Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125900 | sp|Q93V47|GG2_ARATH | 76.364 | 55 | 13 | 0 | 26 | 80 | 18 | 72 | 4.15e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125900 | A0A072VN10 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 6.72e-40 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078020 | Msa0125900 | 0.804710 | 1.895824e-49 | -8.615850e-47 |
| Msa0125900 | Msa0615460 | -0.813505 | 2.474574e-51 | -8.615850e-47 |
| Msa0125900 | Msa0698510 | -0.808146 | 3.574372e-50 | -8.615850e-47 |
| Msa0125900 | Msa0698680 | -0.807757 | 4.324121e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125900 | MtrunA17_Chr1g0188161 | 93.902 | 82 | 5 | 0 | 1 | 82 | 1 | 82 | 3.76e-43 | 135 |
| Msa0125900 | MtrunA17_Chr1g0188131 | 82.716 | 81 | 12 | 2 | 1 | 80 | 1 | 80 | 1.20e-33 | 111 |
| Msa0125900 | MtrunA17_Chr1g0184941 | 56.667 | 60 | 26 | 0 | 23 | 82 | 24 | 83 | 4.27e-21 | 79.7 |
| Msa0125900 | MtrunA17_Chr1g0148341 | 37.647 | 85 | 47 | 1 | 4 | 82 | 14 | 98 | 3.12e-15 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125900 | AT3G22942.1 | 76.364 | 55 | 13 | 0 | 26 | 80 | 18 | 72 | 4.22e-20 | 77.4 |
| Msa0125900 | AT3G63420.1 | 54.688 | 64 | 29 | 0 | 17 | 80 | 7 | 70 | 2.06e-17 | 70.5 |
| Msa0125900 | AT3G63420.2 | 54.688 | 64 | 29 | 0 | 17 | 80 | 7 | 70 | 2.06e-17 | 70.5 |
| Msa0125900 | AT3G63420.3 | 54.688 | 64 | 29 | 0 | 17 | 80 | 47 | 110 | 2.02e-16 | 68.9 |
Find 29 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAACACTTGTCTTTAT+TGG | 0.138711 | 1_3:+54699963 | Msa0125900:five_prime_UTR |
| GGGTCAATCAATATCATTTC+TGG | 0.152641 | 1_3:+54699984 | Msa0125900:five_prime_UTR |
| CTTGAACACTTGTCTTTATT+GGG | 0.265247 | 1_3:+54699964 | Msa0125900:five_prime_UTR |
| TTTAGTTCAGGTCTGTGTTT+TGG | 0.275164 | 1_3:-54699850 | None:intergenic |
| GAATACATGCTGAACTTAAA+AGG | 0.312374 | 1_3:+54700220 | Msa0125900:CDS |
| TTCACAAACAAACACACTTC+TGG | 0.318890 | 1_3:+54699896 | Msa0125900:five_prime_UTR |
| AAGAGGGTTCAGTTTAGTTC+AGG | 0.319187 | 1_3:-54699862 | None:intergenic |
| GGTCAATCAATATCATTTCT+GGG | 0.454364 | 1_3:+54699985 | Msa0125900:five_prime_UTR |
| GTGATGGGTCATGTGATTCT+CGG | 0.459142 | 1_3:-54700148 | None:intergenic |
| GGTCATGTGATTCTCGGATT+CGG | 0.459276 | 1_3:-54700142 | None:intergenic |
| AAAATGAATGCAGGAAGAGC+TGG | 0.468685 | 1_3:+54702454 | Msa0125900:intron |
| TGAACTTAAAAGGTTGGAAC+AGG | 0.469117 | 1_3:+54700230 | Msa0125900:CDS |
| TACGATGGAAGCAAAGGATC+AGG | 0.480893 | 1_3:-54702663 | None:intergenic |
| ACAGGAAACAAGGTACTTAG+AGG | 0.494385 | 1_3:+54700248 | Msa0125900:CDS |
| ACATGCTGAACTTAAAAGGT+TGG | 0.526371 | 1_3:+54700224 | Msa0125900:CDS |
| CTGAGACTGAACCCGGTGAT+GGG | 0.537392 | 1_3:-54700163 | None:intergenic |
| GAATCACATGACCCATCACC+GGG | 0.542597 | 1_3:+54700152 | Msa0125900:CDS |
| AGAATCACATGACCCATCAC+CGG | 0.550612 | 1_3:+54700151 | Msa0125900:CDS |
| TTAGCATCAGAAAATGCAAT+CGG | 0.557138 | 1_3:+54700113 | Msa0125900:exon |
| CATCAGAAAATGCAATCGGA+TGG | 0.564403 | 1_3:+54700117 | Msa0125900:exon |
| TTTCTTCTTCAGATACTAGA+GGG | 0.566543 | 1_3:+54700190 | Msa0125900:CDS |
| ACAGAGACAGAAACAGAGAC+AGG | 0.567091 | 1_3:-54699919 | None:intergenic |
| GAACTGCAAAGTCTATGAAA+CGG | 0.571007 | 1_3:-54700053 | None:intergenic |
| CTTTCTTCTTCAGATACTAG+AGG | 0.572274 | 1_3:+54700189 | Msa0125900:CDS |
| ACTGAGACTGAACCCGGTGA+TGG | 0.572686 | 1_3:-54700164 | None:intergenic |
| TGATGCTAAGATGGTAACAA+TGG | 0.593641 | 1_3:-54700099 | None:intergenic |
| ATCAGAAAATGCAATCGGAT+GGG | 0.609307 | 1_3:+54700118 | Msa0125900:exon |
| AAAGAGACTGAGACTGAACC+CGG | 0.616487 | 1_3:-54700170 | None:intergenic |
| AAAGGTTGGAACAGGAAACA+AGG | 0.637890 | 1_3:+54700238 | Msa0125900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGTGATTTTTTATTT+TGG | + | chr1_3:54701588-54701607 | Msa0125900:intron | 10.0% |
| !!! | ATAGAAACAAAAGTATAAAA+TGG | - | chr1_3:54700944-54700963 | None:intergenic | 15.0% |
| !!! | TTTTGTAGAAATTTTTCAAA+AGG | + | chr1_3:54701025-54701044 | Msa0125900:intron | 15.0% |
| !! | TAACTGAATTAATATACTAT+TGG | - | chr1_3:54701238-54701257 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTGGAAATTTGT+AGG | + | chr1_3:54701599-54701618 | Msa0125900:intron | 15.0% |
| !! | CTATAGACAAAAAAATATTA+AGG | - | chr1_3:54701665-54701684 | None:intergenic | 15.0% |
| !!! | CTTAATATTTTTTTGTCTAT+AGG | + | chr1_3:54701663-54701682 | Msa0125900:intron | 15.0% |
| !!! | ATTCTTATTTCTTACTAATA+AGG | - | chr1_3:54702222-54702241 | None:intergenic | 15.0% |
| !! | ACATAATAGTTAACTTAAAA+AGG | - | chr1_3:54702272-54702291 | None:intergenic | 15.0% |
| !! | GCTTAAAATTAATACTAAAA+TGG | + | chr1_3:54702524-54702543 | Msa0125900:intron | 15.0% |
| !! | AATTCAAAGTTAAACTAATA+TGG | - | chr1_3:54702594-54702613 | None:intergenic | 15.0% |
| !!! | TTTTGAAACAATATTGTTAT+TGG | + | chr1_3:54703156-54703175 | Msa0125900:intron | 15.0% |
| !!! | TTTGAAGTTTTGTTCTTTAT+TGG | + | chr1_3:54700300-54700319 | Msa0125900:intron | 20.0% |
| !!! | TTGAAGTTTTGTTCTTTATT+GGG | + | chr1_3:54700301-54700320 | Msa0125900:intron | 20.0% |
| !!! | ATTTTATATGAGTATGGTTT+AGG | + | chr1_3:54700342-54700361 | Msa0125900:intron | 20.0% |
| !! | TTGAGTGTAATTATATATGT+TGG | + | chr1_3:54700523-54700542 | Msa0125900:intron | 20.0% |
| !! | TTTGATATTACTATTACCTA+AGG | + | chr1_3:54700621-54700640 | Msa0125900:intron | 20.0% |
| !!! | TTGTATTTGTATTGACAAAT+TGG | - | chr1_3:54700877-54700896 | None:intergenic | 20.0% |
| !! | AAAATTTCTACAAAATGAAC+AGG | - | chr1_3:54701020-54701039 | None:intergenic | 20.0% |
| !! | ACTTTCTTAAGATATATTTC+TGG | - | chr1_3:54701113-54701132 | None:intergenic | 20.0% |
| !! | AGTTAAGAAGATATATGTAA+AGG | - | chr1_3:54701268-54701287 | None:intergenic | 20.0% |
| !!! | ATTTTCTCAAGAAAATTTAC+TGG | + | chr1_3:54701848-54701867 | Msa0125900:intron | 20.0% |
| !!! | TTATCATGCTTCTATTTTTA+TGG | - | chr1_3:54702085-54702104 | None:intergenic | 20.0% |
| !! | GAAGCATGATAAAAATAATT+TGG | + | chr1_3:54702093-54702112 | Msa0125900:intron | 20.0% |
| !!! | ACTTCTGTAATGAAATTTTT+TGG | + | chr1_3:54702346-54702365 | Msa0125900:intron | 20.0% |
| !!! | TAACTAATGATACAATTTTC+TGG | + | chr1_3:54702757-54702776 | Msa0125900:intron | 20.0% |
| !!! | AATAACTACTCAGTTTTATT+TGG | + | chr1_3:54702874-54702893 | Msa0125900:intron | 20.0% |
| ! | CATCTTTCTTTCCATAAAAA+TGG | + | chr1_3:54700009-54700028 | Msa0125900:five_prime_UTR | 25.0% |
| ! | AAGAACAAAACTTCAAAACA+TGG | - | chr1_3:54700297-54700316 | None:intergenic | 25.0% |
| !! | TTGGGTAGTTTTTATATCAA+AGG | + | chr1_3:54700319-54700338 | Msa0125900:intron | 25.0% |
| !! | CAAAGGATTTTATATGAGTA+TGG | + | chr1_3:54700336-54700355 | Msa0125900:intron | 25.0% |
| !! | GTTTAATCTTTTGATCATGT+TGG | + | chr1_3:54700384-54700403 | Msa0125900:intron | 25.0% |
| ! | GTAATTATATATGTTGGTGT+CGG | + | chr1_3:54700529-54700548 | Msa0125900:intron | 25.0% |
| ! | TGGATAGTAAATTATGAGTA+TGG | + | chr1_3:54700564-54700583 | Msa0125900:intron | 25.0% |
| ! | GTAAATTATGAGTATGGTTT+AGG | + | chr1_3:54700570-54700589 | Msa0125900:intron | 25.0% |
| ! | GTTTAAAGATGTATGAACAT+TGG | + | chr1_3:54700749-54700768 | Msa0125900:intron | 25.0% |
| !! | TTACTATGATTGATGATTTG+TGG | + | chr1_3:54700829-54700848 | Msa0125900:intron | 25.0% |
| ! | CAATACAAATACAACTATAC+AGG | + | chr1_3:54700883-54700902 | Msa0125900:intron | 25.0% |
| ! | ATGACCTAAATGCAAATAAA+TGG | - | chr1_3:54701052-54701071 | None:intergenic | 25.0% |
| ! | TAAGAAGATATATGTAAAGG+CGG | - | chr1_3:54701265-54701284 | None:intergenic | 25.0% |
| ! | ACATATATCTTCTTAACTAC+TGG | + | chr1_3:54701270-54701289 | Msa0125900:intron | 25.0% |
| ! | AAATCATTCTTTCTATAGTC+TGG | + | chr1_3:54701447-54701466 | Msa0125900:intron | 25.0% |
| !!! | TTATTTTGGAAATTTGTAGG+TGG | + | chr1_3:54701602-54701621 | Msa0125900:intron | 25.0% |
| !! | TTTTACCAAATGTTTGTTTG+TGG | + | chr1_3:54701625-54701644 | Msa0125900:intron | 25.0% |
| ! | GAAAATAACGTTATGGAAAA+AGG | - | chr1_3:54701834-54701853 | None:intergenic | 25.0% |
| ! | TTCTTGAGAAAATAACGTTA+TGG | - | chr1_3:54701841-54701860 | None:intergenic | 25.0% |
| ! | TTAAAGTCCTTTCAATCTTA+TGG | + | chr1_3:54701964-54701983 | Msa0125900:intron | 25.0% |
| ! | TGCACACATAAGTTAAAAAA+AGG | + | chr1_3:54702119-54702138 | Msa0125900:intron | 25.0% |
| !! | TTTTCATTGTTCTGTCTTAT+TGG | + | chr1_3:54702297-54702316 | Msa0125900:intron | 25.0% |
| !!! | TAGCTTTTCTTCTAAGATTA+TGG | + | chr1_3:54702400-54702419 | Msa0125900:intron | 25.0% |
| ! | TTCACTAAAAAAATGAATGC+AGG | + | chr1_3:54702445-54702464 | Msa0125900:intron | 25.0% |
| ! | AAACTATCCTGAAAAGTTTA+TGG | - | chr1_3:54703006-54703025 | None:intergenic | 25.0% |
| ! | TATTCCTTTATATACCTGAT+TGG | + | chr1_3:54703117-54703136 | Msa0125900:intron | 25.0% |
| ! | TGATTATCATTGACAAAGTT+TGG | - | chr1_3:54703267-54703286 | None:intergenic | 25.0% |
| GTGAAAAATTCAGAGAAAGA+GGG | - | chr1_3:54699881-54699900 | None:intergenic | 30.0% | |
| TGTGAAAAATTCAGAGAAAG+AGG | - | chr1_3:54699882-54699901 | None:intergenic | 30.0% | |
| TCTTGAACACTTGTCTTTAT+TGG | + | chr1_3:54699963-54699982 | Msa0125900:five_prime_UTR | 30.0% | |
| CTTGAACACTTGTCTTTATT+GGG | + | chr1_3:54699964-54699983 | Msa0125900:five_prime_UTR | 30.0% | |
| GGTCAATCAATATCATTTCT+GGG | + | chr1_3:54699985-54700004 | Msa0125900:five_prime_UTR | 30.0% | |
| !! | GAACAAAGACTCCATTTTTA+TGG | - | chr1_3:54700023-54700042 | None:intergenic | 30.0% |
| TTAGCATCAGAAAATGCAAT+CGG | + | chr1_3:54700113-54700132 | Msa0125900:exon | 30.0% | |
| TTTCTTCTTCAGATACTAGA+GGG | + | chr1_3:54700190-54700209 | Msa0125900:CDS | 30.0% | |
| GAATACATGCTGAACTTAAA+AGG | + | chr1_3:54700220-54700239 | Msa0125900:CDS | 30.0% | |
| TTTAGGAACTATGATGAGTA+TGG | + | chr1_3:54700359-54700378 | Msa0125900:intron | 30.0% | |
| ! | TTTAGGAAGTATGATGAGTA+TGG | + | chr1_3:54700587-54700606 | Msa0125900:intron | 30.0% |
| ATCAATACATTGATCACCTT+AGG | - | chr1_3:54700640-54700659 | None:intergenic | 30.0% | |
| !!! | TAACAAAGTGTGTTTTTAGC+TGG | + | chr1_3:54700717-54700736 | Msa0125900:intron | 30.0% |
| ! | TACAGGCTTGATGATTTAAA+TGG | + | chr1_3:54700900-54700919 | Msa0125900:intron | 30.0% |
| AGGTCCATTTATTTGCATTT+AGG | + | chr1_3:54701045-54701064 | Msa0125900:intron | 30.0% | |
| GAATTTACTCAGACTTGATA+AGG | - | chr1_3:54701173-54701192 | None:intergenic | 30.0% | |
| AAGAAGATATATGTAAAGGC+GGG | - | chr1_3:54701264-54701283 | None:intergenic | 30.0% | |
| AGTGTGACTTTGAATCTTAT+TGG | + | chr1_3:54701344-54701363 | Msa0125900:intron | 30.0% | |
| TTTGAATCTTATTGGAGTGA+GGG | + | chr1_3:54701352-54701371 | Msa0125900:intron | 30.0% | |
| TAGTTGCACTATACTTATCT+GGG | + | chr1_3:54701391-54701410 | Msa0125900:intron | 30.0% | |
| TAGTCTTCCTTAGTATAGTA+TGG | + | chr1_3:54701766-54701785 | Msa0125900:intron | 30.0% | |
| AGTCTTCCTTAGTATAGTAT+GGG | + | chr1_3:54701767-54701786 | Msa0125900:intron | 30.0% | |
| GTTGGCAATTTGATGTATTA+TGG | + | chr1_3:54701800-54701819 | Msa0125900:intron | 30.0% | |
| CAAGAAAATTTACTGGAACT+TGG | + | chr1_3:54701855-54701874 | Msa0125900:intron | 30.0% | |
| !!! | CTTATGGCATCTCTTTTTTT+AGG | + | chr1_3:54701980-54701999 | Msa0125900:intron | 30.0% |
| ! | CTAATTTGAAACAATGAGCA+TGG | + | chr1_3:54702043-54702062 | Msa0125900:intron | 30.0% |
| !! | AATAAGGTTTTGTCAAATGC+TGG | - | chr1_3:54702206-54702225 | None:intergenic | 30.0% |
| AAAAGGAAAACTAAGTGTTC+AGG | - | chr1_3:54702255-54702274 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGGAGCTTTTTCTG+TGG | + | chr1_3:54702360-54702379 | Msa0125900:intron | 30.0% |
| AATACGCTGAAAACAACTTA+TGG | - | chr1_3:54702982-54703001 | None:intergenic | 30.0% | |
| ! | CGTATTTCCATAAACTTTTC+AGG | + | chr1_3:54702996-54703015 | Msa0125900:intron | 30.0% |
| TAGACCAATCAGGTATATAA+AGG | - | chr1_3:54703124-54703143 | None:intergenic | 30.0% | |
| !! | TTTATATACCTGATTGGTCT+AGG | + | chr1_3:54703123-54703142 | Msa0125900:intron | 30.0% |
| !! | TTTAGTTCAGGTCTGTGTTT+TGG | - | chr1_3:54699853-54699872 | None:intergenic | 35.0% |
| TTCACAAACAAACACACTTC+TGG | + | chr1_3:54699896-54699915 | Msa0125900:five_prime_UTR | 35.0% | |
| GGGTCAATCAATATCATTTC+TGG | + | chr1_3:54699984-54700003 | Msa0125900:five_prime_UTR | 35.0% | |
| GAACTGCAAAGTCTATGAAA+CGG | - | chr1_3:54700056-54700075 | None:intergenic | 35.0% | |
| TGATGCTAAGATGGTAACAA+TGG | - | chr1_3:54700102-54700121 | None:intergenic | 35.0% | |
| ! | TGCATTTTCTGATGCTAAGA+TGG | - | chr1_3:54700111-54700130 | None:intergenic | 35.0% |
| ATCAGAAAATGCAATCGGAT+GGG | + | chr1_3:54700118-54700137 | Msa0125900:exon | 35.0% | |
| CTTTCTTCTTCAGATACTAG+AGG | + | chr1_3:54700189-54700208 | Msa0125900:CDS | 35.0% | |
| ACATGCTGAACTTAAAAGGT+TGG | + | chr1_3:54700224-54700243 | Msa0125900:CDS | 35.0% | |
| TGAACTTAAAAGGTTGGAAC+AGG | + | chr1_3:54700230-54700249 | Msa0125900:CDS | 35.0% | |
| ! | TTTAGCTTCATTCTTCAGTG+AGG | - | chr1_3:54700807-54700826 | None:intergenic | 35.0% |
| TGAAGAAATGATGCGATTCT+AGG | + | chr1_3:54701136-54701155 | Msa0125900:intron | 35.0% | |
| TTTACTCAGACTTGATAAGG+AGG | - | chr1_3:54701170-54701189 | None:intergenic | 35.0% | |
| AAGGTTAACGGAGTTAGTTA+GGG | - | chr1_3:54701202-54701221 | None:intergenic | 35.0% | |
| TAACTCCGTTAACCTTCTAT+TGG | + | chr1_3:54701206-54701225 | Msa0125900:intron | 35.0% | |
| ACTAGCCAATAGAAGGTTAA+CGG | - | chr1_3:54701214-54701233 | None:intergenic | 35.0% | |
| TATTGGAACTAGCCAATAGA+AGG | - | chr1_3:54701221-54701240 | None:intergenic | 35.0% | |
| CTTTGAATCTTATTGGAGTG+AGG | + | chr1_3:54701351-54701370 | Msa0125900:intron | 35.0% | |
| GTAGTTGCACTATACTTATC+TGG | + | chr1_3:54701390-54701409 | Msa0125900:intron | 35.0% | |
| AGTTGCACTATACTTATCTG+GGG | + | chr1_3:54701392-54701411 | Msa0125900:intron | 35.0% | |
| ! | ACTGACTTATTGTATGTCTG+AGG | - | chr1_3:54701491-54701510 | None:intergenic | 35.0% |
| AGCTAATCCATCAAGAAAGA+TGG | - | chr1_3:54701514-54701533 | None:intergenic | 35.0% | |
| GAGTGTATTTCGAAGTTTGT+AGG | - | chr1_3:54701553-54701572 | None:intergenic | 35.0% | |
| GTGTACCACAAACAAACATT+TGG | - | chr1_3:54701633-54701652 | None:intergenic | 35.0% | |
| TGTCTATAGGATAGAAGTTG+AGG | + | chr1_3:54701676-54701695 | Msa0125900:intron | 35.0% | |
| AAGTTGAGGTTTGATGTCTT+AGG | + | chr1_3:54701690-54701709 | Msa0125900:intron | 35.0% | |
| ! | TTGTTTACTAGCTTCAACGA+GGG | - | chr1_3:54701730-54701749 | None:intergenic | 35.0% |
| TGAACTCCCATACTATACTA+AGG | - | chr1_3:54701776-54701795 | None:intergenic | 35.0% | |
| AGAGATGCCATAAGATTGAA+AGG | - | chr1_3:54701974-54701993 | None:intergenic | 35.0% | |
| AAGAGCTGGAAAAACTTGAA+AGG | + | chr1_3:54702468-54702487 | Msa0125900:CDS | 35.0% | |
| CTGGCAACAAAAATAGAAGA+TGG | - | chr1_3:54702618-54702637 | None:intergenic | 35.0% | |
| !!! | CACAAGAAAGTTTTGAGAAG+CGG | - | chr1_3:54702692-54702711 | None:intergenic | 35.0% |
| !! | TTCTGGTTTGACAGAACAAT+TGG | + | chr1_3:54702774-54702793 | Msa0125900:intron | 35.0% |
| GAATACTTGTGAGACTGTTT+GGG | + | chr1_3:54702927-54702946 | Msa0125900:intron | 35.0% | |
| TGTAAATTCCTAGACCAATC+AGG | - | chr1_3:54703134-54703153 | None:intergenic | 35.0% | |
| ! | AAGAGGGTTCAGTTTAGTTC+AGG | - | chr1_3:54699865-54699884 | None:intergenic | 40.0% |
| CATCAGAAAATGCAATCGGA+TGG | + | chr1_3:54700117-54700136 | Msa0125900:exon | 40.0% | |
| AAAGGTTGGAACAGGAAACA+AGG | + | chr1_3:54700238-54700257 | Msa0125900:CDS | 40.0% | |
| ! | ACAGGAAACAAGGTACTTAG+AGG | + | chr1_3:54700248-54700267 | Msa0125900:CDS | 40.0% |
| TATTAGCACTGTCTACGTGT+CGG | - | chr1_3:54700501-54700520 | None:intergenic | 40.0% | |
| !! | TATATATGTTGGTGTCGGAC+AGG | + | chr1_3:54700534-54700553 | Msa0125900:intron | 40.0% |
| AACAACAGTGGATGGATACT+CGG | - | chr1_3:54700777-54700796 | None:intergenic | 40.0% | |
| CAGTTGTGAGATGAGAATTG+TGG | + | chr1_3:54700980-54700999 | Msa0125900:intron | 40.0% | |
| GAAGGTTAACGGAGTTAGTT+AGG | - | chr1_3:54701203-54701222 | None:intergenic | 40.0% | |
| AGTCAGTCCATCTTTCTTGA+TGG | + | chr1_3:54701504-54701523 | Msa0125900:intron | 40.0% | |
| AGTTTGTAGGACACATCTCA+AGG | - | chr1_3:54701540-54701559 | None:intergenic | 40.0% | |
| ! | CTTGTTTACTAGCTTCAACG+AGG | - | chr1_3:54701731-54701750 | None:intergenic | 40.0% |
| AGTATGGGAGTTCACATAGT+TGG | + | chr1_3:54701782-54701801 | Msa0125900:intron | 40.0% | |
| TGTCCTAAAGCAACACAGTA+TGG | + | chr1_3:54701911-54701930 | Msa0125900:intron | 40.0% | |
| GTCCTAAAGCAACACAGTAT+GGG | + | chr1_3:54701912-54701931 | Msa0125900:intron | 40.0% | |
| AGTATGGGACATACTACAGA+GGG | + | chr1_3:54701927-54701946 | Msa0125900:intron | 40.0% | |
| !! | TTTTCTGTGGATGCTGATTG+TGG | + | chr1_3:54702373-54702392 | Msa0125900:intron | 40.0% |
| AAAATGAATGCAGGAAGAGC+TGG | + | chr1_3:54702454-54702473 | Msa0125900:intron | 40.0% | |
| GCTGGAAAAACTTGAAAGGA+TGG | + | chr1_3:54702472-54702491 | Msa0125900:CDS | 40.0% | |
| TTGTACACTACTCAGCAATC+TGG | - | chr1_3:54702637-54702656 | None:intergenic | 40.0% | |
| ! | TTTGAGAAGCGGTTTTACGA+TGG | - | chr1_3:54702681-54702700 | None:intergenic | 40.0% |
| AGTCTCACAAGTATTCGTGT+CGG | - | chr1_3:54702923-54702942 | None:intergenic | 40.0% | |
| CGAATACTTGTGAGACTGTT+TGG | + | chr1_3:54702926-54702945 | Msa0125900:intron | 40.0% | |
| ACAGAGACAGAAACAGAGAC+AGG | - | chr1_3:54699922-54699941 | None:intergenic | 45.0% | |
| GGTCATGTGATTCTCGGATT+CGG | - | chr1_3:54700145-54700164 | None:intergenic | 45.0% | |
| !! | GTGATGGGTCATGTGATTCT+CGG | - | chr1_3:54700151-54700170 | None:intergenic | 45.0% |
| AGAATCACATGACCCATCAC+CGG | + | chr1_3:54700151-54700170 | Msa0125900:CDS | 45.0% | |
| AAAGAGACTGAGACTGAACC+CGG | - | chr1_3:54700173-54700192 | None:intergenic | 45.0% | |
| GTATCCGTGCTTCATAGCAT+AGG | - | chr1_3:54700455-54700474 | None:intergenic | 45.0% | |
| ! | ACGGAGTTAGTTAGGGTGTT+GGG | - | chr1_3:54701195-54701214 | None:intergenic | 45.0% |
| AACGGAGTTAGTTAGGGTGT+TGG | - | chr1_3:54701196-54701215 | None:intergenic | 45.0% | |
| CATAGTGAGAGAGAGAGATG+TGG | + | chr1_3:54701424-54701443 | Msa0125900:intron | 45.0% | |
| !! | GTCCCATACTGTGTTGCTTT+AGG | - | chr1_3:54701917-54701936 | None:intergenic | 45.0% |
| CAGTATGGGACATACTACAG+AGG | + | chr1_3:54701926-54701945 | Msa0125900:intron | 45.0% | |
| ! | ATGCTGGAGACAAACTTGCT+TGG | - | chr1_3:54702190-54702209 | None:intergenic | 45.0% |
| !! | TCTGTCTTATTGGCTCTCTG+CGG | + | chr1_3:54702307-54702326 | Msa0125900:intron | 45.0% |
| TACGATGGAAGCAAAGGATC+AGG | - | chr1_3:54702666-54702685 | None:intergenic | 45.0% | |
| ! | CGGTTTTACGATGGAAGCAA+AGG | - | chr1_3:54702672-54702691 | None:intergenic | 45.0% |
| TTGGTCCCTTGAATCGCTTA+TGG | + | chr1_3:54702793-54702812 | Msa0125900:intron | 45.0% | |
| TGGTCCCTTGAATCGCTTAT+GGG | + | chr1_3:54702794-54702813 | Msa0125900:intron | 45.0% | |
| CGATCCCATAAGCGATTCAA+GGG | - | chr1_3:54702801-54702820 | None:intergenic | 45.0% | |
| CCTTGAATCGCTTATGGGAT+CGG | + | chr1_3:54702799-54702818 | Msa0125900:intron | 45.0% | |
| TTATGGGATCGGTGGTTTGA+AGG | + | chr1_3:54702810-54702829 | Msa0125900:intron | 45.0% | |
| GAATCACATGACCCATCACC+GGG | + | chr1_3:54700152-54700171 | Msa0125900:CDS | 50.0% | |
| GCCTCCTATGCTATGAAGCA+CGG | + | chr1_3:54700448-54700467 | Msa0125900:intron | 50.0% | |
| TCCGTGCTTCATAGCATAGG+AGG | - | chr1_3:54700452-54700471 | None:intergenic | 50.0% | |
| GACTCGCTAACAACAGTGGA+TGG | - | chr1_3:54700785-54700804 | None:intergenic | 50.0% | |
| TGAGGACTCGCTAACAACAG+TGG | - | chr1_3:54700789-54700808 | None:intergenic | 50.0% | |
| GTGAGGGATGTGTTGAGACT+CGG | + | chr1_3:54701368-54701387 | Msa0125900:intron | 50.0% | |
| CCGATCCCATAAGCGATTCA+AGG | - | chr1_3:54702802-54702821 | None:intergenic | 50.0% | |
| TGAATCGCTTATGGGATCGG+TGG | + | chr1_3:54702802-54702821 | Msa0125900:intron | 50.0% | |
| TCTGCAGCCTTGCGAATCTT+GGG | - | chr1_3:54702838-54702857 | None:intergenic | 50.0% | |
| ATCTGCAGCCTTGCGAATCT+TGG | - | chr1_3:54702839-54702858 | None:intergenic | 50.0% | |
| CTGAGACTGAACCCGGTGAT+GGG | - | chr1_3:54700166-54700185 | None:intergenic | 55.0% | |
| ACTGAGACTGAACCCGGTGA+TGG | - | chr1_3:54700167-54700186 | None:intergenic | 55.0% | |
| TGAAGCACGGATACCGACAC+CGG | + | chr1_3:54700461-54700480 | Msa0125900:intron | 55.0% | |
| !! | GTTGGTGTCGGACAGGACTA+TGG | + | chr1_3:54700541-54700560 | Msa0125900:intron | 55.0% |
| TGCAGCCTTGCGAATCTTGG+GGG | - | chr1_3:54702836-54702855 | None:intergenic | 55.0% | |
| CTGCAGCCTTGCGAATCTTG+GGG | - | chr1_3:54702837-54702856 | None:intergenic | 55.0% | |
| GTTCGTGTCGTGTCCGGTGT+CGG | - | chr1_3:54700477-54700496 | None:intergenic | 60.0% | |
| ! | GTCGGTGTTCGTGTCGTGTC+CGG | - | chr1_3:54700483-54700502 | None:intergenic | 60.0% |
| ! | GGTGTCGGACAGGACTATGG+TGG | + | chr1_3:54700544-54700563 | Msa0125900:intron | 60.0% |
| CGACTTAGAGTCGCGACAGG+AGG | - | chr1_3:54701296-54701315 | None:intergenic | 60.0% | |
| !! | CGTCGACTTAGAGTCGCGAC+AGG | - | chr1_3:54701299-54701318 | None:intergenic | 60.0% |
| GAAGGCCCCCAAGATTCGCA+AGG | + | chr1_3:54702828-54702847 | Msa0125900:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54699801 | 54703330 | 54699801 | ID=Msa0125900;Name=Msa0125900 |
| chr1_3 | mRNA | 54699801 | 54703330 | 54699801 | ID=Msa0125900-mRNA-1;Parent=Msa0125900;Name=Msa0125900-mRNA-1;_AED=0.21;_eAED=0.21;_QI=325|0.66|0.75|0.75|0.33|0.25|4|0|82 |
| chr1_3 | exon | 54699801 | 54700269 | 54699801 | ID=Msa0125900-mRNA-1:exon:16878;Parent=Msa0125900-mRNA-1 |
| chr1_3 | exon | 54702467 | 54702519 | 54702467 | ID=Msa0125900-mRNA-1:exon:16879;Parent=Msa0125900-mRNA-1 |
| chr1_3 | exon | 54702638 | 54702682 | 54702638 | ID=Msa0125900-mRNA-1:exon:16880;Parent=Msa0125900-mRNA-1 |
| chr1_3 | exon | 54703327 | 54703330 | 54703327 | ID=Msa0125900-mRNA-1:exon:16881;Parent=Msa0125900-mRNA-1 |
| chr1_3 | five_prime_UTR | 54699801 | 54700125 | 54699801 | ID=Msa0125900-mRNA-1:five_prime_utr;Parent=Msa0125900-mRNA-1 |
| chr1_3 | CDS | 54700126 | 54700269 | 54700126 | ID=Msa0125900-mRNA-1:cds;Parent=Msa0125900-mRNA-1 |
| chr1_3 | CDS | 54702467 | 54702519 | 54702467 | ID=Msa0125900-mRNA-1:cds;Parent=Msa0125900-mRNA-1 |
| chr1_3 | CDS | 54702638 | 54702682 | 54702638 | ID=Msa0125900-mRNA-1:cds;Parent=Msa0125900-mRNA-1 |
| chr1_3 | CDS | 54703327 | 54703330 | 54703327 | ID=Msa0125900-mRNA-1:cds;Parent=Msa0125900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
