Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078240 | XP_013468835.1 | 98.795 | 249 | 2 | 1 | 1 | 249 | 1 | 248 | 3.25e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078240 | sp|Q1G3L1|TIM21_ARATH | 70.874 | 206 | 58 | 2 | 40 | 244 | 65 | 269 | 4.68e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078240 | A0A072VM55 | 98.795 | 249 | 2 | 1 | 1 | 249 | 1 | 248 | 1.55e-178 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078240 | Msa0125940 | 0.843504 | 1.345737e-58 | -8.615850e-47 |
| Msa0078240 | Msa0170900 | 0.858031 | 1.088461e-62 | -8.615850e-47 |
| Msa0078240 | Msa0475840 | 0.803036 | 4.222108e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078240 | MtrunA17_Chr1g0188711 | 98.795 | 249 | 2 | 1 | 1 | 249 | 1 | 248 | 0.0 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078240 | AT4G00026.1 | 70.874 | 206 | 58 | 2 | 40 | 244 | 65 | 269 | 4.75e-91 | 270 |
Find 95 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACCATAACCTGTAAT+TGG | 0.168759 | 1_2:-55615421 | None:intergenic |
| TGTGAAGTACATTGAGTTTC+TGG | 0.196319 | 1_2:+55617091 | Msa0078240:three_prime_UTR |
| CAATGCAGGTCCTTGATATT+TGG | 0.239521 | 1_2:+55616780 | Msa0078240:intron |
| TCTCATCTAGACTACTTGTT+TGG | 0.252981 | 1_2:-55615987 | None:intergenic |
| TACAGTCTGGTCATTCTTGC+AGG | 0.260868 | 1_2:+55614245 | Msa0078240:CDS |
| AAAACGGCGCCGGTTTCTTA+TGG | 0.267817 | 1_2:-55612703 | None:intergenic |
| TACAGGTTAATTTCTTTATC+CGG | 0.292822 | 1_2:+55615823 | Msa0078240:intron |
| CTGGTCATTCTTGCAGGGCT+TGG | 0.297184 | 1_2:+55614251 | Msa0078240:CDS |
| TATTAAACTCTTTACTCTTT+GGG | 0.301931 | 1_2:-55614323 | None:intergenic |
| CTTGGAGTTGCGGCTGCTGC+TGG | 0.310884 | 1_2:+55614269 | Msa0078240:CDS |
| CTCATCTAGACTACTTGTTT+GGG | 0.313277 | 1_2:-55615986 | None:intergenic |
| TTCTCCAGCACAACTAATTC+TGG | 0.313380 | 1_2:+55615941 | Msa0078240:CDS |
| AAAGAATTCCCAACAGGGTT+TGG | 0.335930 | 1_2:+55615467 | Msa0078240:CDS |
| GCTGACAATTTCATATATCT+TGG | 0.340052 | 1_2:+55617066 | Msa0078240:three_prime_UTR |
| GCAGATGCGAGGAAAAGTTT+TGG | 0.341847 | 1_2:+55616961 | Msa0078240:three_prime_UTR |
| GGATCCCCAATTACAGGTTA+TGG | 0.342971 | 1_2:+55615415 | Msa0078240:CDS |
| CTGCGAATGCGAAACATGTT+TGG | 0.349492 | 1_2:-55612782 | None:intergenic |
| CACAAATGTTACCGGCTTCT+CGG | 0.372686 | 1_2:-55614210 | None:intergenic |
| CGAGAAGCCGGTAACATTTG+TGG | 0.402449 | 1_2:+55614211 | Msa0078240:CDS |
| AGGATTGGATCCCCAATTAC+AGG | 0.409135 | 1_2:+55615409 | Msa0078240:CDS |
| GTTGGAATTGCAGAAAACTA+TGG | 0.412465 | 1_2:+55613000 | Msa0078240:CDS |
| CCTGACCATAACCTGTAATT+GGG | 0.414561 | 1_2:-55615420 | None:intergenic |
| GGGAGGGAGAATTGGGGCAT+TGG | 0.416479 | 1_2:-55612885 | None:intergenic |
| CTCGTCAAAGAATTCCCAAC+AGG | 0.416592 | 1_2:+55615461 | Msa0078240:CDS |
| GAATTTGAATCTCAATTCTC+AGG | 0.419715 | 1_2:+55616902 | Msa0078240:three_prime_UTR |
| TGATGAAGAAAGTGCATTGC+GGG | 0.422235 | 1_2:-55612837 | None:intergenic |
| CCTCCTGTCGAACAAGGAAC+TGG | 0.424858 | 1_2:-55616833 | None:intergenic |
| TCATCGGTCCAAACCCTGTT+GGG | 0.437968 | 1_2:-55615475 | None:intergenic |
| ACAGGTTAATTTCTTTATCC+GGG | 0.440134 | 1_2:+55615824 | Msa0078240:intron |
| CTTCCAGTTCCTTGTTCGAC+AGG | 0.440654 | 1_2:+55616830 | Msa0078240:three_prime_UTR |
| TTCCAGGTCAGAGGGAGGAT+TGG | 0.449707 | 1_2:+55615394 | Msa0078240:intron |
| GACTCCAGAATTAGTTGTGC+TGG | 0.450239 | 1_2:-55615945 | None:intergenic |
| TACTTGTTTGGGTTGTAAGA+AGG | 0.465698 | 1_2:-55615975 | None:intergenic |
| GATATTTGGTCCATTACTGT+AGG | 0.468005 | 1_2:+55616794 | Msa0078240:three_prime_UTR |
| ACAAATGTTACCGGCTTCTC+GGG | 0.475865 | 1_2:-55614209 | None:intergenic |
| AAGAATTCAAGATGATGGTC+AGG | 0.477460 | 1_2:+55614627 | Msa0078240:CDS |
| CCCAATTACAGGTTATGGTC+AGG | 0.479884 | 1_2:+55615420 | Msa0078240:CDS |
| CTCATCGGTCCAAACCCTGT+TGG | 0.484272 | 1_2:-55615476 | None:intergenic |
| CTCAAAAGAATTCAAGATGA+TGG | 0.488801 | 1_2:+55614622 | Msa0078240:CDS |
| ACTTGTTTGGGTTGTAAGAA+GGG | 0.491275 | 1_2:-55615974 | None:intergenic |
| ATATAATATTCCCGAGAAGC+CGG | 0.498429 | 1_2:+55614199 | Msa0078240:CDS |
| AAAGGATAACCATAAGAAAC+CGG | 0.509469 | 1_2:+55612694 | Msa0078240:five_prime_UTR |
| CCAGTTCCTTGTTCGACAGG+AGG | 0.511242 | 1_2:+55616833 | Msa0078240:three_prime_UTR |
| GCCGGTAACATTTGTGGAGG+GGG | 0.515141 | 1_2:+55614217 | Msa0078240:CDS |
| AGACATAAACCTTGTCAAAG+AGG | 0.517648 | 1_2:-55613028 | None:intergenic |
| TCTTGCAGGGCTTGGAGTTG+CGG | 0.534096 | 1_2:+55614259 | Msa0078240:CDS |
| ACAGTCTGGTCATTCTTGCA+GGG | 0.534491 | 1_2:+55614246 | Msa0078240:CDS |
| GCAAACACTTCACTTCAAAA+CGG | 0.534538 | 1_2:-55612719 | None:intergenic |
| ACAAACCTAGGAAGGAAGAA+GGG | 0.538082 | 1_2:-55612907 | None:intergenic |
| CATTGGATTTCCAGGTCAGA+GGG | 0.538576 | 1_2:+55615386 | Msa0078240:intron |
| AGAATTGCAGCCTACAGTAA+TGG | 0.539766 | 1_2:-55616804 | None:intergenic |
| TCAAAGGAGCTGACGGTGAG+TGG | 0.548735 | 1_2:+55615883 | Msa0078240:CDS |
| CTTTCACCTCCTGTCGAACA+AGG | 0.558425 | 1_2:-55616839 | None:intergenic |
| AAGGATTTAGAAGCAAGTAA+AGG | 0.559872 | 1_2:+55612676 | None:intergenic |
| TCAAATGCATCGTCTGAGCA+AGG | 0.560458 | 1_2:+55613051 | Msa0078240:CDS |
| CAAACCTAGGAAGGAAGAAG+GGG | 0.564178 | 1_2:-55612906 | None:intergenic |
| AGAATTAGTTGTGCTGGAGA+AGG | 0.564476 | 1_2:-55615939 | None:intergenic |
| AGGAGGTGAAAGTTGAAAGA+AGG | 0.567784 | 1_2:+55616850 | Msa0078240:three_prime_UTR |
| ACAAGTAGTCTAGATGAGAA+AGG | 0.572207 | 1_2:+55615991 | Msa0078240:exon |
| AACAAACCTAGGAAGGAAGA+AGG | 0.573093 | 1_2:-55612908 | None:intergenic |
| GAATTGGGGCATTGGAACGA+GGG | 0.576096 | 1_2:-55612877 | None:intergenic |
| CAGGGTTTGGACCGATGAGG+AGG | 0.578696 | 1_2:+55615480 | Msa0078240:CDS |
| CAGTAATGGACCAAATATCA+AGG | 0.579927 | 1_2:-55616790 | None:intergenic |
| AGAATTGGGGCATTGGAACG+AGG | 0.584201 | 1_2:-55612878 | None:intergenic |
| GCATTGGATTTCCAGGTCAG+AGG | 0.586325 | 1_2:+55615385 | Msa0078240:intron |
| CAAATGCATCGTCTGAGCAA+GGG | 0.589240 | 1_2:+55613052 | Msa0078240:CDS |
| ATGTTCAACACCCTCCTCAT+CGG | 0.592436 | 1_2:-55615491 | None:intergenic |
| AGCCGGTAACATTTGTGGAG+GGG | 0.592583 | 1_2:+55614216 | Msa0078240:CDS |
| CAGGTTAATTTCTTTATCCG+GGG | 0.595507 | 1_2:+55615825 | Msa0078240:intron |
| GCACGATGCGAGTGCACGGT+AGG | 0.605736 | 1_2:-55612813 | None:intergenic |
| GGCGAAGTGAAGACTGAAGA+GGG | 0.606726 | 1_2:-55612745 | None:intergenic |
| AAGCCGGTAACATTTGTGGA+GGG | 0.611693 | 1_2:+55614215 | Msa0078240:CDS |
| ACTTCACTTCAAAACGGCGC+CGG | 0.611997 | 1_2:-55612713 | None:intergenic |
| TTCTCGGGAATATTATATGT+CGG | 0.612683 | 1_2:-55614194 | None:intergenic |
| AAGTACATTGAGTTTCTGGA+AGG | 0.616481 | 1_2:+55617095 | Msa0078240:three_prime_UTR |
| ATTAAGAACCTGCAGATGCG+AGG | 0.625890 | 1_2:+55616950 | Msa0078240:three_prime_UTR |
| GTATTCGCTGAGATGTTCAA+AGG | 0.627485 | 1_2:+55615867 | Msa0078240:CDS |
| TATGTCGGAGCATCATCGAA+TGG | 0.630475 | 1_2:-55614179 | None:intergenic |
| CGGCGAAGTGAAGACTGAAG+AGG | 0.630777 | 1_2:-55612746 | None:intergenic |
| CTGACCATAACCTGTAATTG+GGG | 0.635184 | 1_2:-55615419 | None:intergenic |
| GAGATGTTCAAAGGAGCTGA+CGG | 0.637033 | 1_2:+55615876 | Msa0078240:CDS |
| TGGATTTCCAGGTCAGAGGG+AGG | 0.640034 | 1_2:+55615389 | Msa0078240:intron |
| ATGGATCAACCTCTTTGACA+AGG | 0.641918 | 1_2:+55613019 | Msa0078240:CDS |
| GGGTGCACGATGCGAGTGCA+CGG | 0.642303 | 1_2:-55612817 | None:intergenic |
| GAAGCCGGTAACATTTGTGG+AGG | 0.643600 | 1_2:+55614214 | Msa0078240:CDS |
| TAACAATAAATTAGAATACA+CGG | 0.653144 | 1_2:-55617041 | None:intergenic |
| AGGGTTTGGACCGATGAGGA+GGG | 0.654864 | 1_2:+55615481 | Msa0078240:CDS |
| CAACAGGGTTTGGACCGATG+AGG | 0.658274 | 1_2:+55615477 | Msa0078240:CDS |
| GGAGGGTGTTGAACATGTCG+AGG | 0.659911 | 1_2:+55615498 | Msa0078240:CDS |
| TCGTCAAAGAATTCCCAACA+GGG | 0.663020 | 1_2:+55615462 | Msa0078240:CDS |
| TTGGAACGAGGGAGAGAACG+TGG | 0.664134 | 1_2:-55612866 | None:intergenic |
| AAACCTAGGAAGGAAGAAGG+GGG | 0.664648 | 1_2:-55612905 | None:intergenic |
| TAGGTACAAGATTTATAACA+AGG | 0.670702 | 1_2:+55614597 | Msa0078240:intron |
| TGCAAGAATGACCAGACTGT+AGG | 0.695526 | 1_2:-55614243 | None:intergenic |
| ATGATGAAGAAAGTGCATTG+CGG | 0.712599 | 1_2:-55612838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATGTTTTTTTTTCT+AGG | + | chr1_2:55612976-55612995 | Msa0078240:intron | 10.0% |
| !!! | TCATTTATTGATTTTAATTA+AGG | + | chr1_2:55613149-55613168 | Msa0078240:intron | 10.0% |
| !!! | AAATTTTTAAATCTTCTTTA+TGG | + | chr1_2:55615729-55615748 | Msa0078240:intron | 10.0% |
| !! | CATTATTAAAAAAATTCATT+TGG | - | chr1_2:55617165-55617184 | None:intergenic | 10.0% |
| !! | TTAATTAAGGAATAATGTTT+AGG | + | chr1_2:55613162-55613181 | Msa0078240:intron | 15.0% |
| !!! | TTTTTTTGCTTAAATAATGA+AGG | + | chr1_2:55613570-55613589 | Msa0078240:intron | 15.0% |
| !! | TATTATCAAAATTCAAACAT+AGG | - | chr1_2:55614896-55614915 | None:intergenic | 15.0% |
| !!! | ATGTTTGAATTTTGATAATA+AGG | + | chr1_2:55614896-55614915 | Msa0078240:intron | 15.0% |
| !!! | TATATTATCATTTTTCATTG+AGG | - | chr1_2:55614963-55614982 | None:intergenic | 15.0% |
| !! | ATATATAATATAAAATCACC+AGG | + | chr1_2:55614978-55614997 | Msa0078240:intron | 15.0% |
| !!! | GTAAATTGTATGTTAATTTT+TGG | + | chr1_2:55615313-55615332 | Msa0078240:intron | 15.0% |
| !!! | ACATTATTTGTATTATTTCT+CGG | + | chr1_2:55615700-55615719 | Msa0078240:intron | 15.0% |
| !!! | ATGAAATGATATAGTATTTT+AGG | + | chr1_2:55616264-55616283 | Msa0078240:intron | 15.0% |
| !! | ATTGCATGTTTATAAATATT+GGG | + | chr1_2:55616448-55616467 | Msa0078240:intron | 15.0% |
| !! | TATTTATAAAGAATATGAAC+TGG | - | chr1_2:55616740-55616759 | None:intergenic | 15.0% |
| !! | TAACAATAAATTAGAATACA+CGG | - | chr1_2:55617044-55617063 | None:intergenic | 15.0% |
| !! | AACTTCATTAAAAATTATGG+TGG | - | chr1_2:55613331-55613350 | None:intergenic | 20.0% |
| !!! | ACCATAATTTTTAATGAAGT+TGG | + | chr1_2:55613330-55613349 | Msa0078240:intron | 20.0% |
| !! | ACCAACTTCATTAAAAATTA+TGG | - | chr1_2:55613334-55613353 | None:intergenic | 20.0% |
| !!! | CATATTTTCTAGTATTGATT+GGG | - | chr1_2:55614008-55614027 | None:intergenic | 20.0% |
| !!! | TCATATTTTCTAGTATTGAT+TGG | - | chr1_2:55614009-55614028 | None:intergenic | 20.0% |
| !! | AAAAGAGTTAAAAAATGTTG+AGG | + | chr1_2:55614154-55614173 | Msa0078240:CDS | 20.0% |
| !! | TATTAAACTCTTTACTCTTT+GGG | - | chr1_2:55614326-55614345 | None:intergenic | 20.0% |
| !! | ATATTAAACTCTTTACTCTT+TGG | - | chr1_2:55614327-55614346 | None:intergenic | 20.0% |
| !!! | AATATTTAAGTTCCTCTAAA+TGG | - | chr1_2:55614711-55614730 | None:intergenic | 20.0% |
| !! | TATACAAAGACAACTAAAAT+TGG | + | chr1_2:55614822-55614841 | Msa0078240:intron | 20.0% |
| !! | ATACAAAGACAACTAAAATT+GGG | + | chr1_2:55614823-55614842 | Msa0078240:intron | 20.0% |
| !!! | TTTTTAAATCTTCTTTATGG+TGG | + | chr1_2:55615732-55615751 | Msa0078240:intron | 20.0% |
| !!! | TTTTAAATCTTCTTTATGGT+GGG | + | chr1_2:55615733-55615752 | Msa0078240:intron | 20.0% |
| !! | CTTGTTTCATCAAAATAAAT+GGG | - | chr1_2:55616031-55616050 | None:intergenic | 20.0% |
| !! | ACTTGTTTCATCAAAATAAA+TGG | - | chr1_2:55616032-55616051 | None:intergenic | 20.0% |
| !!! | ATGAAACAAGTTTTTTTGAA+GGG | + | chr1_2:55616041-55616060 | Msa0078240:intron | 20.0% |
| !! | CATTGCATGTTTATAAATAT+TGG | + | chr1_2:55616447-55616466 | Msa0078240:intron | 20.0% |
| !! | TGTTTATAAATATTGGGTAT+CGG | + | chr1_2:55616454-55616473 | Msa0078240:intron | 20.0% |
| !!! | AACAGTTAAACACAATTTTT+CGG | - | chr1_2:55616549-55616568 | None:intergenic | 20.0% |
| ! | TAAAGTGAAGTGAAATTGAA+GGG | - | chr1_2:55612940-55612959 | None:intergenic | 25.0% |
| ! | ATAAAGTGAAGTGAAATTGA+AGG | - | chr1_2:55612941-55612960 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTTTCTAGGTGT+TGG | + | chr1_2:55612982-55613001 | Msa0078240:intron | 25.0% |
| ! | AATGAGTAATGCATTCATTA+GGG | - | chr1_2:55613134-55613153 | None:intergenic | 25.0% |
| ! | AAATGAGTAATGCATTCATT+AGG | - | chr1_2:55613135-55613154 | None:intergenic | 25.0% |
| !! | AAGGAATAATGTTTAGGTTT+AGG | + | chr1_2:55613168-55613187 | Msa0078240:intron | 25.0% |
| !!! | TGTGGAATTTTAAAGTTGTT+AGG | + | chr1_2:55613292-55613311 | Msa0078240:intron | 25.0% |
| ! | AAAACACTCTAATTACCAAT+TGG | + | chr1_2:55613384-55613403 | Msa0078240:intron | 25.0% |
| !!! | GGAGTAGTTTTTTTTTTAGA+GGG | + | chr1_2:55613598-55613617 | Msa0078240:intron | 25.0% |
| ! | AGTAAAGAGTTTAATATCCT+TGG | + | chr1_2:55614330-55614349 | Msa0078240:intron | 25.0% |
| ! | TCAGATAAATAATATGACCA+AGG | - | chr1_2:55614350-55614369 | None:intergenic | 25.0% |
| !!! | CTTATTGATTGTTGAGTTTT+GGG | + | chr1_2:55614418-55614437 | Msa0078240:intron | 25.0% |
| ! | AACCATCAGAACAAAATAAA+TGG | - | chr1_2:55614565-55614584 | None:intergenic | 25.0% |
| ! | TAGGTACAAGATTTATAACA+AGG | + | chr1_2:55614597-55614616 | Msa0078240:intron | 25.0% |
| !!! | TTATTTTGGTTTTCTGATTC+AGG | - | chr1_2:55614681-55614700 | None:intergenic | 25.0% |
| !!! | TAAATGGAGATGCTTTATTT+TGG | - | chr1_2:55614695-55614714 | None:intergenic | 25.0% |
| !!! | CATTGTTTTATTTAGTGCTT+TGG | - | chr1_2:55615289-55615308 | None:intergenic | 25.0% |
| !! | TGCAGAAACATACATATTTT+AGG | + | chr1_2:55615551-55615570 | Msa0078240:intron | 25.0% |
| ! | AGATAACTATGAAAAAGGAA+AGG | + | chr1_2:55615636-55615655 | Msa0078240:intron | 25.0% |
| ! | TACAGGTTAATTTCTTTATC+CGG | + | chr1_2:55615823-55615842 | Msa0078240:intron | 25.0% |
| !!! | GATGAAACAAGTTTTTTTGA+AGG | + | chr1_2:55616040-55616059 | Msa0078240:intron | 25.0% |
| ! | ATGTGGAACATAAGATAATT+TGG | - | chr1_2:55616204-55616223 | None:intergenic | 25.0% |
| ! | GTTCCACATATTTAATTAAG+TGG | + | chr1_2:55616215-55616234 | Msa0078240:intron | 25.0% |
| ! | TCACCACTTAATTAAATATG+TGG | - | chr1_2:55616221-55616240 | None:intergenic | 25.0% |
| ! | GAAAAATTGTGTTTAACTGT+TGG | + | chr1_2:55616548-55616567 | Msa0078240:intron | 25.0% |
| ! | TGGACCAAACTAAAATAAAT+GGG | - | chr1_2:55616699-55616718 | None:intergenic | 25.0% |
| AAAGGATAACCATAAGAAAC+CGG | + | chr1_2:55612694-55612713 | Msa0078240:five_prime_UTR | 30.0% | |
| !!! | TGTTTGGTTTTGATTCTATG+CGG | - | chr1_2:55612769-55612788 | None:intergenic | 30.0% |
| TAAACACTCTAGTTACCAAT+TGG | + | chr1_2:55613437-55613456 | Msa0078240:intron | 30.0% | |
| AAACACTCTAGTTACCAATT+GGG | + | chr1_2:55613438-55613457 | Msa0078240:intron | 30.0% | |
| CATGTATGTATGTGTGTAAT+AGG | + | chr1_2:55613488-55613507 | Msa0078240:intron | 30.0% | |
| ACTTAGCACGAATTATAGTT+CGG | - | chr1_2:55613537-55613556 | None:intergenic | 30.0% | |
| TTTGCTTAAATAATGAAGGC+TGG | + | chr1_2:55613574-55613593 | Msa0078240:intron | 30.0% | |
| TTGCTTAAATAATGAAGGCT+GGG | + | chr1_2:55613575-55613594 | Msa0078240:intron | 30.0% | |
| !!! | GGGAGTAGTTTTTTTTTTAG+AGG | + | chr1_2:55613597-55613616 | Msa0078240:intron | 30.0% |
| ATGTAGAAATGTTAGTAGCA+AGG | + | chr1_2:55613697-55613716 | Msa0078240:intron | 30.0% | |
| TCATACGAAGTTATCACATA+TGG | + | chr1_2:55613745-55613764 | Msa0078240:intron | 30.0% | |
| ATTTGCATCCAAGTCATAAA+TGG | - | chr1_2:55613788-55613807 | None:intergenic | 30.0% | |
| TCACAATGAAATTCACGTAT+AGG | - | chr1_2:55613832-55613851 | None:intergenic | 30.0% | |
| ! | TTGGCATTGTCATTTCTTAA+AGG | + | chr1_2:55613977-55613996 | Msa0078240:intron | 30.0% |
| ! | GTTTTACACGGCATTTTATT+TGG | + | chr1_2:55614066-55614085 | Msa0078240:intron | 30.0% |
| TTCTCGGGAATATTATATGT+CGG | - | chr1_2:55614197-55614216 | None:intergenic | 30.0% | |
| TCTGAAAGAAAAATGCTACA+TGG | + | chr1_2:55614365-55614384 | Msa0078240:intron | 30.0% | |
| AACTCAACAATCAATAAGCA+TGG | - | chr1_2:55614416-55614435 | None:intergenic | 30.0% | |
| !! | GCTTATTGATTGTTGAGTTT+TGG | + | chr1_2:55614417-55614436 | Msa0078240:intron | 30.0% |
| !!! | TGCCATTTATTTTGTTCTGA+TGG | + | chr1_2:55614560-55614579 | Msa0078240:intron | 30.0% |
| CTCAAAAGAATTCAAGATGA+TGG | + | chr1_2:55614622-55614641 | Msa0078240:CDS | 30.0% | |
| ! | AATAAAGCATCTCCATTTAG+AGG | + | chr1_2:55614696-55614715 | Msa0078240:intron | 30.0% |
| GTATATCTTCTTCCTACAAA+TGG | - | chr1_2:55614807-55614826 | None:intergenic | 30.0% | |
| ACTAAAATTGGGTGATGAAA+TGG | + | chr1_2:55614834-55614853 | Msa0078240:intron | 30.0% | |
| !!! | TGCTACTTTTACACTGATAA+CGG | - | chr1_2:55614936-55614955 | None:intergenic | 30.0% |
| TTTACTACTACTGGATCAAT+AGG | - | chr1_2:55615011-55615030 | None:intergenic | 30.0% | |
| ! | AAGTGATCTTTTACTACTAC+TGG | - | chr1_2:55615020-55615039 | None:intergenic | 30.0% |
| CCTCTTTCATTTATTGTTCA+GGG | - | chr1_2:55615225-55615244 | None:intergenic | 30.0% | |
| TCCTCTTTCATTTATTGTTC+AGG | - | chr1_2:55615226-55615245 | None:intergenic | 30.0% | |
| !!! | GCAATTTTTTGGTAGAACAA+AGG | - | chr1_2:55615261-55615280 | None:intergenic | 30.0% |
| TGCTCTCAAATATGTTCATT+TGG | + | chr1_2:55615798-55615817 | Msa0078240:intron | 30.0% | |
| GCTCTCAAATATGTTCATTT+GGG | + | chr1_2:55615799-55615818 | Msa0078240:intron | 30.0% | |
| ! | AATATGTTCATTTGGGTTAC+AGG | + | chr1_2:55615806-55615825 | Msa0078240:intron | 30.0% |
| ACAGGTTAATTTCTTTATCC+GGG | + | chr1_2:55615824-55615843 | Msa0078240:intron | 30.0% | |
| !! | CATCAAAATAAATGGGCTAT+TGG | - | chr1_2:55616024-55616043 | None:intergenic | 30.0% |
| AGGGATTAAGTGAGATATTT+GGG | - | chr1_2:55616322-55616341 | None:intergenic | 30.0% | |
| AAGGGATTAAGTGAGATATT+TGG | - | chr1_2:55616323-55616342 | None:intergenic | 30.0% | |
| TAATCCCTTGCTTACATTAA+AGG | + | chr1_2:55616334-55616353 | Msa0078240:intron | 30.0% | |
| AATCCCTTGCTTACATTAAA+GGG | + | chr1_2:55616335-55616354 | Msa0078240:intron | 30.0% | |
| TAAACATGCAATGTAAGCAA+GGG | - | chr1_2:55616440-55616459 | None:intergenic | 30.0% | |
| ATAAACATGCAATGTAAGCA+AGG | - | chr1_2:55616441-55616460 | None:intergenic | 30.0% | |
| ! | GTCCATTTTATCTTGCATTT+TGG | + | chr1_2:55616482-55616501 | Msa0078240:intron | 30.0% |
| !!! | GTTTCTGCGTATCAATTTTT+TGG | + | chr1_2:55616666-55616685 | Msa0078240:intron | 30.0% |
| !!! | CTCTCCCATTTATTTTAGTT+TGG | + | chr1_2:55616692-55616711 | Msa0078240:intron | 30.0% |
| CTGGACCAAACTAAAATAAA+TGG | - | chr1_2:55616700-55616719 | None:intergenic | 30.0% | |
| GAATTTGAATCTCAATTCTC+AGG | + | chr1_2:55616902-55616921 | Msa0078240:three_prime_UTR | 30.0% | |
| GCTGACAATTTCATATATCT+TGG | + | chr1_2:55617066-55617085 | Msa0078240:three_prime_UTR | 30.0% | |
| !!! | AAGGAGTATGCTATTTTGTT+AGG | + | chr1_2:55617114-55617133 | Msa0078240:three_prime_UTR | 30.0% |
| GCAAACACTTCACTTCAAAA+CGG | - | chr1_2:55612722-55612741 | None:intergenic | 35.0% | |
| ! | ATGATGAAGAAAGTGCATTG+CGG | - | chr1_2:55612841-55612860 | None:intergenic | 35.0% |
| ! | GAAGTGAAATTGAAGGGTTT+TGG | - | chr1_2:55612934-55612953 | None:intergenic | 35.0% |
| GTTGGAATTGCAGAAAACTA+TGG | + | chr1_2:55613000-55613019 | Msa0078240:CDS | 35.0% | |
| AGACATAAACCTTGTCAAAG+AGG | - | chr1_2:55613031-55613050 | None:intergenic | 35.0% | |
| AAACAGTATTAGCGTGAAAG+TGG | - | chr1_2:55613096-55613115 | None:intergenic | 35.0% | |
| CTAAGTGTGTTTGACACAAA+TGG | + | chr1_2:55613230-55613249 | Msa0078240:intron | 35.0% | |
| AACACTCTAGTTACCAATTG+GGG | + | chr1_2:55613439-55613458 | Msa0078240:intron | 35.0% | |
| TGCTTAAATAATGAAGGCTG+GGG | + | chr1_2:55613576-55613595 | Msa0078240:intron | 35.0% | |
| TGTGATAACTTCGTATGAGT+TGG | - | chr1_2:55613743-55613762 | None:intergenic | 35.0% | |
| TCATAAATGGTGTAAGCGTA+AGG | - | chr1_2:55613775-55613794 | None:intergenic | 35.0% | |
| CAAATCGAAAATTTCCCACT+TGG | + | chr1_2:55613803-55613822 | Msa0078240:intron | 35.0% | |
| ! | TCTATTCTCTACCCATGTTT+TGG | + | chr1_2:55613928-55613947 | Msa0078240:intron | 35.0% |
| CCAAAAACACTATTGTAGCA+TGG | - | chr1_2:55613961-55613980 | None:intergenic | 35.0% | |
| ! | CCATGCTACAATAGTGTTTT+TGG | + | chr1_2:55613958-55613977 | Msa0078240:intron | 35.0% |
| TGTAAAACACAGCCATTCTA+TGG | - | chr1_2:55614054-55614073 | None:intergenic | 35.0% | |
| ! | TAGAATGGCTGTGTTTTACA+CGG | + | chr1_2:55614054-55614073 | Msa0078240:intron | 35.0% |
| ATATAATATTCCCGAGAAGC+CGG | + | chr1_2:55614199-55614218 | Msa0078240:CDS | 35.0% | |
| ! | TGCTGGATATTCTGTTTTCA+AGG | + | chr1_2:55614286-55614305 | Msa0078240:CDS | 35.0% |
| !!! | ATTGATTGTTGAGTTTTGGG+TGG | + | chr1_2:55614421-55614440 | Msa0078240:intron | 35.0% |
| GATGGTTATAAGCTGATGAT+AGG | + | chr1_2:55614578-55614597 | Msa0078240:intron | 35.0% | |
| ! | AAGAATTCAAGATGATGGTC+AGG | + | chr1_2:55614627-55614646 | Msa0078240:CDS | 35.0% |
| CAACACAAACTGAAGGATAT+TGG | - | chr1_2:55614747-55614766 | None:intergenic | 35.0% | |
| CAATATCCTTCAGTTTGTGT+TGG | + | chr1_2:55614745-55614764 | Msa0078240:intron | 35.0% | |
| GTTGGATATGAAATGAAGCT+GGG | + | chr1_2:55614767-55614786 | Msa0078240:intron | 35.0% | |
| TTGAAAGGATCTTTAACGAC+TGG | - | chr1_2:55615108-55615127 | None:intergenic | 35.0% | |
| CTAGCTTACTGCATATTGAA+AGG | - | chr1_2:55615123-55615142 | None:intergenic | 35.0% | |
| CTTTCAATATGCAGTAAGCT+AGG | + | chr1_2:55615121-55615140 | Msa0078240:intron | 35.0% | |
| ATATGCAGTAAGCTAGGTAT+AGG | + | chr1_2:55615127-55615146 | Msa0078240:intron | 35.0% | |
| TATGTCATTGAGTAGGTGAT+TGG | + | chr1_2:55615153-55615172 | Msa0078240:intron | 35.0% | |
| CCCTGAACAATAAATGAAAG+AGG | + | chr1_2:55615222-55615241 | Msa0078240:intron | 35.0% | |
| TGTCTTGATGTGAAATGCAT+TGG | + | chr1_2:55615369-55615388 | Msa0078240:intron | 35.0% | |
| GTTTAGAAGACCTTTCAGAA+AGG | + | chr1_2:55615606-55615625 | Msa0078240:intron | 35.0% | |
| GGAGGAGATAACTATGAAAA+AGG | + | chr1_2:55615631-55615650 | Msa0078240:intron | 35.0% | |
| CAGGTTAATTTCTTTATCCG+GGG | + | chr1_2:55615825-55615844 | Msa0078240:intron | 35.0% | |
| ! | AATACTTTTCCATGTCCATG+GGG | - | chr1_2:55615852-55615871 | None:intergenic | 35.0% |
| ! | GAATACTTTTCCATGTCCAT+GGG | - | chr1_2:55615853-55615872 | None:intergenic | 35.0% |
| !! | ACTTGTTTGGGTTGTAAGAA+GGG | - | chr1_2:55615977-55615996 | None:intergenic | 35.0% |
| !! | TACTTGTTTGGGTTGTAAGA+AGG | - | chr1_2:55615978-55615997 | None:intergenic | 35.0% |
| CTCATCTAGACTACTTGTTT+GGG | - | chr1_2:55615989-55616008 | None:intergenic | 35.0% | |
| TCTCATCTAGACTACTTGTT+TGG | - | chr1_2:55615990-55616009 | None:intergenic | 35.0% | |
| ACAAGTAGTCTAGATGAGAA+AGG | + | chr1_2:55615991-55616010 | Msa0078240:exon | 35.0% | |
| GGGATTAAGTGAGATATTTG+GGG | - | chr1_2:55616321-55616340 | None:intergenic | 35.0% | |
| TTGCCCTTTAATGTAAGCAA+GGG | - | chr1_2:55616341-55616360 | None:intergenic | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr1_2:55616409-55616428 | None:intergenic | 35.0% | |
| GGCCAAAATGCAAGATAAAA+TGG | - | chr1_2:55616487-55616506 | None:intergenic | 35.0% | |
| GACATGAACAAGATGATACT+CGG | - | chr1_2:55616508-55616527 | None:intergenic | 35.0% | |
| !! | TTTTCGGACTAGATTATGCA+AGG | - | chr1_2:55616533-55616552 | None:intergenic | 35.0% |
| CTAATCTCATTACTCAATGC+AGG | + | chr1_2:55616766-55616785 | Msa0078240:intron | 35.0% | |
| !! | CAGTAATGGACCAAATATCA+AGG | - | chr1_2:55616793-55616812 | None:intergenic | 35.0% |
| GATATTTGGTCCATTACTGT+AGG | + | chr1_2:55616794-55616813 | Msa0078240:three_prime_UTR | 35.0% | |
| TGTGAAGTACATTGAGTTTC+TGG | + | chr1_2:55617091-55617110 | Msa0078240:three_prime_UTR | 35.0% | |
| ! | AAGTACATTGAGTTTCTGGA+AGG | + | chr1_2:55617095-55617114 | Msa0078240:three_prime_UTR | 35.0% |
| ! | TGATGAAGAAAGTGCATTGC+GGG | - | chr1_2:55612840-55612859 | None:intergenic | 40.0% |
| ACAAACCTAGGAAGGAAGAA+GGG | - | chr1_2:55612910-55612929 | None:intergenic | 40.0% | |
| AACAAACCTAGGAAGGAAGA+AGG | - | chr1_2:55612911-55612930 | None:intergenic | 40.0% | |
| !!! | GTTTTGGAACAAACCTAGGA+AGG | - | chr1_2:55612918-55612937 | None:intergenic | 40.0% |
| !!! | AAGGGTTTTGGAACAAACCT+AGG | - | chr1_2:55612922-55612941 | None:intergenic | 40.0% |
| ATGGATCAACCTCTTTGACA+AGG | + | chr1_2:55613019-55613038 | Msa0078240:CDS | 40.0% | |
| GCAAGGGAAAAACACTGAAA+AGG | + | chr1_2:55613068-55613087 | Msa0078240:CDS | 40.0% | |
| GCTTAAATAATGAAGGCTGG+GGG | + | chr1_2:55613577-55613596 | Msa0078240:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | - | chr1_2:55613653-55613672 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | - | chr1_2:55613654-55613673 | None:intergenic | 40.0% | |
| ! | ATGAGTTGGCAAGATGTCTA+TGG | - | chr1_2:55613729-55613748 | None:intergenic | 40.0% |
| CGCTTACACCATTTATGACT+TGG | + | chr1_2:55613777-55613796 | Msa0078240:intron | 40.0% | |
| TCACGTATAGGTTACCAAGT+GGG | - | chr1_2:55613820-55613839 | None:intergenic | 40.0% | |
| TTCACGTATAGGTTACCAAG+TGG | - | chr1_2:55613821-55613840 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGGTGGATCCTTAT+TGG | + | chr1_2:55614432-55614451 | Msa0078240:intron | 40.0% |
| ATCAGAATTGAGCTAGACTC+TGG | - | chr1_2:55614480-55614499 | None:intergenic | 40.0% | |
| ! | ATCCTTCAGTTTGTGTTGGT+TGG | + | chr1_2:55614749-55614768 | Msa0078240:intron | 40.0% |
| ATCCAACCAACACAAACTGA+AGG | - | chr1_2:55614754-55614773 | None:intergenic | 40.0% | |
| GGTTGGATATGAAATGAAGC+TGG | + | chr1_2:55614766-55614785 | Msa0078240:intron | 40.0% | |
| TTCTGCAGATCACCATTTGT+AGG | + | chr1_2:55614792-55614811 | Msa0078240:intron | 40.0% | |
| GGATCAATAGGAAGAAATCC+TGG | - | chr1_2:55614999-55615018 | None:intergenic | 40.0% | |
| ACTTCAATATGCAGTCAGCT+CGG | + | chr1_2:55615036-55615055 | Msa0078240:intron | 40.0% | |
| ! | TAGGTGCTATGTCATTGAGT+AGG | + | chr1_2:55615061-55615080 | Msa0078240:intron | 40.0% |
| TATGTCATTGAGTAGGTGGT+TGG | + | chr1_2:55615068-55615087 | Msa0078240:intron | 40.0% | |
| TAGGCGTTATGTCATTGAGT+AGG | + | chr1_2:55615146-55615165 | Msa0078240:intron | 40.0% | |
| ATTGAGTAGGTGATTGGAGT+TGG | + | chr1_2:55615159-55615178 | Msa0078240:intron | 40.0% | |
| TTGAGTAGGTGATTGGAGTT+GGG | + | chr1_2:55615160-55615179 | Msa0078240:intron | 40.0% | |
| !!! | CTTTGGTGCGTGCAATTTTT+TGG | - | chr1_2:55615272-55615291 | None:intergenic | 40.0% |
| GTGAAATGCATTGGATTTCC+AGG | + | chr1_2:55615378-55615397 | Msa0078240:intron | 40.0% | |
| CTGACCATAACCTGTAATTG+GGG | - | chr1_2:55615422-55615441 | None:intergenic | 40.0% | |
| CCTGACCATAACCTGTAATT+GGG | - | chr1_2:55615423-55615442 | None:intergenic | 40.0% | |
| TCCTGACCATAACCTGTAAT+TGG | - | chr1_2:55615424-55615443 | None:intergenic | 40.0% | |
| TCGTCAAAGAATTCCCAACA+GGG | + | chr1_2:55615462-55615481 | Msa0078240:CDS | 40.0% | |
| AAAGAATTCCCAACAGGGTT+TGG | + | chr1_2:55615467-55615486 | Msa0078240:CDS | 40.0% | |
| TGAAAGGTCTTCTAAACCCA+GGG | - | chr1_2:55615603-55615622 | None:intergenic | 40.0% | |
| TAGAAGACCTTTCAGAAAGG+AGG | + | chr1_2:55615609-55615628 | Msa0078240:intron | 40.0% | |
| AGAAGACCTTTCAGAAAGGA+GGG | + | chr1_2:55615610-55615629 | Msa0078240:intron | 40.0% | |
| TGGTTCTTGGAGAGCTTAAT+TGG | + | chr1_2:55615671-55615690 | Msa0078240:intron | 40.0% | |
| TACTTGATGTTTAGCAGCTG+TGG | + | chr1_2:55615759-55615778 | Msa0078240:intron | 40.0% | |
| ! | ATACTTTTCCATGTCCATGG+GGG | - | chr1_2:55615851-55615870 | None:intergenic | 40.0% |
| ! | CGAATACTTTTCCATGTCCA+TGG | - | chr1_2:55615854-55615873 | None:intergenic | 40.0% |
| GTATTCGCTGAGATGTTCAA+AGG | + | chr1_2:55615867-55615886 | Msa0078240:CDS | 40.0% | |
| AGAATTAGTTGTGCTGGAGA+AGG | - | chr1_2:55615942-55615961 | None:intergenic | 40.0% | |
| TTCTCCAGCACAACTAATTC+TGG | + | chr1_2:55615941-55615960 | Msa0078240:CDS | 40.0% | |
| !! | AGTATTTTAGGCCTTGCACT+TGG | + | chr1_2:55616276-55616295 | Msa0078240:intron | 40.0% |
| AAGGAAAAGAACCAAGTGCA+AGG | - | chr1_2:55616290-55616309 | None:intergenic | 40.0% | |
| ! | GATATTTGGGGCATTCATGA+AGG | - | chr1_2:55616309-55616328 | None:intergenic | 40.0% |
| GTTGCCCTTTAATGTAAGCA+AGG | - | chr1_2:55616342-55616361 | None:intergenic | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr1_2:55616410-55616429 | None:intergenic | 40.0% | |
| GCTGCATACAATACACCAAA+TGG | - | chr1_2:55616413-55616432 | None:intergenic | 40.0% | |
| ATGCAATGTAAGCAAGGGTA+AGG | - | chr1_2:55616435-55616454 | None:intergenic | 40.0% | |
| !! | TAAATATTGGGTATCGGTGC+TGG | + | chr1_2:55616460-55616479 | Msa0078240:intron | 40.0% |
| CAATGCAGGTCCTTGATATT+TGG | + | chr1_2:55616780-55616799 | Msa0078240:intron | 40.0% | |
| AGAATTGCAGCCTACAGTAA+TGG | - | chr1_2:55616807-55616826 | None:intergenic | 40.0% | |
| AGGAGGTGAAAGTTGAAAGA+AGG | + | chr1_2:55616850-55616869 | Msa0078240:three_prime_UTR | 40.0% | |
| ! | CAGATGCGAGGAAAAGTTTT+GGG | + | chr1_2:55616962-55616981 | Msa0078240:three_prime_UTR | 40.0% |
| CTGCGAATGCGAAACATGTT+TGG | - | chr1_2:55612785-55612804 | None:intergenic | 45.0% | |
| AAACCTAGGAAGGAAGAAGG+GGG | - | chr1_2:55612908-55612927 | None:intergenic | 45.0% | |
| CAAACCTAGGAAGGAAGAAG+GGG | - | chr1_2:55612909-55612928 | None:intergenic | 45.0% | |
| TCAAATGCATCGTCTGAGCA+AGG | + | chr1_2:55613051-55613070 | Msa0078240:CDS | 45.0% | |
| CAAATGCATCGTCTGAGCAA+GGG | + | chr1_2:55613052-55613071 | Msa0078240:CDS | 45.0% | |
| TTTAGCTGACCCCACTTAGT+GGG | + | chr1_2:55613641-55613660 | Msa0078240:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | - | chr1_2:55613655-55613674 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | + | chr1_2:55613652-55613671 | Msa0078240:intron | 45.0% | |
| TTTCCTATTTCCGCTTCGTG+AGG | - | chr1_2:55613902-55613921 | None:intergenic | 45.0% | |
| !!! | TCTCTACCCATGTTTTGGTG+AGG | + | chr1_2:55613933-55613952 | Msa0078240:intron | 45.0% |
| ATGGAGCCTCACCAAAACAT+GGG | - | chr1_2:55613942-55613961 | None:intergenic | 45.0% | |
| ! | AATTTTTCGTCGCTGTCCTG+TGG | + | chr1_2:55614028-55614047 | Msa0078240:intron | 45.0% |
| ! | TATGTCGGAGCATCATCGAA+TGG | - | chr1_2:55614182-55614201 | None:intergenic | 45.0% |
| !! | ACAAATGTTACCGGCTTCTC+GGG | - | chr1_2:55614212-55614231 | None:intergenic | 45.0% |
| !! | CACAAATGTTACCGGCTTCT+CGG | - | chr1_2:55614213-55614232 | None:intergenic | 45.0% |
| AAGCCGGTAACATTTGTGGA+GGG | + | chr1_2:55614215-55614234 | Msa0078240:CDS | 45.0% | |
| TGCAAGAATGACCAGACTGT+AGG | - | chr1_2:55614246-55614265 | None:intergenic | 45.0% | |
| TACAGTCTGGTCATTCTTGC+AGG | + | chr1_2:55614245-55614264 | Msa0078240:CDS | 45.0% | |
| ACAGTCTGGTCATTCTTGCA+GGG | + | chr1_2:55614246-55614265 | Msa0078240:CDS | 45.0% | |
| TGGGGTAAGACAAGCCAATA+AGG | - | chr1_2:55614449-55614468 | None:intergenic | 45.0% | |
| !!! | TAGACTCTGGAGTGGTTTTG+GGG | - | chr1_2:55614467-55614486 | None:intergenic | 45.0% |
| !!! | CTAGACTCTGGAGTGGTTTT+GGG | - | chr1_2:55614468-55614487 | None:intergenic | 45.0% |
| ! | AATTGAGCTAGACTCTGGAG+TGG | - | chr1_2:55614475-55614494 | None:intergenic | 45.0% |
| ATATGCAGTCAGCTCGGTAT+AGG | + | chr1_2:55615042-55615061 | Msa0078240:intron | 45.0% | |
| GTGCTATGTCATTGAGTAGG+TGG | + | chr1_2:55615064-55615083 | Msa0078240:intron | 45.0% | |
| ATTGAGTAGGTGGTTGGAGT+TGG | + | chr1_2:55615074-55615093 | Msa0078240:intron | 45.0% | |
| TTGAGTAGGTGGTTGGAGTT+GGG | + | chr1_2:55615075-55615094 | Msa0078240:intron | 45.0% | |
| CATTGGATTTCCAGGTCAGA+GGG | + | chr1_2:55615386-55615405 | Msa0078240:intron | 45.0% | |
| AGGATTGGATCCCCAATTAC+AGG | + | chr1_2:55615409-55615428 | Msa0078240:CDS | 45.0% | |
| GGATCCCCAATTACAGGTTA+TGG | + | chr1_2:55615415-55615434 | Msa0078240:CDS | 45.0% | |
| CCCAATTACAGGTTATGGTC+AGG | + | chr1_2:55615420-55615439 | Msa0078240:CDS | 45.0% | |
| CTCGTCAAAGAATTCCCAAC+AGG | + | chr1_2:55615461-55615480 | Msa0078240:CDS | 45.0% | |
| ATGTTCAACACCCTCCTCAT+CGG | - | chr1_2:55615494-55615513 | None:intergenic | 45.0% | |
| TTGAATAGACCCATCATCCC+TGG | + | chr1_2:55615583-55615602 | Msa0078240:intron | 45.0% | |
| TGAATAGACCCATCATCCCT+GGG | + | chr1_2:55615584-55615603 | Msa0078240:intron | 45.0% | |
| CTTCTAAACCCAGGGATGAT+GGG | - | chr1_2:55615595-55615614 | None:intergenic | 45.0% | |
| TCTTCTAAACCCAGGGATGA+TGG | - | chr1_2:55615596-55615615 | None:intergenic | 45.0% | |
| CTGAAAGGTCTTCTAAACCC+AGG | - | chr1_2:55615604-55615623 | None:intergenic | 45.0% | |
| GAAAAAGGAAAGGAGAGACG+AGG | + | chr1_2:55615646-55615665 | Msa0078240:intron | 45.0% | |
| GAGATGTTCAAAGGAGCTGA+CGG | + | chr1_2:55615876-55615895 | Msa0078240:CDS | 45.0% | |
| GACTCCAGAATTAGTTGTGC+TGG | - | chr1_2:55615948-55615967 | None:intergenic | 45.0% | |
| GAATCGAAGTCAGTCTGAAG+TGG | + | chr1_2:55616148-55616167 | Msa0078240:intron | 45.0% | |
| GCTTACATTAAAGGGCAACC+CGG | + | chr1_2:55616343-55616362 | Msa0078240:intron | 45.0% | |
| ACTAAAGCTCCTGCATACGT+AGG | + | chr1_2:55616369-55616388 | Msa0078240:intron | 45.0% | |
| CTAAAGCTCCTGCATACGTA+GGG | + | chr1_2:55616370-55616389 | Msa0078240:intron | 45.0% | |
| ! | TTAGTTTGGTCCAGACTAGC+TGG | + | chr1_2:55616706-55616725 | Msa0078240:intron | 45.0% |
| ! | TAGTTTGGTCCAGACTAGCT+GGG | + | chr1_2:55616707-55616726 | Msa0078240:intron | 45.0% |
| ATTAAGAACCTGCAGATGCG+AGG | + | chr1_2:55616950-55616969 | Msa0078240:three_prime_UTR | 45.0% | |
| ! | AAACTTTTCCTCGCATCTGC+AGG | - | chr1_2:55616961-55616980 | None:intergenic | 45.0% |
| ! | GCAGATGCGAGGAAAAGTTT+TGG | + | chr1_2:55616961-55616980 | Msa0078240:three_prime_UTR | 45.0% |
| !!! | TGCGAGGAAAAGTTTTGGGA+AGG | + | chr1_2:55616966-55616985 | Msa0078240:three_prime_UTR | 45.0% |
| !! | AATTAAAGTAAAAAATAATA+TGG | + | chr1_2:55616879-55616898 | Msa0078240:three_prime_UTR | 5.0% |
| !! | ATTAAAGTAAAAAATAATAT+GGG | + | chr1_2:55616880-55616899 | Msa0078240:three_prime_UTR | 5.0% |
| !! | ATTATTAAAAAAATTCATTT+GGG | - | chr1_2:55617164-55617183 | None:intergenic | 5.0% |
| !! | AAAACGGCGCCGGTTTCTTA+TGG | - | chr1_2:55612706-55612725 | None:intergenic | 50.0% |
| ACTTCACTTCAAAACGGCGC+CGG | - | chr1_2:55612716-55612735 | None:intergenic | 50.0% | |
| GGCGAAGTGAAGACTGAAGA+GGG | - | chr1_2:55612748-55612767 | None:intergenic | 50.0% | |
| !! | GAATTGGGGCATTGGAACGA+GGG | - | chr1_2:55612880-55612899 | None:intergenic | 50.0% |
| !! | AGAATTGGGGCATTGGAACG+AGG | - | chr1_2:55612881-55612900 | None:intergenic | 50.0% |
| AAGAAGGGGGAGGGAGAATT+GGG | - | chr1_2:55612895-55612914 | None:intergenic | 50.0% | |
| CACTTAACCCAAGTCACGTC+AGG | - | chr1_2:55613274-55613293 | None:intergenic | 50.0% | |
| ! | GACGTGACTTGGGTTAAGTG+TGG | + | chr1_2:55613274-55613293 | Msa0078240:intron | 50.0% |
| CTTTAGCTGACCCCACTTAG+TGG | + | chr1_2:55613640-55613659 | Msa0078240:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | + | chr1_2:55613647-55613666 | Msa0078240:intron | 50.0% | |
| CATGGAGCCTCACCAAAACA+TGG | - | chr1_2:55613943-55613962 | None:intergenic | 50.0% | |
| CGAGAAGCCGGTAACATTTG+TGG | + | chr1_2:55614211-55614230 | Msa0078240:CDS | 50.0% | |
| GAAGCCGGTAACATTTGTGG+AGG | + | chr1_2:55614214-55614233 | Msa0078240:CDS | 50.0% | |
| AGCCGGTAACATTTGTGGAG+GGG | + | chr1_2:55614216-55614235 | Msa0078240:CDS | 50.0% | |
| !!! | GCTAGACTCTGGAGTGGTTT+TGG | - | chr1_2:55614469-55614488 | None:intergenic | 50.0% |
| AGGTGATTGGAGTTGGGTGA+TGG | + | chr1_2:55615166-55615185 | Msa0078240:intron | 50.0% | |
| GCATTGGATTTCCAGGTCAG+AGG | + | chr1_2:55615385-55615404 | Msa0078240:intron | 50.0% | |
| TCATCGGTCCAAACCCTGTT+GGG | - | chr1_2:55615478-55615497 | None:intergenic | 50.0% | |
| AGACCTTTCAGAAAGGAGGG+AGG | + | chr1_2:55615613-55615632 | Msa0078240:intron | 50.0% | |
| TCTCCTCCCTCCTTTCTGAA+AGG | - | chr1_2:55615619-55615638 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr1_2:55616365-55616384 | None:intergenic | 50.0% |
| CTTCCAGTTCCTTGTTCGAC+AGG | + | chr1_2:55616830-55616849 | Msa0078240:three_prime_UTR | 50.0% | |
| CTTTCACCTCCTGTCGAACA+AGG | - | chr1_2:55616842-55616861 | None:intergenic | 50.0% | |
| CGGCGAAGTGAAGACTGAAG+AGG | - | chr1_2:55612749-55612768 | None:intergenic | 55.0% | |
| TTGGAACGAGGGAGAGAACG+TGG | - | chr1_2:55612869-55612888 | None:intergenic | 55.0% | |
| AGAAGGGGGAGGGAGAATTG+GGG | - | chr1_2:55612894-55612913 | None:intergenic | 55.0% | |
| GAAGAAGGGGGAGGGAGAAT+TGG | - | chr1_2:55612896-55612915 | None:intergenic | 55.0% | |
| CTAGGAAGGAAGAAGGGGGA+GGG | - | chr1_2:55612904-55612923 | None:intergenic | 55.0% | |
| TGCTCACACCTGACGTGACT+TGG | + | chr1_2:55613263-55613282 | Msa0078240:intron | 55.0% | |
| GCTCACACCTGACGTGACTT+GGG | + | chr1_2:55613264-55613283 | Msa0078240:intron | 55.0% | |
| AATTGGAGTTTGCGCGTGCG+CGG | + | chr1_2:55613401-55613420 | Msa0078240:intron | 55.0% | |
| ACGCACGTGCTAACCCCAAT+TGG | - | chr1_2:55613455-55613474 | None:intergenic | 55.0% | |
| GTGAGGCGTACACGCATACA+AGG | - | chr1_2:55613885-55613904 | None:intergenic | 55.0% | |
| ACGCCTCACGAAGCGGAAAT+AGG | + | chr1_2:55613896-55613915 | Msa0078240:intron | 55.0% | |
| GCTGTCCTGTGGCCATAGAA+TGG | + | chr1_2:55614039-55614058 | Msa0078240:intron | 55.0% | |
| CACAGCCATTCTATGGCCAC+AGG | - | chr1_2:55614047-55614066 | None:intergenic | 55.0% | |
| GCCGGTAACATTTGTGGAGG+GGG | + | chr1_2:55614217-55614236 | Msa0078240:CDS | 55.0% | |
| GCCCCCTCCACAAATGTTAC+CGG | - | chr1_2:55614221-55614240 | None:intergenic | 55.0% | |
| CTGGTCATTCTTGCAGGGCT+TGG | + | chr1_2:55614251-55614270 | Msa0078240:CDS | 55.0% | |
| TCTTGCAGGGCTTGGAGTTG+CGG | + | chr1_2:55614259-55614278 | Msa0078240:CDS | 55.0% | |
| TGGATTTCCAGGTCAGAGGG+AGG | + | chr1_2:55615389-55615408 | Msa0078240:intron | 55.0% | |
| TTCCAGGTCAGAGGGAGGAT+TGG | + | chr1_2:55615394-55615413 | Msa0078240:intron | 55.0% | |
| ATCCAATCCTCCCTCTGACC+TGG | - | chr1_2:55615399-55615418 | None:intergenic | 55.0% | |
| CTCATCGGTCCAAACCCTGT+TGG | - | chr1_2:55615479-55615498 | None:intergenic | 55.0% | |
| CAACAGGGTTTGGACCGATG+AGG | + | chr1_2:55615477-55615496 | Msa0078240:CDS | 55.0% | |
| AGGGTTTGGACCGATGAGGA+GGG | + | chr1_2:55615481-55615500 | Msa0078240:CDS | 55.0% | |
| !! | GGAGGGTGTTGAACATGTCG+AGG | + | chr1_2:55615498-55615517 | Msa0078240:CDS | 55.0% |
| AGGAAAGGAGAGACGAGGTG+TGG | + | chr1_2:55615651-55615670 | Msa0078240:intron | 55.0% | |
| GAGAGACGAGGTGTGGTTCT+TGG | + | chr1_2:55615658-55615677 | Msa0078240:intron | 55.0% | |
| TCAAAGGAGCTGACGGTGAG+TGG | + | chr1_2:55615883-55615902 | Msa0078240:CDS | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr1_2:55616364-55616383 | None:intergenic | 55.0% |
| CCTCCTGTCGAACAAGGAAC+TGG | - | chr1_2:55616836-55616855 | None:intergenic | 55.0% | |
| CCAGTTCCTTGTTCGACAGG+AGG | + | chr1_2:55616833-55616852 | Msa0078240:three_prime_UTR | 55.0% | |
| GGGAGGGAGAATTGGGGCAT+TGG | - | chr1_2:55612888-55612907 | None:intergenic | 60.0% | |
| CCTAGGAAGGAAGAAGGGGG+AGG | - | chr1_2:55612905-55612924 | None:intergenic | 60.0% | |
| CCTCCCCCTTCTTCCTTCCT+AGG | + | chr1_2:55612902-55612921 | Msa0078240:CDS | 60.0% | |
| GCGCACGCGCAAACTCCAAT+TGG | - | chr1_2:55613402-55613421 | None:intergenic | 60.0% | |
| TGCGTGTACGCCTCACGAAG+CGG | + | chr1_2:55613889-55613908 | Msa0078240:intron | 60.0% | |
| CAGGGTTTGGACCGATGAGG+AGG | + | chr1_2:55615480-55615499 | Msa0078240:CDS | 60.0% | |
| TTCTTTATCCGGGGCCCCCA+TGG | + | chr1_2:55615834-55615853 | Msa0078240:CDS | 60.0% | |
| GCTCCTGCATACGTAGGGTC+CGG | + | chr1_2:55616375-55616394 | Msa0078240:intron | 60.0% | |
| CTCCTGCATACGTAGGGTCC+GGG | + | chr1_2:55616376-55616395 | Msa0078240:intron | 60.0% | |
| TTCCCGGACCCTACGTATGC+AGG | - | chr1_2:55616381-55616400 | None:intergenic | 60.0% | |
| TGCATACGTAGGGTCCGGGA+AGG | + | chr1_2:55616380-55616399 | Msa0078240:intron | 60.0% | |
| GCATACGTAGGGTCCGGGAA+GGG | + | chr1_2:55616381-55616400 | Msa0078240:intron | 60.0% | |
| CATACGTAGGGTCCGGGAAG+GGG | + | chr1_2:55616382-55616401 | Msa0078240:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_2:55616397-55616416 | None:intergenic | 60.0% |
| ! | GGTCCAGACTAGCTGGGACT+TGG | + | chr1_2:55616713-55616732 | Msa0078240:intron | 60.0% |
| GGACCAAGTCCCAGCTAGTC+TGG | - | chr1_2:55616719-55616738 | None:intergenic | 60.0% | |
| GCACGATGCGAGTGCACGGT+AGG | - | chr1_2:55612816-55612835 | None:intergenic | 65.0% | |
| GGGTGCACGATGCGAGTGCA+CGG | - | chr1_2:55612820-55612839 | None:intergenic | 65.0% | |
| CTTGGAGTTGCGGCTGCTGC+TGG | + | chr1_2:55614269-55614288 | Msa0078240:CDS | 65.0% | |
| TTCCATGTCCATGGGGGCCC+CGG | - | chr1_2:55615845-55615864 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_2:55616395-55616414 | Msa0078240:intron | 65.0% | |
| !! | GGAGGGGGCGTCCTACAGTC+TGG | + | chr1_2:55614232-55614251 | Msa0078240:CDS | 70.0% |
| ATCCGGGGCCCCCATGGACA+TGG | + | chr1_2:55615840-55615859 | Msa0078240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55612681 | 55617205 | 55612681 | ID=Msa0078240;Name=Msa0078240 |
| chr1_2 | mRNA | 55612681 | 55617205 | 55612681 | ID=Msa0078240-mRNA-1;Parent=Msa0078240;Name=Msa0078240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=107|1|1|1|0.83|0.71|7|432|249 |
| chr1_2 | exon | 55612681 | 55612923 | 55612681 | ID=Msa0078240-mRNA-1:exon:17329;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55612998 | 55613089 | 55612998 | ID=Msa0078240-mRNA-1:exon:17330;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55614149 | 55614330 | 55614149 | ID=Msa0078240-mRNA-1:exon:17331;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55614600 | 55614648 | 55614600 | ID=Msa0078240-mRNA-1:exon:17332;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55615400 | 55615519 | 55615400 | ID=Msa0078240-mRNA-1:exon:17333;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55615828 | 55616012 | 55615828 | ID=Msa0078240-mRNA-1:exon:17334;Parent=Msa0078240-mRNA-1 |
| chr1_2 | exon | 55616788 | 55617205 | 55616788 | ID=Msa0078240-mRNA-1:exon:17335;Parent=Msa0078240-mRNA-1 |
| chr1_2 | five_prime_UTR | 55612681 | 55612787 | 55612681 | ID=Msa0078240-mRNA-1:five_prime_utr;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55612788 | 55612923 | 55612788 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55612998 | 55613089 | 55612998 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55614149 | 55614330 | 55614149 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55614600 | 55614648 | 55614600 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55615400 | 55615519 | 55615400 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | CDS | 55615828 | 55615998 | 55615828 | ID=Msa0078240-mRNA-1:cds;Parent=Msa0078240-mRNA-1 |
| chr1_2 | three_prime_UTR | 55615999 | 55616012 | 55615999 | ID=Msa0078240-mRNA-1:three_prime_utr;Parent=Msa0078240-mRNA-1 |
| chr1_2 | three_prime_UTR | 55616788 | 55617205 | 55616788 | ID=Msa0078240-mRNA-1:three_prime_utr;Parent=Msa0078240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
