AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027550 MtrunA17_Chr1g0183781 95.592 726 31 1 1 726 1 725 0.0 1361
Msa0027550 MtrunA17_Chr7g0261371 64.875 800 206 6 1 726 1 799 0.0 946
Msa0027550 MtrunA17_Chr3g0106931 67.742 279 90 0 438 716 551 829 8.93e-111 355
Msa0027550 MtrunA17_Chr3g0106931 39.130 299 182 0 14 312 6 304 2.21e-59 215
Msa0027550 MtrunA17_Chr1g0152561 53.237 278 129 1 440 716 61 338 5.18e-85 272
Msa0027550 MtrunA17_Chr3g0134761 47.468 316 159 3 414 724 27 340 1.51e-82 265
Msa0027550 MtrunA17_Chr2g0290151 52.143 280 133 1 444 722 179 458 7.73e-79 259
Msa0027550 MtrunA17_Chr4g0031431 46.263 281 150 1 438 717 351 631 1.48e-69 240
Msa0027550 MtrunA17_Chr4g0031431 25.610 656 389 18 31 634 23 631 3.07e-44 169
Msa0027550 MtrunA17_Chr4g0044411 46.545 275 146 1 440 713 373 647 2.51e-68 237
Msa0027550 MtrunA17_Chr4g0044411 31.579 380 226 10 241 611 273 627 3.24e-38 151
Msa0027550 MtrunA17_Chr7g0248251 48.327 269 136 3 443 709 370 637 7.21e-63 221
Msa0027550 MtrunA17_Chr1g0199321 49.077 271 137 1 440 709 345 615 1.55e-62 220
Msa0027550 MtrunA17_Chr1g0199321 26.878 599 374 14 14 587 15 574 7.88e-41 159
Msa0027550 MtrunA17_Chr7g0237931 43.110 283 157 2 427 709 324 602 9.48e-62 218
Msa0027550 MtrunA17_Chr7g0237931 25.926 459 279 14 172 591 171 607 4.84e-27 116
Msa0027550 MtrunA17_Chr8g0377151 33.060 487 257 14 242 716 283 712 1.74e-54 200
Msa0027550 MtrunA17_Chr5g0437411 39.935 308 179 5 408 709 373 680 4.32e-53 195
Msa0027550 MtrunA17_Chr2g0284461 41.577 279 156 7 441 713 397 674 1.17e-42 165
Msa0027550 MtrunA17_Chr5g0404311 28.629 496 277 14 242 716 274 713 2.85e-40 158
Msa0027550 MtrunA17_Chr5g0429231 37.770 278 167 4 443 714 37 314 1.98e-38 146
Msa0027550 MtrunA17_Chr3g0122721 30.584 497 272 16 236 717 273 711 1.26e-37 150
Msa0027550 MtrunA17_Chr8g0373031 27.122 483 293 11 242 714 276 709 6.69e-37 148
Msa0027550 MtrunA17_Chr7g0234671 33.904 292 181 8 426 709 159 446 1.03e-34 138
Msa0027550 MtrunA17_Chr7g0234671 41.905 105 54 1 210 307 40 144 3.22e-21 97.4
Msa0027550 MtrunA17_Chr7g0275081 37.828 267 157 5 451 709 182 447 2.31e-33 134
Msa0027550 MtrunA17_Chr7g0275081 40.870 115 54 2 210 310 33 147 9.66e-23 102
Msa0027550 MtrunA17_Chr5g0435041 32.990 291 185 6 431 714 11 298 1.04e-31 127
Msa0027550 MtrunA17_Chr4g0059201 32.727 275 177 5 455 721 437 711 2.15e-29 124
Msa0027550 MtrunA17_Chr4g0059201 24.654 361 230 9 242 586 320 654 9.30e-20 94.4
Msa0027550 MtrunA17_Chr3g0118001 31.387 274 184 2 443 713 214 486 2.36e-29 123
Msa0027550 MtrunA17_Chr6g0449461 32.862 283 176 8 442 714 4 282 5.51e-28 115
Msa0027550 MtrunA17_Chr3g0111451 34.028 288 180 6 433 713 34 318 8.75e-26 110
Msa0027550 MtrunA17_Chr6g0451581 28.889 270 188 2 443 709 241 509 1.65e-25 111
Msa0027550 MtrunA17_Chr3g0137061 30.822 292 186 7 434 713 107 394 1.09e-24 108
Msa0027550 MtrunA17_Chr1g0149941 32.632 285 178 8 442 713 175 458 1.65e-24 108
Msa0027550 MtrunA17_Chr3g0117851 31.752 274 146 7 453 720 391 629 2.42e-24 108
Msa0027550 MtrunA17_Chr3g0117851 26.913 379 227 8 242 596 276 628 2.82e-22 102
Msa0027550 MtrunA17_Chr5g0413681 28.212 358 227 10 245 591 284 622 6.94e-23 103
Msa0027550 MtrunA17_Chr5g0413681 32.609 276 177 5 443 709 386 661 1.70e-19 93.2
Msa0027550 MtrunA17_Chr1g0189811 25.792 442 237 12 214 596 34 443 4.44e-22 100
Msa0027550 MtrunA17_Chr1g0189811 36.015 261 157 5 458 709 174 433 6.62e-22 99.4
Msa0027550 MtrunA17_Chr4g0013091 57.971 69 29 0 242 310 314 382 7.61e-22 100
Msa0027550 MtrunA17_Chr4g0013091 31.803 305 189 10 434 726 411 708 2.50e-19 92.8
Msa0027550 MtrunA17_Chr4g0044631 52.703 74 35 0 238 311 11 84 6.88e-21 95.9
Msa0027550 MtrunA17_Chr4g0048811 32.353 204 132 4 514 714 121 321 8.61e-21 94.4
Msa0027550 MtrunA17_Chr4g0048811 46.377 69 36 1 240 307 4 72 5.82e-16 79.7
Msa0027550 MtrunA17_Chr8g0350681 29.675 246 160 7 480 717 238 478 5.07e-19 91.3
Msa0027550 MtrunA17_Chr3g0110121 47.297 74 39 0 240 313 35 108 1.67e-18 89.0
Msa0027550 MtrunA17_Chr1g0198984 55.932 59 26 0 254 312 1 59 1.96e-18 81.6
Msa0027550 MtrunA17_Chr2g0280671 29.167 240 161 4 484 717 147 383 5.61e-18 86.7
Msa0027550 MtrunA17_Chr2g0280671 53.125 64 30 0 244 307 18 81 2.96e-17 84.3
Msa0027550 MtrunA17_Chr5g0420471 45.205 73 40 0 242 314 26 98 5.77e-18 87.4
Msa0027550 MtrunA17_Chr5g0434171 41.892 74 43 0 240 313 34 107 1.48e-17 85.9
Msa0027550 MtrunA17_Chr6g0479261 43.836 73 41 0 242 314 26 98 1.56e-17 85.9
Msa0027550 MtrunA17_Chr1g0177261 46.753 77 35 2 243 313 9 85 6.33e-16 80.9
Msa0027550 MtrunA17_Chr8g0384041 44.928 69 38 0 239 307 8 76 1.05e-15 80.1
Msa0027550 MtrunA17_Chr1g0177271 46.753 77 35 2 243 313 9 85 1.14e-15 80.1
Msa0027550 MtrunA17_Chr1g0177281 46.753 77 35 2 243 313 9 85 1.52e-15 79.7
Msa0027550 MtrunA17_Chr2g0283691 28.723 282 196 5 440 717 86 366 1.57e-15 79.7
Msa0027550 MtrunA17_Chr3g0129811 42.857 70 40 0 240 309 82 151 3.90e-15 79.0
Msa0027550 MtrunA17_Chr2g0322021 47.297 74 35 2 242 311 7 80 4.62e-15 77.8
Msa0027550 MtrunA17_Chr5g0400971 42.529 87 50 0 242 328 68 154 5.26e-15 78.2
Msa0027550 MtrunA17_Chr7g0246731 30.081 246 159 7 480 717 237 477 7.52e-15 78.2
Msa0027550 MtrunA17_Chr1g0196911 34.351 131 77 4 242 368 507 632 1.38e-14 78.2
Msa0027550 MtrunA17_Chr7g0275961 21.807 321 223 8 10 311 14 325 2.05e-14 77.4
Msa0027550 MtrunA17_Chr7g0215741 31.792 173 114 2 469 638 588 759 3.43e-14 76.6
Msa0027550 MtrunA17_Chr7g0215741 26.102 295 163 7 476 716 464 757 1.33e-13 74.7
Msa0027550 MtrunA17_Chr7g0267501 48.649 74 33 4 242 311 9 81 3.71e-14 75.5
Msa0027550 MtrunA17_Chr1g0199031 40.171 117 52 2 517 632 18 117 4.02e-14 69.7
Msa0027550 MtrunA17_Chr1g0177301 45.833 72 37 2 242 311 7 78 9.24e-14 73.9
Msa0027550 MtrunA17_Chr1g0152291 39.080 87 53 0 242 328 46 132 2.06e-13 73.2
Msa0027550 MtrunA17_Chr8g0353271 26.042 288 194 7 440 709 8 294 2.18e-13 72.0
Msa0027550 MtrunA17_Chr4g0025501 43.243 74 39 2 241 311 6 79 2.82e-13 72.4
Msa0027550 MtrunA17_Chr7g0247831 35.514 107 65 3 205 309 790 894 3.08e-13 73.6
Msa0027550 MtrunA17_Chr1g0202971 45.455 66 36 0 242 307 649 714 4.97e-13 72.8
Msa0027550 MtrunA17_Chr8g0390311 38.679 106 59 4 211 311 362 466 2.06e-12 71.2
Msa0027550 MtrunA17_Chr3g0084371 33.333 132 88 0 480 611 297 428 4.46e-12 69.7
Msa0027550 MtrunA17_Chr3g0124431 41.748 103 59 1 622 723 515 617 4.76e-12 70.1
Msa0027550 MtrunA17_Chr1g0159781 30.894 246 150 9 485 719 476 712 5.36e-12 69.7
Msa0027550 MtrunA17_Chr1g0159781 37.079 89 56 0 632 720 502 590 4.77e-11 66.6
Msa0027550 MtrunA17_Chr1g0205751 27.138 269 179 6 399 650 143 411 2.24e-11 67.4
Msa0027550 MtrunA17_Chr8g0346441 22.121 330 225 10 4 311 10 329 3.13e-11 67.0
Msa0027550 MtrunA17_Chr3g0079031 31.148 122 81 3 188 307 675 795 5.34e-11 66.2
Msa0027550 MtrunA17_Chr2g0328101 40.909 66 39 0 242 307 741 806 8.71e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027550 AT3G54790.3 52.865 768 305 10 7 726 2 760 0.0 714
Msa0027550 AT3G54790.1 52.865 768 305 10 7 726 2 760 0.0 714
Msa0027550 AT3G54790.2 52.705 721 284 10 54 726 13 724 0.0 675
Msa0027550 AT5G67340.1 39.972 713 397 7 14 718 13 702 1.55e-163 488
Msa0027550 AT5G67340.2 39.972 713 397 7 14 718 13 702 1.55e-163 488
Msa0027550 AT2G23140.1 36.951 820 398 14 13 716 6 822 2.14e-144 443
Msa0027550 AT2G23140.2 36.951 820 398 14 13 716 3 819 3.83e-144 442
Msa0027550 AT2G23140.4 36.951 820 398 14 13 716 3 819 3.83e-144 442
Msa0027550 AT2G23140.3 67.742 279 90 0 438 716 352 630 1.93e-122 380
Msa0027550 AT2G23140.5 67.742 279 90 0 438 716 352 630 1.93e-122 380
Msa0027550 AT3G01400.1 51.971 279 132 2 440 716 64 342 5.68e-79 257
Msa0027550 AT4G16490.1 50.000 282 138 2 444 722 189 470 1.21e-72 244
Msa0027550 AT5G58680.1 47.059 306 156 4 414 716 39 341 1.35e-71 238
Msa0027550 AT1G71020.2 45.079 315 156 5 402 713 171 471 6.22e-67 229
Msa0027550 AT1G71020.2 31.688 385 227 11 239 612 93 452 6.45e-36 142
Msa0027550 AT1G71020.2 36.527 167 100 5 558 720 231 395 2.50e-14 76.6
Msa0027550 AT1G71020.1 45.079 315 156 5 402 713 319 619 1.98e-65 229
Msa0027550 AT1G71020.1 29.563 389 230 9 239 612 241 600 5.26e-35 141
Msa0027550 AT1G71020.1 36.527 167 100 5 558 720 379 543 4.58e-14 76.3
Msa0027550 AT3G54850.1 48.951 286 145 1 438 722 345 630 1.04e-64 227
Msa0027550 AT3G54850.1 26.227 652 391 16 37 667 35 617 2.21e-46 175
Msa0027550 AT3G46510.1 44.000 300 158 4 431 721 342 640 1.19e-64 227
Msa0027550 AT3G46510.1 26.615 650 393 18 35 640 29 638 1.27e-48 182
Msa0027550 AT1G23030.1 44.964 278 151 1 438 713 331 608 6.75e-64 224
Msa0027550 AT1G23030.1 30.851 376 222 11 239 586 239 604 5.12e-34 138
Msa0027550 AT2G28830.1 43.116 276 154 3 440 712 285 560 5.16e-62 218
Msa0027550 AT2G28830.1 60.000 70 28 0 242 311 185 254 7.43e-23 103
Msa0027550 AT1G24330.1 32.657 493 268 16 236 716 268 708 5.80e-62 222
Msa0027550 AT1G24330.2 32.657 493 268 16 236 716 268 708 5.80e-62 222
Msa0027550 AT5G42340.1 45.055 273 147 3 439 709 380 651 3.03e-52 192
Msa0027550 AT5G42340.1 27.880 599 373 18 36 612 75 636 1.01e-42 165
Msa0027550 AT1G27910.1 31.463 499 267 14 237 721 274 711 2.90e-46 177
Msa0027550 AT1G29340.1 40.210 286 164 7 440 719 408 692 7.61e-38 151
Msa0027550 AT1G29340.1 27.189 434 255 16 242 630 306 723 3.17e-20 96.3
Msa0027550 AT3G07360.5 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.3 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.9 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.6 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.2 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.8 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.10 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.7 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.4 36.749 283 166 8 441 713 37 316 1.25e-37 143
Msa0027550 AT3G07360.1 36.749 283 166 8 441 713 172 451 1.04e-36 144
Msa0027550 AT3G07360.1 27.385 325 210 9 210 526 39 345 7.66e-25 108
Msa0027550 AT1G67530.2 35.000 280 169 7 448 717 434 710 1.42e-32 135
Msa0027550 AT1G67530.2 59.722 72 29 0 242 313 273 344 3.12e-23 105
Msa0027550 AT1G67530.1 35.000 280 169 7 448 717 434 710 1.42e-32 135
Msa0027550 AT1G67530.1 59.722 72 29 0 242 313 273 344 3.12e-23 105
Msa0027550 AT1G67530.4 35.000 280 169 7 448 717 434 710 1.42e-32 135
Msa0027550 AT1G67530.4 59.722 72 29 0 242 313 273 344 3.12e-23 105
Msa0027550 AT4G12710.1 35.816 282 169 7 443 713 50 330 6.12e-31 126
Msa0027550 AT5G62560.1 33.852 257 164 3 462 713 258 513 1.55e-28 121
Msa0027550 AT3G03440.1 30.742 283 186 5 440 714 66 346 1.81e-28 119
Msa0027550 AT5G40140.1 29.749 279 191 3 443 717 233 510 3.85e-28 120
Msa0027550 AT5G65200.1 31.321 265 170 4 462 715 248 511 2.02e-26 114
Msa0027550 AT4G31890.3 31.365 271 172 8 455 713 160 428 1.63e-25 111
Msa0027550 AT4G31890.2 31.365 271 172 8 455 713 160 428 1.63e-25 111
Msa0027550 AT4G31890.1 31.365 271 172 8 455 713 160 428 1.63e-25 111
Msa0027550 AT3G47820.1 33.333 282 175 6 445 714 208 488 2.77e-24 108
Msa0027550 AT4G21350.1 36.364 242 149 3 448 687 104 342 4.60e-24 105
Msa0027550 AT4G21350.1 47.887 71 36 1 238 307 2 72 7.74e-16 80.5
Msa0027550 AT1G67530.3 59.722 72 29 0 242 313 273 344 1.98e-23 105
Msa0027550 AT2G25130.1 30.337 267 169 8 461 713 132 395 2.10e-23 104
Msa0027550 AT5G01830.1 26.633 398 223 10 237 589 270 643 3.72e-23 105
Msa0027550 AT5G01830.1 30.921 304 173 10 436 722 368 651 7.56e-21 98.2
Msa0027550 AT5G14510.1 34.025 241 146 8 484 714 43 280 6.94e-23 100
Msa0027550 AT5G18320.1 33.333 276 170 7 451 713 173 447 4.65e-22 100
Msa0027550 AT5G18320.1 26.648 364 205 10 213 575 45 347 2.75e-20 95.1
Msa0027550 AT1G49780.1 49.351 77 39 0 238 314 11 87 1.91e-20 95.1
Msa0027550 AT3G19380.1 51.282 78 37 1 238 314 11 88 2.58e-19 91.7
Msa0027550 AT2G35930.1 51.389 72 34 1 241 311 12 83 2.31e-18 88.6
Msa0027550 AT1G66160.1 50.000 70 35 0 239 308 31 100 2.57e-18 88.6
Msa0027550 AT5G37490.1 44.872 78 43 0 236 313 26 103 9.84e-18 87.0
Msa0027550 AT1G10560.1 25.797 345 210 12 247 573 294 610 1.05e-17 88.2
Msa0027550 AT1G10560.1 29.352 293 188 8 443 720 393 681 2.06e-17 87.0
Msa0027550 AT3G52450.1 50.000 72 35 1 241 311 7 78 1.17e-17 86.7
Msa0027550 AT1G60190.1 26.549 339 219 11 245 573 282 600 1.31e-17 87.8
Msa0027550 AT1G60190.1 30.588 255 155 9 432 671 372 619 6.24e-17 85.5
Msa0027550 AT1G08315.1 26.460 291 192 7 440 709 9 298 1.35e-17 85.1
Msa0027550 AT5G18340.1 35.507 138 82 3 184 317 15 149 6.84e-17 84.3
Msa0027550 AT5G64660.1 46.377 69 37 0 239 307 8 76 1.93e-16 82.8
Msa0027550 AT5G09800.1 41.975 81 45 1 240 320 10 88 5.94e-16 81.3
Msa0027550 AT3G49810.1 26.525 377 195 12 241 548 64 427 7.91e-16 81.3
Msa0027550 AT3G18710.1 42.254 71 41 0 239 309 10 80 1.60e-15 80.1
Msa0027550 AT4G36550.1 42.667 75 43 0 240 314 218 292 2.38e-15 80.5
Msa0027550 AT2G44900.1 27.797 295 158 8 476 716 475 768 2.49e-15 80.9
Msa0027550 AT2G44900.1 31.792 173 114 2 469 638 599 770 7.52e-14 75.9
Msa0027550 AT2G44900.1 31.771 192 118 3 480 659 390 580 1.28e-12 72.0
Msa0027550 AT2G44900.2 27.797 295 158 8 476 716 475 768 2.49e-15 80.9
Msa0027550 AT2G44900.2 31.792 173 114 2 469 638 599 770 7.52e-14 75.9
Msa0027550 AT2G44900.2 31.771 192 118 3 480 659 390 580 1.28e-12 72.0
Msa0027550 AT5G18330.1 36.697 109 67 2 212 320 37 143 2.63e-15 79.3
Msa0027550 AT1G01660.2 40.476 84 42 1 237 312 486 569 2.87e-15 80.1
Msa0027550 AT1G01660.1 40.476 84 42 1 237 312 485 568 2.94e-15 80.1
Msa0027550 AT5G65920.1 25.926 324 193 8 241 555 60 345 4.05e-15 79.0
Msa0027550 AT5G65920.2 25.926 324 193 8 241 555 60 345 4.05e-15 79.0
Msa0027550 AT3G11840.1 47.368 76 38 2 239 313 8 82 7.91e-15 78.2
Msa0027550 AT1G01680.1 44.776 67 37 0 245 311 237 303 1.52e-14 75.5
Msa0027550 AT2G45920.1 27.746 173 119 3 147 315 229 399 6.59e-14 74.7
Msa0027550 AT3G60350.1 33.333 171 109 3 472 638 592 761 3.15e-13 73.9
Msa0027550 AT3G60350.1 29.268 246 161 5 476 709 466 710 1.43e-12 72.0
Msa0027550 AT3G60350.1 32.331 266 160 8 462 709 362 625 3.10e-12 70.9
Msa0027550 AT3G60350.2 33.333 171 109 3 472 638 592 761 3.15e-13 73.9
Msa0027550 AT3G60350.2 29.268 246 161 5 476 709 466 710 1.43e-12 72.0
Msa0027550 AT3G60350.2 32.331 266 160 8 462 709 362 625 3.10e-12 70.9
Msa0027550 AT3G61390.4 30.114 176 98 6 138 307 188 344 4.65e-13 71.6
Msa0027550 AT3G61390.2 30.114 176 98 6 138 307 263 419 6.49e-13 72.0
Msa0027550 AT2G45910.2 41.429 70 41 0 242 311 764 833 1.03e-12 72.4
Msa0027550 AT2G45910.1 41.429 70 41 0 242 311 764 833 1.03e-12 72.4
Msa0027550 AT5G57035.1 42.424 66 38 0 242 307 709 774 1.64e-12 71.6
Msa0027550 AT2G27430.1 26.280 293 188 5 440 716 79 359 1.66e-11 67.4
Msa0027550 AT1G01670.3 38.571 70 43 0 242 311 211 280 3.59e-11 65.1
Msa0027550 AT2G22125.1 39.806 103 61 1 622 723 513 615 3.67e-11 67.4
Msa0027550 AT1G01670.2 38.571 70 43 0 242 311 295 364 4.01e-11 65.9
Msa0027550 AT1G01670.1 38.571 70 43 0 242 311 295 364 4.01e-11 65.9
Msa0027550 AT1G01830.1 27.551 294 201 7 431 717 203 491 4.36e-11 66.6
Msa0027550 AT1G01830.3 27.551 294 201 7 431 717 203 491 4.36e-11 66.6
Msa0027550 AT1G01830.2 27.551 294 201 7 431 717 203 491 4.36e-11 66.6
Msa0027550 AT5G51270.2 30.168 179 100 8 142 311 642 804 4.83e-11 66.6
Msa0027550 AT5G51270.1 30.168 179 100 8 142 311 642 804 4.83e-11 66.6

Find 196 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTAAATCACTCTATTT+TGG 0.115540 1_1:+51915840 Msa0027550:five_prime_UTR
CATAGCTTTGACAGTATAAT+TGG 0.135710 1_1:-51918847 None:intergenic
AGCTGGAGCTGTCAAATTTC+TGG 0.138706 1_1:+51919763 Msa0027550:CDS
CCTCCTGATTCTATAGATTT+AGG 0.142927 1_1:+51920853 Msa0027550:three_prime_UTR
AAACTTTCACTCATTCTTTA+TGG 0.144726 1_1:+51915863 Msa0027550:five_prime_UTR
GCCCATGATCAAGCCACTTT+TGG 0.245094 1_1:-51918773 None:intergenic
CCATATTATTGCAGATCTTC+TGG 0.260798 1_1:-51917554 None:intergenic
AAATTAAATAAAGGGTTATT+AGG 0.265992 1_1:-51915658 None:intergenic
ACTGCATTTGGGATTGGATT+AGG 0.281089 1_1:-51915524 None:intergenic
CAAATTTCTGGTTGAGTTAA+CGG 0.291686 1_1:+51919775 Msa0027550:CDS
TCACTTCAATTGATTCGTTT+TGG 0.293615 1_1:-51919301 None:intergenic
ACCACCATCTGCATCGGTTT+TGG 0.297018 1_1:+51917897 Msa0027550:CDS
GCCCTCTTGTTTGTAGTTGT+TGG 0.304502 1_1:+51915712 Msa0027550:five_prime_UTR
TGTCTTTAAAACATGGATAA+GGG 0.305967 1_1:-51919534 None:intergenic
CTGTGAATCTTGCTCATCTT+TGG 0.314982 1_1:-51917717 None:intergenic
GTAAGTCTTTGACGAGTCTT+TGG 0.320289 1_1:-51918807 None:intergenic
CTTGCCTCAGGAACACTTAG+AGG 0.322163 1_1:+51919671 Msa0027550:CDS
TTAGTTGAAATTGTTGAATC+AGG 0.322937 1_1:+51919902 Msa0027550:CDS
CTGCATTTGGGATTGGATTA+GGG 0.326683 1_1:-51915523 None:intergenic
TATATGTATATGTAGCATTA+TGG 0.327351 1_1:+51915630 Msa0027550:five_prime_UTR
AGACAACAAGGCCTTGATTA+TGG 0.328758 1_1:+51919493 Msa0027550:CDS
TCACTTCTGCTGTGAATATA+TGG 0.333005 1_1:-51919032 None:intergenic
CCAGAAGATCTGCAATAATA+TGG 0.335837 1_1:+51917554 Msa0027550:CDS
AGGGCATAGGTTTCACTGTT+TGG 0.338516 1_1:-51917530 None:intergenic
TATTGAATGAAGACTGCATT+TGG 0.339616 1_1:-51915536 None:intergenic
AAAGCTCCATGAACAATATA+AGG 0.342283 1_1:-51921162 None:intergenic
GAATATAGCAGCGAAATTAA+AGG 0.345847 1_1:-51919410 None:intergenic
CTTTCGTTGTCCTTTATCAT+TGG 0.349699 1_1:+51918692 Msa0027550:CDS
CTGTCTTTAAAACATGGATA+AGG 0.350895 1_1:-51919535 None:intergenic
TAATGCTACATATACATATA+TGG 0.361950 1_1:-51915627 None:intergenic
CCTCTTCTTTCCTTTCTCTC+AGG 0.364453 1_1:+51915737 Msa0027550:five_prime_UTR
GATGCGGGAGGGATAGAAAA+TGG 0.374443 1_1:+51919158 Msa0027550:CDS
TCTTGAGACACTGAAGTTCC+TGG 0.377501 1_1:-51918377 None:intergenic
AATTATGCCTACATAGTTCC+AGG 0.379327 1_1:+51919966 Msa0027550:CDS
TGCAGATGGTGGTGACTCTA+AGG 0.382186 1_1:-51917887 None:intergenic
TGACCGGAAGCCACAATAAC+AGG 0.383755 1_1:-51918729 None:intergenic
GCCAGTACTCGACGATGTTA+TGG 0.384564 1_1:+51917599 Msa0027550:CDS
ATGTAAAGTATGTGAAGAAT+TGG 0.384663 1_1:+51917650 Msa0027550:CDS
AGTAACTCTGAGCATAATAC+TGG 0.389481 1_1:+51918909 Msa0027550:CDS
AACATGAGTTCCAATGATAA+AGG 0.394131 1_1:-51918702 None:intergenic
TTTCTGTGTTATGCTTTGTA+AGG 0.397583 1_1:-51919352 None:intergenic
GATCCTGTTATTGTGGCTTC+CGG 0.400104 1_1:+51918726 Msa0027550:CDS
TTTATGGTTTGAAGTTGATC+AGG 0.406084 1_1:+51915879 Msa0027550:five_prime_UTR
TTAGTTGCATTATCTCAATC+TGG 0.415822 1_1:+51920028 Msa0027550:CDS
AATGCATTTGAAGAACAAAA+AGG 0.418610 1_1:+51918933 Msa0027550:CDS
ACTAGAAATTGAACTTGAAA+AGG 0.419589 1_1:-51919057 None:intergenic
AGTTTCACAACCATGCATAT+AGG 0.419904 1_1:+51915927 Msa0027550:exon
ACTGAACTGACTTGGGAGTT+GGG 0.420206 1_1:-51921085 None:intergenic
AATCCTAAATCTATAGAATC+AGG 0.421902 1_1:-51920856 None:intergenic
AGATCTGCAATAATATGGTT+GGG 0.424411 1_1:+51917559 Msa0027550:CDS
ACAGAAAACCGTATCATTGT+AGG 0.429397 1_1:+51919368 Msa0027550:CDS
TTCTATCCCTCCCGCATCTA+CGG 0.431968 1_1:-51919153 None:intergenic
ATCATGAAGATAGAAAGTTT+TGG 0.433620 1_1:+51920779 Msa0027550:exon
ATCCAAAAGTGGCTTGATCA+TGG 0.434849 1_1:+51918771 Msa0027550:CDS
CATTTCCTGTCTTTAAAACA+TGG 0.435893 1_1:-51919541 None:intergenic
TCTACTTTGGTGGCTGTACT+CGG 0.438981 1_1:+51920978 Msa0027550:three_prime_UTR
ATTGAATGAAGACTGCATTT+GGG 0.447488 1_1:-51915535 None:intergenic
AGAGACTATTGCTGTGGAAA+AGG 0.448997 1_1:+51918527 Msa0027550:CDS
GCATCCATTGCATTCTCCAT+TGG 0.451047 1_1:-51918973 None:intergenic
CACTGAACTGACTTGGGAGT+TGG 0.454317 1_1:-51921086 None:intergenic
CTACTAGAGCATAACTCATA+TGG 0.456974 1_1:+51921059 Msa0027550:three_prime_UTR
TACATGTATCATTCTGGAAA+CGG 0.460305 1_1:+51920913 Msa0027550:three_prime_UTR
TTTATCATTGGAACTCATGT+TGG 0.461750 1_1:+51918704 Msa0027550:CDS
TTCCCTCCGCAATTGTCGAC+AGG 0.465435 1_1:-51919844 None:intergenic
AAAGATGTATCAAGGGTGTC+TGG 0.466382 1_1:+51919104 Msa0027550:CDS
ATGAAGACTGCATTTGGGAT+TGG 0.467960 1_1:-51915530 None:intergenic
CGCCAATGCTTTAATTGCAC+CGG 0.469718 1_1:-51919642 None:intergenic
AGATTGAGATAATGCAACTA+AGG 0.474539 1_1:-51920026 None:intergenic
TTCACATCTTGTTTCAAACT+CGG 0.478265 1_1:+51919226 Msa0027550:CDS
CCGTTTCAAAAGATGTATCA+AGG 0.481355 1_1:+51919096 Msa0027550:CDS
TCCATAACATCGTCGAGTAC+TGG 0.483296 1_1:-51917600 None:intergenic
TGCAGTCTTCATTCAATACT+AGG 0.484790 1_1:+51915541 Msa0027550:five_prime_UTR
TTGGCGGAACTTCTTGCCTC+AGG 0.485196 1_1:+51919659 Msa0027550:CDS
TCTGTAAAAGCCTGAGAGAA+AGG 0.486938 1_1:-51915747 None:intergenic
CTGAACTGACTTGGGAGTTG+GGG 0.490901 1_1:-51921084 None:intergenic
AGCAATGGTCTATATAGAAA+AGG 0.491210 1_1:+51918407 Msa0027550:CDS
ATAGCTTTGACAGTATAATT+GGG 0.493767 1_1:-51918846 None:intergenic
GAGTACTTTGCAGTCAAAAG+TGG 0.495169 1_1:+51918651 Msa0027550:CDS
TTCCGGTGCAATTAAAGCAT+TGG 0.495853 1_1:+51919640 Msa0027550:CDS
CAGATCTTCTGGAAGGGCAT+AGG 0.495873 1_1:-51917543 None:intergenic
TAAATAAAGGGTTATTAGGT+GGG 0.497122 1_1:-51915654 None:intergenic
TCTATTCAGCCTCTCTGTAA+TGG 0.503208 1_1:+51919592 Msa0027550:CDS
TCACATCTTGTTTCAAACTC+GGG 0.504312 1_1:+51919227 Msa0027550:CDS
AAGATCTGCAATAATATGGT+TGG 0.507887 1_1:+51917558 Msa0027550:CDS
CGGTGCAATTAAAGCATTGG+CGG 0.507977 1_1:+51919643 Msa0027550:CDS
TTAAATAAAGGGTTATTAGG+TGG 0.510389 1_1:-51915655 None:intergenic
TCAACAATTTCAACTAATGA+CGG 0.515732 1_1:-51919896 None:intergenic
TTGTCTCTCGTATGTTTGAC+CGG 0.516665 1_1:-51918745 None:intergenic
TTTCACTTAAACAGGTCAAA+CGG 0.517237 1_1:+51917446 Msa0027550:intron
TTGTCAACCATTCCATCGGC+AGG 0.519613 1_1:-51919800 None:intergenic
AGGAACACTTAGAGGAAAGA+AGG 0.519961 1_1:+51919679 Msa0027550:CDS
TACTCCAAGAGCAAAGGAAA+AGG 0.525058 1_1:+51920051 Msa0027550:CDS
CAACAATTTCAACTAATGAC+GGG 0.525187 1_1:-51919895 None:intergenic
GAAGCAGCTACTACCACAAA+GGG 0.525301 1_1:+51920753 Msa0027550:CDS
CAAGGCCTTGATTATGGAAG+CGG 0.526592 1_1:+51919499 Msa0027550:CDS
AACGGATCCTGCCGATGGAA+TGG 0.527206 1_1:+51919793 Msa0027550:CDS
TTTCGCTGCTATATTCAGAC+GGG 0.527949 1_1:+51919417 Msa0027550:CDS
TCCAAAAGTGGCTTGATCAT+GGG 0.528426 1_1:+51918772 Msa0027550:CDS
AAGGCCTTGATTATGGAAGC+GGG 0.532774 1_1:+51919500 Msa0027550:CDS
ATATATGCACTGAACTGACT+TGG 0.533823 1_1:-51921093 None:intergenic
GATAAAGGACAACGAAAGTA+CGG 0.534573 1_1:-51918687 None:intergenic
TGTCGACAGGTTTGACAGAA+CGG 0.535793 1_1:-51919831 None:intergenic
AGAATATAGAAATAGAAAAG+TGG 0.536189 1_1:+51918997 Msa0027550:CDS
CATGTTGGATCCTGTTATTG+TGG 0.537393 1_1:+51918719 Msa0027550:CDS
TAAAACCAGTGTACAAAACC+TGG 0.538109 1_1:-51919984 None:intergenic
ATGAAATGAAGTGAAGAATG+AGG 0.538292 1_1:+51915789 Msa0027550:five_prime_UTR
ATCATTATAGAAAATTACTT+AGG 0.540893 1_1:-51920827 None:intergenic
CGTATCATTGTAGGGCAGTG+TGG 0.543384 1_1:+51919377 Msa0027550:CDS
ACATAAAATGAAAAGCGACT+TGG 0.550069 1_1:+51918569 Msa0027550:CDS
GTATCATTGTAGGGCAGTGT+GGG 0.550685 1_1:+51919378 Msa0027550:CDS
AGCTGCCGCAGAATTCTCCT+TGG 0.550863 1_1:-51919570 None:intergenic
CTCAGAGTTACTAGAACGGT+TGG 0.551734 1_1:-51918898 None:intergenic
ACCTTGCAAGGAAAATCTAA+AGG 0.552613 1_1:+51918458 Msa0027550:CDS
GTCTTTAAAACATGGATAAG+GGG 0.554803 1_1:-51919533 None:intergenic
AAGGTGTCGTCCGTAGATGC+GGG 0.555598 1_1:+51919143 Msa0027550:CDS
CACACTGCCCTACAATGATA+CGG 0.556153 1_1:-51919376 None:intergenic
ATTTCGCTGCTATATTCAGA+CGG 0.556954 1_1:+51919416 Msa0027550:CDS
AGATGATACTGAACCTTGCA+AGG 0.558284 1_1:+51918446 Msa0027550:CDS
AAAGCTCGAATAGTTCAAGC+TGG 0.558721 1_1:+51919746 Msa0027550:CDS
TACAAAACCTGGAACTATGT+AGG 0.558754 1_1:-51919973 None:intergenic
AGAGACAATCCATCCAAAAG+TGG 0.560254 1_1:+51918760 Msa0027550:CDS
TTGGTGGCTGTACTCGGAGG+AGG 0.562505 1_1:+51920984 Msa0027550:three_prime_UTR
AAATTACTTAGGCTAGGAGA+AGG 0.563697 1_1:-51920816 None:intergenic
TGTTGAATCAGGTTCTCAGA+GGG 0.564013 1_1:+51919913 Msa0027550:CDS
CTTTCCTCTAAGTGTTCCTG+AGG 0.564605 1_1:-51919675 None:intergenic
GAATATAGAAATAGAAAAGT+GGG 0.566712 1_1:+51918998 Msa0027550:CDS
GAAGGTGTCGTCCGTAGATG+CGG 0.567749 1_1:+51919142 Msa0027550:CDS
TAGTTTCTGAAGCTTTAGCT+TGG 0.570792 1_1:+51921012 Msa0027550:three_prime_UTR
TATAGAAAATTACTTAGGCT+AGG 0.570990 1_1:-51920822 None:intergenic
GGCCTTGATTATGGAAGCGG+GGG 0.573918 1_1:+51919502 Msa0027550:CDS
CAGAAAACCGTATCATTGTA+GGG 0.574472 1_1:+51919369 Msa0027550:CDS
GACAGGAAATGATGGTGCCA+AGG 0.574539 1_1:+51919553 Msa0027550:CDS
TATTCTCATGAAATATTGAG+AGG 0.577297 1_1:-51919724 None:intergenic
AAGGAAAGATTGAACGCTGA+AGG 0.579752 1_1:+51918546 Msa0027550:CDS
TATATGCACTGAACTGACTT+GGG 0.580003 1_1:-51921092 None:intergenic
ATGCTTTAATTGCACCGGAA+CGG 0.580585 1_1:-51919637 None:intergenic
CAATACTAGGCATCTCATAA+CGG 0.583764 1_1:+51915554 Msa0027550:five_prime_UTR
AGGTTAGAAATTGCAAGAGA+AGG 0.585061 1_1:+51919866 Msa0027550:CDS
GATCTGCAATAATATGGTTG+GGG 0.585533 1_1:+51917560 Msa0027550:CDS
GTCAAACCTGTCGACAATTG+CGG 0.586932 1_1:+51919838 Msa0027550:CDS
ATCTGGTACTCCAAGAGCAA+AGG 0.587517 1_1:+51920045 Msa0027550:CDS
ATTATTGCAGATCTTCTGGA+AGG 0.589284 1_1:-51917550 None:intergenic
AGAGTCACCACCATCTGCAT+CGG 0.589320 1_1:+51917891 Msa0027550:CDS
AGCCTCTCTGTAATGGAGAA+CGG 0.590485 1_1:+51919599 Msa0027550:CDS
AGATCCAATGGAGAATGCAA+TGG 0.591622 1_1:+51918969 Msa0027550:CDS
ACTTAAATTGACATCAACTC+AGG 0.593345 1_1:+51918494 Msa0027550:CDS
AATTAAAAGAATGAAATGAA+AGG 0.593597 1_1:-51920887 None:intergenic
AGCCTTGTCAACCATTCCAT+CGG 0.599214 1_1:-51919804 None:intergenic
TTAGAAATTGCAAGAGAAGG+TGG 0.599313 1_1:+51919869 Msa0027550:CDS
GGAACTTCAGTGTCTCAAGA+AGG 0.599469 1_1:+51918380 Msa0027550:CDS
ATCAGGTTCTCAGAGGGGAA+AGG 0.606091 1_1:+51919919 Msa0027550:CDS
AATTACTTAGGCTAGGAGAA+GGG 0.608524 1_1:-51920815 None:intergenic
GAGTTAACGGATCCTGCCGA+TGG 0.609363 1_1:+51919788 Msa0027550:CDS
CTGAGAGAAAGGAAAGAAGA+GGG 0.609919 1_1:-51915736 None:intergenic
TGTCGACAATTGCGGAGGGA+AGG 0.610973 1_1:+51919846 Msa0027550:CDS
GATATCTCTTTCAGATCCAA+TGG 0.611138 1_1:+51918957 Msa0027550:CDS
GATTGAGATAATGCAACTAA+GGG 0.611793 1_1:-51920025 None:intergenic
CTTGAAAGAGACTATTGCTG+TGG 0.614279 1_1:+51918521 Msa0027550:CDS
TTATTGCAGATCTTCTGGAA+GGG 0.616400 1_1:-51917549 None:intergenic
TCAAAGCTATGATAGCAACT+TGG 0.617844 1_1:+51918859 Msa0027550:CDS
ATCAATTAATGAAGACAACA+AGG 0.618009 1_1:+51919481 Msa0027550:CDS
CCTGAGAGAAAGGAAAGAAG+AGG 0.618981 1_1:-51915737 None:intergenic
CGTTTCAAAAGATGTATCAA+GGG 0.621464 1_1:+51919097 Msa0027550:CDS
ATATGCGTGTTAACGAAGCA+AGG 0.624151 1_1:+51917673 Msa0027550:CDS
GTCCAACAACTACAAACAAG+AGG 0.624311 1_1:-51915714 None:intergenic
TTAGCCAAAACCGATGCAGA+TGG 0.627265 1_1:-51917901 None:intergenic
TGAACTGACTTGGGAGTTGG+GGG 0.627771 1_1:-51921083 None:intergenic
CAATTTATTGACATGAGACG+AGG 0.630618 1_1:-51919267 None:intergenic
TATGATAGCAACTTGGTGTG+AGG 0.634224 1_1:+51918866 Msa0027550:CDS
GTGTCGTCCGTAGATGCGGG+AGG 0.637385 1_1:+51919146 Msa0027550:CDS
GCCAAAACCGATGCAGATGG+TGG 0.638983 1_1:-51917898 None:intergenic
AAACCTGTCGACAATTGCGG+AGG 0.639239 1_1:+51919841 Msa0027550:CDS
TGAGATAATGCAACTAAGGG+AGG 0.643063 1_1:-51920022 None:intergenic
TATGCGTGTTAACGAAGCAA+GGG 0.643177 1_1:+51917674 Msa0027550:CDS
TCTCAAGAAGGAAACAGCAA+TGG 0.643563 1_1:+51918392 Msa0027550:CDS
AGGCCTTGATTATGGAAGCG+GGG 0.646219 1_1:+51919501 Msa0027550:CDS
AACCTGTCGACAATTGCGGA+GGG 0.649763 1_1:+51919842 Msa0027550:CDS
TATCATTGTAGGGCAGTGTG+GGG 0.649782 1_1:+51919379 Msa0027550:CDS
CCTAAATCTATAGAATCAGG+AGG 0.654143 1_1:-51920853 None:intergenic
GGAAGCAGCTACTACCACAA+AGG 0.655836 1_1:+51920752 Msa0027550:CDS
TTTATTGACATGAGACGAGG+TGG 0.656546 1_1:-51919264 None:intergenic
TACCGTTCTCCATTACAGAG+AGG 0.659126 1_1:-51919601 None:intergenic
TGTCGTCCGTAGATGCGGGA+GGG 0.663917 1_1:+51919147 Msa0027550:CDS
TCCAACAACTACAAACAAGA+GGG 0.664710 1_1:-51915713 None:intergenic
TTGTTGAATCAGGTTCTCAG+AGG 0.664892 1_1:+51919912 Msa0027550:CDS
AAGGACAACGAAAGTACGGA+GGG 0.665746 1_1:-51918683 None:intergenic
GTTGAATCAGGTTCTCAGAG+GGG 0.666113 1_1:+51919914 Msa0027550:CDS
CTACTGCTGCAGAAGAACTG+AGG 0.670399 1_1:+51919327 Msa0027550:CDS
ACTTTGGTGGCTGTACTCGG+AGG 0.672026 1_1:+51920981 Msa0027550:three_prime_UTR
GAGGTTATATAAAGCAGTAG+CGG 0.675036 1_1:-51919705 None:intergenic
TATGCTCAGAGTTACTAGAA+CGG 0.677978 1_1:-51918902 None:intergenic
TGCCGATGGAATGGTTGACA+AGG 0.680641 1_1:+51919802 Msa0027550:CDS
AAAGGACAACGAAAGTACGG+AGG 0.702184 1_1:-51918684 None:intergenic
TGGTGCCAAGGAGAATTCTG+CGG 0.713773 1_1:+51919565 Msa0027550:CDS
TCACATAATCACGTAAGACG+CGG 0.714629 1_1:-51918620 None:intergenic
TGGTAAGTATCAAATTACGA+AGG 0.715980 1_1:+51919124 Msa0027550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATTAAATAAA+GGG - chr1_1:51915669-51915688 None:intergenic 0.0%
!! AAAAATAAAAAATTAAATAA+AGG - chr1_1:51915670-51915689 None:intergenic 0.0%
!! AAATTAAATAAAGGGTTATT+AGG - chr1_1:51915661-51915680 None:intergenic 15.0%
!!! TTTTGTTTTTGCTTAAAAAA+TGG + chr1_1:51915988-51916007 Msa0027550:intron 15.0%
!! TAAATCAAAAACAAAAAACA+TGG - chr1_1:51916039-51916058 None:intergenic 15.0%
!!! GTTTTTTGTTTTTGATTTAT+AGG + chr1_1:51916040-51916059 Msa0027550:intron 15.0%
!! AAGTAGTAAAAAAATATTAG+TGG - chr1_1:51916388-51916407 None:intergenic 15.0%
!!! TTTTATATGTCATTTTCATT+GGG + chr1_1:51916449-51916468 Msa0027550:intron 15.0%
!! GTTATAAAAAATCAAACAAA+GGG - chr1_1:51916559-51916578 None:intergenic 15.0%
!! TTAAAAAATGAGTTTATATG+TGG + chr1_1:51917011-51917030 Msa0027550:intron 15.0%
!! TAAAAAATGAGTTTATATGT+GGG + chr1_1:51917012-51917031 Msa0027550:intron 15.0%
!! GAATTATTGTAAATGAATAT+AGG + chr1_1:51917329-51917348 Msa0027550:intron 15.0%
!!! TTACATAAATTTTGATGTAA+AGG - chr1_1:51917636-51917655 None:intergenic 15.0%
!! TTCTTTCTTAAAATATGAAT+TGG - chr1_1:51920423-51920442 None:intergenic 15.0%
!!! ATTTTAAGAAAGAAAAACAA+AGG + chr1_1:51920429-51920448 Msa0027550:intron 15.0%
!!! TTTTAAGAAAGAAAAACAAA+GGG + chr1_1:51920430-51920449 Msa0027550:intron 15.0%
!! ATCATTATAGAAAATTACTT+AGG - chr1_1:51920830-51920849 None:intergenic 15.0%
!! AATTAAAAGAATGAAATGAA+AGG - chr1_1:51920890-51920909 None:intergenic 15.0%
!! TAATGCTACATATACATATA+TGG - chr1_1:51915630-51915649 None:intergenic 20.0%
!! TATATGTATATGTAGCATTA+TGG + chr1_1:51915630-51915649 Msa0027550:five_prime_UTR 20.0%
!!! ATTCTTAAATCACTCTATTT+TGG + chr1_1:51915840-51915859 Msa0027550:five_prime_UTR 20.0%
!!! TTTTGTTTTTGATTTATAGG+TGG + chr1_1:51916043-51916062 Msa0027550:intron 20.0%
!!! CAGATTTTAAGTATAAATGA+TGG - chr1_1:51916085-51916104 None:intergenic 20.0%
!!! TTAAAATCTGAACTTTTTGT+TGG + chr1_1:51916095-51916114 Msa0027550:intron 20.0%
!!! TAAAATCTGAACTTTTTGTT+GGG + chr1_1:51916096-51916115 Msa0027550:intron 20.0%
!!! AACTTATACATTTACCATTT+TGG + chr1_1:51916235-51916254 Msa0027550:intron 20.0%
!!! TTGAATTATGTTGATTTAAG+TGG + chr1_1:51916347-51916366 Msa0027550:intron 20.0%
!!! GTTTTATATGTCATTTTCAT+TGG + chr1_1:51916448-51916467 Msa0027550:intron 20.0%
!!! TTTATATGTCATTTTCATTG+GGG + chr1_1:51916450-51916469 Msa0027550:intron 20.0%
!! GGTTATAAAAAATCAAACAA+AGG - chr1_1:51916560-51916579 None:intergenic 20.0%
!! TCTTAATATGTGTTTATAAG+TGG + chr1_1:51916623-51916642 Msa0027550:intron 20.0%
!! CTTAATATGTGTTTATAAGT+GGG + chr1_1:51916624-51916643 Msa0027550:intron 20.0%
!! AATGAATATAGGACTAAATA+AGG + chr1_1:51917340-51917359 Msa0027550:intron 20.0%
!! CAACTTGTATTTAAATACTA+TGG - chr1_1:51918044-51918063 None:intergenic 20.0%
!!! ATATCTTTATTCTTTTGAAC+TGG + chr1_1:51918188-51918207 Msa0027550:intron 20.0%
!!! TATCTTTATTCTTTTGAACT+GGG + chr1_1:51918189-51918208 Msa0027550:intron 20.0%
!!! ACTTTTCTATTTCTATATTC+TGG - chr1_1:51918998-51919017 None:intergenic 20.0%
!! AGAATATAGAAATAGAAAAG+TGG + chr1_1:51918997-51919016 Msa0027550:CDS 20.0%
!! GAATATAGAAATAGAAAAGT+GGG + chr1_1:51918998-51919017 Msa0027550:CDS 20.0%
!!! ATTTTTTACATGTATCATTC+TGG + chr1_1:51920907-51920926 Msa0027550:three_prime_UTR 20.0%
!!! CTTTAATTTTCTTTCTACTT+TGG + chr1_1:51920965-51920984 Msa0027550:three_prime_UTR 20.0%
! TAAATAAAGGGTTATTAGGT+GGG - chr1_1:51915657-51915676 None:intergenic 25.0%
! TTAAATAAAGGGTTATTAGG+TGG - chr1_1:51915658-51915677 None:intergenic 25.0%
! AAACTTTCACTCATTCTTTA+TGG + chr1_1:51915863-51915882 Msa0027550:five_prime_UTR 25.0%
!! AAATGATGGAAGAAAATGAA+TGG - chr1_1:51916071-51916090 None:intergenic 25.0%
!!! ACATTTACCATTTTGGTTTT+TGG + chr1_1:51916242-51916261 Msa0027550:intron 25.0%
!!! CATTTACCATTTTGGTTTTT+GGG + chr1_1:51916243-51916262 Msa0027550:intron 25.0%
!!! ATTTACCATTTTGGTTTTTG+GGG + chr1_1:51916244-51916263 Msa0027550:intron 25.0%
!!! TAGGAATGTTTTGTTTATTG+TGG + chr1_1:51916310-51916329 Msa0027550:intron 25.0%
! ATAAAAAATCAAACAAAGGG+TGG - chr1_1:51916556-51916575 None:intergenic 25.0%
! AAAACCAGATTGTAAAGTAA+GGG - chr1_1:51916656-51916675 None:intergenic 25.0%
! TAAAACCAGATTGTAAAGTA+AGG - chr1_1:51916657-51916676 None:intergenic 25.0%
!!! TACTTTACAATCTGGTTTTA+TGG + chr1_1:51916657-51916676 Msa0027550:intron 25.0%
!!! ACTTTACAATCTGGTTTTAT+GGG + chr1_1:51916658-51916677 Msa0027550:intron 25.0%
! TATCATCTTAGAATTTGCAT+TGG - chr1_1:51916769-51916788 None:intergenic 25.0%
! GCAAGATGTTCTTAAAATTT+GGG - chr1_1:51916921-51916940 None:intergenic 25.0%
! AGCAAGATGTTCTTAAAATT+TGG - chr1_1:51916922-51916941 None:intergenic 25.0%
! ATAAGTTCTTAGAATAGGTT+GGG - chr1_1:51917081-51917100 None:intergenic 25.0%
! AATAAGTTCTTAGAATAGGT+TGG - chr1_1:51917082-51917101 None:intergenic 25.0%
! GAAGAATAAGTTCTTAGAAT+AGG - chr1_1:51917086-51917105 None:intergenic 25.0%
! ATTATAAACCAAAGGTAGAT+AGG - chr1_1:51917125-51917144 None:intergenic 25.0%
! CCAATAGTATTATAAACCAA+AGG - chr1_1:51917133-51917152 None:intergenic 25.0%
!! CCTTTGGTTTATAATACTAT+TGG + chr1_1:51917130-51917149 Msa0027550:intron 25.0%
!! ATAATGATTTTGCCATGAAT+TGG + chr1_1:51917297-51917316 Msa0027550:intron 25.0%
! TTCAATGTAATTCCAATTCA+TGG - chr1_1:51917312-51917331 None:intergenic 25.0%
! AAGCAATATATGATTTACTG+GGG - chr1_1:51917390-51917409 None:intergenic 25.0%
! GAAGCAATATATGATTTACT+GGG - chr1_1:51917391-51917410 None:intergenic 25.0%
! TGAAGCAATATATGATTTAC+TGG - chr1_1:51917392-51917411 None:intergenic 25.0%
! ATGTAAAGTATGTGAAGAAT+TGG + chr1_1:51917650-51917669 Msa0027550:CDS 25.0%
! AAGGGATTTCATTGAAAAAT+GGG + chr1_1:51917692-51917711 Msa0027550:CDS 25.0%
! AATTGCATCCTGATAAAATT+AGG + chr1_1:51918258-51918277 Msa0027550:intron 25.0%
!! TTTATGCTCCTAATTTTATC+AGG - chr1_1:51918269-51918288 None:intergenic 25.0%
!! ATTAGGAGCATAAAGTATTA+TGG + chr1_1:51918275-51918294 Msa0027550:intron 25.0%
!!! ATAGCTTTGACAGTATAATT+GGG - chr1_1:51918849-51918868 None:intergenic 25.0%
! AATGCATTTGAAGAACAAAA+AGG + chr1_1:51918933-51918952 Msa0027550:CDS 25.0%
! ACTAGAAATTGAACTTGAAA+AGG - chr1_1:51919060-51919079 None:intergenic 25.0%
! ATCAATTAATGAAGACAACA+AGG + chr1_1:51919481-51919500 Msa0027550:CDS 25.0%
!!! TGTCTTTAAAACATGGATAA+GGG - chr1_1:51919537-51919556 None:intergenic 25.0%
! TATTCTCATGAAATATTGAG+AGG - chr1_1:51919727-51919746 None:intergenic 25.0%
! TCAACAATTTCAACTAATGA+CGG - chr1_1:51919899-51919918 None:intergenic 25.0%
! TTAGTTGAAATTGTTGAATC+AGG + chr1_1:51919902-51919921 Msa0027550:CDS 25.0%
! AAGTAAAGGAATGAATTGTT+AGG - chr1_1:51920525-51920544 None:intergenic 25.0%
!! ATCATGAAGATAGAAAGTTT+TGG + chr1_1:51920779-51920798 Msa0027550:exon 25.0%
! TATAGAAAATTACTTAGGCT+AGG - chr1_1:51920825-51920844 None:intergenic 25.0%
! AATCCTAAATCTATAGAATC+AGG - chr1_1:51920859-51920878 None:intergenic 25.0%
!!! TATCTTAGTGGTTTTTTGTA+CGG + chr1_1:51920941-51920960 Msa0027550:three_prime_UTR 25.0%
!! TAATTTTCTTTCTACTTTGG+TGG + chr1_1:51920968-51920987 Msa0027550:three_prime_UTR 25.0%
ATTGAATGAAGACTGCATTT+GGG - chr1_1:51915538-51915557 None:intergenic 30.0%
TATTGAATGAAGACTGCATT+TGG - chr1_1:51915539-51915558 None:intergenic 30.0%
ATGAAATGAAGTGAAGAATG+AGG + chr1_1:51915789-51915808 Msa0027550:five_prime_UTR 30.0%
! TTTATGGTTTGAAGTTGATC+AGG + chr1_1:51915879-51915898 Msa0027550:five_prime_UTR 30.0%
! ATTTTGCATACCTATATGCA+TGG - chr1_1:51915940-51915959 None:intergenic 30.0%
!! GTTGTTTCTGTGGAAAATTT+GGG + chr1_1:51916118-51916137 Msa0027550:intron 30.0%
ATGAAAGCTATTTGTCAAGT+TGG + chr1_1:51916164-51916183 Msa0027550:intron 30.0%
!! GTTGATTGCTATTGATTTGT+TGG + chr1_1:51916201-51916220 Msa0027550:intron 30.0%
!! TTGCTATTGATTTGTTGGAT+TGG + chr1_1:51916206-51916225 Msa0027550:intron 30.0%
AAGGGATGTTGAATTTGATT+AGG + chr1_1:51916291-51916310 Msa0027550:intron 30.0%
! ACAGAAGAAGAAAGAACTTT+TGG - chr1_1:51916416-51916435 None:intergenic 30.0%
AAAAGTTCTTTCTTCTTCTG+TGG + chr1_1:51916415-51916434 Msa0027550:intron 30.0%
ATATGTCAACACAAAAGGTA+AGG + chr1_1:51916481-51916500 Msa0027550:intron 30.0%
CTAGCACAAAATTACAAAAG+AGG - chr1_1:51916581-51916600 None:intergenic 30.0%
AATATGTGTTTATAAGTGGG+AGG + chr1_1:51916627-51916646 Msa0027550:intron 30.0%
!!! CTTTACAATCTGGTTTTATG+GGG + chr1_1:51916659-51916678 Msa0027550:intron 30.0%
!!! TTTGGATTTTAGAATCCGAA+CGG - chr1_1:51916693-51916712 None:intergenic 30.0%
!! TTCTAAAATCCAAACTGCAT+AGG + chr1_1:51916699-51916718 Msa0027550:intron 30.0%
! TCTAAAATCCAAACTGCATA+GGG + chr1_1:51916700-51916719 Msa0027550:intron 30.0%
TGGTTTAATAGAGTTGAGTA+AGG + chr1_1:51916742-51916761 Msa0027550:intron 30.0%
AAAATGAGTTTATATGTGGG+AGG + chr1_1:51917015-51917034 Msa0027550:intron 30.0%
!!! GTACATTTCCTTTTTAAGTG+CGG + chr1_1:51917175-51917194 Msa0027550:intron 30.0%
TTTGAAAACCGCACTTAAAA+AGG - chr1_1:51917186-51917205 None:intergenic 30.0%
ATATATGATTTACTGGGGAA+TGG - chr1_1:51917385-51917404 None:intergenic 30.0%
TTTCACTTAAACAGGTCAAA+CGG + chr1_1:51917446-51917465 Msa0027550:intron 30.0%
AAGATCTGCAATAATATGGT+TGG + chr1_1:51917558-51917577 Msa0027550:CDS 30.0%
AGATCTGCAATAATATGGTT+GGG + chr1_1:51917559-51917578 Msa0027550:CDS 30.0%
CAAGGGATTTCATTGAAAAA+TGG + chr1_1:51917691-51917710 Msa0027550:CDS 30.0%
AGGGATTTCATTGAAAAATG+GGG + chr1_1:51917693-51917712 Msa0027550:CDS 30.0%
AGTCAAACTAAGTATTCTGT+TGG + chr1_1:51917773-51917792 Msa0027550:intron 30.0%
! TTGGAATCATTCCTATTTTC+AGG + chr1_1:51917792-51917811 Msa0027550:intron 30.0%
ACTTTGTAGAACCTGAAAAT+AGG - chr1_1:51917806-51917825 None:intergenic 30.0%
!!! TATTTTCAGGTTCTACAAAG+TGG + chr1_1:51917805-51917824 Msa0027550:intron 30.0%
TAGGGGTAATTGTTGTAATA+TGG + chr1_1:51918017-51918036 Msa0027550:intron 30.0%
! TTATTCTTTTGAACTGGGAT+TGG + chr1_1:51918194-51918213 Msa0027550:intron 30.0%
AGCAATGGTCTATATAGAAA+AGG + chr1_1:51918407-51918426 Msa0027550:CDS 30.0%
ACTTAAATTGACATCAACTC+AGG + chr1_1:51918494-51918513 Msa0027550:CDS 30.0%
ACATAAAATGAAAAGCGACT+TGG + chr1_1:51918569-51918588 Msa0027550:CDS 30.0%
AACATGAGTTCCAATGATAA+AGG - chr1_1:51918705-51918724 None:intergenic 30.0%
TTTATCATTGGAACTCATGT+TGG + chr1_1:51918704-51918723 Msa0027550:CDS 30.0%
!! CATAGCTTTGACAGTATAAT+TGG - chr1_1:51918850-51918869 None:intergenic 30.0%
!! CCTTGATACATCTTTTGAAA+CGG - chr1_1:51919099-51919118 None:intergenic 30.0%
CGTTTCAAAAGATGTATCAA+GGG + chr1_1:51919097-51919116 Msa0027550:CDS 30.0%
TGGTAAGTATCAAATTACGA+AGG + chr1_1:51919124-51919143 Msa0027550:CDS 30.0%
! TTCACATCTTGTTTCAAACT+CGG + chr1_1:51919226-51919245 Msa0027550:CDS 30.0%
!!! TCACTTCAATTGATTCGTTT+TGG - chr1_1:51919304-51919323 None:intergenic 30.0%
TTTCTGTGTTATGCTTTGTA+AGG - chr1_1:51919355-51919374 None:intergenic 30.0%
GAATATAGCAGCGAAATTAA+AGG - chr1_1:51919413-51919432 None:intergenic 30.0%
!! GTCTTTAAAACATGGATAAG+GGG - chr1_1:51919536-51919555 None:intergenic 30.0%
!! CTGTCTTTAAAACATGGATA+AGG - chr1_1:51919538-51919557 None:intergenic 30.0%
!!! CTTATCCATGTTTTAAAGAC+AGG + chr1_1:51919536-51919555 Msa0027550:CDS 30.0%
!! CATTTCCTGTCTTTAAAACA+TGG - chr1_1:51919544-51919563 None:intergenic 30.0%
!!! GTTTTAAAGACAGGAAATGA+TGG + chr1_1:51919545-51919564 Msa0027550:CDS 30.0%
!! CAAATTTCTGGTTGAGTTAA+CGG + chr1_1:51919775-51919794 Msa0027550:CDS 30.0%
CAACAATTTCAACTAATGAC+GGG - chr1_1:51919898-51919917 None:intergenic 30.0%
GATTGAGATAATGCAACTAA+GGG - chr1_1:51920028-51920047 None:intergenic 30.0%
AGATTGAGATAATGCAACTA+AGG - chr1_1:51920029-51920048 None:intergenic 30.0%
TTAGTTGCATTATCTCAATC+TGG + chr1_1:51920028-51920047 Msa0027550:CDS 30.0%
TAATTGAATGTTACCACATG+TGG + chr1_1:51920238-51920257 Msa0027550:intron 30.0%
! CCACTTATAAACTCATTTTC+GGG - chr1_1:51920353-51920372 None:intergenic 30.0%
! CCCACTTATAAACTCATTTT+CGG - chr1_1:51920354-51920373 None:intergenic 30.0%
CCGAAAATGAGTTTATAAGT+GGG + chr1_1:51920351-51920370 Msa0027550:intron 30.0%
AAAATGAGTTTATAAGTGGG+AGG + chr1_1:51920354-51920373 Msa0027550:intron 30.0%
!!! ACCTAAAAAACTGGTTTTGT+AGG + chr1_1:51920385-51920404 Msa0027550:intron 30.0%
!!! CCTAAAAAACTGGTTTTGTA+GGG + chr1_1:51920386-51920405 Msa0027550:intron 30.0%
AATGACTTCACTAGTAGTAT+AGG - chr1_1:51920464-51920483 None:intergenic 30.0%
!! TACAATACTTTTGGGAAAAG+GGG - chr1_1:51920554-51920573 None:intergenic 30.0%
!! CTACAATACTTTTGGGAAAA+GGG - chr1_1:51920555-51920574 None:intergenic 30.0%
!! TCTACAATACTTTTGGGAAA+AGG - chr1_1:51920556-51920575 None:intergenic 30.0%
!! TTTCCCAAAAGTATTGTAGA+AGG + chr1_1:51920556-51920575 Msa0027550:intron 30.0%
! CTTCCTTCTACAATACTTTT+GGG - chr1_1:51920562-51920581 None:intergenic 30.0%
! ACTTCCTTCTACAATACTTT+TGG - chr1_1:51920563-51920582 None:intergenic 30.0%
TAAACATAACTCCAGACAAA+AGG - chr1_1:51920592-51920611 None:intergenic 30.0%
!! TCAGTCATTTTCGTAATCAA+CGG + chr1_1:51920730-51920749 Msa0027550:CDS 30.0%
! TACATGTATCATTCTGGAAA+CGG + chr1_1:51920913-51920932 Msa0027550:three_prime_UTR 30.0%
!!! GAAACGGTTTTTTATCTTAG+TGG + chr1_1:51920929-51920948 Msa0027550:three_prime_UTR 30.0%
!!! ATCTTAGTGGTTTTTTGTAC+GGG + chr1_1:51920942-51920961 Msa0027550:three_prime_UTR 30.0%
TGCAGTCTTCATTCAATACT+AGG + chr1_1:51915541-51915560 Msa0027550:five_prime_UTR 35.0%
CAATACTAGGCATCTCATAA+CGG + chr1_1:51915554-51915573 Msa0027550:five_prime_UTR 35.0%
TCCAACAACTACAAACAAGA+GGG - chr1_1:51915716-51915735 None:intergenic 35.0%
! GCTTTTACAGACAACTTTGT+TGG + chr1_1:51915759-51915778 Msa0027550:five_prime_UTR 35.0%
! AGGATCTGTTTTACTTGTGT+CGG + chr1_1:51915899-51915918 Msa0027550:five_prime_UTR 35.0%
AGTTTCACAACCATGCATAT+AGG + chr1_1:51915927-51915946 Msa0027550:exon 35.0%
!!! TTTTTGTTGGGTTGTTTCTG+TGG + chr1_1:51916108-51916127 Msa0027550:intron 35.0%
!! GGTTGTTTCTGTGGAAAATT+TGG + chr1_1:51916117-51916136 Msa0027550:intron 35.0%
TTTCACCCCAAAAACCAAAA+TGG - chr1_1:51916252-51916271 None:intergenic 35.0%
!!! ATGTCATTTTCATTGGGGTT+AGG + chr1_1:51916455-51916474 Msa0027550:intron 35.0%
GGCATATATGTCAACACAAA+AGG + chr1_1:51916476-51916495 Msa0027550:intron 35.0%
AGAGCTATCCAAGATCTATT+AGG + chr1_1:51916791-51916810 Msa0027550:intron 35.0%
GTAGTTAAGAGGTTCTCATT+CGG + chr1_1:51916880-51916899 Msa0027550:intron 35.0%
AACATTATCTCATCCGATGT+GGG - chr1_1:51916992-51917011 None:intergenic 35.0%
AAACATTATCTCATCCGATG+TGG - chr1_1:51916993-51917012 None:intergenic 35.0%
ATAAACCAAAGGTAGATAGG+TGG - chr1_1:51917122-51917141 None:intergenic 35.0%
! TTATTGCAGATCTTCTGGAA+GGG - chr1_1:51917552-51917571 None:intergenic 35.0%
ATTATTGCAGATCTTCTGGA+AGG - chr1_1:51917553-51917572 None:intergenic 35.0%
CCATATTATTGCAGATCTTC+TGG - chr1_1:51917557-51917576 None:intergenic 35.0%
CCAGAAGATCTGCAATAATA+TGG + chr1_1:51917554-51917573 Msa0027550:CDS 35.0%
GATCTGCAATAATATGGTTG+GGG + chr1_1:51917560-51917579 Msa0027550:CDS 35.0%
ATACTCAACAGAAGCGATTA+AGG - chr1_1:51917959-51917978 None:intergenic 35.0%
ACAGATAAACACACGATGTT+TGG - chr1_1:51918158-51918177 None:intergenic 35.0%
ACCTTGCAAGGAAAATCTAA+AGG + chr1_1:51918458-51918477 Msa0027550:CDS 35.0%
! TCCTTTAGATTTTCCTTGCA+AGG - chr1_1:51918462-51918481 None:intergenic 35.0%
GATAAAGGACAACGAAAGTA+CGG - chr1_1:51918690-51918709 None:intergenic 35.0%
CTTTCGTTGTCCTTTATCAT+TGG + chr1_1:51918692-51918711 Msa0027550:CDS 35.0%
TCAAAGCTATGATAGCAACT+TGG + chr1_1:51918859-51918878 Msa0027550:CDS 35.0%
TATGCTCAGAGTTACTAGAA+CGG - chr1_1:51918905-51918924 None:intergenic 35.0%
AGTAACTCTGAGCATAATAC+TGG + chr1_1:51918909-51918928 Msa0027550:CDS 35.0%
GATATCTCTTTCAGATCCAA+TGG + chr1_1:51918957-51918976 Msa0027550:CDS 35.0%
TCACTTCTGCTGTGAATATA+TGG - chr1_1:51919035-51919054 None:intergenic 35.0%
CCGTTTCAAAAGATGTATCA+AGG + chr1_1:51919096-51919115 Msa0027550:CDS 35.0%
! TCACATCTTGTTTCAAACTC+GGG + chr1_1:51919227-51919246 Msa0027550:CDS 35.0%
CAATTTATTGACATGAGACG+AGG - chr1_1:51919270-51919289 None:intergenic 35.0%
ACAGAAAACCGTATCATTGT+AGG + chr1_1:51919368-51919387 Msa0027550:CDS 35.0%
CAGAAAACCGTATCATTGTA+GGG + chr1_1:51919369-51919388 Msa0027550:CDS 35.0%
ATTTCGCTGCTATATTCAGA+CGG + chr1_1:51919416-51919435 Msa0027550:CDS 35.0%
GAGAACGGTAAAGCAAAAAT+CGG + chr1_1:51919614-51919633 Msa0027550:CDS 35.0%
GAGGTTATATAAAGCAGTAG+CGG - chr1_1:51919708-51919727 None:intergenic 35.0%
AGGTTAGAAATTGCAAGAGA+AGG + chr1_1:51919866-51919885 Msa0027550:CDS 35.0%
TTAGAAATTGCAAGAGAAGG+TGG + chr1_1:51919869-51919888 Msa0027550:CDS 35.0%
AATTATGCCTACATAGTTCC+AGG + chr1_1:51919966-51919985 Msa0027550:CDS 35.0%
TACAAAACCTGGAACTATGT+AGG - chr1_1:51919976-51919995 None:intergenic 35.0%
TAAAACCAGTGTACAAAACC+TGG - chr1_1:51919987-51920006 None:intergenic 35.0%
!!! TGTACACTGGTTTTACAAGA+AGG + chr1_1:51919992-51920011 Msa0027550:CDS 35.0%
GCACTAACATTTCGGATTAA+AGG - chr1_1:51920313-51920332 None:intergenic 35.0%
TAGCAGTAGCACTAACATTT+CGG - chr1_1:51920321-51920340 None:intergenic 35.0%
CCCGAAAATGAGTTTATAAG+TGG + chr1_1:51920350-51920369 Msa0027550:intron 35.0%
GAATTCCTCACCTAAAAAAC+TGG + chr1_1:51920376-51920395 Msa0027550:intron 35.0%
!!! CAAAACCAGTTTTTTAGGTG+AGG - chr1_1:51920384-51920403 None:intergenic 35.0%
!!! CCCTACAAAACCAGTTTTTT+AGG - chr1_1:51920389-51920408 None:intergenic 35.0%
AAAAGGGGTTATGGAAGTAA+AGG - chr1_1:51920539-51920558 None:intergenic 35.0%
!! CAGTCATTTTCGTAATCAAC+GGG + chr1_1:51920731-51920750 Msa0027550:CDS 35.0%
! TCTTCATGATTTTCCCTTTG+TGG - chr1_1:51920769-51920788 None:intergenic 35.0%
AATTACTTAGGCTAGGAGAA+GGG - chr1_1:51920818-51920837 None:intergenic 35.0%
AAATTACTTAGGCTAGGAGA+AGG - chr1_1:51920819-51920838 None:intergenic 35.0%
CCTAAATCTATAGAATCAGG+AGG - chr1_1:51920856-51920875 None:intergenic 35.0%
CCTCCTGATTCTATAGATTT+AGG + chr1_1:51920853-51920872 Msa0027550:three_prime_UTR 35.0%
!! TAGTTTCTGAAGCTTTAGCT+TGG + chr1_1:51921012-51921031 Msa0027550:three_prime_UTR 35.0%
CTACTAGAGCATAACTCATA+TGG + chr1_1:51921059-51921078 Msa0027550:three_prime_UTR 35.0%
! TATATGCACTGAACTGACTT+GGG - chr1_1:51921095-51921114 None:intergenic 35.0%
ATATATGCACTGAACTGACT+TGG - chr1_1:51921096-51921115 None:intergenic 35.0%
! CTGCATTTGGGATTGGATTA+GGG - chr1_1:51915526-51915545 None:intergenic 40.0%
! ACTGCATTTGGGATTGGATT+AGG - chr1_1:51915527-51915546 None:intergenic 40.0%
! ATGAAGACTGCATTTGGGAT+TGG - chr1_1:51915533-51915552 None:intergenic 40.0%
GTCCAACAACTACAAACAAG+AGG - chr1_1:51915717-51915736 None:intergenic 40.0%
CTGAGAGAAAGGAAAGAAGA+GGG - chr1_1:51915739-51915758 None:intergenic 40.0%
TCTGTAAAAGCCTGAGAGAA+AGG - chr1_1:51915750-51915769 None:intergenic 40.0%
TGAGGAGAGGTTGTAAAGAA+GGG + chr1_1:51916273-51916292 Msa0027550:intron 40.0%
TGCATTTCCAGACTCTACAA+TGG + chr1_1:51916510-51916529 Msa0027550:intron 40.0%
ATTTCCAGACTCTACAATGG+TGG + chr1_1:51916513-51916532 Msa0027550:intron 40.0%
TTTCCAGACTCTACAATGGT+GGG + chr1_1:51916514-51916533 Msa0027550:intron 40.0%
GACCTGTGTTATAAAGAGTC+AGG + chr1_1:51916600-51916619 Msa0027550:intron 40.0%
GACCTGACTCTTTATAACAC+AGG - chr1_1:51916605-51916624 None:intergenic 40.0%
GTAGCCCTTACTTTACAATC+TGG + chr1_1:51916649-51916668 Msa0027550:intron 40.0%
! TATGGGGTTTTTATGCCGTT+CGG + chr1_1:51916675-51916694 Msa0027550:intron 40.0%
AAAATCCAAACTGCATAGGG+TGG + chr1_1:51916703-51916722 Msa0027550:intron 40.0%
AAATCCAAACTGCATAGGGT+GGG + chr1_1:51916704-51916723 Msa0027550:intron 40.0%
! ACAAAACCGGCTTAAAGTGA+GGG - chr1_1:51917044-51917063 None:intergenic 40.0%
! TACAAAACCGGCTTAAAGTG+AGG - chr1_1:51917045-51917064 None:intergenic 40.0%
!! TCACTTTAAGCCGGTTTTGT+AGG + chr1_1:51917044-51917063 Msa0027550:intron 40.0%
!! CACTTTAAGCCGGTTTTGTA+GGG + chr1_1:51917045-51917064 Msa0027550:intron 40.0%
CTATCTCAACCCTACAAAAC+CGG - chr1_1:51917057-51917076 None:intergenic 40.0%
GATAGGTGGAATTGACATGA+AGG - chr1_1:51917108-51917127 None:intergenic 40.0%
CAATTCCACCTATCTACCTT+TGG + chr1_1:51917114-51917133 Msa0027550:intron 40.0%
CTTGCATGAAGAGAAACTTG+TGG + chr1_1:51917245-51917264 Msa0027550:intron 40.0%
CTGTGCGATTTCACTTAAAC+AGG + chr1_1:51917438-51917457 Msa0027550:intron 40.0%
ATATGCGTGTTAACGAAGCA+AGG + chr1_1:51917673-51917692 Msa0027550:CDS 40.0%
TATGCGTGTTAACGAAGCAA+GGG + chr1_1:51917674-51917693 Msa0027550:CDS 40.0%
CTGTGAATCTTGCTCATCTT+TGG - chr1_1:51917720-51917739 None:intergenic 40.0%
! TTCTTTTGAACTGGGATTGG+CGG + chr1_1:51918197-51918216 Msa0027550:intron 40.0%
! ACTTTTGCAGCACTATATCC+AGG + chr1_1:51918359-51918378 Msa0027550:intron 40.0%
TCTCAAGAAGGAAACAGCAA+TGG + chr1_1:51918392-51918411 Msa0027550:CDS 40.0%
AGATGATACTGAACCTTGCA+AGG + chr1_1:51918446-51918465 Msa0027550:CDS 40.0%
CTTGAAAGAGACTATTGCTG+TGG + chr1_1:51918521-51918540 Msa0027550:CDS 40.0%
AGAGACTATTGCTGTGGAAA+AGG + chr1_1:51918527-51918546 Msa0027550:CDS 40.0%
AAGGAAAGATTGAACGCTGA+AGG + chr1_1:51918546-51918565 Msa0027550:CDS 40.0%
TCACATAATCACGTAAGACG+CGG - chr1_1:51918623-51918642 None:intergenic 40.0%
GAGTACTTTGCAGTCAAAAG+TGG + chr1_1:51918651-51918670 Msa0027550:CDS 40.0%
CATGTTGGATCCTGTTATTG+TGG + chr1_1:51918719-51918738 Msa0027550:CDS 40.0%
TTGTCTCTCGTATGTTTGAC+CGG - chr1_1:51918748-51918767 None:intergenic 40.0%
AGAGACAATCCATCCAAAAG+TGG + chr1_1:51918760-51918779 Msa0027550:CDS 40.0%
!!! ATGATCAAGCCACTTTTGGA+TGG - chr1_1:51918772-51918791 None:intergenic 40.0%
ATCCAAAAGTGGCTTGATCA+TGG + chr1_1:51918771-51918790 Msa0027550:CDS 40.0%
TCCAAAAGTGGCTTGATCAT+GGG + chr1_1:51918772-51918791 Msa0027550:CDS 40.0%
GTAAGTCTTTGACGAGTCTT+TGG - chr1_1:51918810-51918829 None:intergenic 40.0%
!! TATGATAGCAACTTGGTGTG+AGG + chr1_1:51918866-51918885 Msa0027550:CDS 40.0%
AGATCCAATGGAGAATGCAA+TGG + chr1_1:51918969-51918988 Msa0027550:CDS 40.0%
!! AAAGATGTATCAAGGGTGTC+TGG + chr1_1:51919104-51919123 Msa0027550:CDS 40.0%
TTTATTGACATGAGACGAGG+TGG - chr1_1:51919267-51919286 None:intergenic 40.0%
TTTCGCTGCTATATTCAGAC+GGG + chr1_1:51919417-51919436 Msa0027550:CDS 40.0%
AGACAACAAGGCCTTGATTA+TGG + chr1_1:51919493-51919512 Msa0027550:CDS 40.0%
TCTATTCAGCCTCTCTGTAA+TGG + chr1_1:51919592-51919611 Msa0027550:CDS 40.0%
ATGCTTTAATTGCACCGGAA+CGG - chr1_1:51919640-51919659 None:intergenic 40.0%
TTCCGGTGCAATTAAAGCAT+TGG + chr1_1:51919640-51919659 Msa0027550:CDS 40.0%
AGGAACACTTAGAGGAAAGA+AGG + chr1_1:51919679-51919698 Msa0027550:CDS 40.0%
AAAGCTCGAATAGTTCAAGC+TGG + chr1_1:51919746-51919765 Msa0027550:CDS 40.0%
TTGTTGAATCAGGTTCTCAG+AGG + chr1_1:51919912-51919931 Msa0027550:CDS 40.0%
TGTTGAATCAGGTTCTCAGA+GGG + chr1_1:51919913-51919932 Msa0027550:CDS 40.0%
!! TAGTTCCAGGTTTTGTACAC+TGG + chr1_1:51919979-51919998 Msa0027550:CDS 40.0%
TGAGATAATGCAACTAAGGG+AGG - chr1_1:51920025-51920044 None:intergenic 40.0%
TACTCCAAGAGCAAAGGAAA+AGG + chr1_1:51920051-51920070 Msa0027550:CDS 40.0%
! CATACCTTTTCCTTTGCTCT+TGG - chr1_1:51920058-51920077 None:intergenic 40.0%
CAAGAGCAAAGGAAAAGGTA+TGG + chr1_1:51920056-51920075 Msa0027550:intron 40.0%
! TCCTTTGCTATGCTTATGAG+TGG + chr1_1:51920094-51920113 Msa0027550:intron 40.0%
TCCACTCATAAGCATAGCAA+AGG - chr1_1:51920098-51920117 None:intergenic 40.0%
! TGTTCAACATGTGTCGCTAT+CGG - chr1_1:51920281-51920300 None:intergenic 40.0%
!! TTTCGGATTAAAGGAGTGTC+CGG - chr1_1:51920304-51920323 None:intergenic 40.0%
!!! TGGTTTTGTAGGGTTGAGTT+CGG + chr1_1:51920396-51920415 Msa0027550:intron 40.0%
!! ACTTTTGGGAAAAGGGGTTA+TGG - chr1_1:51920548-51920567 None:intergenic 40.0%
!! GAAGTTCTGATCCTTTTGTC+TGG + chr1_1:51920578-51920597 Msa0027550:intron 40.0%
! CTTGTTGTAAACATTCACGC+AGG + chr1_1:51920695-51920714 Msa0027550:intron 40.0%
! GCCCTCTTGTTTGTAGTTGT+TGG + chr1_1:51915712-51915731 Msa0027550:five_prime_UTR 45.0%
CCTGAGAGAAAGGAAAGAAG+AGG - chr1_1:51915740-51915759 None:intergenic 45.0%
CCTCTTCTTTCCTTTCTCTC+AGG + chr1_1:51915737-51915756 Msa0027550:five_prime_UTR 45.0%
!!! TGGTTTTTGGGGTGAAACTG+AGG + chr1_1:51916255-51916274 Msa0027550:intron 45.0%
CTGAGGAGAGGTTGTAAAGA+AGG + chr1_1:51916272-51916291 Msa0027550:intron 45.0%
! TTTTCCCACCCTATGCAGTT+TGG - chr1_1:51916711-51916730 None:intergenic 45.0%
GTGGGAAAAGAAACAGTCTC+TGG + chr1_1:51916722-51916741 Msa0027550:intron 45.0%
ATGTCTAGTGCTCAGTGTGA+GGG + chr1_1:51916951-51916970 Msa0027550:intron 45.0%
AGGGCATAGGTTTCACTGTT+TGG - chr1_1:51917533-51917552 None:intergenic 45.0%
TCCATAACATCGTCGAGTAC+TGG - chr1_1:51917603-51917622 None:intergenic 45.0%
TTAGCCAAAACCGATGCAGA+TGG - chr1_1:51917904-51917923 None:intergenic 45.0%
CTTCCAACTTTGCACATACC+TGG - chr1_1:51917930-51917949 None:intergenic 45.0%
CAGGTATGTGCAAAGTTGGA+AGG + chr1_1:51917928-51917947 Msa0027550:intron 45.0%
CTCAACAGAAGCGATTAAGG+AGG - chr1_1:51917956-51917975 None:intergenic 45.0%
! TGACAATGCCTCTTGCTGTA+CGG + chr1_1:51917992-51918011 Msa0027550:intron 45.0%
AACTGTTGCCACTCTGTAGT+TGG + chr1_1:51918101-51918120 Msa0027550:intron 45.0%
CACTCTGTAGTTGGAGACAT+GGG + chr1_1:51918110-51918129 Msa0027550:intron 45.0%
TCTTGAGACACTGAAGTTCC+TGG - chr1_1:51918380-51918399 None:intergenic 45.0%
GGAACTTCAGTGTCTCAAGA+AGG + chr1_1:51918380-51918399 Msa0027550:CDS 45.0%
! AAGGACAACGAAAGTACGGA+GGG - chr1_1:51918686-51918705 None:intergenic 45.0%
! AAAGGACAACGAAAGTACGG+AGG - chr1_1:51918687-51918706 None:intergenic 45.0%
GATCCTGTTATTGTGGCTTC+CGG + chr1_1:51918726-51918745 Msa0027550:CDS 45.0%
CTCAGAGTTACTAGAACGGT+TGG - chr1_1:51918901-51918920 None:intergenic 45.0%
GCATCCATTGCATTCTCCAT+TGG - chr1_1:51918976-51918995 None:intergenic 45.0%
CACACTGCCCTACAATGATA+CGG - chr1_1:51919379-51919398 None:intergenic 45.0%
GTATCATTGTAGGGCAGTGT+GGG + chr1_1:51919378-51919397 Msa0027550:CDS 45.0%
TATCATTGTAGGGCAGTGTG+GGG + chr1_1:51919379-51919398 Msa0027550:CDS 45.0%
CAAGGCCTTGATTATGGAAG+CGG + chr1_1:51919499-51919518 Msa0027550:CDS 45.0%
AAGGCCTTGATTATGGAAGC+GGG + chr1_1:51919500-51919519 Msa0027550:CDS 45.0%
! AGCCTCTCTGTAATGGAGAA+CGG + chr1_1:51919599-51919618 Msa0027550:CDS 45.0%
TACCGTTCTCCATTACAGAG+AGG - chr1_1:51919604-51919623 None:intergenic 45.0%
AAAGCAAAAATCGGCCGTTC+CGG + chr1_1:51919623-51919642 Msa0027550:CDS 45.0%
CGCCAATGCTTTAATTGCAC+CGG - chr1_1:51919645-51919664 None:intergenic 45.0%
!! CGGTGCAATTAAAGCATTGG+CGG + chr1_1:51919643-51919662 Msa0027550:CDS 45.0%
CTTTCCTCTAAGTGTTCCTG+AGG - chr1_1:51919678-51919697 None:intergenic 45.0%
AGCTGGAGCTGTCAAATTTC+TGG + chr1_1:51919763-51919782 Msa0027550:CDS 45.0%
! AGCCTTGTCAACCATTCCAT+CGG - chr1_1:51919807-51919826 None:intergenic 45.0%
TGTCGACAGGTTTGACAGAA+CGG - chr1_1:51919834-51919853 None:intergenic 45.0%
GTCAAACCTGTCGACAATTG+CGG + chr1_1:51919838-51919857 Msa0027550:CDS 45.0%
GTTGAATCAGGTTCTCAGAG+GGG + chr1_1:51919914-51919933 Msa0027550:CDS 45.0%
ATCTGGTACTCCAAGAGCAA+AGG + chr1_1:51920045-51920064 Msa0027550:CDS 45.0%
GTCCCACACTAGATGAGATA+TGG + chr1_1:51920142-51920161 Msa0027550:intron 45.0%
GGCCATATCTCATCTAGTGT+GGG - chr1_1:51920147-51920166 None:intergenic 45.0%
AGGCCATATCTCATCTAGTG+TGG - chr1_1:51920148-51920167 None:intergenic 45.0%
TGTCTGCGTCTTTGCTTCAT+AGG - chr1_1:51920168-51920187 None:intergenic 45.0%
TAGCGACACATGTTGAACAC+CGG + chr1_1:51920282-51920301 Msa0027550:intron 45.0%
GAAGCAGCTACTACCACAAA+GGG + chr1_1:51920753-51920772 Msa0027550:CDS 45.0%
! TCTACTTTGGTGGCTGTACT+CGG + chr1_1:51920978-51920997 Msa0027550:three_prime_UTR 45.0%
!! ACTGAACTGACTTGGGAGTT+GGG - chr1_1:51921088-51921107 None:intergenic 45.0%
! TTTGGGGTGAAACTGAGGAG+AGG + chr1_1:51916260-51916279 Msa0027550:intron 50.0%
TCTCCCACCATTGTAGAGTC+TGG - chr1_1:51916520-51916539 None:intergenic 50.0%
GCGGATGGCCTAATAGATCT+TGG - chr1_1:51916802-51916821 None:intergenic 50.0%
! GGACATCTGGAGCATAACCA+GGG - chr1_1:51916832-51916851 None:intergenic 50.0%
! TGGACATCTGGAGCATAACC+AGG - chr1_1:51916833-51916852 None:intergenic 50.0%
CATGTCTAGTGCTCAGTGTG+AGG + chr1_1:51916950-51916969 Msa0027550:intron 50.0%
TGTCTAGTGCTCAGTGTGAG+GGG + chr1_1:51916952-51916971 Msa0027550:intron 50.0%
GTGTGTTAGGAGTCCCACAT+CGG + chr1_1:51916976-51916995 Msa0027550:intron 50.0%
AGGCATCCCTCACTTTAAGC+CGG + chr1_1:51917035-51917054 Msa0027550:intron 50.0%
! CAGATCTTCTGGAAGGGCAT+AGG - chr1_1:51917546-51917565 None:intergenic 50.0%
GCCAGTACTCGACGATGTTA+TGG + chr1_1:51917599-51917618 Msa0027550:CDS 50.0%
! TGCAGATGGTGGTGACTCTA+AGG - chr1_1:51917890-51917909 None:intergenic 50.0%
AGAGTCACCACCATCTGCAT+CGG + chr1_1:51917891-51917910 Msa0027550:CDS 50.0%
!!! ACCACCATCTGCATCGGTTT+TGG + chr1_1:51917897-51917916 Msa0027550:CDS 50.0%
!!! ATCGGTTTTGGCTAACCTCC+AGG + chr1_1:51917909-51917928 Msa0027550:CDS 50.0%
CCAACTTTGCACATACCTGG+AGG - chr1_1:51917927-51917946 None:intergenic 50.0%
CCTCCAGGTATGTGCAAAGT+TGG + chr1_1:51917924-51917943 Msa0027550:intron 50.0%
! TGCCTCTTGCTGTACGGTTT+AGG + chr1_1:51917998-51918017 Msa0027550:intron 50.0%
! GCCTCTTGCTGTACGGTTTA+GGG + chr1_1:51917999-51918018 Msa0027550:intron 50.0%
! CCTCTTGCTGTACGGTTTAG+GGG + chr1_1:51918000-51918019 Msa0027550:intron 50.0%
CCATGTCTCCAACTACAGAG+TGG - chr1_1:51918112-51918131 None:intergenic 50.0%
CCACTCTGTAGTTGGAGACA+TGG + chr1_1:51918109-51918128 Msa0027550:intron 50.0%
TGACCGGAAGCCACAATAAC+AGG - chr1_1:51918732-51918751 None:intergenic 50.0%
!! GCCCATGATCAAGCCACTTT+TGG - chr1_1:51918776-51918795 None:intergenic 50.0%
TTCTATCCCTCCCGCATCTA+CGG - chr1_1:51919156-51919175 None:intergenic 50.0%
GATGCGGGAGGGATAGAAAA+TGG + chr1_1:51919158-51919177 Msa0027550:CDS 50.0%
CTACTGCTGCAGAAGAACTG+AGG + chr1_1:51919327-51919346 Msa0027550:CDS 50.0%
CGTATCATTGTAGGGCAGTG+TGG + chr1_1:51919377-51919396 Msa0027550:CDS 50.0%
AGGCCTTGATTATGGAAGCG+GGG + chr1_1:51919501-51919520 Msa0027550:CDS 50.0%
! GACAGGAAATGATGGTGCCA+AGG + chr1_1:51919553-51919572 Msa0027550:CDS 50.0%
! TGGTGCCAAGGAGAATTCTG+CGG + chr1_1:51919565-51919584 Msa0027550:CDS 50.0%
CTTGCCTCAGGAACACTTAG+AGG + chr1_1:51919671-51919690 Msa0027550:CDS 50.0%
TTGTCAACCATTCCATCGGC+AGG - chr1_1:51919803-51919822 None:intergenic 50.0%
TGCCGATGGAATGGTTGACA+AGG + chr1_1:51919802-51919821 Msa0027550:CDS 50.0%
AAACCTGTCGACAATTGCGG+AGG + chr1_1:51919841-51919860 Msa0027550:CDS 50.0%
AACCTGTCGACAATTGCGGA+GGG + chr1_1:51919842-51919861 Msa0027550:CDS 50.0%
ATCAGGTTCTCAGAGGGGAA+AGG + chr1_1:51919919-51919938 Msa0027550:CDS 50.0%
TGAAGCAAAGACGCAGACAC+TGG + chr1_1:51920169-51920188 Msa0027550:intron 50.0%
GGAAGCAGCTACTACCACAA+AGG + chr1_1:51920752-51920771 Msa0027550:CDS 50.0%
!! TGAACTGACTTGGGAGTTGG+GGG - chr1_1:51921086-51921105 None:intergenic 50.0%
!! CTGAACTGACTTGGGAGTTG+GGG - chr1_1:51921087-51921106 None:intergenic 50.0%
!! CACTGAACTGACTTGGGAGT+TGG - chr1_1:51921089-51921108 None:intergenic 50.0%
! ATGGTGGGAGAGATGCGTAG+TGG + chr1_1:51916529-51916548 Msa0027550:intron 55.0%
TGGTGGGAGAGATGCGTAGT+GGG + chr1_1:51916530-51916549 Msa0027550:intron 55.0%
! GCATAACCAGGGAGGCATAG+CGG - chr1_1:51916821-51916840 None:intergenic 55.0%
! CATCTGGAGCATAACCAGGG+AGG - chr1_1:51916829-51916848 None:intergenic 55.0%
ATGCTCCAGATGTCCAGTCC+TGG + chr1_1:51916837-51916856 Msa0027550:intron 55.0%
TGCTCCAGATGTCCAGTCCT+GGG + chr1_1:51916838-51916857 Msa0027550:intron 55.0%
! CAGTGTGAGGGGTGTGTGTT+AGG + chr1_1:51916963-51916982 Msa0027550:intron 55.0%
GCCAAAACCGATGCAGATGG+TGG - chr1_1:51917901-51917920 None:intergenic 55.0%
CCCCTAAACCGTACAGCAAG+AGG - chr1_1:51918003-51918022 None:intergenic 55.0%
!! GAAGGTGTCGTCCGTAGATG+CGG + chr1_1:51919142-51919161 Msa0027550:CDS 55.0%
!! AAGGTGTCGTCCGTAGATGC+GGG + chr1_1:51919143-51919162 Msa0027550:CDS 55.0%
GGCCTTGATTATGGAAGCGG+GGG + chr1_1:51919502-51919521 Msa0027550:CDS 55.0%
AGCCCCCGCTTCCATAATCA+AGG - chr1_1:51919507-51919526 None:intergenic 55.0%
AGCTGCCGCAGAATTCTCCT+TGG - chr1_1:51919573-51919592 None:intergenic 55.0%
TTGGCGGAACTTCTTGCCTC+AGG + chr1_1:51919659-51919678 Msa0027550:CDS 55.0%
! GAGTTAACGGATCCTGCCGA+TGG + chr1_1:51919788-51919807 Msa0027550:CDS 55.0%
AACGGATCCTGCCGATGGAA+TGG + chr1_1:51919793-51919812 Msa0027550:CDS 55.0%
TTCCCTCCGCAATTGTCGAC+AGG - chr1_1:51919847-51919866 None:intergenic 55.0%
TGTCGACAATTGCGGAGGGA+AGG + chr1_1:51919846-51919865 Msa0027550:CDS 55.0%
CGACACGACATAGCCACATG+TGG - chr1_1:51920254-51920273 None:intergenic 55.0%
! ACTTTGGTGGCTGTACTCGG+AGG + chr1_1:51920981-51921000 Msa0027550:three_prime_UTR 55.0%
! AACCAGGGAGGCATAGCGGA+TGG - chr1_1:51916817-51916836 None:intergenic 60.0%
TGTCGTCCGTAGATGCGGGA+GGG + chr1_1:51919147-51919166 Msa0027550:CDS 60.0%
! TTGGTGGCTGTACTCGGAGG+AGG + chr1_1:51920984-51921003 Msa0027550:three_prime_UTR 60.0%
CACGCCCAGGACTGGACATC+TGG - chr1_1:51916845-51916864 None:intergenic 65.0%
TGTCCAGTCCTGGGCGTGTG+AGG + chr1_1:51916847-51916866 Msa0027550:intron 65.0%
GTCCAGTCCTGGGCGTGTGA+GGG + chr1_1:51916848-51916867 Msa0027550:intron 65.0%
TCCAGTCCTGGGCGTGTGAG+GGG + chr1_1:51916849-51916868 Msa0027550:intron 65.0%
GGGGGTGGGGGGTAGTTAAG+AGG + chr1_1:51916869-51916888 Msa0027550:intron 65.0%
GTGTCGTCCGTAGATGCGGG+AGG + chr1_1:51919146-51919165 Msa0027550:CDS 65.0%
GGCCATCCGCTATGCCTCCC+TGG + chr1_1:51916812-51916831 Msa0027550:intron 70.0%
CCAGTCCTGGGCGTGTGAGG+GGG + chr1_1:51916850-51916869 Msa0027550:intron 70.0%
CAGTCCTGGGCGTGTGAGGG+GGG + chr1_1:51916851-51916870 Msa0027550:intron 70.0%
CCCCCTCACACGCCCAGGAC+TGG - chr1_1:51916853-51916872 None:intergenic 75.0%
TCCTGGGCGTGTGAGGGGGG+TGG + chr1_1:51916854-51916873 Msa0027550:intron 75.0%
CCTGGGCGTGTGAGGGGGGT+GGG + chr1_1:51916855-51916874 Msa0027550:intron 75.0%
CTGGGCGTGTGAGGGGGGTG+GGG + chr1_1:51916856-51916875 Msa0027550:intron 75.0%
TGGGCGTGTGAGGGGGGTGG+GGG + chr1_1:51916857-51916876 Msa0027550:intron 75.0%
! CCCACCCCCCTCACACGCCC+AGG - chr1_1:51916858-51916877 None:intergenic 80.0%
! GGGCGTGTGAGGGGGGTGGG+GGG + chr1_1:51916858-51916877 Msa0027550:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51915486 51921174 51915486 ID=Msa0027550;Name=Msa0027550
chr1_1 mRNA 51915486 51921174 51915486 ID=Msa0027550-mRNA-1;Parent=Msa0027550;Name=Msa0027550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=453|1|1|1|0.75|0.6|5|389|726
chr1_1 exon 51915486 51915948 51915486 ID=Msa0027550-mRNA-1:exon:15251;Parent=Msa0027550-mRNA-1
chr1_1 exon 51917460 51917740 51917460 ID=Msa0027550-mRNA-1:exon:15252;Parent=Msa0027550-mRNA-1
chr1_1 exon 51917814 51917930 51917814 ID=Msa0027550-mRNA-1:exon:15253;Parent=Msa0027550-mRNA-1
chr1_1 exon 51918369 51920072 51918369 ID=Msa0027550-mRNA-1:exon:15254;Parent=Msa0027550-mRNA-1
chr1_1 exon 51920717 51921174 51920717 ID=Msa0027550-mRNA-1:exon:15255;Parent=Msa0027550-mRNA-1
chr1_1 five_prime_UTR 51915486 51915938 51915486 ID=Msa0027550-mRNA-1:five_prime_utr;Parent=Msa0027550-mRNA-1
chr1_1 CDS 51915939 51915948 51915939 ID=Msa0027550-mRNA-1:cds;Parent=Msa0027550-mRNA-1
chr1_1 CDS 51917460 51917740 51917460 ID=Msa0027550-mRNA-1:cds;Parent=Msa0027550-mRNA-1
chr1_1 CDS 51917814 51917930 51917814 ID=Msa0027550-mRNA-1:cds;Parent=Msa0027550-mRNA-1
chr1_1 CDS 51918369 51920072 51918369 ID=Msa0027550-mRNA-1:cds;Parent=Msa0027550-mRNA-1
chr1_1 CDS 51920717 51920785 51920717 ID=Msa0027550-mRNA-1:cds;Parent=Msa0027550-mRNA-1
chr1_1 three_prime_UTR 51920786 51921174 51920786 ID=Msa0027550-mRNA-1:three_prime_utr;Parent=Msa0027550-mRNA-1
Gene Sequence

>Msa0027550

ATGCATATAGGTCAAACGGATACAGCGTCAGTAACATGTCTGATCAACAGCATTTCTCGATTCGTTCATCTAGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAGAAGATCTGCAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCAGTACTCGACGATGTTATGGATTACAAAATTCCTTTACATCAAAATTTATGTAAAGTATGTGAAGAATTGGATATGCGTGTTAACGAAGCAAGGGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCTTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCAATGAGAGAGCAAAGAGATGATACTGAACCTTGCAAGGAAAATCTAAAGGAAATGATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAAAGAGACTATTGCTGTGGAAAAGGAAAGATTGAACGCTGAAGGACATAAAATGAAAAGCGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCGTCTTACGTGATTATGTGATGAAAACTGAGTACTTTGCAGTCAAAAGTGGTTTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGACAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAAAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACACCAACCGTTCTAGTAACTCTGAGCATAATACTGGAAATGCATTTGAAGAACAAAAAGGCGATATCTCTTTCAGATCCAATGGAGAATGCAATGGATGCCAGAATATAGAAATAGAAAAGTGGGAGCTACAATCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCCGTTTCAAAAGATGTATCAAGGGTGTCTGGTAAGTATCAAATTACGAAGGTGTCGTCCGTAGATGCGGGAGGGATAGAAAATGGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTCACATCTTGTTTCAAACTCGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGATCTCCAAAACGAATCAATTGAAGTGAAAACTACTGCTGCAGAAGAACTGAGGCTCCTTACAAAGCATAACACAGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTAATTTCGCTGCTATATTCAGACGGGAAAGTAACACAAGAGCATGCTGTGACAGCTCTGCTTAATTTATCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCGGGGGCTATTGAACCCCTTATCCATGTTTTAAAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACGGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCATTGGCGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCCGCTACTGCTTTATATAACCTCTCAATATTTCATGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTCAAATTTCTGGTTGAGTTAACGGATCCTGCCGATGGAATGGTTGACAAGGCTGTTGCCGTTCTGTCAAACCTGTCGACAATTGCGGAGGGAAGGTTAGAAATTGCAAGAGAAGGTGGCATCCCGTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCAATTCTCTTACAATTATGCCTACATAGTTCCAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGCAGCTACTACCACAAAGGGAAAATCATGA
Protein sequence

>Msa0027550

MHIGQTDTASVTCLINSISRFVHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDVMDYKIPLHQNLCKVCEELDMRVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKAMREQRDDTEPCKENLKEMIELLKLTSTQELLKETIAVEKERLNAEGHKMKSDLEEINEIVNLVRVLRDYVMKTEYFAVKSGFSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNTNRSSNSEHNTGNAFEEQKGDISFRSNGECNGCQNIEIEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRVSGKYQITKVSSVDAGGIENGKNNNSNTTNSHSRVDSHLVSNSGLNELTTSSHVNKLIEDLQNESIEVKTTAAEELRLLTKHNTENRIIVGQCGAVMPLISLLYSDGKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAIKALAELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPADGMVDKAVAVLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREAATTTKGKS*