Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125940 | sp|Q1G3L1|TIM21_ARATH | 70.874 | 206 | 58 | 2 | 40 | 244 | 65 | 269 | 5.51e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125940 | A0A072VM55 | 98.394 | 249 | 3 | 1 | 1 | 249 | 1 | 248 | 4.60e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078240 | Msa0125940 | 0.843504 | 1.345737e-58 | -8.615850e-47 |
| Msa0125940 | Msa0170900 | 0.813083 | 3.063190e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125940 | MtrunA17_Chr1g0188711 | 98.394 | 249 | 3 | 1 | 1 | 249 | 1 | 248 | 0.0 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125940 | AT4G00026.1 | 70.874 | 206 | 58 | 2 | 40 | 244 | 65 | 269 | 5.60e-91 | 270 |
Find 98 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACCATAACCTGTAAT+TGG | 0.168759 | 1_3:+54785335 | None:intergenic |
| TGTGAAGTACATTGAGTTTC+TGG | 0.196319 | 1_3:-54783644 | Msa0125940:three_prime_UTR |
| GAAGAAGGAGGAGGGAGAAT+TGG | 0.220724 | 1_3:+54787880 | None:intergenic |
| CAATGCAGGTCCTTGATATT+TGG | 0.239521 | 1_3:-54783955 | Msa0125940:intron |
| TCTCATCTAGACTACTTGTT+TGG | 0.252981 | 1_3:+54784769 | None:intergenic |
| AAGAAGGAGGAGGGAGAATT+GGG | 0.255631 | 1_3:+54787881 | None:intergenic |
| TACAGTCTGGTCATTCTTGC+AGG | 0.260868 | 1_3:-54786513 | Msa0125940:CDS |
| AAAACGGCGCCGGTTTCTTA+TGG | 0.267817 | 1_3:+54788081 | None:intergenic |
| TACAGGTTAATTTCTTTATC+CGG | 0.292822 | 1_3:-54784933 | Msa0125940:intron |
| CTGGTCATTCTTGCAGGGCT+TGG | 0.297184 | 1_3:-54786507 | Msa0125940:CDS |
| TATTAAACTCTTTACTCTTT+GGG | 0.301931 | 1_3:+54786435 | None:intergenic |
| CTTGGAGTTGCGGCTGCTGC+TGG | 0.310884 | 1_3:-54786489 | Msa0125940:CDS |
| CTCATCTAGACTACTTGTTT+GGG | 0.313277 | 1_3:+54784770 | None:intergenic |
| TTCTCCAGCACAACTAATTC+TGG | 0.313380 | 1_3:-54784815 | Msa0125940:CDS |
| CCTCCTCCTTCTTCCTTCCT+AGG | 0.329285 | 1_3:-54787871 | Msa0125940:intron |
| AAAGAATTCCCAACAGGGTT+TGG | 0.335930 | 1_3:-54785289 | Msa0125940:CDS |
| GCTGACAATTTCATATATCT+TGG | 0.340052 | 1_3:-54783669 | Msa0125940:three_prime_UTR |
| GCAGATGCGAGGAAAAGTTT+TGG | 0.341847 | 1_3:-54783774 | Msa0125940:three_prime_UTR |
| GGATCCCCAATTACAGGTTA+TGG | 0.342971 | 1_3:-54785341 | Msa0125940:CDS |
| CTGCGAATGCGAAACATGTT+TGG | 0.349492 | 1_3:+54787991 | None:intergenic |
| CACAAATGTTACCGGCTTCT+CGG | 0.372686 | 1_3:+54786548 | None:intergenic |
| CGAGAAGCCGGTAACATTTG+TGG | 0.402449 | 1_3:-54786547 | Msa0125940:CDS |
| AGGATTGGATCCCCAATTAC+AGG | 0.409135 | 1_3:-54785347 | Msa0125940:CDS |
| GTTGGAATTGCAGAAAACTA+TGG | 0.412465 | 1_3:-54787769 | Msa0125940:CDS |
| CCTGACCATAACCTGTAATT+GGG | 0.414561 | 1_3:+54785336 | None:intergenic |
| AGGAGGGAGAATTGGGGCAT+TGG | 0.416479 | 1_3:+54787888 | None:intergenic |
| CTCGTCAAAGAATTCCCAAC+AGG | 0.416592 | 1_3:-54785295 | Msa0125940:CDS |
| TGATGAACAAAGTGCATTGC+GGG | 0.418584 | 1_3:+54787936 | None:intergenic |
| GAATTTGAATCTCAATTCTC+AGG | 0.419715 | 1_3:-54783833 | Msa0125940:three_prime_UTR |
| CCTCCTGTCGAACAAGGAAC+TGG | 0.424858 | 1_3:+54783902 | None:intergenic |
| TCATCGGTCCAAACCCTGTT+GGG | 0.437968 | 1_3:+54785281 | None:intergenic |
| ACAGGTTAATTTCTTTATCC+GGG | 0.440134 | 1_3:-54784932 | Msa0125940:intron |
| CTTCCAGTTCCTTGTTCGAC+AGG | 0.440654 | 1_3:-54783905 | Msa0125940:three_prime_UTR |
| TTCCAGGTCAGAGGGAGGAT+TGG | 0.449707 | 1_3:-54785362 | Msa0125940:intron |
| GACTCCAGAATTAGTTGTGC+TGG | 0.450239 | 1_3:+54784811 | None:intergenic |
| TGAAGAGTGAAGACTGAAGA+GGG | 0.454467 | 1_3:+54788035 | None:intergenic |
| TACTTGTTTGGGTTGTAAGA+AGG | 0.465698 | 1_3:+54784781 | None:intergenic |
| GATATTTGGTCCATTACTGT+AGG | 0.468005 | 1_3:-54783941 | Msa0125940:three_prime_UTR |
| ACAAATGTTACCGGCTTCTC+GGG | 0.475865 | 1_3:+54786549 | None:intergenic |
| AAGAATTCAAGATGATGGTC+AGG | 0.477460 | 1_3:-54786131 | Msa0125940:intron |
| CCCAATTACAGGTTATGGTC+AGG | 0.479884 | 1_3:-54785336 | Msa0125940:CDS |
| CTCATCGGTCCAAACCCTGT+TGG | 0.484272 | 1_3:+54785280 | None:intergenic |
| CTCAAAAGAATTCAAGATGA+TGG | 0.488801 | 1_3:-54786136 | Msa0125940:CDS |
| ACTTGTTTGGGTTGTAAGAA+GGG | 0.491275 | 1_3:+54784782 | None:intergenic |
| AGAAGGAGGAGGGAGAATTG+GGG | 0.502304 | 1_3:+54787882 | None:intergenic |
| AAAGGATAACCATAAGAAAC+CGG | 0.509469 | 1_3:-54788090 | Msa0125940:five_prime_UTR |
| CCAGTTCCTTGTTCGACAGG+AGG | 0.511242 | 1_3:-54783902 | Msa0125940:three_prime_UTR |
| GCCGGTAACATTTGTGGAGG+GGG | 0.515141 | 1_3:-54786541 | Msa0125940:CDS |
| AGACATAAACCTTGTCAAAG+AGG | 0.517648 | 1_3:+54787741 | None:intergenic |
| GTGAAGAGTGAAGACTGAAG+AGG | 0.532891 | 1_3:+54788034 | None:intergenic |
| ATATAATATTCCCGAGAAGC+CGG | 0.533779 | 1_3:-54786559 | Msa0125940:CDS |
| TCTTGCAGGGCTTGGAGTTG+CGG | 0.534096 | 1_3:-54786499 | Msa0125940:CDS |
| ACAGTCTGGTCATTCTTGCA+GGG | 0.534491 | 1_3:-54786512 | Msa0125940:CDS |
| GCAAACACTTCACTTCAAAA+CGG | 0.534538 | 1_3:+54788065 | None:intergenic |
| AGAATTGCAGCCTACAGTAA+TGG | 0.539766 | 1_3:+54783931 | None:intergenic |
| ACAAAGTGCATTGCGGGTGC+AGG | 0.546641 | 1_3:+54787942 | None:intergenic |
| TCAAAGGAGCTGACGGTGAG+TGG | 0.548735 | 1_3:-54784873 | Msa0125940:CDS |
| TTCTCGGGAATATTATATGT+TGG | 0.548981 | 1_3:+54786564 | None:intergenic |
| TATTGGATTTCCAGGTCAGA+GGG | 0.556067 | 1_3:-54785370 | Msa0125940:intron |
| CTTTCACCTCCTGTCGAACA+AGG | 0.558425 | 1_3:+54783896 | None:intergenic |
| CCTAGGAAGGAAGAAGGAGG+AGG | 0.559147 | 1_3:+54787871 | None:intergenic |
| AAGGATTTAGAAGCAAGTAA+AGG | 0.559872 | 1_3:-54788108 | None:intergenic |
| TCAAATGCATCGTCTGAGCA+AGG | 0.560458 | 1_3:-54787718 | Msa0125940:CDS |
| AGAATTAGTTGTGCTGGAGA+AGG | 0.564476 | 1_3:+54784817 | None:intergenic |
| AGGAGGTGAAAGTTGAAAGA+AGG | 0.567784 | 1_3:-54783885 | Msa0125940:three_prime_UTR |
| ACAAGTAGTCTAGATGAGAA+AGG | 0.572207 | 1_3:-54784765 | Msa0125940:intron |
| CAGGGTTTGGACCGATGAGG+AGG | 0.578696 | 1_3:-54785276 | Msa0125940:CDS |
| CAGTAATGGACCAAATATCA+AGG | 0.579927 | 1_3:+54783945 | None:intergenic |
| CAAATGCATCGTCTGAGCAA+GGG | 0.589240 | 1_3:-54787717 | Msa0125940:CDS |
| GTATTGGATTTCCAGGTCAG+AGG | 0.591215 | 1_3:-54785371 | Msa0125940:intron |
| ATGTTCAACACCCTCCTCAT+CGG | 0.592436 | 1_3:+54785265 | None:intergenic |
| AGCCGGTAACATTTGTGGAG+GGG | 0.592583 | 1_3:-54786542 | Msa0125940:CDS |
| CAGGTTAATTTCTTTATCCG+GGG | 0.595507 | 1_3:-54784931 | Msa0125940:CDS |
| AACAAACCTAGGAAGGAAGA+AGG | 0.611477 | 1_3:+54787865 | None:intergenic |
| AAGCCGGTAACATTTGTGGA+GGG | 0.611693 | 1_3:-54786543 | Msa0125940:CDS |
| ACTTCACTTCAAAACGGCGC+CGG | 0.611997 | 1_3:+54788071 | None:intergenic |
| TATGTTGGAGCATCATCGAA+TGG | 0.615482 | 1_3:+54786579 | None:intergenic |
| AAGTACATTGAGTTTCTGGA+AGG | 0.616481 | 1_3:-54783640 | Msa0125940:three_prime_UTR |
| GGGTGCAGGATGCGAGTGCA+CGG | 0.625367 | 1_3:+54787956 | None:intergenic |
| AGAATTGGGGCATTGGAACG+AGG | 0.625833 | 1_3:+54787895 | None:intergenic |
| ATTAAGAACCTGCAGATGCG+AGG | 0.625890 | 1_3:-54783785 | Msa0125940:three_prime_UTR |
| GTATTCGCTGAGATGTTCAA+AGG | 0.627485 | 1_3:-54784889 | Msa0125940:CDS |
| CTAGGAAGGAAGAAGGAGGA+GGG | 0.628489 | 1_3:+54787872 | None:intergenic |
| CTGACCATAACCTGTAATTG+GGG | 0.635184 | 1_3:+54785337 | None:intergenic |
| GAGATGTTCAAAGGAGCTGA+CGG | 0.637033 | 1_3:-54784880 | Msa0125940:CDS |
| ATGGATCAACCTCTTTGACA+AGG | 0.641918 | 1_3:-54787750 | Msa0125940:CDS |
| GAAGCCGGTAACATTTGTGG+AGG | 0.643600 | 1_3:-54786544 | Msa0125940:CDS |
| TGGATTTCCAGGTCAGAGGG+AGG | 0.644772 | 1_3:-54785367 | Msa0125940:intron |
| TAACAATAAATTAGAATACA+CGG | 0.653144 | 1_3:+54783694 | None:intergenic |
| AGGGTTTGGACCGATGAGGA+GGG | 0.654864 | 1_3:-54785275 | Msa0125940:CDS |
| CAACAGGGTTTGGACCGATG+AGG | 0.658274 | 1_3:-54785279 | Msa0125940:CDS |
| GGAGGGTGTTGAACATGTCG+AGG | 0.659911 | 1_3:-54785258 | Msa0125940:intron |
| TCGTCAAAGAATTCCCAACA+GGG | 0.663020 | 1_3:-54785294 | Msa0125940:CDS |
| AAACCTAGGAAGGAAGAAGG+AGG | 0.666916 | 1_3:+54787868 | None:intergenic |
| TAGGTACAAGATTTATAACA+AGG | 0.670702 | 1_3:-54786161 | Msa0125940:CDS |
| TGCAAGAATGACCAGACTGT+AGG | 0.695526 | 1_3:+54786515 | None:intergenic |
| ATGATGAACAAAGTGCATTG+CGG | 0.701531 | 1_3:+54787935 | None:intergenic |
| TTGGAACGAGGAAGAGAACG+TGG | 0.726769 | 1_3:+54787907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTATTGATTTTAATTA+AGG | - | chr1_3:54784034-54784053 | Msa0125940:intron | 10.0% |
| !!! | AAATTTTTAAATCTTCTTTA+TGG | - | chr1_3:54786627-54786646 | Msa0125940:intron | 10.0% |
| !!! | TTTTTTTGCTTAAATAATGA+AGG | - | chr1_3:54784454-54784473 | Msa0125940:intron | 15.0% |
| !!! | AGTAGTTTTTTTTTTTTTAG+AGG | - | chr1_3:54784484-54784503 | Msa0125940:intron | 15.0% |
| !!! | GTAGTTTTTTTTTTTTTAGA+GGG | - | chr1_3:54784485-54784504 | Msa0125940:intron | 15.0% |
| !! | TATTATCAAAATTCAAACAT+AGG | + | chr1_3:54785792-54785811 | None:intergenic | 15.0% |
| !!! | ATGTTTGAATTTTGATAATA+AGG | - | chr1_3:54785792-54785811 | Msa0125940:intron | 15.0% |
| !!! | TATATTATCATTTTTCATTG+AGG | + | chr1_3:54785859-54785878 | None:intergenic | 15.0% |
| !! | ATATATAATATAAAATCACC+AGG | - | chr1_3:54785874-54785893 | Msa0125940:intron | 15.0% |
| !!! | GTAAATTGTATGTTAATTTT+TGG | - | chr1_3:54786211-54786230 | Msa0125940:intron | 15.0% |
| !!! | ACATTATTTGTATTATTTCT+CGG | - | chr1_3:54786598-54786617 | Msa0125940:CDS | 15.0% |
| !!! | ATGAAATGATATAGTATTTT+AGG | - | chr1_3:54787162-54787181 | Msa0125940:intron | 15.0% |
| !! | ATTGCATGTTTATAAATATT+GGG | - | chr1_3:54787346-54787365 | Msa0125940:intron | 15.0% |
| !! | TAAACTTGAAGAATAAATTA+TGG | - | chr1_3:54787489-54787508 | Msa0125940:intron | 15.0% |
| !! | TTATTTATAAGAATATGAAC+TGG | + | chr1_3:54787660-54787679 | None:intergenic | 15.0% |
| !! | TAACAATAAATTAGAATACA+CGG | + | chr1_3:54787963-54787982 | None:intergenic | 15.0% |
| !! | TTAATTAAGGAATGATGTTT+AGG | - | chr1_3:54784047-54784066 | Msa0125940:intron | 20.0% |
| !! | AACTTCATTAAAAATTATGG+TGG | + | chr1_3:54784216-54784235 | None:intergenic | 20.0% |
| !!! | ACCATAATTTTTAATGAAGT+TGG | - | chr1_3:54784215-54784234 | Msa0125940:intron | 20.0% |
| !! | ACCAACTTCATTAAAAATTA+TGG | + | chr1_3:54784219-54784238 | None:intergenic | 20.0% |
| !!! | CATATTTTCTAGTATTGATT+GGG | + | chr1_3:54784901-54784920 | None:intergenic | 20.0% |
| !!! | TCATATTTTCTAGTATTGAT+TGG | + | chr1_3:54784902-54784921 | None:intergenic | 20.0% |
| !! | AAAAGAGTTAAAAAATGTTG+AGG | - | chr1_3:54785050-54785069 | Msa0125940:intron | 20.0% |
| !! | TATTAAACTCTTTACTCTTT+GGG | + | chr1_3:54785222-54785241 | None:intergenic | 20.0% |
| !! | ATATTAAACTCTTTACTCTT+TGG | + | chr1_3:54785223-54785242 | None:intergenic | 20.0% |
| !! | AACAATCAGAACAAAATAAA+TGG | + | chr1_3:54785461-54785480 | None:intergenic | 20.0% |
| !!! | AATATTTAAGTTCCTCTAAA+TGG | + | chr1_3:54785607-54785626 | None:intergenic | 20.0% |
| !! | TATACAAAGACAACTAAAAT+TGG | - | chr1_3:54785718-54785737 | Msa0125940:intron | 20.0% |
| !! | ATACAAAGACAACTAAAATT+GGG | - | chr1_3:54785719-54785738 | Msa0125940:intron | 20.0% |
| !!! | AATTTTTTGGTAGAACAAAA+AGG | + | chr1_3:54786157-54786176 | None:intergenic | 20.0% |
| !!! | TTTTTAAATCTTCTTTATGG+TGG | - | chr1_3:54786630-54786649 | Msa0125940:intron | 20.0% |
| !!! | TTTTAAATCTTCTTTATGGT+GGG | - | chr1_3:54786631-54786650 | Msa0125940:intron | 20.0% |
| !! | CTTGTTTCATCAAAATAAAT+GGG | + | chr1_3:54786929-54786948 | None:intergenic | 20.0% |
| !! | ACTTGTTTCATCAAAATAAA+TGG | + | chr1_3:54786930-54786949 | None:intergenic | 20.0% |
| !!! | ATGAAACAAGTTTTTTTGAA+GGG | - | chr1_3:54786939-54786958 | Msa0125940:intron | 20.0% |
| !! | CATTGCATGTTTATAAATAT+TGG | - | chr1_3:54787345-54787364 | Msa0125940:intron | 20.0% |
| !! | TGTTTATAAATATTGGGTAT+CGG | - | chr1_3:54787352-54787371 | Msa0125940:intron | 20.0% |
| !!! | AACAGTTAAACACAATTTTT+CGG | + | chr1_3:54787447-54787466 | None:intergenic | 20.0% |
| ! | AAAGTGAAGTGAAATTGAAT+GGG | + | chr1_3:54783821-54783840 | None:intergenic | 25.0% |
| ! | TAAAGTGAAGTGAAATTGAA+TGG | + | chr1_3:54783822-54783841 | None:intergenic | 25.0% |
| !! | TTATGTATTTTTCTCTCTCT+AGG | - | chr1_3:54783861-54783880 | Msa0125940:three_prime_UTR | 25.0% |
| ! | AATGAGTAATGCATACATTA+GGG | + | chr1_3:54784019-54784038 | None:intergenic | 25.0% |
| ! | AAATGAGTAATGCATACATT+AGG | + | chr1_3:54784020-54784039 | None:intergenic | 25.0% |
| !!! | TGTGGAATTTTAAAGTTGTT+AGG | - | chr1_3:54784177-54784196 | Msa0125940:intron | 25.0% |
| ! | AAAACACTCTAATTACCAAT+TGG | - | chr1_3:54784268-54784287 | Msa0125940:intron | 25.0% |
| ! | TAAACACTCTAATTACCAAT+TGG | - | chr1_3:54784321-54784340 | Msa0125940:intron | 25.0% |
| ! | AAACACTCTAATTACCAATT+GGG | - | chr1_3:54784269-54784288 | Msa0125940:intron | 25.0% |
| !! | GTTTTACACAGCATTTTATT+TGG | - | chr1_3:54784959-54784978 | Msa0125940:intron | 25.0% |
| ! | AGTAAAGAGTTTAATATCCT+TGG | - | chr1_3:54785226-54785245 | Msa0125940:intron | 25.0% |
| ! | TCAGATAAATAATATGACCA+AGG | + | chr1_3:54785246-54785265 | None:intergenic | 25.0% |
| !!! | CTTATTGATTGTTGAGTTTT+GGG | - | chr1_3:54785314-54785333 | Msa0125940:CDS | 25.0% |
| ! | TAGGTACAAGATTTATAACA+AGG | - | chr1_3:54785493-54785512 | Msa0125940:intron | 25.0% |
| !!! | TTATTTTGGTTTTCTGATTC+AGG | + | chr1_3:54785577-54785596 | None:intergenic | 25.0% |
| !!! | TAAATGGAGATGCTTTATTT+TGG | + | chr1_3:54785591-54785610 | None:intergenic | 25.0% |
| !!! | CATAGTTTTATTTAGTGCTT+TGG | + | chr1_3:54786187-54786206 | None:intergenic | 25.0% |
| !! | TGCAGAAACATACATATTTT+AGG | - | chr1_3:54786449-54786468 | Msa0125940:intron | 25.0% |
| ! | AGATAACTATGAAAAAGGAA+AGG | - | chr1_3:54786534-54786553 | Msa0125940:CDS | 25.0% |
| ! | TACAGGTTAATTTCTTTATC+CGG | - | chr1_3:54786721-54786740 | Msa0125940:intron | 25.0% |
| !!! | GATGAAACAAGTTTTTTTGA+AGG | - | chr1_3:54786938-54786957 | Msa0125940:intron | 25.0% |
| ! | ATGTGGAACATAAGATAATT+TGG | + | chr1_3:54787102-54787121 | None:intergenic | 25.0% |
| ! | GTTCCACATATTTAATTAAG+TGG | - | chr1_3:54787113-54787132 | Msa0125940:intron | 25.0% |
| ! | TCACCACTTAATTAAATATG+TGG | + | chr1_3:54787119-54787138 | None:intergenic | 25.0% |
| ! | GAAAAATTGTGTTTAACTGT+TGG | - | chr1_3:54787446-54787465 | Msa0125940:intron | 25.0% |
| !!! | GTTTCTGCATATCAATTTTT+TGG | - | chr1_3:54787587-54787606 | Msa0125940:intron | 25.0% |
| AAAGGATAACCATAAGAAAC+CGG | - | chr1_3:54783564-54783583 | Msa0125940:three_prime_UTR | 30.0% | |
| !!! | TGTTTGGTTTTGATTCTATG+CGG | + | chr1_3:54783650-54783669 | None:intergenic | 30.0% |
| !! | AAGTGAAATTGAATGGGTTT+TGG | + | chr1_3:54783815-54783834 | None:intergenic | 30.0% |
| ! | AAGGAATGATGTTTAGGTTT+AGG | - | chr1_3:54784053-54784072 | Msa0125940:intron | 30.0% |
| AACACTCTAATTACCAATTG+GGG | - | chr1_3:54784270-54784289 | Msa0125940:intron | 30.0% | |
| TTTGCTTAAATAATGAAGGC+TGG | - | chr1_3:54784458-54784477 | Msa0125940:intron | 30.0% | |
| ATGTAGAAATGTTAGTAGCA+AGG | - | chr1_3:54784590-54784609 | Msa0125940:intron | 30.0% | |
| TCATACGAAGTTATCACATA+TGG | - | chr1_3:54784638-54784657 | Msa0125940:intron | 30.0% | |
| ATTTGCATCCAAGTCATAAA+TGG | + | chr1_3:54784681-54784700 | None:intergenic | 30.0% | |
| TCACAATGAAATTCACGTAT+AGG | + | chr1_3:54784725-54784744 | None:intergenic | 30.0% | |
| TTCTCGGGAATATTATATGT+TGG | + | chr1_3:54785093-54785112 | None:intergenic | 30.0% | |
| TCTGAAAGAAAAATGCTACA+TGG | - | chr1_3:54785261-54785280 | Msa0125940:CDS | 30.0% | |
| AACTCAACAATCAATAAGCA+TGG | + | chr1_3:54785312-54785331 | None:intergenic | 30.0% | |
| !! | GCTTATTGATTGTTGAGTTT+TGG | - | chr1_3:54785313-54785332 | Msa0125940:CDS | 30.0% |
| ATTTAGTGCTACATAGCAAA+AGG | + | chr1_3:54785401-54785420 | None:intergenic | 30.0% | |
| GATTGTTATAAGCTGATGAT+AGG | - | chr1_3:54785474-54785493 | Msa0125940:intron | 30.0% | |
| CTCAAAAGAATTCAAGATGA+TGG | - | chr1_3:54785518-54785537 | Msa0125940:intron | 30.0% | |
| ! | AATAAAGCATCTCCATTTAG+AGG | - | chr1_3:54785592-54785611 | Msa0125940:intron | 30.0% |
| GTATATCTTCTTCCTACAAA+TGG | + | chr1_3:54785703-54785722 | None:intergenic | 30.0% | |
| ACTAAAATTGGGTGATGAAA+TGG | - | chr1_3:54785730-54785749 | Msa0125940:intron | 30.0% | |
| !!! | TGCTACTTTTACACTGATAA+CGG | + | chr1_3:54785832-54785851 | None:intergenic | 30.0% |
| TTTACTACTACTGGATCAAT+AGG | + | chr1_3:54785907-54785926 | None:intergenic | 30.0% | |
| ! | AAGTGATCTTTTACTACTAC+TGG | + | chr1_3:54785916-54785935 | None:intergenic | 30.0% |
| CTAGCTTACTTCATATTGAA+AGG | + | chr1_3:54786019-54786038 | None:intergenic | 30.0% | |
| CTTTCAATATGAAGTAAGCT+AGG | - | chr1_3:54786017-54786036 | Msa0125940:intron | 30.0% | |
| ATATGAAGTAAGCTAGGTAT+AGG | - | chr1_3:54786023-54786042 | Msa0125940:intron | 30.0% | |
| TTGTTCAGGGTAAAAAACTT+CGG | + | chr1_3:54786108-54786127 | None:intergenic | 30.0% | |
| CCTCTTTCATTTATTGTTCA+GGG | + | chr1_3:54786121-54786140 | None:intergenic | 30.0% | |
| TCCTCTTTCATTTATTGTTC+AGG | + | chr1_3:54786122-54786141 | None:intergenic | 30.0% | |
| TGTCTTGATGTGAAATGTAT+TGG | - | chr1_3:54786267-54786286 | Msa0125940:intron | 30.0% | |
| TGCTCTCAAATATGTTCATT+TGG | - | chr1_3:54786696-54786715 | Msa0125940:intron | 30.0% | |
| GCTCTCAAATATGTTCATTT+GGG | - | chr1_3:54786697-54786716 | Msa0125940:intron | 30.0% | |
| ! | AATATGTTCATTTGGGTTAC+AGG | - | chr1_3:54786704-54786723 | Msa0125940:intron | 30.0% |
| ACAGGTTAATTTCTTTATCC+GGG | - | chr1_3:54786722-54786741 | Msa0125940:intron | 30.0% | |
| !! | CATCAAAATAAATGGGCTAT+TGG | + | chr1_3:54786922-54786941 | None:intergenic | 30.0% |
| AGGGATTAAGTGAGATATTT+GGG | + | chr1_3:54787220-54787239 | None:intergenic | 30.0% | |
| AAGGGATTAAGTGAGATATT+TGG | + | chr1_3:54787221-54787240 | None:intergenic | 30.0% | |
| TAATCCCTTGCTTACATTAA+AGG | - | chr1_3:54787232-54787251 | Msa0125940:intron | 30.0% | |
| AATCCCTTGCTTACATTAAA+GGG | - | chr1_3:54787233-54787252 | Msa0125940:intron | 30.0% | |
| TAAACATGCAATGTAAGCAA+GGG | + | chr1_3:54787338-54787357 | None:intergenic | 30.0% | |
| ATAAACATGCAATGTAAGCA+AGG | + | chr1_3:54787339-54787358 | None:intergenic | 30.0% | |
| ! | GTCCATTTTATCTTGCATTT+TGG | - | chr1_3:54787380-54787399 | Msa0125940:intron | 30.0% |
| !!! | CTCTCCCATTTATTTTAGTT+TGG | - | chr1_3:54787613-54787632 | Msa0125940:intron | 30.0% |
| CGGACCAAACTAAAATAAAT+GGG | + | chr1_3:54787620-54787639 | None:intergenic | 30.0% | |
| TCGGACCAAACTAAAATAAA+TGG | + | chr1_3:54787621-54787640 | None:intergenic | 30.0% | |
| GAATTTGAATCTCAATTCTC+AGG | - | chr1_3:54787821-54787840 | Msa0125940:intron | 30.0% | |
| GCTGACAATTTCATATATCT+TGG | - | chr1_3:54787985-54788004 | Msa0125940:CDS | 30.0% | |
| !!! | AAGGAGTATGCTATTTTGTT+AGG | - | chr1_3:54788033-54788052 | Msa0125940:five_prime_UTR | 30.0% |
| !!! | AGGAGTATGCTATTTTGTTA+GGG | - | chr1_3:54788034-54788053 | Msa0125940:five_prime_UTR | 30.0% |
| GCAAACACTTCACTTCAAAA+CGG | + | chr1_3:54783592-54783611 | None:intergenic | 35.0% | |
| ATGATGAACAAAGTGCATTG+CGG | + | chr1_3:54783722-54783741 | None:intergenic | 35.0% | |
| ! | ATTTTTCTCTCTCTAGGTGT+TGG | - | chr1_3:54783867-54783886 | Msa0125940:three_prime_UTR | 35.0% |
| GTTGGAATTGCAGAAAACTA+TGG | - | chr1_3:54783885-54783904 | Msa0125940:three_prime_UTR | 35.0% | |
| AGACATAAACCTTGTCAAAG+AGG | + | chr1_3:54783916-54783935 | None:intergenic | 35.0% | |
| AAACAGTATTAGCGTGAAAG+TGG | + | chr1_3:54783981-54784000 | None:intergenic | 35.0% | |
| CTAAGTGTGTTTGACACAAA+TGG | - | chr1_3:54784115-54784134 | Msa0125940:intron | 35.0% | |
| ATGAGTTAGCAAGATGTCTA+TGG | + | chr1_3:54784622-54784641 | None:intergenic | 35.0% | |
| TCATAAATGGTGTAAGCGTA+AGG | + | chr1_3:54784668-54784687 | None:intergenic | 35.0% | |
| CAAATCGAAAATTTCCCACT+TGG | - | chr1_3:54784696-54784715 | Msa0125940:intron | 35.0% | |
| ! | TCTATTCTCTACCCATGTTT+TGG | - | chr1_3:54784821-54784840 | Msa0125940:CDS | 35.0% |
| CCAAAAACACTATTGTAGCA+TGG | + | chr1_3:54784854-54784873 | None:intergenic | 35.0% | |
| ! | CCATGCTACAATAGTGTTTT+TGG | - | chr1_3:54784851-54784870 | Msa0125940:CDS | 35.0% |
| ! | TTGGCGTTGTCATTTCTTAA+AGG | - | chr1_3:54784870-54784889 | Msa0125940:CDS | 35.0% |
| TGTAAAACACAGCCATTCTA+TGG | + | chr1_3:54784947-54784966 | None:intergenic | 35.0% | |
| ATATAATATTCCCGAGAAGC+CGG | - | chr1_3:54785095-54785114 | Msa0125940:intron | 35.0% | |
| ! | TGCTGGATATTCTGTTTTCA+AGG | - | chr1_3:54785182-54785201 | Msa0125940:intron | 35.0% |
| !!! | ATTGATTGTTGAGTTTTGGG+TGG | - | chr1_3:54785317-54785336 | Msa0125940:CDS | 35.0% |
| ! | AAGAATTCAAGATGATGGTC+AGG | - | chr1_3:54785523-54785542 | Msa0125940:intron | 35.0% |
| CAACACAAACTGAAGGATAT+TGG | + | chr1_3:54785643-54785662 | None:intergenic | 35.0% | |
| CAATATCCTTCAGTTTGTGT+TGG | - | chr1_3:54785641-54785660 | Msa0125940:intron | 35.0% | |
| GTTGGATATGAAATGAAGCT+GGG | - | chr1_3:54785663-54785682 | Msa0125940:intron | 35.0% | |
| TTGAAAGGATCTTTAACGAC+TGG | + | chr1_3:54786004-54786023 | None:intergenic | 35.0% | |
| TATGTCATTGAGTAGGTGAT+TGG | - | chr1_3:54786049-54786068 | Msa0125940:intron | 35.0% | |
| CCCTGAACAATAAATGAAAG+AGG | - | chr1_3:54786118-54786137 | Msa0125940:intron | 35.0% | |
| GTGAAATGTATTGGATTTCC+AGG | - | chr1_3:54786276-54786295 | Msa0125940:intron | 35.0% | |
| GTTTAGAAGACCTTTCAGAA+AGG | - | chr1_3:54786504-54786523 | Msa0125940:CDS | 35.0% | |
| GGAGGAGATAACTATGAAAA+AGG | - | chr1_3:54786529-54786548 | Msa0125940:CDS | 35.0% | |
| CAGGTTAATTTCTTTATCCG+GGG | - | chr1_3:54786723-54786742 | Msa0125940:intron | 35.0% | |
| ! | AATACTTTTCCATGTCCATG+GGG | + | chr1_3:54786750-54786769 | None:intergenic | 35.0% |
| ! | GAATACTTTTCCATGTCCAT+GGG | + | chr1_3:54786751-54786770 | None:intergenic | 35.0% |
| !! | ACTTGTTTGGGTTGTAAGAA+GGG | + | chr1_3:54786875-54786894 | None:intergenic | 35.0% |
| !! | TACTTGTTTGGGTTGTAAGA+AGG | + | chr1_3:54786876-54786895 | None:intergenic | 35.0% |
| CTCATCTAGACTACTTGTTT+GGG | + | chr1_3:54786887-54786906 | None:intergenic | 35.0% | |
| TCTCATCTAGACTACTTGTT+TGG | + | chr1_3:54786888-54786907 | None:intergenic | 35.0% | |
| ACAAGTAGTCTAGATGAGAA+AGG | - | chr1_3:54786889-54786908 | Msa0125940:intron | 35.0% | |
| GGGATTAAGTGAGATATTTG+GGG | + | chr1_3:54787219-54787238 | None:intergenic | 35.0% | |
| TTGCCCTTTAATGTAAGCAA+GGG | + | chr1_3:54787239-54787258 | None:intergenic | 35.0% | |
| GGCCAAAATGCAAGATAAAA+TGG | + | chr1_3:54787385-54787404 | None:intergenic | 35.0% | |
| GACATGAACAAGATGATACT+CGG | + | chr1_3:54787406-54787425 | None:intergenic | 35.0% | |
| !! | TTTTCGGACTAGATTATGCA+AGG | + | chr1_3:54787431-54787450 | None:intergenic | 35.0% |
| CTAATCTCATTACTCAATGC+AGG | - | chr1_3:54787685-54787704 | Msa0125940:intron | 35.0% | |
| !! | CAGTAATGGACCAAATATCA+AGG | + | chr1_3:54787712-54787731 | None:intergenic | 35.0% |
| GATATTTGGTCCATTACTGT+AGG | - | chr1_3:54787713-54787732 | Msa0125940:CDS | 35.0% | |
| TGTGAAGTACATTGAGTTTC+TGG | - | chr1_3:54788010-54788029 | Msa0125940:five_prime_UTR | 35.0% | |
| ! | AAGTACATTGAGTTTCTGGA+AGG | - | chr1_3:54788014-54788033 | Msa0125940:five_prime_UTR | 35.0% |
| !!! | GGAGTATGCTATTTTGTTAG+GGG | - | chr1_3:54788035-54788054 | Msa0125940:five_prime_UTR | 35.0% |
| TGAAGAGTGAAGACTGAAGA+GGG | + | chr1_3:54783622-54783641 | None:intergenic | 40.0% | |
| TGATGAACAAAGTGCATTGC+GGG | + | chr1_3:54783721-54783740 | None:intergenic | 40.0% | |
| AACAAACCTAGGAAGGAAGA+AGG | + | chr1_3:54783792-54783811 | None:intergenic | 40.0% | |
| !!! | GTTTTGGAACAAACCTAGGA+AGG | + | chr1_3:54783799-54783818 | None:intergenic | 40.0% |
| !!! | ATGGGTTTTGGAACAAACCT+AGG | + | chr1_3:54783803-54783822 | None:intergenic | 40.0% |
| ATGGATCAACCTCTTTGACA+AGG | - | chr1_3:54783904-54783923 | Msa0125940:three_prime_UTR | 40.0% | |
| GCAAGGGAAAAACACTGAAA+AGG | - | chr1_3:54783953-54783972 | Msa0125940:intron | 40.0% | |
| GCTTAAATAATGAAGGCTGG+TGG | - | chr1_3:54784461-54784480 | Msa0125940:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | + | chr1_3:54784540-54784559 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr1_3:54784541-54784560 | None:intergenic | 40.0% | |
| CGCTTACACCATTTATGACT+TGG | - | chr1_3:54784670-54784689 | Msa0125940:intron | 40.0% | |
| TCACGTATAGGTTACCAAGT+GGG | + | chr1_3:54784713-54784732 | None:intergenic | 40.0% | |
| TTCACGTATAGGTTACCAAG+TGG | + | chr1_3:54784714-54784733 | None:intergenic | 40.0% | |
| ! | TATGTTGGAGCATCATCGAA+TGG | + | chr1_3:54785078-54785097 | None:intergenic | 40.0% |
| !!! | AGTTTTGGGTGGATCCTTAT+TGG | - | chr1_3:54785328-54785347 | Msa0125940:CDS | 40.0% |
| ATCAGAATTGAGCTAGACTC+TGG | + | chr1_3:54785376-54785395 | None:intergenic | 40.0% | |
| ! | ATCCTTCAGTTTGTGTTGGT+TGG | - | chr1_3:54785645-54785664 | Msa0125940:intron | 40.0% |
| ATCCAACCAACACAAACTGA+AGG | + | chr1_3:54785650-54785669 | None:intergenic | 40.0% | |
| GGTTGGATATGAAATGAAGC+TGG | - | chr1_3:54785662-54785681 | Msa0125940:intron | 40.0% | |
| TTCTGCAGATCACCATTTGT+AGG | - | chr1_3:54785688-54785707 | Msa0125940:intron | 40.0% | |
| GGATCAATAGGAAGAAATCC+TGG | + | chr1_3:54785895-54785914 | None:intergenic | 40.0% | |
| ACTTCAATATGCAGTCAGCT+CGG | - | chr1_3:54785932-54785951 | Msa0125940:intron | 40.0% | |
| ! | TAGGTGCTATGTCATTGAGT+AGG | - | chr1_3:54785957-54785976 | Msa0125940:intron | 40.0% |
| TATGTCATTGAGTAGGTGGT+TGG | - | chr1_3:54785964-54785983 | Msa0125940:intron | 40.0% | |
| TAGGCGTTATGTCATTGAGT+AGG | - | chr1_3:54786042-54786061 | Msa0125940:intron | 40.0% | |
| ATTGAGTAGGTGATTGGAGT+TGG | - | chr1_3:54786055-54786074 | Msa0125940:intron | 40.0% | |
| TTGAGTAGGTGATTGGAGTT+GGG | - | chr1_3:54786056-54786075 | Msa0125940:intron | 40.0% | |
| !!! | CTTTGGTGCGTGCAATTTTT+TGG | + | chr1_3:54786170-54786189 | None:intergenic | 40.0% |
| TATTGGATTTCCAGGTCAGA+GGG | - | chr1_3:54786284-54786303 | Msa0125940:intron | 40.0% | |
| CTGACCATAACCTGTAATTG+GGG | + | chr1_3:54786320-54786339 | None:intergenic | 40.0% | |
| CCTGACCATAACCTGTAATT+GGG | + | chr1_3:54786321-54786340 | None:intergenic | 40.0% | |
| TCCTGACCATAACCTGTAAT+TGG | + | chr1_3:54786322-54786341 | None:intergenic | 40.0% | |
| TCGTCAAAGAATTCCCAACA+GGG | - | chr1_3:54786360-54786379 | Msa0125940:intron | 40.0% | |
| AAAGAATTCCCAACAGGGTT+TGG | - | chr1_3:54786365-54786384 | Msa0125940:intron | 40.0% | |
| TGAAAGGTCTTCTAAACCCA+GGG | + | chr1_3:54786501-54786520 | None:intergenic | 40.0% | |
| TAGAAGACCTTTCAGAAAGG+AGG | - | chr1_3:54786507-54786526 | Msa0125940:CDS | 40.0% | |
| AGAAGACCTTTCAGAAAGGA+GGG | - | chr1_3:54786508-54786527 | Msa0125940:CDS | 40.0% | |
| TGGTTCTTGGAGAGCTTAAT+TGG | - | chr1_3:54786569-54786588 | Msa0125940:CDS | 40.0% | |
| TACTTGATGTTTAGCAGCTG+TGG | - | chr1_3:54786657-54786676 | Msa0125940:intron | 40.0% | |
| ! | ATACTTTTCCATGTCCATGG+GGG | + | chr1_3:54786749-54786768 | None:intergenic | 40.0% |
| ! | CGAATACTTTTCCATGTCCA+TGG | + | chr1_3:54786752-54786771 | None:intergenic | 40.0% |
| GTATTCGCTGAGATGTTCAA+AGG | - | chr1_3:54786765-54786784 | Msa0125940:intron | 40.0% | |
| AGAATTAGTTGTGCTGGAGA+AGG | + | chr1_3:54786840-54786859 | None:intergenic | 40.0% | |
| TTCTCCAGCACAACTAATTC+TGG | - | chr1_3:54786839-54786858 | Msa0125940:intron | 40.0% | |
| !! | CATGCTTAGCATTGACTAGT+TGG | + | chr1_3:54787145-54787164 | None:intergenic | 40.0% |
| !! | AGTATTTTAGGCCTTGCACT+TGG | - | chr1_3:54787174-54787193 | Msa0125940:intron | 40.0% |
| AAGGAAAAGAACCAAGTGCA+AGG | + | chr1_3:54787188-54787207 | None:intergenic | 40.0% | |
| ! | GATATTTGGGGCATTCATGA+AGG | + | chr1_3:54787207-54787226 | None:intergenic | 40.0% |
| GTTGCCCTTTAATGTAAGCA+AGG | + | chr1_3:54787240-54787259 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_3:54787307-54787326 | None:intergenic | 40.0% | |
| ATGCAATGTAAGCAAGGGTA+GGG | + | chr1_3:54787333-54787352 | None:intergenic | 40.0% | |
| !! | TAAATATTGGGTATCGGTGC+TGG | - | chr1_3:54787358-54787377 | Msa0125940:intron | 40.0% |
| !! | TTTAGTTTGGTCCGACTAAC+TGG | - | chr1_3:54787626-54787645 | Msa0125940:intron | 40.0% |
| ! | TTAGTTTGGTCCGACTAACT+GGG | - | chr1_3:54787627-54787646 | Msa0125940:intron | 40.0% |
| CAATGCAGGTCCTTGATATT+TGG | - | chr1_3:54787699-54787718 | Msa0125940:intron | 40.0% | |
| AGAATTGCAGCCTACAGTAA+TGG | + | chr1_3:54787726-54787745 | None:intergenic | 40.0% | |
| AGGAGGTGAAAGTTGAAAGA+AGG | - | chr1_3:54787769-54787788 | Msa0125940:CDS | 40.0% | |
| ! | CAGATGCGAGGAAAAGTTTT+GGG | - | chr1_3:54787881-54787900 | Msa0125940:CDS | 40.0% |
| GTGAAGAGTGAAGACTGAAG+AGG | + | chr1_3:54783623-54783642 | None:intergenic | 45.0% | |
| CTGCGAATGCGAAACATGTT+TGG | + | chr1_3:54783666-54783685 | None:intergenic | 45.0% | |
| AAGAAGGAGGAGGGAGAATT+GGG | + | chr1_3:54783776-54783795 | None:intergenic | 45.0% | |
| AAACCTAGGAAGGAAGAAGG+AGG | + | chr1_3:54783789-54783808 | None:intergenic | 45.0% | |
| TCAAATGCATCGTCTGAGCA+AGG | - | chr1_3:54783936-54783955 | Msa0125940:three_prime_UTR | 45.0% | |
| CAAATGCATCGTCTGAGCAA+GGG | - | chr1_3:54783937-54783956 | Msa0125940:three_prime_UTR | 45.0% | |
| TTTAGCTGACCCCACTTAGT+GGG | - | chr1_3:54784528-54784547 | Msa0125940:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr1_3:54784542-54784561 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr1_3:54784539-54784558 | Msa0125940:intron | 45.0% | |
| TTTCCTATTTCCGCTTCGTG+AGG | + | chr1_3:54784795-54784814 | None:intergenic | 45.0% | |
| !!! | TCTCTACCCATGTTTTGGTG+AGG | - | chr1_3:54784826-54784845 | Msa0125940:CDS | 45.0% |
| ATGGAGCCTCACCAAAACAT+GGG | + | chr1_3:54784835-54784854 | None:intergenic | 45.0% | |
| ! | AATTTTTCGTCGCTGTCCTG+TGG | - | chr1_3:54784921-54784940 | Msa0125940:CDS | 45.0% |
| !! | ACAAATGTTACCGGCTTCTC+GGG | + | chr1_3:54785108-54785127 | None:intergenic | 45.0% |
| !! | CACAAATGTTACCGGCTTCT+CGG | + | chr1_3:54785109-54785128 | None:intergenic | 45.0% |
| AAGCCGGTAACATTTGTGGA+GGG | - | chr1_3:54785111-54785130 | Msa0125940:intron | 45.0% | |
| TGCAAGAATGACCAGACTGT+AGG | + | chr1_3:54785142-54785161 | None:intergenic | 45.0% | |
| TACAGTCTGGTCATTCTTGC+AGG | - | chr1_3:54785141-54785160 | Msa0125940:intron | 45.0% | |
| ACAGTCTGGTCATTCTTGCA+GGG | - | chr1_3:54785142-54785161 | Msa0125940:intron | 45.0% | |
| TGGGGTAAGACAAGCCAATA+AGG | + | chr1_3:54785345-54785364 | None:intergenic | 45.0% | |
| !!! | TAGACTCTGGAGTGGTTTTG+GGG | + | chr1_3:54785363-54785382 | None:intergenic | 45.0% |
| !!! | CTAGACTCTGGAGTGGTTTT+GGG | + | chr1_3:54785364-54785383 | None:intergenic | 45.0% |
| ! | AATTGAGCTAGACTCTGGAG+TGG | + | chr1_3:54785371-54785390 | None:intergenic | 45.0% |
| ATATGCAGTCAGCTCGGTAT+AGG | - | chr1_3:54785938-54785957 | Msa0125940:intron | 45.0% | |
| GTGCTATGTCATTGAGTAGG+TGG | - | chr1_3:54785960-54785979 | Msa0125940:intron | 45.0% | |
| ATTGAGTAGGTGGTTGGAGT+TGG | - | chr1_3:54785970-54785989 | Msa0125940:intron | 45.0% | |
| TTGAGTAGGTGGTTGGAGTT+GGG | - | chr1_3:54785971-54785990 | Msa0125940:intron | 45.0% | |
| GTATTGGATTTCCAGGTCAG+AGG | - | chr1_3:54786283-54786302 | Msa0125940:intron | 45.0% | |
| AGGATTGGATCCCCAATTAC+AGG | - | chr1_3:54786307-54786326 | Msa0125940:intron | 45.0% | |
| GGATCCCCAATTACAGGTTA+TGG | - | chr1_3:54786313-54786332 | Msa0125940:intron | 45.0% | |
| CCCAATTACAGGTTATGGTC+AGG | - | chr1_3:54786318-54786337 | Msa0125940:intron | 45.0% | |
| CTCGTCAAAGAATTCCCAAC+AGG | - | chr1_3:54786359-54786378 | Msa0125940:intron | 45.0% | |
| ATGTTCAACACCCTCCTCAT+CGG | + | chr1_3:54786392-54786411 | None:intergenic | 45.0% | |
| TTGAATAGACCCATCATCCC+TGG | - | chr1_3:54786481-54786500 | Msa0125940:CDS | 45.0% | |
| TGAATAGACCCATCATCCCT+GGG | - | chr1_3:54786482-54786501 | Msa0125940:CDS | 45.0% | |
| CTTCTAAACCCAGGGATGAT+GGG | + | chr1_3:54786493-54786512 | None:intergenic | 45.0% | |
| TCTTCTAAACCCAGGGATGA+TGG | + | chr1_3:54786494-54786513 | None:intergenic | 45.0% | |
| CTGAAAGGTCTTCTAAACCC+AGG | + | chr1_3:54786502-54786521 | None:intergenic | 45.0% | |
| GAAAAAGGAAAGGAGAGACG+AGG | - | chr1_3:54786544-54786563 | Msa0125940:CDS | 45.0% | |
| GAGATGTTCAAAGGAGCTGA+CGG | - | chr1_3:54786774-54786793 | Msa0125940:intron | 45.0% | |
| GACTCCAGAATTAGTTGTGC+TGG | + | chr1_3:54786846-54786865 | None:intergenic | 45.0% | |
| GAATCGAAGTCAGTCTGAAG+TGG | - | chr1_3:54787046-54787065 | Msa0125940:intron | 45.0% | |
| GCTTACATTAAAGGGCAACC+CGG | - | chr1_3:54787241-54787260 | Msa0125940:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_3:54787308-54787327 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_3:54787311-54787330 | None:intergenic | 45.0% | |
| CATGCAATGTAAGCAAGGGT+AGG | + | chr1_3:54787334-54787353 | None:intergenic | 45.0% | |
| ATTAAGAACCTGCAGATGCG+AGG | - | chr1_3:54787869-54787888 | Msa0125940:intron | 45.0% | |
| ! | AAACTTTTCCTCGCATCTGC+AGG | + | chr1_3:54787880-54787899 | None:intergenic | 45.0% |
| ! | GCAGATGCGAGGAAAAGTTT+TGG | - | chr1_3:54787880-54787899 | Msa0125940:CDS | 45.0% |
| !!! | TGCGAGGAAAAGTTTTGGGA+AGG | - | chr1_3:54787885-54787904 | Msa0125940:CDS | 45.0% |
| !! | AATTAAAGTAAAAAATAATA+TGG | - | chr1_3:54787798-54787817 | Msa0125940:intron | 5.0% |
| !! | ATTAAAGTAAAAAATAATAT+GGG | - | chr1_3:54787799-54787818 | Msa0125940:intron | 5.0% |
| !! | TTATTAAAAAAAATTCATTT+GGG | + | chr1_3:54788083-54788102 | None:intergenic | 5.0% |
| !! | ATTATTAAAAAAAATTCATT+TGG | + | chr1_3:54788084-54788103 | None:intergenic | 5.0% |
| !! | AAAACGGCGCCGGTTTCTTA+TGG | + | chr1_3:54783576-54783595 | None:intergenic | 50.0% |
| ACTTCACTTCAAAACGGCGC+CGG | + | chr1_3:54783586-54783605 | None:intergenic | 50.0% | |
| TTGGAACGAGGAAGAGAACG+TGG | + | chr1_3:54783750-54783769 | None:intergenic | 50.0% | |
| !! | AGAATTGGGGCATTGGAACG+AGG | + | chr1_3:54783762-54783781 | None:intergenic | 50.0% |
| AGAAGGAGGAGGGAGAATTG+GGG | + | chr1_3:54783775-54783794 | None:intergenic | 50.0% | |
| GAAGAAGGAGGAGGGAGAAT+TGG | + | chr1_3:54783777-54783796 | None:intergenic | 50.0% | |
| CTAGGAAGGAAGAAGGAGGA+GGG | + | chr1_3:54783785-54783804 | None:intergenic | 50.0% | |
| CACTTAACCCAAGTCACGTC+AGG | + | chr1_3:54784159-54784178 | None:intergenic | 50.0% | |
| ! | GACGTGACTTGGGTTAAGTG+TGG | - | chr1_3:54784159-54784178 | Msa0125940:intron | 50.0% |
| CTTTAGCTGACCCCACTTAG+TGG | - | chr1_3:54784527-54784546 | Msa0125940:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr1_3:54784534-54784553 | Msa0125940:intron | 50.0% | |
| CATGGAGCCTCACCAAAACA+TGG | + | chr1_3:54784836-54784855 | None:intergenic | 50.0% | |
| CGAGAAGCCGGTAACATTTG+TGG | - | chr1_3:54785107-54785126 | Msa0125940:intron | 50.0% | |
| GAAGCCGGTAACATTTGTGG+AGG | - | chr1_3:54785110-54785129 | Msa0125940:intron | 50.0% | |
| AGCCGGTAACATTTGTGGAG+GGG | - | chr1_3:54785112-54785131 | Msa0125940:intron | 50.0% | |
| !!! | GCTAGACTCTGGAGTGGTTT+TGG | + | chr1_3:54785365-54785384 | None:intergenic | 50.0% |
| AGGTGATTGGAGTTGGGTGA+TGG | - | chr1_3:54786062-54786081 | Msa0125940:intron | 50.0% | |
| TCATCGGTCCAAACCCTGTT+GGG | + | chr1_3:54786376-54786395 | None:intergenic | 50.0% | |
| AGACCTTTCAGAAAGGAGGG+AGG | - | chr1_3:54786511-54786530 | Msa0125940:CDS | 50.0% | |
| TCTCCTCCCTCCTTTCTGAA+AGG | + | chr1_3:54786517-54786536 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | + | chr1_3:54787263-54787282 | None:intergenic | 50.0% |
| ACTAAAGCTCCTGCATACGC+AGG | - | chr1_3:54787267-54787286 | Msa0125940:intron | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | - | chr1_3:54787268-54787287 | Msa0125940:intron | 50.0% | |
| TGGACCAAGTCCCAGTTAGT+CGG | + | chr1_3:54787640-54787659 | None:intergenic | 50.0% | |
| CTTCCAGTTCCTTGTTCGAC+AGG | - | chr1_3:54787749-54787768 | Msa0125940:CDS | 50.0% | |
| CTTTCACCTCCTGTCGAACA+AGG | + | chr1_3:54787761-54787780 | None:intergenic | 50.0% | |
| ACAAAGTGCATTGCGGGTGC+AGG | + | chr1_3:54783715-54783734 | None:intergenic | 55.0% | |
| AGGAGGGAGAATTGGGGCAT+TGG | + | chr1_3:54783769-54783788 | None:intergenic | 55.0% | |
| CCTAGGAAGGAAGAAGGAGG+AGG | + | chr1_3:54783786-54783805 | None:intergenic | 55.0% | |
| CCTCCTCCTTCTTCCTTCCT+AGG | - | chr1_3:54783783-54783802 | Msa0125940:three_prime_UTR | 55.0% | |
| TGCTCACACCTGACGTGACT+TGG | - | chr1_3:54784148-54784167 | Msa0125940:intron | 55.0% | |
| GCTCACACCTGACGTGACTT+GGG | - | chr1_3:54784149-54784168 | Msa0125940:intron | 55.0% | |
| AATTGGAGTTTGCGCGTGCG+CGG | - | chr1_3:54784285-54784304 | Msa0125940:intron | 55.0% | |
| GTGAGGCGTACACGCATACA+AGG | + | chr1_3:54784778-54784797 | None:intergenic | 55.0% | |
| ACGCCTCACGAAGCGGAAAT+AGG | - | chr1_3:54784789-54784808 | Msa0125940:CDS | 55.0% | |
| GCTGTCCTGTGGCCATAGAA+TGG | - | chr1_3:54784932-54784951 | Msa0125940:intron | 55.0% | |
| CACAGCCATTCTATGGCCAC+AGG | + | chr1_3:54784940-54784959 | None:intergenic | 55.0% | |
| GCCGGTAACATTTGTGGAGG+GGG | - | chr1_3:54785113-54785132 | Msa0125940:intron | 55.0% | |
| GCCCCCTCCACAAATGTTAC+CGG | + | chr1_3:54785117-54785136 | None:intergenic | 55.0% | |
| CTGGTCATTCTTGCAGGGCT+TGG | - | chr1_3:54785147-54785166 | Msa0125940:intron | 55.0% | |
| TCTTGCAGGGCTTGGAGTTG+CGG | - | chr1_3:54785155-54785174 | Msa0125940:intron | 55.0% | |
| TGGATTTCCAGGTCAGAGGG+AGG | - | chr1_3:54786287-54786306 | Msa0125940:intron | 55.0% | |
| TTCCAGGTCAGAGGGAGGAT+TGG | - | chr1_3:54786292-54786311 | Msa0125940:intron | 55.0% | |
| ATCCAATCCTCCCTCTGACC+TGG | + | chr1_3:54786297-54786316 | None:intergenic | 55.0% | |
| CTCATCGGTCCAAACCCTGT+TGG | + | chr1_3:54786377-54786396 | None:intergenic | 55.0% | |
| CAACAGGGTTTGGACCGATG+AGG | - | chr1_3:54786375-54786394 | Msa0125940:intron | 55.0% | |
| AGGGTTTGGACCGATGAGGA+GGG | - | chr1_3:54786379-54786398 | Msa0125940:intron | 55.0% | |
| !! | GGAGGGTGTTGAACATGTCG+AGG | - | chr1_3:54786396-54786415 | Msa0125940:intron | 55.0% |
| AGGAAAGGAGAGACGAGGTG+TGG | - | chr1_3:54786549-54786568 | Msa0125940:CDS | 55.0% | |
| GAGAGACGAGGTGTGGTTCT+TGG | - | chr1_3:54786556-54786575 | Msa0125940:CDS | 55.0% | |
| TCAAAGGAGCTGACGGTGAG+TGG | - | chr1_3:54786781-54786800 | Msa0125940:intron | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | + | chr1_3:54787262-54787281 | None:intergenic | 55.0% |
| TGGTCCGACTAACTGGGACT+TGG | - | chr1_3:54787633-54787652 | Msa0125940:intron | 55.0% | |
| CCTCCTGTCGAACAAGGAAC+TGG | + | chr1_3:54787755-54787774 | None:intergenic | 55.0% | |
| CCAGTTCCTTGTTCGACAGG+AGG | - | chr1_3:54787752-54787771 | Msa0125940:CDS | 55.0% | |
| GCGCACGCGCAAACTCCAAT+TGG | + | chr1_3:54784286-54784305 | None:intergenic | 60.0% | |
| ACGCACGCGCTAACCCCAAT+TGG | + | chr1_3:54784339-54784358 | None:intergenic | 60.0% | |
| TGCGTGTACGCCTCACGAAG+CGG | - | chr1_3:54784782-54784801 | Msa0125940:CDS | 60.0% | |
| CAGGGTTTGGACCGATGAGG+AGG | - | chr1_3:54786378-54786397 | Msa0125940:intron | 60.0% | |
| TTCTTTATCCGGGGCCCCCA+TGG | - | chr1_3:54786732-54786751 | Msa0125940:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_3:54787295-54787314 | None:intergenic | 60.0% |
| GGGTGCAGGATGCGAGTGCA+CGG | + | chr1_3:54783701-54783720 | None:intergenic | 65.0% | |
| CTTGGAGTTGCGGCTGCTGC+TGG | - | chr1_3:54785165-54785184 | Msa0125940:intron | 65.0% | |
| TTCCATGTCCATGGGGGCCC+CGG | + | chr1_3:54786743-54786762 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | - | chr1_3:54787273-54787292 | Msa0125940:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | - | chr1_3:54787274-54787293 | Msa0125940:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | + | chr1_3:54787279-54787298 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | - | chr1_3:54787278-54787297 | Msa0125940:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr1_3:54787279-54787298 | Msa0125940:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr1_3:54787280-54787299 | Msa0125940:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_3:54787293-54787312 | Msa0125940:intron | 65.0% | |
| !! | GGAGGGGGCGTCCTACAGTC+TGG | - | chr1_3:54785128-54785147 | Msa0125940:intron | 70.0% |
| ATCCGGGGCCCCCATGGACA+TGG | - | chr1_3:54786738-54786757 | Msa0125940:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54783551 | 54788125 | 54783551 | ID=Msa0125940;Name=Msa0125940 |
| chr1_3 | mRNA | 54783551 | 54788125 | 54783551 | ID=Msa0125940-mRNA-1;Parent=Msa0125940;Name=Msa0125940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=118|1|1|1|0.83|0.71|7|433|249 |
| chr1_3 | exon | 54783551 | 54783969 | 54783551 | ID=Msa0125940-mRNA-1:exon:16891;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54784766 | 54784950 | 54784766 | ID=Msa0125940-mRNA-1:exon:16890;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54785259 | 54785378 | 54785259 | ID=Msa0125940-mRNA-1:exon:16889;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54786132 | 54786180 | 54786132 | ID=Msa0125940-mRNA-1:exon:16888;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54786450 | 54786631 | 54786450 | ID=Msa0125940-mRNA-1:exon:16887;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54787702 | 54787793 | 54787702 | ID=Msa0125940-mRNA-1:exon:16886;Parent=Msa0125940-mRNA-1 |
| chr1_3 | exon | 54787872 | 54788125 | 54787872 | ID=Msa0125940-mRNA-1:exon:16885;Parent=Msa0125940-mRNA-1 |
| chr1_3 | five_prime_UTR | 54788008 | 54788125 | 54788008 | ID=Msa0125940-mRNA-1:five_prime_utr;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54787872 | 54788007 | 54787872 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54787702 | 54787793 | 54787702 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54786450 | 54786631 | 54786450 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54786132 | 54786180 | 54786132 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54785259 | 54785378 | 54785259 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | CDS | 54784780 | 54784950 | 54784780 | ID=Msa0125940-mRNA-1:cds;Parent=Msa0125940-mRNA-1 |
| chr1_3 | three_prime_UTR | 54784766 | 54784779 | 54784766 | ID=Msa0125940-mRNA-1:three_prime_utr;Parent=Msa0125940-mRNA-1 |
| chr1_3 | three_prime_UTR | 54783551 | 54783969 | 54783551 | ID=Msa0125940-mRNA-1:three_prime_utr;Parent=Msa0125940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
