0123180:intron 30.0%
AAAATGAGTTTATATGTGGG+AGG + chr1_3:50089334-50089353 Msa0123180:intron 30.0%
!!! GTACATTTCCTTTTTAAGTG+CGG + chr1_3:50089494-50089513 Msa0123180:intron 30.0%
TTTGAAAACCGCACTTAAAA+AGG - chr1_3:50089505-50089524 None:intergenic 30.0%
TTCAATGTAACTCCAATTCA+TGG - chr1_3:50089625-50089644 None:intergenic 30.0%
CGAAACAGTATATGATTTAC+TGG - chr1_3:50089681-50089700 None:intergenic 30.0%
TTTCACTTAAACAGGTCAAA+CGG + chr1_3:50089735-50089754 Msa0123180:intron 30.0%
AAGATCTGCAATAATATGGT+TGG + chr1_3:50089847-50089866 Msa0123180:CDS 30.0%
AGATCTGCAATAATATGGTT+GGG + chr1_3:50089848-50089867 Msa0123180:CDS 30.0%
CAAGGGATTTCATTGAAAAA+TGG + chr1_3:50089980-50089999 Msa0123180:CDS 30.0%
AGGGATTTCATTGAAAAATG+GGG + chr1_3:50089982-50090001 Msa0123180:CDS 30.0%
AGTCAAACTAAGTATTCTGT+TGG + chr1_3:50090062-50090081 Msa0123180:intron 30.0%
! TTGGAATCATTCCTATTTTC+AGG + chr1_3:50090081-50090100 Msa0123180:intron 30.0%
ACTTTGTAGAACCTGAAAAT+AGG - chr1_3:50090095-50090114 None:intergenic 30.0%
!!! TATTTTCAGGTTCTACAAAG+TGG + chr1_3:50090094-50090113 Msa0123180:intron 30.0%
TAGGGGTAATTGTTGTAATA+TGG + chr1_3:50090306-50090325 Msa0123180:intron 30.0%
! TTATTCTTTTGAACTGGGAT+TGG + chr1_3:50090483-50090502 Msa0123180:intron 30.0%
AGCAATGGTCTATATAGAAA+AGG + chr1_3:50090693-50090712 Msa0123180:CDS 30.0%
ACTTAAATTGACATCAACTC+AGG + chr1_3:50090780-50090799 Msa0123180:CDS 30.0%
ACATAAAATGAAAAGCGACT+TGG + chr1_3:50090855-50090874 Msa0123180:CDS 30.0%
AACATGAGTTCCAATGATAA+AGG - chr1_3:50090991-50091010 None:intergenic 30.0%
TTTATCATTGGAACTCATGT+TGG + chr1_3:50090990-50091009 Msa0123180:CDS 30.0%
!! CATAGCTTTGACAGTATAAT+TGG - chr1_3:50091136-50091155 None:intergenic 30.0%
!! CCTTGATACATCTTTTGAAA+CGG - chr1_3:50091385-50091404 None:intergenic 30.0%
CGTTTCAAAAGATGTATCAA+GGG + chr1_3:50091383-50091402 Msa0123180:CDS 30.0%
TGGTAAGTATCAAATTACGA+AGG + chr1_3:50091410-50091429 Msa0123180:CDS 30.0%
! TTCACATCTTGTTTCAAACT+CGG + chr1_3:50091512-50091531 Msa0123180:CDS 30.0%
!!! TCACTTCAATTGATTCGTTT+TGG - chr1_3:50091590-50091609 None:intergenic 30.0%
TTTCTGTGTTATGCTTTGTA+AGG - chr1_3:50091641-50091660 None:intergenic 30.0%
GAATATAGCAGCGAAATTAA+AGG - chr1_3:50091699-50091718 None:intergenic 30.0%
!! GTCTTTAAAACATGGATAAG+GGG - chr1_3:50091822-50091841 None:intergenic 30.0%
!! CTGTCTTTAAAACATGGATA+AGG - chr1_3:50091824-50091843 None:intergenic 30.0%
!!! CTTATCCATGTTTTAAAGAC+AGG + chr1_3:50091822-50091841 Msa0123180:CDS 30.0%
!! CATTTCCTGTCTTTAAAACA+TGG - chr1_3:50091830-50091849 None:intergenic 30.0%
!!! GTTTTAAAGACAGGAAATGA+TGG + chr1_3:50091831-50091850 Msa0123180:CDS 30.0%
!! CAAATTTCTGGTTGAGTTAA+CGG + chr1_3:50092061-50092080 Msa0123180:CDS 30.0%
CAACAATTTCAACTAATGAC+GGG - chr1_3:50092184-50092203 None:intergenic 30.0%
GATTGAGATAATGCAACTAA+GGG - chr1_3:50092314-50092333 None:intergenic 30.0%
AGATTGAGATAATGCAACTA+AGG - chr1_3:50092315-50092334 None:intergenic 30.0%
TTAGTTGCATTATCTCAATC+TGG + chr1_3:50092314-50092333 Msa0123180:CDS 30.0%
TAATTGAATGTTACCACATG+TGG + chr1_3:50092524-50092543 Msa0123180:intron 30.0%
! CCACTTATAAACTCATTTTC+GGG - chr1_3:50092639-50092658 None:intergenic 30.0%
! CCCACTTATAAACTCATTTT+CGG - chr1_3:50092640-50092659 None:intergenic 30.0%
CCGAAAATGAGTTTATAAGT+GGG + chr1_3:50092637-50092656 Msa0123180:intron 30.0%
AAAATGAGTTTATAAGTGGG+AGG + chr1_3:50092640-50092659 Msa0123180:intron 30.0%
!!! ACCTAAAAAACTGGTTTTGT+AGG + chr1_3:50092671-50092690 Msa0123180:intron 30.0%
!!! CCTAAAAAACTGGTTTTGTA+GGG + chr1_3:50092672-50092691 Msa0123180:intron 30.0%
!! TACAATACTTTTGGGAAAAG+GGG - chr1_3:50092842-50092861 None:intergenic 30.0%
!! CTACAATACTTTTGGGAAAA+GGG - chr1_3:50092843-50092862 None:intergenic 30.0%
!! TCTACAATACTTTTGGGAAA+AGG - chr1_3:50092844-50092863 None:intergenic 30.0%
!! TTTCCCAAAAGTATTGTAGA+AGG + chr1_3:50092844-50092863 Msa0123180:intron 30.0%
! CTTCCTTCTACAATACTTTT+GGG - chr1_3:50092850-50092869 None:intergenic 30.0%
! ACTTCCTTCTACAATACTTT+TGG - chr1_3:50092851-50092870 None:intergenic 30.0%
TAAACATAACTCCAGACAAA+AGG - chr1_3:50092880-50092899 None:intergenic 30.0%
!! TCAGTCATTTTCGTAATCAA+CGG + chr1_3:50093018-50093037 Msa0123180:CDS 30.0%
! TACATGTATCATTCTGGAAA+CGG + chr1_3:50093198-50093217 Msa0123180:three_prime_UTR 30.0%
!!! GAAACGGTTTTTTATCTTAG+CGG + chr1_3:50093214-50093233 Msa0123180:three_prime_UTR 30.0%
!!! TATCTTAGCGGTTTTTTGTA+CGG + chr1_3:50093226-50093245 Msa0123180:three_prime_UTR 30.0%
TGCAGTCTTCATTCAATACT+AGG + chr1_3:50087827-50087846 Msa0123180:five_prime_UTR 35.0%
CAATACTAGGCATCTCATAA+CGG + chr1_3:50087840-50087859 Msa0123180:five_prime_UTR 35.0%
TCCAACAACTACAAACAAGA+GGG - chr1_3:50088001-50088020 None:intergenic 35.0%
! GCTTTTACAGACAACTTTGT+TGG + chr1_3:50088044-50088063 Msa0123180:five_prime_UTR 35.0%
! AGGATCTGTTTTACTTGTGT+CGG + chr1_3:50088184-50088203 Msa0123180:five_prime_UTR 35.0%
AGTTTCACAACCATGCATAT+AGG + chr1_3:50088212-50088231 Msa0123180:exon 35.0%
!! ACTTTTTGTTGGGTTGTTTC+TGG + chr1_3:50088391-50088410 Msa0123180:intron 35.0%
!!! CTTTTTGTTGGGTTGTTTCT+GGG + chr1_3:50088392-50088411 Msa0123180:intron 35.0%
TTTCACCCCAAAAACCAAAA+TGG - chr1_3:50088546-50088565 None:intergenic 35.0%
!!! ATGTCATTTTCATTGGGGTT+AGG + chr1_3:50088751-50088770 Msa0123180:intron 35.0%
GGCATATATGTCAACACAAA+AGG + chr1_3:50088772-50088791 Msa0123180:intron 35.0%
! GTAATTTTGTGCTAGACCTA+TGG + chr1_3:50088885-50088904 Msa0123180:intron 35.0%
GACCTATGGTATAAAGATTC+AGG + chr1_3:50088899-50088918 Msa0123180:intron 35.0%
GACCTGAATCTTTATACCAT+AGG - chr1_3:50088904-50088923 None:intergenic 35.0%
GTAGTTAAGAGGTTCTCATT+CGG + chr1_3:50089199-50089218 Msa0123180:intron 35.0%
AACATTATCTCATCCGATGT+GGG - chr1_3:50089311-50089330 None:intergenic 35.0%
AAACATTATCTCATCCGATG+TGG - chr1_3:50089312-50089331 None:intergenic 35.0%
ATAAACCAAAGGTAGATAGG+TGG - chr1_3:50089441-50089460 None:intergenic 35.0%
GTATATGATTTACTGGGGAA+TGG - chr1_3:50089674-50089693 None:intergenic 35.0%
! TTATTGCAGATCTTCTGGAA+GGG - chr1_3:50089841-50089860 None:intergenic 35.0%
ATTATTGCAGATCTTCTGGA+AGG - chr1_3:50089842-50089861 None:intergenic 35.0%
CCATATTATTGCAGATCTTC+TGG - chr1_3:50089846-50089865 None:intergenic 35.0%
CCAGAAGATCTGCAATAATA+TGG + chr1_3:50089843-50089862 Msa0123180:CDS 35.0%
GATCTGCAATAATATGGTTG+GGG + chr1_3:50089849-50089868 Msa0123180:CDS 35.0%
ATACTCAACAGAAGCGATTA+AGG - chr1_3:50090248-50090267 None:intergenic 35.0%
ACAGATAAACACACGATGTT+TGG - chr1_3:50090447-50090466 None:intergenic 35.0%
ACCTTGCAAGGAAAATCTAA+AGG + chr1_3:50090744-50090763 Msa0123180:CDS 35.0%
! TCCTTTAGATTTTCCTTGCA+AGG - chr1_3:50090748-50090767 None:intergenic 35.0%
GATAAAGGACAACGAAAGTA+CGG - chr1_3:50090976-50090995 None:intergenic 35.0%
CTTTCGTTGTCCTTTATCAT+TGG + chr1_3:50090978-50090997 Msa0123180:CDS 35.0%
TCAAAGCTATGATAGCAACT+TGG + chr1_3:50091145-50091164 Msa0123180:CDS 35.0%
TATGCTCAGAGTTACTAGAA+CGG - chr1_3:50091191-50091210 None:intergenic 35.0%
AGTAACTCTGAGCATAATAC+TGG + chr1_3:50091195-50091214 Msa0123180:CDS 35.0%
GATATCTCTTTCAGATCCAA+TGG + chr1_3:50091243-50091262 Msa0123180:CDS 35.0%
TCACTTCTGCTGTGAATATA+TGG - chr1_3:50091321-50091340 None:intergenic 35.0%
CCGTTTCAAAAGATGTATCA+AGG + chr1_3:50091382-50091401 Msa0123180:CDS 35.0%
! TCACATCTTGTTTCAAACTC+GGG + chr1_3:50091513-50091532 Msa0123180:CDS 35.0%
CAATTTATTGACATGAGACG+AGG - chr1_3:50091556-50091575 None:intergenic 35.0%
ACAGAAAACCGTATCATTGT+AGG + chr1_3:50091654-50091673 Msa0123180:CDS 35.0%
CAGAAAACCGTATCATTGTA+GGG + chr1_3:50091655-50091674 Msa0123180:CDS 35.0%
ATTTCGCTGCTATATTCAGA+CGG + chr1_3:50091702-50091721 Msa0123180:CDS 35.0%
GAGAACGGTAAAGCAAAAAT+CGG + chr1_3:50091900-50091919 Msa0123180:CDS 35.0%
GAGGTTATATAAAGCAGTAG+CGG - chr1_3:50091994-50092013 None:intergenic 35.0%
AGGTTAGAAATTGCAAGAGA+AGG + chr1_3:50092152-50092171 Msa0123180:CDS 35.0%
TTAGAAATTGCAAGAGAAGG+TGG + chr1_3:50092155-50092174 Msa0123180:CDS 35.0%
AATTATGCCTACATAGTTCC+AGG + chr1_3:50092252-50092271 Msa0123180:CDS 35.0%
TACAAAACCTGGAACTATGT+AGG - chr1_3:50092262-50092281 None:intergenic 35.0%
TAAAACCAGTGTACAAAACC+TGG - chr1_3:50092273-50092292 None:intergenic 35.0%
!!! TGTACACTGGTTTTACAAGA+AGG + chr1_3:50092278-50092297 Msa0123180:CDS 35.0%
GCACTAACATTTCGGATTAA+AGG - chr1_3:50092599-50092618 None:intergenic 35.0%
TAGCAGTAGCACTAACATTT+CGG - chr1_3:50092607-50092626 None:intergenic 35.0%
CCCGAAAATGAGTTTATAAG+TGG + chr1_3:50092636-50092655 Msa0123180:intron 35.0%
GAATTCCTCACCTAAAAAAC+TGG + chr1_3:50092662-50092681 Msa0123180:intron 35.0%
!!! CAAAACCAGTTTTTTAGGTG+AGG - chr1_3:50092670-50092689 None:intergenic 35.0%
!!! CCCTACAAAACCAGTTTTTT+AGG - chr1_3:50092675-50092694 None:intergenic 35.0%
AATGACTTCACTAGTAGTAC+AGG - chr1_3:50092752-50092771 None:intergenic 35.0%
AAAAGGGGTTATGGAAGTAA+AGG - chr1_3:50092827-50092846 None:intergenic 35.0%
!! CAGTCATTTTCGTAATCAAC+GGG + chr1_3:50093019-50093038 Msa0123180:CDS 35.0%
! TCTTCATGATTTTCCCTTTG+TGG - chr1_3:50093054-50093073 None:intergenic 35.0%
AATTACTTAGGCTAGGAGAA+GGG - chr1_3:50093103-50093122 None:intergenic 35.0%
AAATTACTTAGGCTAGGAGA+AGG - chr1_3:50093104-50093123 None:intergenic 35.0%
CCTAAATCTATAGAATCAGG+AGG - chr1_3:50093141-50093160 None:intergenic 35.0%
CCTCCTGATTCTATAGATTT+AGG + chr1_3:50093138-50093157 Msa0123180:three_prime_UTR 35.0%
!!! ATCTTAGCGGTTTTTTGTAC+GGG + chr1_3:50093227-50093246 Msa0123180:three_prime_UTR 35.0%
!! TAGTTTCTGAAGCTTTAGCT+TGG + chr1_3:50093297-50093316 Msa0123180:three_prime_UTR 35.0%
CTACTAGAGCATAACTCATA+TGG + chr1_3:50093344-50093363 Msa0123180:three_prime_UTR 35.0%
! TATATGCACTGAACTGACTT+GGG - chr1_3:50093380-50093399 None:intergenic 35.0%
ATATATGCACTGAACTGACT+TGG - chr1_3:50093381-50093400 None:intergenic 35.0%
! CTGCATTTGGGATTGGATTA+GGG - chr1_3:50087812-50087831 None:intergenic 40.0%
! ACTGCATTTGGGATTGGATT+AGG - chr1_3:50087813-50087832 None:intergenic 40.0%
! ATGAAGACTGCATTTGGGAT+TGG - chr1_3:50087819-50087838 None:intergenic 40.0%
GTCCAACAACTACAAACAAG+AGG - chr1_3:50088002-50088021 None:intergenic 40.0%
CTGAGAGAAAGGAAAGAAGA+GGG - chr1_3:50088024-50088043 None:intergenic 40.0%
TCTGTAAAAGCCTGAGAGAA+AGG - chr1_3:50088035-50088054 None:intergenic 40.0%
! GGGTTTTCTGTGGAAAACTT+AGG + chr1_3:50088412-50088431 Msa0123180:intron 40.0%
TGAGGAGAGGTTGTAAAGAA+GGG + chr1_3:50088567-50088586 Msa0123180:intron 40.0%
ATTTCCAGACTCTACTGCAA+TGG + chr1_3:50088809-50088828 Msa0123180:intron 40.0%
GTAGCCCTTACTTTACAATC+TGG + chr1_3:50088948-50088967 Msa0123180:intron 40.0%
! TATGGGGTTTTTATGCCGTT+CGG + chr1_3:50088974-50088993 Msa0123180:intron 40.0%
GTGGGAAAAAAAACAGTCTC+TGG + chr1_3:50089041-50089060 Msa0123180:intron 40.0%
! ACAAAACCGGCTTAAAGTGA+GGG - chr1_3:50089363-50089382 None:intergenic 40.0%
! TACAAAACCGGCTTAAAGTG+AGG - chr1_3:50089364-50089383 None:intergenic 40.0%
!! TCACTTTAAGCCGGTTTTGT+AGG + chr1_3:50089363-50089382 Msa0123180:intron 40.0%
!! CACTTTAAGCCGGTTTTGTA+GGG + chr1_3:50089364-50089383 Msa0123180:intron 40.0%
CTATCTCAACCCTACAAAAC+CGG - chr1_3:50089376-50089395 None:intergenic 40.0%
GATAGGTGGAATTGACATGA+AGG - chr1_3:50089427-50089446 None:intergenic 40.0%
CAATTCCACCTATCTACCTT+TGG + chr1_3:50089433-50089452 Msa0123180:intron 40.0%
CTTGCATGAAGAGAAACTTG+TGG + chr1_3:50089564-50089583 Msa0123180:intron 40.0%
CTGTGCGATTTCACTTAAAC+AGG + chr1_3:50089727-50089746 Msa0123180:intron 40.0%
ATATGCGTGTTAACGAAGCA+AGG + chr1_3:50089962-50089981 Msa0123180:CDS 40.0%
TATGCGTGTTAACGAAGCAA+GGG + chr1_3:50089963-50089982 Msa0123180:CDS 40.0%
CTGTGAATCTTGCTCATCTT+TGG - chr1_3:50090009-50090028 None:intergenic 40.0%
! TTCTTTTGAACTGGGATTGG+CGG + chr1_3:50090486-50090505 Msa0123180:intron 40.0%
! ACTTTTGCAGCACTATATCC+AGG + chr1_3:50090645-50090664 Msa0123180:intron 40.0%
TCTCAAGAAGGAAACAGCAA+TGG + chr1_3:50090678-50090697 Msa0123180:CDS 40.0%
AGATGATACTGAACCTTGCA+AGG + chr1_3:50090732-50090751 Msa0123180:CDS 40.0%
CTTGAAAGAGACTATTGCTG+TGG + chr1_3:50090807-50090826 Msa0123180:CDS 40.0%
AGAGACTATTGCTGTGGAAA+AGG + chr1_3:50090813-50090832 Msa0123180:CDS 40.0%
AAGGAAAGATTGAACGCTGA+AGG + chr1_3:50090832-50090851 Msa0123180:CDS 40.0%
TCACATAATCACGTAAGACG+CGG - chr1_3:50090909-50090928 None:intergenic 40.0%
GAGTACTTTGCAGTCAAAAG+TGG + chr1_3:50090937-50090956 Msa0123180:CDS 40.0%
CATGTTGGATCCTGTTATTG+TGG + chr1_3:50091005-50091024 Msa0123180:CDS 40.0%
TTGTCTCTCGTATGTTTGAC+CGG - chr1_3:50091034-50091053 None:intergenic 40.0%
AGAGACAATCCATCCAAAAG+TGG + chr1_3:50091046-50091065 Msa0123180:CDS 40.0%
!!! ATGATCAAGCCACTTTTGGA+TGG - chr1_3:50091058-50091077 None:intergenic 40.0%
ATCCAAAAGTGGCTTGATCA+TGG + chr1_3:50091057-50091076 Msa0123180:CDS 40.0%
TCCAAAAGTGGCTTGATCAT+GGG + chr1_3:50091058-50091077 Msa0123180:CDS 40.0%
GTAAGTCTTTGACGAGTCTT+TGG - chr1_3:50091096-50091115 None:intergenic 40.0%
!! TATGATAGCAACTTGGTGTG+AGG + chr1_3:50091152-50091171 Msa0123180:CDS 40.0%
AGATCCAATGGAGAAAGCAA+TGG + chr1_3:50091255-50091274 Msa0123180:CDS 40.0%
!! AAAGATGTATCAAGGGTGTC+TGG + chr1_3:50091390-50091409 Msa0123180:CDS 40.0%
TTTATTGACATGAGACGAGG+TGG - chr1_3:50091553-50091572 None:intergenic 40.0%
TTTCGCTGCTATATTCAGAC+GGG + chr1_3:50091703-50091722 Msa0123180:CDS 40.0%
AGACAACAAGGCCTTGATTA+TGG + chr1_3:50091779-50091798 Msa0123180:CDS 40.0%
TCTATTCAGCCTCTCTGTAA+TGG + chr1_3:50091878-50091897 Msa0123180:CDS 40.0%
ATGCTTTAATTGCACCGGAA+CGG - chr1_3:50091926-50091945 None:intergenic 40.0%
TTCCGGTGCAATTAAAGCAT+TGG + chr1_3:50091926-50091945 Msa0123180:CDS 40.0%
AGGAACACTTAGAGGAAAGA+AGG + chr1_3:50091965-50091984 Msa0123180:CDS 40.0%
AAAGCTCGAATAGTTCAAGC+TGG + chr1_3:50092032-50092051 Msa0123180:CDS 40.0%
TTGTTGAATCAGGTTCTCAG+AGG + chr1_3:50092198-50092217 Msa0123180:CDS 40.0%
TGTTGAATCAGGTTCTCAGA+GGG + chr1_3:50092199-50092218 Msa0123180:CDS 40.0%
!! TAGTTCCAGGTTTTGTACAC+TGG + chr1_3:50092265-50092284 Msa0123180:CDS 40.0%
TGAGATAATGCAACTAAGGG+AGG - chr1_3:50092311-50092330 None:intergenic 40.0%
TACTCCAAGAGCAAAGGAAA+AGG + chr1_3:50092337-50092356 Msa0123180:CDS 40.0%
! CATACCTTTTCCTTTGCTCT+TGG - chr1_3:50092344-50092363 None:intergenic 40.0%
CAAGAGCAAAGGAAAAGGTA+TGG + chr1_3:50092342-50092361 Msa0123180:intron 40.0%
! TCCTTTGCTATGCTTATGAG+TGG + chr1_3:50092380-50092399 Msa0123180:intron 40.0%
TCCACTCATAAGCATAGCAA+AGG - chr1_3:50092384-50092403 None:intergenic 40.0%
! TGTTCAACATGTGTCGCTAT+CGG - chr1_3:50092567-50092586 None:intergenic 40.0%
!! TTTCGGATTAAAGGAGTGTC+CGG - chr1_3:50092590-50092609 None:intergenic 40.0%
!!! TGGTTTTGTAGGGTTGAGTT+CGG + chr1_3:50092682-50092701 Msa0123180:intron 40.0%
!! ACTTTTGGGAAAAGGGGTTA+TGG - chr1_3:50092836-50092855 None:intergenic 40.0%
!! GAAGTTCTGATCCTTTTGTC+TGG + chr1_3:50092866-50092885 Msa0123180:intron 40.0%
! CTTGTTGTAAACATTCACGC+AGG + chr1_3:50092983-50093002 Msa0123180:intron 40.0%
! GCCCTCTTGTTTGTAGTTGT+TGG + chr1_3:50087997-50088016 Msa0123180:five_prime_UTR 45.0%
CCTGAGAGAAAGGAAAGAAG+AGG - chr1_3:50088025-50088044 None:intergenic 45.0%
CCTCTTCTTTCCTTTCTCTC+AGG + chr1_3:50088022-50088041 Msa0123180:five_prime_UTR 45.0%
!!! GGTTGTTTCTGGGTTTTCTG+TGG + chr1_3:50088402-50088421 Msa0123180:intron 45.0%
!!! TGGTTTTTGGGGTGAAACTG+AGG + chr1_3:50088549-50088568 Msa0123180:intron 45.0%
CTGAGGAGAGGTTGTAAAGA+AGG + chr1_3:50088566-50088585 Msa0123180:intron 45.0%
GCGGATGGCCTAATAGATAT+TGG - chr1_3:50089121-50089140 None:intergenic 45.0%
AGGGCATAGGTTTCACTGTT+TGG - chr1_3:50089822-50089841 None:intergenic 45.0%
TCCATAACATCGTCGAGTAC+TGG - chr1_3:50089892-50089911 None:intergenic 45.0%
TTAGCCAAAACCGATGCAGA+TGG - chr1_3:50090193-50090212 None:intergenic 45.0%
CTTCCAACTTTGCACATACC+TGG - chr1_3:50090219-50090238 None:intergenic 45.0%
CAGGTATGTGCAAAGTTGGA+AGG + chr1_3:50090217-50090236 Msa0123180:intron 45.0%
CTCAACAGAAGCGATTAAGG+AGG - chr1_3:50090245-50090264 None:intergenic 45.0%
! TGACAATGCCTCTTGCTGTA+CGG + chr1_3:50090281-50090300 Msa0123180:intron 45.0%
AACTGTTGCCACTCTGTAGT+TGG + chr1_3:50090390-50090409 Msa0123180:intron 45.0%
CACTCTGTAGTTGGAGACAT+GGG + chr1_3:50090399-50090418 Msa0123180:intron 45.0%
TCTTGAGACACTGAAGTTCC+TGG - chr1_3:50090666-50090685 None:intergenic 45.0%
GGAACTTCAGTGTCTCAAGA+AGG + chr1_3:50090666-50090685 Msa0123180:CDS 45.0%
! AAGGACAACGAAAGTACGGA+GGG - chr1_3:50090972-50090991 None:intergenic 45.0%
! AAAGGACAACGAAAGTACGG+AGG - chr1_3:50090973-50090992 None:intergenic 45.0%
GATCCTGTTATTGTGGCTTC+CGG + chr1_3:50091012-50091031 Msa0123180:CDS 45.0%
CTCAGAGTTACTAGAACGGT+TGG - chr1_3:50091187-50091206 None:intergenic 45.0%
GCATCCATTGCTTTCTCCAT+TGG - chr1_3:50091262-50091281 None:intergenic 45.0%
CACACTGCCCTACAATGATA+CGG - chr1_3:50091665-50091684 None:intergenic 45.0%
GTATCATTGTAGGGCAGTGT+GGG + chr1_3:50091664-50091683 Msa0123180:CDS 45.0%
TATCATTGTAGGGCAGTGTG+GGG + chr1_3:50091665-50091684 Msa0123180:CDS 45.0%
CAAGGCCTTGATTATGGAAG+CGG + chr1_3:50091785-50091804 Msa0123180:CDS 45.0%
AAGGCCTTGATTATGGAAGC+GGG + chr1_3:50091786-50091805 Msa0123180:CDS 45.0%
! AGCCTCTCTGTAATGGAGAA+CGG + chr1_3:50091885-50091904 Msa0123180:CDS 45.0%
TACCGTTCTCCATTACAGAG+AGG - chr1_3:50091890-50091909 None:intergenic 45.0%
AAAGCAAAAATCGGCCGTTC+CGG + chr1_3:50091909-50091928 Msa0123180:CDS 45.0%
CGCCAATGCTTTAATTGCAC+CGG - chr1_3:50091931-50091950 None:intergenic 45.0%
!! CGGTGCAATTAAAGCATTGG+CGG + chr1_3:50091929-50091948 Msa0123180:CDS 45.0%
CTTTCCTCTAAGTGTTCCTG+AGG - chr1_3:50091964-50091983 None:intergenic 45.0%
AGCTGGAGCTGTCAAATTTC+TGG + chr1_3:50092049-50092068 Msa0123180:CDS 45.0%
TTGTCAACCATTCCATTGGC+AGG - chr1_3:50092089-50092108 None:intergenic 45.0%
TGCCAATGGAATGGTTGACA+AGG + chr1_3:50092088-50092107 Msa0123180:CDS 45.0%
! AGCCTTGTCAACCATTCCAT+TGG - chr1_3:50092093-50092112 None:intergenic 45.0%
TGTCGACAGGTTTGACAGAA+GGG - chr1_3:50092120-50092139 None:intergenic 45.0%
TTGTCGACAGGTTTGACAGA+AGG - chr1_3:50092121-50092140 None:intergenic 45.0%
GTCAAACCTGTCGACAATTG+CGG + chr1_3:50092124-50092143 Msa0123180:CDS 45.0%
GTTGAATCAGGTTCTCAGAG+GGG + chr1_3:50092200-50092219 Msa0123180:CDS 45.0%
ATCTGGTACTCCAAGAGCAA+AGG + chr1_3:50092331-50092350 Msa0123180:CDS 45.0%
GTCCCACACTAGATGAGATA+TGG + chr1_3:50092428-50092447 Msa0123180:intron 45.0%
GGCCATATCTCATCTAGTGT+GGG - chr1_3:50092433-50092452 None:intergenic 45.0%
AGGCCATATCTCATCTAGTG+TGG - chr1_3:50092434-50092453 None:intergenic 45.0%
TGTCTGCGTCTTTGCTTCAT+AGG - chr1_3:50092454-50092473 None:intergenic 45.0%
TAGCGACACATGTTGAACAC+CGG + chr1_3:50092568-50092587 Msa0123180:intron 45.0%
! TCTACTTTGGTGGCTGTACT+CGG + chr1_3:50093263-50093282 Msa0123180:three_prime_UTR 45.0%
!! ACTGAACTGACTTGGGAGTT+GGG - chr1_3:50093373-50093392 None:intergenic 45.0%
!! CAAAAATAAAAAATTAATAA+AGG - chr1_3:50087956-50087975 None:intergenic 5.0%
! TTTGGGGTGAAACTGAGGAG+AGG + chr1_3:50088554-50088573 Msa0123180:intron 50.0%
TCCAGACTCTACTGCAATGG+TGG + chr1_3:50088812-50088831 Msa0123180:intron 50.0%
CCAGACTCTACTGCAATGGT+GGG + chr1_3:50088813-50088832 Msa0123180:intron 50.0%
! ATGGTGGGAGAGATGCATAG+TGG + chr1_3:50088828-50088847 Msa0123180:intron 50.0%
TGGTGGGAGAGATGCATAGT+GGG + chr1_3:50088829-50088848 Msa0123180:intron 50.0%
! GGACATCTGGAGCATAACCA+GGG - chr1_3:50089151-50089170 None:intergenic 50.0%
! TGGACATCTGGAGCATAACC+AGG - chr1_3:50089152-50089171 None:intergenic 50.0%
ATGTCTAGTGCTCAGCGTGA+GGG + chr1_3:50089270-50089289 Msa0123180:intron 50.0%
GTGTGTTAGGAGTCCCACAT+CGG + chr1_3:50089295-50089314 Msa0123180:intron 50.0%
AGGCATCCCTCACTTTAAGC+CGG + chr1_3:50089354-50089373 Msa0123180:intron 50.0%
! CAGATCTTCTGGAAGGGCAT+AGG - chr1_3:50089835-50089854 None:intergenic 50.0%
GCCAGTACTCGACGATGTTA+TGG + chr1_3:50089888-50089907 Msa0123180:CDS 50.0%
! TGCAGATGGTGGTGACTCTA+AGG - chr1_3:50090179-50090198 None:intergenic 50.0%
AGAGTCACCACCATCTGCAT+CGG + chr1_3:50090180-50090199 Msa0123180:CDS 50.0%
!!! ACCACCATCTGCATCGGTTT+TGG + chr1_3:50090186-50090205 Msa0123180:CDS 50.0%
!!! ATCGGTTTTGGCTAACCTCC+AGG + chr1_3:50090198-50090217 Msa0123180:CDS 50.0%
CCAACTTTGCACATACCTGG+AGG - chr1_3:50090216-50090235 None:intergenic 50.0%
CCTCCAGGTATGTGCAAAGT+TGG + chr1_3:50090213-50090232 Msa0123180:intron 50.0%
! TGCCTCTTGCTGTACGGTTT+AGG + chr1_3:50090287-50090306 Msa0123180:intron 50.0%
! GCCTCTTGCTGTACGGTTTA+GGG + chr1_3:50090288-50090307 Msa0123180:intron 50.0%
! CCTCTTGCTGTACGGTTTAG+GGG + chr1_3:50090289-50090308 Msa0123180:intron 50.0%
CCATGTCTCCAACTACAGAG+TGG - chr1_3:50090401-50090420 None:intergenic 50.0%
CCACTCTGTAGTTGGAGACA+TGG + chr1_3:50090398-50090417 Msa0123180:intron 50.0%
TGACCGGAAGCCACAATAAC+AGG - chr1_3:50091018-50091037 None:intergenic 50.0%
!! GCCCATGATCAAGCCACTTT+TGG - chr1_3:50091062-50091081 None:intergenic 50.0%
TTCTATCCCTCCCGCATCTA+CGG - chr1_3:50091442-50091461 None:intergenic 50.0%
GATGCGGGAGGGATAGAAAA+TGG + chr1_3:50091444-50091463 Msa0123180:CDS 50.0%
CTACTGCTGCAGAAGAACTG+AGG + chr1_3:50091613-50091632 Msa0123180:CDS 50.0%
CGTATCATTGTAGGGCAGTG+TGG + chr1_3:50091663-50091682 Msa0123180:CDS 50.0%
AGGCCTTGATTATGGAAGCG+GGG + chr1_3:50091787-50091806 Msa0123180:CDS 50.0%
! GACAGGAAATGATGGTGCCA+AGG + chr1_3:50091839-50091858 Msa0123180:CDS 50.0%
! TGGTGCCAAGGAGAATTCTG+CGG + chr1_3:50091851-50091870 Msa0123180:CDS 50.0%
CTTGCCTCAGGAACACTTAG+AGG + chr1_3:50091957-50091976 Msa0123180:CDS 50.0%
! GAGTTAACGGATCCTGCCAA+TGG + chr1_3:50092074-50092093 Msa0123180:CDS 50.0%
AACGGATCCTGCCAATGGAA+TGG + chr1_3:50092079-50092098 Msa0123180:CDS 50.0%
AAACCTGTCGACAATTGCGG+AGG + chr1_3:50092127-50092146 Msa0123180:CDS 50.0%
AACCTGTCGACAATTGCGGA+GGG + chr1_3:50092128-50092147 Msa0123180:CDS 50.0%
ATCAGGTTCTCAGAGGGGAA+AGG + chr1_3:50092205-50092224 Msa0123180:CDS 50.0%
TGAAGCAAAGACGCAGACAC+TGG + chr1_3:50092455-50092474 Msa0123180:intron 50.0%
!! TGAACTGACTTGGGAGTTGG+GGG - chr1_3:50093371-50093390 None:intergenic 50.0%
!! CTGAACTGACTTGGGAGTTG+GGG - chr1_3:50093372-50093391 None:intergenic 50.0%
!! CACTGAACTGACTTGGGAGT+TGG - chr1_3:50093374-50093393 None:intergenic 50.0%
CCCACCATTGCAGTAGAGTC+TGG - chr1_3:50088816-50088835 None:intergenic 55.0%
GCGTGAGAAACGCATAGGGT+GGG + chr1_3:50089023-50089042 Msa0123180:intron 55.0%
! GCATAACCAGGGAGGCATAG+CGG - chr1_3:50089140-50089159 None:intergenic 55.0%
! CATCTGGAGCATAACCAGGG+AGG - chr1_3:50089148-50089167 None:intergenic 55.0%
ATGCTCCAGATGTCCAGTCC+TGG + chr1_3:50089156-50089175 Msa0123180:intron 55.0%
TGCTCCAGATGTCCAGTCCT+GGG + chr1_3:50089157-50089176 Msa0123180:intron 55.0%
CATGTCTAGTGCTCAGCGTG+AGG + chr1_3:50089269-50089288 Msa0123180:intron 55.0%
TGTCTAGTGCTCAGCGTGAG+GGG + chr1_3:50089271-50089290 Msa0123180:intron 55.0%
GCCAAAACCGATGCAGATGG+TGG - chr1_3:50090190-50090209 None:intergenic 55.0%
CCCCTAAACCGTACAGCAAG+AGG - chr1_3:50090292-50090311 None:intergenic 55.0%
!! GAAGGTGTCGTCCGTAGATG+CGG + chr1_3:50091428-50091447 Msa0123180:CDS 55.0%
!! AAGGTGTCGTCCGTAGATGC+GGG + chr1_3:50091429-50091448 Msa0123180:CDS 55.0%
GGCCTTGATTATGGAAGCGG+GGG + chr1_3:50091788-50091807 Msa0123180:CDS 55.0%
AGCCCCCGCTTCCATAATCA+AGG - chr1_3:50091793-50091812 None:intergenic 55.0%
AGCTGCCGCAGAATTCTCCT+TGG - chr1_3:50091859-50091878 None:intergenic 55.0%
TTGGCGGAACTTCTTGCCTC+AGG + chr1_3:50091945-50091964 Msa0123180:CDS 55.0%
TTCCCTCCGCAATTGTCGAC+AGG - chr1_3:50092133-50092152 None:intergenic 55.0%
TGTCGACAATTGCGGAGGGA+AGG + chr1_3:50092132-50092151 Msa0123180:CDS 55.0%
CGACACGACATAGCCACATG+TGG - chr1_3:50092540-50092559 None:intergenic 55.0%
ACGGGAAGCAGCTACCACAA+AGG + chr1_3:50093037-50093056 Msa0123180:CDS 55.0%
CGGGAAGCAGCTACCACAAA+GGG + chr1_3:50093038-50093057 Msa0123180:CDS 55.0%
! ACTTTGGTGGCTGTACTCGG+AGG + chr1_3:50093266-50093285 Msa0123180:three_prime_UTR 55.0%
CTCACGCGCCCTATGCAGTT+TGG - chr1_3:50089010-50089029 None:intergenic 60.0%
AGGGCGCGTGAGAAACGCAT+AGG + chr1_3:50089018-50089037 Msa0123180:intron 60.0%
GGGCGCGTGAGAAACGCATA+GGG + chr1_3:50089019-50089038 Msa0123180:intron 60.0%
CGCGTGAGAAACGCATAGGG+TGG + chr1_3:50089022-50089041 Msa0123180:intron 60.0%
! AACCAGGGAGGCATAGCGGA+TGG - chr1_3:50089136-50089155 None:intergenic 60.0%
CACTCCCAGGACTGGACATC+TGG - chr1_3:50089164-50089183 None:intergenic 60.0%
! TGTCCAGTCCTGGGAGTGTG+AGG + chr1_3:50089166-50089185 Msa0123180:intron 60.0%
! GTCCAGTCCTGGGAGTGTGA+GGG + chr1_3:50089167-50089186 Msa0123180:intron 60.0%
! TCCAGTCCTGGGAGTGTGAG+GGG + chr1_3:50089168-50089187 Msa0123180:intron 60.0%
! CAGCGTGAGGGGTGTGTGTT+AGG + chr1_3:50089282-50089301 Msa0123180:intron 60.0%
TGTCGTCCGTAGATGCGGGA+GGG + chr1_3:50091433-50091452 Msa0123180:CDS 60.0%
! TTGGTGGCTGTACTCGGAGG+AGG + chr1_3:50093269-50093288 Msa0123180:three_prime_UTR 60.0%
! CCAGTCCTGGGAGTGTGAGG+GGG + chr1_3:50089169-50089188 Msa0123180:intron 65.0%
! CAGTCCTGGGAGTGTGAGGG+GGG + chr1_3:50089170-50089189 Msa0123180:intron 65.0%
GGGGGTGGGGGGTAGTTAAG+AGG + chr1_3:50089188-50089207 Msa0123180:intron 65.0%
GTGTCGTCCGTAGATGCGGG+AGG + chr1_3:50091432-50091451 Msa0123180:CDS 65.0%
GGCCATCCGCTATGCCTCCC+TGG + chr1_3:50089131-50089150 Msa0123180:intron 70.0%
CCCCCTCACACTCCCAGGAC+TGG - chr1_3:50089172-50089191 None:intergenic 70.0%
! TCCTGGGAGTGTGAGGGGGG+TGG + chr1_3:50089173-50089192 Msa0123180:intron 70.0%
! CCTGGGAGTGTGAGGGGGGT+GGG + chr1_3:50089174-50089193 Msa0123180:intron 70.0%
! CTGGGAGTGTGAGGGGGGTG+GGG + chr1_3:50089175-50089194 Msa0123180:intron 70.0%
! TGGGAGTGTGAGGGGGGTGG+GGG + chr1_3:50089176-50089195 Msa0123180:intron 70.0%
CCCACCCCCCTCACACTCCC+AGG - chr1_3:50089177-50089196 None:intergenic 75.0%
! GGGAGTGTGAGGGGGGTGGG+GGG + chr1_3:50089177-50089196 Msa0123180:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50087772 50093459 50087772 ID=Msa0123180;Name=Msa0123180
chr1_3 mRNA 50087772 50093459 50087772 ID=Msa0123180-mRNA-1;Parent=Msa0123180;Name=Msa0123180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=452|1|1|1|0.75|0.6|5|389|725
chr1_3 exon 50087772 50088233 50087772 ID=Msa0123180-mRNA-1:exon:15288;Parent=Msa0123180-mRNA-1
chr1_3 exon 50089749 50090029 50089749 ID=Msa0123180-mRNA-1:exon:15289;Parent=Msa0123180-mRNA-1
chr1_3 exon 50090103 50090219 50090103 ID=Msa0123180-mRNA-1:exon:15290;Parent=Msa0123180-mRNA-1
chr1_3 exon 50090655 50092358 50090655 ID=Msa0123180-mRNA-1:exon:15291;Parent=Msa0123180-mRNA-1
chr1_3 exon 50093005 50093459 50093005 ID=Msa0123180-mRNA-1:exon:15292;Parent=Msa0123180-mRNA-1
chr1_3 five_prime_UTR 50087772 50088223 50087772 ID=Msa0123180-mRNA-1:five_prime_utr;Parent=Msa0123180-mRNA-1
chr1_3 CDS 50088224 50088233 50088224 ID=Msa0123180-mRNA-1:cds;Parent=Msa0123180-mRNA-1
chr1_3 CDS 50089749 50090029 50089749 ID=Msa0123180-mRNA-1:cds;Parent=Msa0123180-mRNA-1
chr1_3 CDS 50090103 50090219 50090103 ID=Msa0123180-mRNA-1:cds;Parent=Msa0123180-mRNA-1
chr1_3 CDS 50090655 50092358 50090655 ID=Msa0123180-mRNA-1:cds;Parent=Msa0123180-mRNA-1
chr1_3 CDS 50093005 50093070 50093005 ID=Msa0123180-mRNA-1:cds;Parent=Msa0123180-mRNA-1
chr1_3 three_prime_UTR 50093071 50093459 50093071 ID=Msa0123180-mRNA-1:three_prime_utr;Parent=Msa0123180-mRNA-1
Gene Sequence

>Msa0123180

ATGCATATAGGTCAAACGGATACAGCGTCAGTAACATGTCTGATCAACAGCATTTCTCGATTCGTTCATCTAGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAGAAGATCTGCAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTACTCGACGATGTTATGGATTACAAAATTCCTTTACATCAAAATTTATGTAAAGTATGTGAAGAATTGGATATGCGTGTTAACGAAGCAAGGGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCTTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCAATGAGAGAGCAAAGAGATGATACTGAACCTTGCAAGGAAAATCTAAAGGAAATGATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAAAGAGACTATTGCTGTGGAAAAGGAAAGATTGAACGCTGAAGGACATAAAATGAAAAGCGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCGTCTTACGTGATTATGTGATGAAAACTGAGTACTTTGCAGTCAAAAGTGGTTTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGACAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAAAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACACCAACCGTTCTAGTAACTCTGAGCATAATACTGGAAATGCATTTGAAGAACAAAAAGGCGATATCTCTTTCAGATCCAATGGAGAAAGCAATGGATGCCAGAATATAGAAATAGAAAAGTGGGAGCTACAATCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCCGTTTCAAAAGATGTATCAAGGGTGTCTGGTAAGTATCAAATTACGAAGGTGTCGTCCGTAGATGCGGGAGGGATAGAAAATGGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTCACATCTTGTTTCAAACTCGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGATCTCCAAAACGAATCAATTGAAGTGAAAACTACTGCTGCAGAAGAACTGAGGCTCCTTACAAAGCATAACACAGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTAATTTCGCTGCTATATTCAGACGGGAAAGTAACACAAGAGCATGCTGTGACAGCTCTGCTTAATTTATCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCGGGGGCTATTGAACCCCTTATCCATGTTTTAAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACGGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCATTGGCGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCCGCTACTGCTTTATATAACCTCTCAATATTTCATGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTCAAATTTCTGGTTGAGTTAACGGATCCTGCCAATGGAATGGTTGACAAGGCTGTTGCCCTTCTGTCAAACCTGTCGACAATTGCGGAGGGAAGGTTAGAAATTGCAAGAGAAGGTGGCATCCCGTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCAATTCTCTTACAATTATGCCTACATAGTTCCAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGCAGCTACCACAAAGGGAAAATCATGA
Protein sequence

>Msa0123180

MHIGQTDTASVTCLINSISRFVHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDVMDYKIPLHQNLCKVCEELDMRVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKAMREQRDDTEPCKENLKEMIELLKLTSTQELLKETIAVEKERLNAEGHKMKSDLEEINEIVNLVRVLRDYVMKTEYFAVKSGFSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNTNRSSNSEHNTGNAFEEQKGDISFRSNGESNGCQNIEIEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRVSGKYQITKVSSVDAGGIENGKNNNSNTTNSHSRVDSHLVSNSGLNELTTSSHVNKLIEDLQNESIEVKTTAAEELRLLTKHNTENRIIVGQCGAVMPLISLLYSDGKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAIKALAELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPANGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREAATTKGKS*