Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126270 | sp|Q9M8Y0|SEC_ARATH | 74.653 | 288 | 68 | 2 | 21 | 303 | 7 | 294 | 6.26e-148 | 442 |
| Msa0126270 | sp|Q9M8Y0|SEC_ARATH | 32.627 | 236 | 159 | 0 | 68 | 303 | 229 | 464 | 4.92e-33 | 132 |
| Msa0126270 | sp|Q9M8Y0|SEC_ARATH | 32.195 | 205 | 105 | 1 | 102 | 272 | 297 | 501 | 4.22e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126270 | G7I5N5 | 29.756 | 205 | 110 | 1 | 102 | 272 | 306 | 510 | 8.18e-20 | 100 |
| Msa0126270 | G7I5N5 | 32.203 | 236 | 160 | 0 | 68 | 303 | 238 | 473 | 3.51e-29 | 128 |
| Msa0126270 | G7I5N5 | 40.110 | 182 | 109 | 0 | 121 | 302 | 189 | 370 | 2.11e-34 | 143 |
| Msa0126270 | G7I5N5 | 99.670 | 303 | 1 | 0 | 1 | 303 | 1 | 303 | 0.0 | 631 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126270 | Msa0827490 | 0.822109 | 2.823713e-53 | -8.615850e-47 |
| Msa0126270 | Msa1026100 | 0.802068 | 6.686920e-49 | -8.615850e-47 |
| Msa0126270 | Msa1064860 | 0.800654 | 1.302006e-48 | -8.615850e-47 |
| Msa0126270 | Msa1279490 | 0.829990 | 3.778603e-55 | -8.615850e-47 |
| Msa0126270 | Msa1404220 | 0.856237 | 3.685555e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126270 | MtrunA17_Chr1g0189861 | 99.537 | 216 | 1 | 0 | 1 | 216 | 1 | 216 | 2.68e-162 | 451 |
| Msa0126270 | MtrunA17_Chr1g0189861 | 39.583 | 96 | 58 | 0 | 189 | 284 | 121 | 216 | 2.15e-15 | 73.9 |
| Msa0126270 | MtrunA17_Chr1g0189861 | 41.333 | 75 | 44 | 0 | 223 | 297 | 121 | 195 | 6.37e-12 | 64.3 |
| Msa0126270 | MtrunA17_Chr1g0189851 | 100.000 | 61 | 0 | 0 | 243 | 303 | 1 | 61 | 3.09e-34 | 132 |
| Msa0126270 | MtrunA17_Chr1g0189851 | 32.174 | 230 | 156 | 0 | 74 | 303 | 2 | 231 | 1.38e-32 | 127 |
| Msa0126270 | MtrunA17_Chr1g0189851 | 40.625 | 128 | 76 | 0 | 175 | 302 | 1 | 128 | 8.21e-25 | 104 |
| Msa0126270 | MtrunA17_Chr1g0189851 | 29.756 | 205 | 110 | 1 | 102 | 272 | 64 | 268 | 1.44e-23 | 100 |
| Msa0126270 | MtrunA17_Chr1g0178301 | 31.414 | 191 | 124 | 1 | 116 | 299 | 175 | 365 | 5.42e-21 | 93.2 |
| Msa0126270 | MtrunA17_Chr1g0178301 | 32.099 | 162 | 103 | 1 | 148 | 302 | 98 | 259 | 1.41e-19 | 89.4 |
| Msa0126270 | MtrunA17_Chr1g0178301 | 29.448 | 163 | 113 | 1 | 97 | 257 | 299 | 461 | 4.43e-19 | 87.8 |
| Msa0126270 | MtrunA17_Chr1g0178301 | 26.471 | 238 | 134 | 1 | 102 | 298 | 195 | 432 | 7.07e-19 | 87.0 |
| Msa0126270 | MtrunA17_Chr1g0178301 | 31.677 | 161 | 110 | 0 | 111 | 271 | 279 | 439 | 2.00e-17 | 82.8 |
| Msa0126270 | MtrunA17_Chr1g0168581 | 26.070 | 257 | 176 | 3 | 50 | 294 | 218 | 472 | 1.11e-11 | 65.5 |
| Msa0126270 | MtrunA17_Chr1g0168581 | 24.645 | 211 | 151 | 1 | 97 | 299 | 233 | 443 | 7.53e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126270 | AT3G04240.1 | 74.653 | 288 | 68 | 2 | 21 | 303 | 7 | 294 | 6.37e-149 | 442 |
| Msa0126270 | AT3G04240.1 | 32.627 | 236 | 159 | 0 | 68 | 303 | 229 | 464 | 5.00e-34 | 132 |
| Msa0126270 | AT3G04240.1 | 32.195 | 205 | 105 | 1 | 102 | 272 | 297 | 501 | 4.29e-26 | 108 |
| Msa0126270 | AT3G04240.2 | 32.609 | 230 | 155 | 0 | 74 | 303 | 2 | 231 | 7.81e-34 | 131 |
| Msa0126270 | AT3G04240.2 | 85.246 | 61 | 9 | 0 | 243 | 303 | 1 | 61 | 1.64e-27 | 112 |
| Msa0126270 | AT3G04240.2 | 32.195 | 205 | 105 | 1 | 102 | 272 | 64 | 268 | 3.16e-26 | 108 |
| Msa0126270 | AT3G04240.2 | 39.844 | 128 | 77 | 0 | 175 | 302 | 1 | 128 | 3.31e-23 | 100 |
| Msa0126270 | AT3G11540.1 | 31.959 | 194 | 125 | 1 | 116 | 302 | 172 | 365 | 1.49e-20 | 92.4 |
| Msa0126270 | AT3G11540.1 | 28.205 | 234 | 155 | 3 | 78 | 298 | 196 | 429 | 5.38e-20 | 90.9 |
| Msa0126270 | AT3G11540.1 | 33.908 | 174 | 96 | 3 | 141 | 302 | 90 | 256 | 2.90e-18 | 85.5 |
| Msa0126270 | AT3G11540.1 | 28.492 | 179 | 117 | 2 | 130 | 297 | 148 | 326 | 8.90e-15 | 75.1 |
| Msa0126270 | AT1G05150.1 | 25.118 | 211 | 150 | 1 | 97 | 299 | 235 | 445 | 2.98e-12 | 67.4 |
| Msa0126270 | AT1G05150.1 | 25.877 | 228 | 166 | 2 | 70 | 294 | 247 | 474 | 5.72e-11 | 63.5 |
| Msa0126270 | AT3G11540.2 | 31.395 | 172 | 90 | 5 | 141 | 298 | 90 | 247 | 1.40e-11 | 65.5 |
| Msa0126270 | AT2G32450.1 | 24.645 | 211 | 151 | 1 | 97 | 299 | 230 | 440 | 2.45e-11 | 64.7 |
| Msa0126270 | AT2G32450.1 | 25.207 | 242 | 169 | 2 | 63 | 294 | 230 | 469 | 7.30e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCATGCATCAGCAAAAT+TGG | 0.177023 | 1_3:+55230337 | None:intergenic |
| TTTCTTCTTCTCTACGATTT+TGG | 0.215641 | 1_3:+55231991 | None:intergenic |
| CCAAACTATGGCATGGCTTA+TGG | 0.303947 | 1_3:-55228586 | None:intergenic |
| TGCCGAGTGTTACGGTAATA+TGG | 0.304813 | 1_3:-55231057 | Msa0126270:CDS |
| AATAGTAAAATTACCATTAG+AGG | 0.332566 | 1_3:+55230236 | None:intergenic |
| AAAGGGAACATGAAAGGAAT+TGG | 0.355152 | 1_3:+55231904 | None:intergenic |
| ATCTTGGTTCGGAAGAGATC+TGG | 0.358333 | 1_3:+55232108 | None:intergenic |
| CTTCAGACACGGCCAAACTA+TGG | 0.368387 | 1_3:-55228598 | Msa0126270:CDS |
| CCTGATGCATACTTGAACCT+TGG | 0.368615 | 1_3:-55228779 | Msa0126270:CDS |
| ACTTGCTATCAACCCTCTAA+TGG | 0.389345 | 1_3:-55230249 | Msa0126270:intron |
| AAATCTTGCTGGTCTGTTCA+TGG | 0.391501 | 1_3:-55229208 | Msa0126270:CDS |
| CCATAAGCCATGCCATAGTT+TGG | 0.399981 | 1_3:+55228586 | None:intergenic |
| CCAAGGTTCAAGTATGCATC+AGG | 0.403218 | 1_3:+55228779 | None:intergenic |
| GCTGGTCTGTTCATGGAGTC+TGG | 0.413134 | 1_3:-55229201 | Msa0126270:CDS |
| CTATTACTTGATTGCCATTG+AGG | 0.423798 | 1_3:-55230877 | Msa0126270:intron |
| ATTGCATGGTCAAATCTTGC+TGG | 0.431271 | 1_3:-55229219 | Msa0126270:CDS |
| CTGGACGGAGATCATGATTC+CGG | 0.431969 | 1_3:+55231828 | None:intergenic |
| TTGGCTCATCCGACAGCTCT+CGG | 0.434068 | 1_3:-55231762 | Msa0126270:CDS |
| TTATAGGGAGATGAGAATCT+TGG | 0.438587 | 1_3:+55232092 | None:intergenic |
| CCTTGGTGCAATTTATTACC+AGG | 0.442505 | 1_3:-55231258 | Msa0126270:intron |
| GACCATGCATCAGCAAAATT+GGG | 0.445415 | 1_3:+55230338 | None:intergenic |
| CTGATGCATACTTGAACCTT+GGG | 0.451840 | 1_3:-55228778 | Msa0126270:CDS |
| AACCACCACTCTCAGCTTGT+TGG | 0.452650 | 1_3:-55231781 | Msa0126270:CDS |
| GAACGGTTCAACGCGATCTC+CGG | 0.452834 | 1_3:+55231729 | None:intergenic |
| ACCAAGGAGTAGTAAATTAT+CGG | 0.453046 | 1_3:+55231274 | None:intergenic |
| CGCGCTCATGATTCTAGTGA+AGG | 0.464261 | 1_3:-55231664 | Msa0126270:intron |
| CGGAATCATGATCTCCGTCC+AGG | 0.468061 | 1_3:-55231827 | Msa0126270:exon |
| CGACGACGGCTCTTGCTTAA+CGG | 0.473736 | 1_3:+55231705 | None:intergenic |
| CCACACTTTGCCGAGTGTTA+CGG | 0.474939 | 1_3:-55231065 | Msa0126270:CDS |
| GTGAATCAGTGAACGAAGAA+AGG | 0.476380 | 1_3:+55231886 | None:intergenic |
| AGCTCTCGGTTGCCGTTCAC+CGG | 0.478100 | 1_3:-55231748 | Msa0126270:CDS |
| ACCGATAATTTACTACTCCT+TGG | 0.486401 | 1_3:-55231275 | Msa0126270:CDS |
| GGTTGATGCTCATAGTAACT+TGG | 0.496415 | 1_3:-55230062 | Msa0126270:CDS |
| CCTTCTCCGTCTCTGTTCAC+CGG | 0.498189 | 1_3:-55231847 | Msa0126270:five_prime_UTR |
| GGCTCTTGCTTAACGGCGAA+CGG | 0.508387 | 1_3:+55231712 | None:intergenic |
| AACATGAAAGGAATTGGATC+GGG | 0.510090 | 1_3:+55231910 | None:intergenic |
| GGCAGACCTTGTAATACTGC+AGG | 0.511471 | 1_3:+55229163 | None:intergenic |
| GGTAATCTAATGAAAGCTCA+AGG | 0.514812 | 1_3:-55230040 | Msa0126270:CDS |
| ATCAAGAATACATACCTCAA+TGG | 0.523924 | 1_3:+55230863 | None:intergenic |
| ACGGAGAAGGAACGAAGGAT+CGG | 0.525168 | 1_3:+55231860 | None:intergenic |
| GGCAATAACGTGAGCGACGA+CGG | 0.526386 | 1_3:+55231691 | None:intergenic |
| TCTTGGTTCGGAAGAGATCT+GGG | 0.527496 | 1_3:+55232109 | None:intergenic |
| GGGAGATGAGAATCTTGGTT+CGG | 0.529630 | 1_3:+55232097 | None:intergenic |
| GAGATCTGGGCCGTCGATGT+AGG | 0.529801 | 1_3:+55232122 | None:intergenic |
| AACCTACCTTTGCTATTGCA+TGG | 0.530684 | 1_3:-55229233 | Msa0126270:CDS |
| CAGAGCCCTGCAGTATTACA+AGG | 0.533229 | 1_3:-55229169 | Msa0126270:intron |
| TGAATCAGTGAACGAAGAAA+GGG | 0.534195 | 1_3:+55231887 | None:intergenic |
| CTTTATCTTTCCTACATCGA+CGG | 0.541818 | 1_3:-55232132 | Msa0126270:five_prime_UTR |
| AAGAAAACGCGAACTCGAGA+AGG | 0.542439 | 1_3:+55232059 | None:intergenic |
| CTAGAATCATGAGCGCGTAA+AGG | 0.548037 | 1_3:+55231670 | None:intergenic |
| GAAAGGAATTGGATCGGGAG+AGG | 0.548057 | 1_3:+55231915 | None:intergenic |
| ATAGTAAAATTACCATTAGA+GGG | 0.557033 | 1_3:+55230237 | None:intergenic |
| GGTGAAGTTTCTGTTAAGAT+CGG | 0.564002 | 1_3:+55232029 | None:intergenic |
| TGCCATATTACCGTAACACT+CGG | 0.568106 | 1_3:+55231055 | None:intergenic |
| ACGAAGAAAGGGAACATGAA+AGG | 0.571085 | 1_3:+55231898 | None:intergenic |
| GGTGGTTGTAGTGGTGGCGA+TGG | 0.580159 | 1_3:+55231797 | None:intergenic |
| GTTGATGCTCATAGTAACTT+GGG | 0.583189 | 1_3:-55230061 | Msa0126270:CDS |
| AAGTATGCATCAGGGAAGGA+AGG | 0.583668 | 1_3:+55228788 | None:intergenic |
| GAACATGAAAGGAATTGGAT+CGG | 0.586223 | 1_3:+55231909 | None:intergenic |
| GAACCTTGGGAATGTATACA+AGG | 0.587196 | 1_3:-55228765 | Msa0126270:intron |
| TACGCATGTATGCACTAGCT+AGG | 0.587484 | 1_3:+55230312 | None:intergenic |
| GCTAGTGCATACATGCGTAA+AGG | 0.588429 | 1_3:-55230308 | Msa0126270:CDS |
| GGTGGCGATGGTGATCTCCC+TGG | 0.590906 | 1_3:+55231809 | None:intergenic |
| ATGATTCCGGTGAACAGAGA+CGG | 0.591963 | 1_3:+55231841 | None:intergenic |
| ATCAACATGCTCTTCAGACA+CGG | 0.597820 | 1_3:-55228609 | Msa0126270:CDS |
| GCTGAGAGTGGTGGTTGTAG+TGG | 0.599298 | 1_3:+55231788 | None:intergenic |
| TAATATGGCAAATGCATGGA+AGG | 0.599920 | 1_3:-55231042 | Msa0126270:intron |
| TCAACGCGATCTCCGGTGAA+CGG | 0.601206 | 1_3:+55231736 | None:intergenic |
| GAACGGCAACCGAGAGCTGT+CGG | 0.601559 | 1_3:+55231753 | None:intergenic |
| TTACCTTGTATACATTCCCA+AGG | 0.606164 | 1_3:+55228762 | None:intergenic |
| TCTAATGAAAGCTCAAGGGT+TGG | 0.609689 | 1_3:-55230035 | Msa0126270:CDS |
| GCGATGGTGATCTCCCTGGA+CGG | 0.610099 | 1_3:+55231813 | None:intergenic |
| ACGGTAATATGGCAAATGCA+TGG | 0.610222 | 1_3:-55231046 | Msa0126270:CDS |
| TTGAGAGAGAAAATTCTCGA+GGG | 0.616981 | 1_3:+55231968 | None:intergenic |
| CCGTAACACTCGGCAAAGTG+TGG | 0.618577 | 1_3:+55231065 | None:intergenic |
| ATTTGACCATGCAATAGCAA+AGG | 0.621397 | 1_3:+55229227 | None:intergenic |
| GGAATCATGATCTCCGTCCA+GGG | 0.622815 | 1_3:-55231826 | Msa0126270:exon |
| GTAATCTAATGAAAGCTCAA+GGG | 0.626437 | 1_3:-55230039 | Msa0126270:CDS |
| ATTGAGAGAGAAAATTCTCG+AGG | 0.628319 | 1_3:+55231967 | None:intergenic |
| TAACATGCAATAGCTTCTTG+AGG | 0.628478 | 1_3:+55228631 | None:intergenic |
| GACCATGCAATAGCAAAGGT+AGG | 0.630488 | 1_3:+55229231 | None:intergenic |
| GCAGACCTTGTAATACTGCA+GGG | 0.633448 | 1_3:+55229164 | None:intergenic |
| GCACATCAAATGTACAAGAG+TGG | 0.634726 | 1_3:-55231356 | Msa0126270:CDS |
| GAGAGTGGTGGTTGTAGTGG+TGG | 0.636309 | 1_3:+55231791 | None:intergenic |
| GACACGGCCAAACTATGGCA+TGG | 0.637088 | 1_3:-55228593 | Msa0126270:CDS |
| ATGAGCCAACAAGCTGAGAG+TGG | 0.640591 | 1_3:+55231776 | None:intergenic |
| AGTAAATTATCGGTGCGAAG+CGG | 0.641514 | 1_3:+55231284 | None:intergenic |
| CAGAGACGGAGAAGGAACGA+AGG | 0.654980 | 1_3:+55231855 | None:intergenic |
| GTTCAAGTATGCATCAGGGA+AGG | 0.661650 | 1_3:+55228784 | None:intergenic |
| TCAAGTAATAGCGAATTGCA+AGG | 0.664537 | 1_3:+55230889 | None:intergenic |
| CCGGTGAACAGAGACGGAGA+AGG | 0.665829 | 1_3:+55231847 | None:intergenic |
| CAAGGTTCAAGTATGCATCA+GGG | 0.675585 | 1_3:+55228780 | None:intergenic |
| CCTGGTAATAAATTGCACCA+AGG | 0.681422 | 1_3:+55231258 | None:intergenic |
| GGCATACAGTTGTTACCTCG+AGG | 0.683086 | 1_3:-55229268 | Msa0126270:CDS |
| AGCCAACAAGCTGAGAGTGG+TGG | 0.690346 | 1_3:+55231779 | None:intergenic |
| GTTGTATACGCAATGCCTCG+AGG | 0.703270 | 1_3:+55229253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAATTTTCTATTAATAAT+TGG | + | chr1_3:55230214-55230233 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGATGTA+GGG | + | chr1_3:55231270-55231289 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAGATGT+AGG | + | chr1_3:55231271-55231290 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAGCATCAAATAT+GGG | + | chr1_3:55230281-55230300 | None:intergenic | 15.0% |
| !!! | TTGTTTAGTTTTTTTTATGT+AGG | - | chr1_3:55231000-55231019 | Msa0126270:intron | 15.0% |
| !!! | TAGTTACTGATTTAAATAAT+TGG | - | chr1_3:55231300-55231319 | Msa0126270:CDS | 15.0% |
| !!! | ATATTTTGCTTTCTTATTAA+TGG | - | chr1_3:55231681-55231700 | Msa0126270:CDS | 15.0% |
| !!! | AATTTATTTATTTTTGCTAC+AGG | - | chr1_3:55231786-55231805 | Msa0126270:CDS | 15.0% |
| !! | AATAGTATTGTATAAAAAGA+AGG | + | chr1_3:55231861-55231880 | None:intergenic | 15.0% |
| !!! | ACATTTTCTAAAAATATTTC+AGG | - | chr1_3:55231903-55231922 | Msa0126270:five_prime_UTR | 15.0% |
| !!! | GTTTTTCAATTTCATACTTA+GGG | - | chr1_3:55229182-55229201 | Msa0126270:CDS | 20.0% |
| !!! | TCAATCTTATTTTTGGTTAT+TGG | + | chr1_3:55230011-55230030 | None:intergenic | 20.0% |
| !!! | GATATAGTCAATCTTATTTT+TGG | + | chr1_3:55230018-55230037 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGCATCAAATATG+GGG | + | chr1_3:55230280-55230299 | None:intergenic | 20.0% |
| !!! | GAAAAAAAAAGCATCAAATA+TGG | + | chr1_3:55230282-55230301 | None:intergenic | 20.0% |
| !! | ATAGTAAAATTACCATTAGA+GGG | + | chr1_3:55230497-55230516 | None:intergenic | 20.0% |
| !! | AATAGTAAAATTACCATTAG+AGG | + | chr1_3:55230498-55230517 | None:intergenic | 20.0% |
| !! | CTTATATGTTATTATCTCTA+AGG | - | chr1_3:55230543-55230562 | Msa0126270:intron | 20.0% |
| !! | AAAGTTCAATTAATTAGAGA+AGG | + | chr1_3:55230591-55230610 | None:intergenic | 20.0% |
| !! | TTCTCTAATTAATTGAACTT+TGG | - | chr1_3:55230590-55230609 | Msa0126270:intron | 20.0% |
| !!! | ATGTTTGAATATGTATCTTT+TGG | - | chr1_3:55230756-55230775 | Msa0126270:intron | 20.0% |
| !! | CATAAAAAAAACTAAACAAC+AGG | + | chr1_3:55230999-55231018 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTTTTTATGTAGG+TGG | - | chr1_3:55231003-55231022 | Msa0126270:intron | 20.0% |
| !!! | CATTTTTATCAGGTAAAAAT+GGG | + | chr1_3:55231193-55231212 | None:intergenic | 20.0% |
| !!! | TTACTGATTTAAATAATTGG+TGG | - | chr1_3:55231303-55231322 | Msa0126270:CDS | 20.0% |
| !!! | TACTGATTTAAATAATTGGT+GGG | - | chr1_3:55231304-55231323 | Msa0126270:CDS | 20.0% |
| !! | AAAAAAAAAAAAGCCTTTCA+AGG | + | chr1_3:55232052-55232071 | None:intergenic | 20.0% |
| !! | AGAATTTTCTCTCTCAATTA+GGG | - | chr1_3:55228769-55228788 | Msa0126270:CDS | 25.0% |
| ! | AAACCAAAACCAAGTATAAT+TGG | + | chr1_3:55229166-55229185 | None:intergenic | 25.0% |
| !!! | GGTTTTTCAATTTCATACTT+AGG | - | chr1_3:55229181-55229200 | Msa0126270:CDS | 25.0% |
| !! | ACGAAATTGATTCAATAAGA+AGG | + | chr1_3:55229266-55229285 | None:intergenic | 25.0% |
| !! | TATTCTGTCTGTTATTTGTT+TGG | - | chr1_3:55229506-55229525 | Msa0126270:intron | 25.0% |
| !! | ATTCTGTCTGTTATTTGTTT+GGG | - | chr1_3:55229507-55229526 | Msa0126270:intron | 25.0% |
| !!! | TGTACTATTTTAGTGTTTAG+TGG | - | chr1_3:55229754-55229773 | Msa0126270:intron | 25.0% |
| !!! | AATTGAACTTTCCTTTTTTC+AGG | - | chr1_3:55229803-55229822 | Msa0126270:intron | 25.0% |
| ! | ATATTATTAACTGTTGCTGT+CGG | - | chr1_3:55230094-55230113 | Msa0126270:intron | 25.0% |
| !!! | AAAAAAAGCATCAAATATGG+GGG | + | chr1_3:55230279-55230298 | None:intergenic | 25.0% |
| ! | GAGATAATAACATATAAGCT+TGG | + | chr1_3:55230541-55230560 | None:intergenic | 25.0% |
| !! | AAAAAAGCATGTCAAATGTT+AGG | + | chr1_3:55230736-55230755 | None:intergenic | 25.0% |
| ! | TTATGAACTGTCAAATCTTA+TGG | - | chr1_3:55230811-55230830 | Msa0126270:intron | 25.0% |
| !!! | TTTTTTTTATGTAGGTGGTT+AGG | - | chr1_3:55231008-55231027 | Msa0126270:intron | 25.0% |
| !!! | CCATTTTTATCAGGTAAAAA+TGG | + | chr1_3:55231194-55231213 | None:intergenic | 25.0% |
| !!! | CCATTTTTACCTGATAAAAA+TGG | - | chr1_3:55231191-55231210 | Msa0126270:intron | 25.0% |
| !!! | AGTAAAAGACTAAGTATTGA+AGG | + | chr1_3:55231247-55231266 | None:intergenic | 25.0% |
| ! | GTAAATACATCATAGCTAAT+CGG | + | chr1_3:55231656-55231675 | None:intergenic | 25.0% |
| !!! | TTAATCCTTGTTTCTATATC+AGG | + | chr1_3:55231822-55231841 | None:intergenic | 25.0% |
| ! | TAACGTGTTAAGAATATGAT+AGG | - | chr1_3:55231989-55232008 | Msa0126270:five_prime_UTR | 25.0% |
| !!! | GAAGGAGAAGTGTTTTTATA+GGG | + | chr1_3:55228657-55228676 | None:intergenic | 30.0% |
| !!! | AGAAGGAGAAGTGTTTTTAT+AGG | + | chr1_3:55228658-55228677 | None:intergenic | 30.0% |
| ! | TTTCTTCTTCTCTACGATTT+TGG | + | chr1_3:55228743-55228762 | None:intergenic | 30.0% |
| ! | GAGAATTTTCTCTCTCAATT+AGG | - | chr1_3:55228768-55228787 | Msa0126270:CDS | 30.0% |
| TTTCATACTTAGGGTTTCTT+AGG | - | chr1_3:55229191-55229210 | Msa0126270:CDS | 30.0% | |
| TTCATACTTAGGGTTTCTTA+GGG | - | chr1_3:55229192-55229211 | Msa0126270:CDS | 30.0% | |
| ! | TTCAATAAGAAGGCATAAAC+TGG | + | chr1_3:55229256-55229275 | None:intergenic | 30.0% |
| CGAGGAATATGATTGTTTAA+CGG | - | chr1_3:55229291-55229310 | Msa0126270:intron | 30.0% | |
| ACCAAGGAGTAGTAAATTAT+CGG | + | chr1_3:55229460-55229479 | None:intergenic | 30.0% | |
| ACAGAATAGAAACATTTACC+TGG | + | chr1_3:55229494-55229513 | None:intergenic | 30.0% | |
| GGGTTCATATTTATAATGCT+TGG | - | chr1_3:55229527-55229546 | Msa0126270:intron | 30.0% | |
| !! | CAAAAAATGAAGAAGCACTT+AGG | - | chr1_3:55229637-55229656 | Msa0126270:intron | 30.0% |
| !!! | CTTTCCTTTTTTCAGGAAAA+AGG | - | chr1_3:55229810-55229829 | Msa0126270:intron | 30.0% |
| ATCAAGAATACATACCTCAA+TGG | + | chr1_3:55229871-55229890 | None:intergenic | 30.0% | |
| GGTTATTGGACAACAATATT+TGG | + | chr1_3:55229997-55230016 | None:intergenic | 30.0% | |
| TTTAGTACTAACACACAAAC+TGG | - | chr1_3:55230047-55230066 | Msa0126270:CDS | 30.0% | |
| AGCGTATAACATAGCAAAAA+AGG | + | chr1_3:55230307-55230326 | None:intergenic | 30.0% | |
| TTGAAGCAACTAATCAAGAA+TGG | + | chr1_3:55230335-55230354 | None:intergenic | 30.0% | |
| TTCAATATTTATCCCTCTGT+TGG | - | chr1_3:55230350-55230369 | Msa0126270:intron | 30.0% | |
| !! | TGTTATTATCTCTAAGGCAT+AGG | - | chr1_3:55230549-55230568 | Msa0126270:intron | 30.0% |
| !! | GTTATTATCTCTAAGGCATA+GGG | - | chr1_3:55230550-55230569 | Msa0126270:intron | 30.0% |
| GTAATCTAATGAAAGCTCAA+GGG | - | chr1_3:55230692-55230711 | Msa0126270:intron | 30.0% | |
| AAATGTTAGGACTTACTTCT+TGG | + | chr1_3:55230723-55230742 | None:intergenic | 30.0% | |
| ACTGTCAAATCTTATGGATA+AGG | - | chr1_3:55230817-55230836 | Msa0126270:intron | 30.0% | |
| !!! | AAGCCAAATTAAGAGTGTTT+TGG | + | chr1_3:55231096-55231115 | None:intergenic | 30.0% |
| !! | ACATTGGTGTTTTTCATTCT+GGG | + | chr1_3:55231148-55231167 | None:intergenic | 30.0% |
| TGATTTAAATAATTGGTGGG+TGG | - | chr1_3:55231307-55231326 | Msa0126270:CDS | 30.0% | |
| ! | GAAGTTACTAATTGCACTTT+TGG | - | chr1_3:55231713-55231732 | Msa0126270:CDS | 30.0% |
| GAATTCCTGATATAGAAACA+AGG | - | chr1_3:55231814-55231833 | Msa0126270:CDS | 30.0% | |
| GTGTTAAGAATATGATAGGT+TGG | - | chr1_3:55231993-55232012 | Msa0126270:five_prime_UTR | 30.0% | |
| !! | GATGCAACTAGAATTTTGAT+CGG | - | chr1_3:55232015-55232034 | Msa0126270:five_prime_UTR | 30.0% |
| CTTTATCTTTCCTACATCGA+CGG | - | chr1_3:55228599-55228618 | Msa0126270:CDS | 35.0% | |
| TTATAGGGAGATGAGAATCT+TGG | + | chr1_3:55228642-55228661 | None:intergenic | 35.0% | |
| GGTGAAGTTTCTGTTAAGAT+CGG | + | chr1_3:55228705-55228724 | None:intergenic | 35.0% | |
| !! | CGATTTTGGAAGATGTCTAT+GGG | + | chr1_3:55228729-55228748 | None:intergenic | 35.0% |
| !! | ACGATTTTGGAAGATGTCTA+TGG | + | chr1_3:55228730-55228749 | None:intergenic | 35.0% |
| TTGAGAGAGAAAATTCTCGA+GGG | + | chr1_3:55228766-55228785 | None:intergenic | 35.0% | |
| ATTGAGAGAGAAAATTCTCG+AGG | + | chr1_3:55228767-55228786 | None:intergenic | 35.0% | |
| AACATGAAAGGAATTGGATC+GGG | + | chr1_3:55228824-55228843 | None:intergenic | 35.0% | |
| GAACATGAAAGGAATTGGAT+CGG | + | chr1_3:55228825-55228844 | None:intergenic | 35.0% | |
| AAAGGGAACATGAAAGGAAT+TGG | + | chr1_3:55228830-55228849 | None:intergenic | 35.0% | |
| TGAATCAGTGAACGAAGAAA+GGG | + | chr1_3:55228847-55228866 | None:intergenic | 35.0% | |
| TCATACTTAGGGTTTCTTAG+GGG | - | chr1_3:55229193-55229212 | Msa0126270:CDS | 35.0% | |
| GAATCAATTTCGTACTTTCG+AGG | - | chr1_3:55229273-55229292 | Msa0126270:intron | 35.0% | |
| ACCGATAATTTACTACTCCT+TGG | - | chr1_3:55229456-55229475 | Msa0126270:intron | 35.0% | |
| TAATATGGCAAATGCATGGA+AGG | - | chr1_3:55229689-55229708 | Msa0126270:intron | 35.0% | |
| ! | GTTGCCTTTTTCCTGAAAAA+AGG | + | chr1_3:55229817-55229836 | None:intergenic | 35.0% |
| TCAAGTAATAGCGAATTGCA+AGG | + | chr1_3:55229845-55229864 | None:intergenic | 35.0% | |
| CTATTACTTGATTGCCATTG+AGG | - | chr1_3:55229854-55229873 | Msa0126270:intron | 35.0% | |
| TCACAAATGTTAGCTGTGTT+TGG | - | chr1_3:55230130-55230149 | Msa0126270:intron | 35.0% | |
| ATTGGCATCAAACAAACTCA+AGG | + | chr1_3:55230196-55230215 | None:intergenic | 35.0% | |
| TGTCATTAACTATGTTCTGC+AGG | - | chr1_3:55230648-55230667 | Msa0126270:intron | 35.0% | |
| GTTGATGCTCATAGTAACTT+GGG | - | chr1_3:55230670-55230689 | Msa0126270:intron | 35.0% | |
| GGTAATCTAATGAAAGCTCA+AGG | - | chr1_3:55230691-55230710 | Msa0126270:intron | 35.0% | |
| ATTTCAGATATGTTGCACTG+TGG | + | chr1_3:55230872-55230891 | None:intergenic | 35.0% | |
| ! | CAGTGCAACATATCTGAAAT+TGG | - | chr1_3:55230872-55230891 | Msa0126270:intron | 35.0% |
| TACAATAATAGTCCCGATCT+TGG | - | chr1_3:55231049-55231068 | Msa0126270:CDS | 35.0% | |
| GAGCCAAAACACTCTTAATT+TGG | - | chr1_3:55231090-55231109 | Msa0126270:CDS | 35.0% | |
| !! | GACATTGGTGTTTTTCATTC+TGG | + | chr1_3:55231149-55231168 | None:intergenic | 35.0% |
| AAAACACCAATGTCTTCCAT+TGG | - | chr1_3:55231155-55231174 | Msa0126270:intron | 35.0% | |
| TCTGTATCGAACTGTGAATT+TGG | + | chr1_3:55231341-55231360 | None:intergenic | 35.0% | |
| AAGTTGTTGTCTTCAAAGCA+TGG | - | chr1_3:55231365-55231384 | Msa0126270:CDS | 35.0% | |
| ! | CAGAATCTAACATTTTGTGC+AGG | - | chr1_3:55231442-55231461 | Msa0126270:intron | 35.0% |
| ATTTGACCATGCAATAGCAA+AGG | + | chr1_3:55231507-55231526 | None:intergenic | 35.0% | |
| AGCATGTGAATATGAAAGTG+AGG | + | chr1_3:55231592-55231611 | None:intergenic | 35.0% | |
| TGCTTGAATGAACTTCTGTT+AGG | - | chr1_3:55231608-55231627 | Msa0126270:intron | 35.0% | |
| ATACATCATAGCTAATCGGA+CGG | + | chr1_3:55231652-55231671 | None:intergenic | 35.0% | |
| GTGCAATTAGTAACTTCTAC+AGG | + | chr1_3:55231710-55231729 | None:intergenic | 35.0% | |
| TTACCTTGTATACATTCCCA+AGG | + | chr1_3:55231972-55231991 | None:intergenic | 35.0% | |
| !! | AGAATTTTGATCGGCATTGA+TGG | - | chr1_3:55232024-55232043 | Msa0126270:five_prime_UTR | 35.0% |
| TAACATGCAATAGCTTCTTG+AGG | + | chr1_3:55232103-55232122 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGATGTCTATGGG+AGG | + | chr1_3:55228726-55228745 | None:intergenic | 40.0% |
| ACGAAGAAAGGGAACATGAA+AGG | + | chr1_3:55228836-55228855 | None:intergenic | 40.0% | |
| GTGAATCAGTGAACGAAGAA+AGG | + | chr1_3:55228848-55228867 | None:intergenic | 40.0% | |
| ! | GCGCCAATTATACTTGGTTT+TGG | - | chr1_3:55229160-55229179 | Msa0126270:intron | 40.0% |
| GCACATCAAATGTACAAGAG+TGG | - | chr1_3:55229375-55229394 | Msa0126270:intron | 40.0% | |
| AGTAAATTATCGGTGCGAAG+CGG | + | chr1_3:55229450-55229469 | None:intergenic | 40.0% | |
| CCTGGTAATAAATTGCACCA+AGG | + | chr1_3:55229476-55229495 | None:intergenic | 40.0% | |
| ! | CCTTGGTGCAATTTATTACC+AGG | - | chr1_3:55229473-55229492 | Msa0126270:intron | 40.0% |
| !!! | TTGTTTTTGCGTGAATTGCG+TGG | - | chr1_3:55229570-55229589 | Msa0126270:intron | 40.0% |
| !! | GCATGATTTTGATATGTGCG+TGG | - | chr1_3:55229614-55229633 | Msa0126270:intron | 40.0% |
| TGCCATATTACCGTAACACT+CGG | + | chr1_3:55229679-55229698 | None:intergenic | 40.0% | |
| ACGGTAATATGGCAAATGCA+TGG | - | chr1_3:55229685-55229704 | Msa0126270:intron | 40.0% | |
| CTAATGTGCCACAACTTTGT+TGG | - | chr1_3:55229725-55229744 | Msa0126270:intron | 40.0% | |
| ! | CGTGAACTTACATGTTGCTT+TGG | - | chr1_3:55229921-55229940 | Msa0126270:intron | 40.0% |
| ACACACAAACTGGATTCTGT+TGG | - | chr1_3:55230057-55230076 | Msa0126270:CDS | 40.0% | |
| AACTCAAGGTGAGGCTTATA+TGG | + | chr1_3:55230182-55230201 | None:intergenic | 40.0% | |
| CATCAAACAAACTCAAGGTG+AGG | + | chr1_3:55230191-55230210 | None:intergenic | 40.0% | |
| GACCATGCATCAGCAAAATT+GGG | + | chr1_3:55230396-55230415 | None:intergenic | 40.0% | |
| TGACCATGCATCAGCAAAAT+TGG | + | chr1_3:55230397-55230416 | None:intergenic | 40.0% | |
| !! | ACTTGCTATCAACCCTCTAA+TGG | - | chr1_3:55230482-55230501 | Msa0126270:intron | 40.0% |
| ! | GGTTGATGCTCATAGTAACT+TGG | - | chr1_3:55230669-55230688 | Msa0126270:intron | 40.0% |
| TCTAATGAAAGCTCAAGGGT+TGG | - | chr1_3:55230696-55230715 | Msa0126270:intron | 40.0% | |
| TCAATGCAGTTCACCAAGAT+CGG | + | chr1_3:55231065-55231084 | None:intergenic | 40.0% | |
| ! | TTGGTGAACTGCATTGATGT+TGG | - | chr1_3:55231068-55231087 | Msa0126270:CDS | 40.0% |
| GTATGACCAATGGAAGACAT+TGG | + | chr1_3:55231164-55231183 | None:intergenic | 40.0% | |
| !!! | AGCACATGGCCATTTTTATC+AGG | + | chr1_3:55231203-55231222 | None:intergenic | 40.0% |
| TGATAAAAATGGCCATGTGC+TGG | - | chr1_3:55231202-55231221 | Msa0126270:intron | 40.0% | |
| ACTATTTGCAGTCTTGCAGA+TGG | + | chr1_3:55231422-55231441 | None:intergenic | 40.0% | |
| !! | AACCTACCTTTGCTATTGCA+TGG | - | chr1_3:55231498-55231517 | Msa0126270:intron | 40.0% |
| ATTGCATGGTCAAATCTTGC+TGG | - | chr1_3:55231512-55231531 | Msa0126270:intron | 40.0% | |
| ! | AAATCTTGCTGGTCTGTTCA+TGG | - | chr1_3:55231523-55231542 | Msa0126270:intron | 40.0% |
| CGGACGGTCTGATTTATAAA+AGG | + | chr1_3:55231636-55231655 | None:intergenic | 40.0% | |
| CAAGGTTCAAGTATGCATCA+GGG | + | chr1_3:55231954-55231973 | None:intergenic | 40.0% | |
| CTGATGCATACTTGAACCTT+GGG | - | chr1_3:55231953-55231972 | Msa0126270:five_prime_UTR | 40.0% | |
| GAACCTTGGGAATGTATACA+AGG | - | chr1_3:55231966-55231985 | Msa0126270:five_prime_UTR | 40.0% | |
| ATCAACATGCTCTTCAGACA+CGG | - | chr1_3:55232122-55232141 | Msa0126270:five_prime_UTR | 40.0% | |
| !! | TCTTGGTTCGGAAGAGATCT+GGG | + | chr1_3:55228625-55228644 | None:intergenic | 45.0% |
| !! | ATCTTGGTTCGGAAGAGATC+TGG | + | chr1_3:55228626-55228645 | None:intergenic | 45.0% |
| GGGAGATGAGAATCTTGGTT+CGG | + | chr1_3:55228637-55228656 | None:intergenic | 45.0% | |
| AAGAAAACGCGAACTCGAGA+AGG | + | chr1_3:55228675-55228694 | None:intergenic | 45.0% | |
| ATGATTCCGGTGAACAGAGA+CGG | + | chr1_3:55228893-55228912 | None:intergenic | 45.0% | |
| CTAGAATCATGAGCGCGTAA+AGG | + | chr1_3:55229064-55229083 | None:intergenic | 45.0% | |
| TCACACGCGCCAATTATACT+TGG | - | chr1_3:55229154-55229173 | Msa0126270:intron | 45.0% | |
| TGCCGAGTGTTACGGTAATA+TGG | - | chr1_3:55229674-55229693 | Msa0126270:intron | 45.0% | |
| ATGGCAAATGCATGGAAGGT+AGG | - | chr1_3:55229693-55229712 | Msa0126270:intron | 45.0% | |
| CAACACGTCCAACAAAGTTG+TGG | + | chr1_3:55229736-55229755 | None:intergenic | 45.0% | |
| ACTGTTGCTGTCGGTAGTAA+TGG | - | chr1_3:55230103-55230122 | Msa0126270:intron | 45.0% | |
| TTGCTGTCGGTAGTAATGGT+AGG | - | chr1_3:55230107-55230126 | Msa0126270:intron | 45.0% | |
| ! | GTCCCAATTTTGCTGATGCA+TGG | - | chr1_3:55230391-55230410 | Msa0126270:intron | 45.0% |
| TACGCATGTATGCACTAGCT+AGG | + | chr1_3:55230422-55230441 | None:intergenic | 45.0% | |
| GCTAGTGCATACATGCGTAA+AGG | - | chr1_3:55230423-55230442 | Msa0126270:intron | 45.0% | |
| TATGTTGCACTGTGGCAGAA+AGG | + | chr1_3:55230864-55230883 | None:intergenic | 45.0% | |
| ACTGTGCAGCATAGAGAAAC+TGG | + | chr1_3:55230932-55230951 | None:intergenic | 45.0% | |
| ! | ATGCTGCACAGTTTGAGATG+AGG | - | chr1_3:55230940-55230959 | Msa0126270:intron | 45.0% |
| ! | AGTTTGAGATGAGGCTCTAC+TGG | - | chr1_3:55230949-55230968 | Msa0126270:intron | 45.0% |
| TACTGGATTCCCAGTATGAG+CGG | - | chr1_3:55230966-55230985 | Msa0126270:intron | 45.0% | |
| CAATGCAGTTCACCAAGATC+GGG | + | chr1_3:55231064-55231083 | None:intergenic | 45.0% | |
| AGCAGAGAGATGTCTCAAAC+TGG | + | chr1_3:55231119-55231138 | None:intergenic | 45.0% | |
| ! | AGTTTGAGACATCTCTCTGC+TGG | - | chr1_3:55231118-55231137 | Msa0126270:CDS | 45.0% |
| ! | GTTTGAGACATCTCTCTGCT+GGG | - | chr1_3:55231119-55231138 | Msa0126270:CDS | 45.0% |
| !! | AAGTATTGAAGGAACCCTCC+AGG | + | chr1_3:55231236-55231255 | None:intergenic | 45.0% |
| CAAAGCATGGACTCAGATGA+TGG | - | chr1_3:55231378-55231397 | Msa0126270:CDS | 45.0% | |
| GACCATGCAATAGCAAAGGT+AGG | + | chr1_3:55231503-55231522 | None:intergenic | 45.0% | |
| GCAGACCTTGTAATACTGCA+GGG | + | chr1_3:55231570-55231589 | None:intergenic | 45.0% | |
| AAGTATGCATCAGGGAAGGA+AGG | + | chr1_3:55231946-55231965 | None:intergenic | 45.0% | |
| GTTCAAGTATGCATCAGGGA+AGG | + | chr1_3:55231950-55231969 | None:intergenic | 45.0% | |
| CCAAGGTTCAAGTATGCATC+AGG | + | chr1_3:55231955-55231974 | None:intergenic | 45.0% | |
| CCTGATGCATACTTGAACCT+TGG | - | chr1_3:55231952-55231971 | Msa0126270:five_prime_UTR | 45.0% | |
| !! | GGCATTGATGGATCCTTGAA+AGG | - | chr1_3:55232036-55232055 | Msa0126270:five_prime_UTR | 45.0% |
| ATCCCTAAAGCCTGATGAAG+GGG | + | chr1_3:55232079-55232098 | None:intergenic | 45.0% | |
| CATCCCTAAAGCCTGATGAA+GGG | + | chr1_3:55232080-55232099 | None:intergenic | 45.0% | |
| GAAAGGAATTGGATCGGGAG+AGG | + | chr1_3:55228819-55228838 | None:intergenic | 50.0% | |
| ACGGAGAAGGAACGAAGGAT+CGG | + | chr1_3:55228874-55228893 | None:intergenic | 50.0% | |
| CTGGACGGAGATCATGATTC+CGG | + | chr1_3:55228906-55228925 | None:intergenic | 50.0% | |
| GGAATCATGATCTCCGTCCA+GGG | - | chr1_3:55228905-55228924 | Msa0126270:intron | 50.0% | |
| AACCACCACTCTCAGCTTGT+TGG | - | chr1_3:55228950-55228969 | Msa0126270:intron | 50.0% | |
| ATGAGCCAACAAGCTGAGAG+TGG | + | chr1_3:55228958-55228977 | None:intergenic | 50.0% | |
| CGCGCTCATGATTCTAGTGA+AGG | - | chr1_3:55229067-55229086 | Msa0126270:intron | 50.0% | |
| CTCGAGATCGATGCTTCTTG+TGG | - | chr1_3:55229122-55229141 | Msa0126270:intron | 50.0% | |
| CCACACTTTGCCGAGTGTTA+CGG | - | chr1_3:55229666-55229685 | Msa0126270:intron | 50.0% | |
| ACTGGCTATAGAGCAGGTTG+GGG | + | chr1_3:55230909-55230928 | None:intergenic | 50.0% | |
| ! | GACTGGCTATAGAGCAGGTT+GGG | + | chr1_3:55230910-55230929 | None:intergenic | 50.0% |
| !! | AACTGGACTGGCTATAGAGC+AGG | + | chr1_3:55230915-55230934 | None:intergenic | 50.0% |
| GCAGCATAGAGAAACTGGAC+TGG | + | chr1_3:55230927-55230946 | None:intergenic | 50.0% | |
| !! | GGTAGAGTACCGCTCATACT+GGG | + | chr1_3:55230978-55230997 | None:intergenic | 50.0% |
| !! | AGGTAGAGTACCGCTCATAC+TGG | + | chr1_3:55230979-55230998 | None:intergenic | 50.0% |
| TGGGAGACGAGTATGACCAA+TGG | + | chr1_3:55231174-55231193 | None:intergenic | 50.0% | |
| ! | GCATGGACTCAGATGATGGT+TGG | - | chr1_3:55231382-55231401 | Msa0126270:CDS | 50.0% |
| GGCATACAGTTGTTACCTCG+AGG | - | chr1_3:55231463-55231482 | Msa0126270:intron | 50.0% | |
| GTTGTATACGCAATGCCTCG+AGG | + | chr1_3:55231481-55231500 | None:intergenic | 50.0% | |
| CAGAGCCCTGCAGTATTACA+AGG | - | chr1_3:55231562-55231581 | Msa0126270:intron | 50.0% | |
| GGCAGACCTTGTAATACTGC+AGG | + | chr1_3:55231571-55231590 | None:intergenic | 50.0% | |
| !!! | TTTTTTCCCCCCCCTTCATC+AGG | - | chr1_3:55232066-55232085 | Msa0126270:five_prime_UTR | 50.0% |
| TCCCTAAAGCCTGATGAAGG+GGG | + | chr1_3:55232078-55232097 | None:intergenic | 50.0% | |
| GCATCCCTAAAGCCTGATGA+AGG | + | chr1_3:55232081-55232100 | None:intergenic | 50.0% | |
| CTTCAGACACGGCCAAACTA+TGG | - | chr1_3:55232133-55232152 | Msa0126270:five_prime_UTR | 50.0% | |
| CAGAGACGGAGAAGGAACGA+AGG | + | chr1_3:55228879-55228898 | None:intergenic | 55.0% | |
| CCTTCTCCGTCTCTGTTCAC+CGG | - | chr1_3:55228884-55228903 | Msa0126270:intron | 55.0% | |
| CGGAATCATGATCTCCGTCC+AGG | - | chr1_3:55228904-55228923 | Msa0126270:intron | 55.0% | |
| GAGAGTGGTGGTTGTAGTGG+TGG | + | chr1_3:55228943-55228962 | None:intergenic | 55.0% | |
| GCTGAGAGTGGTGGTTGTAG+TGG | + | chr1_3:55228946-55228965 | None:intergenic | 55.0% | |
| AGCCAACAAGCTGAGAGTGG+TGG | + | chr1_3:55228955-55228974 | None:intergenic | 55.0% | |
| TTGGCTCATCCGACAGCTCT+CGG | - | chr1_3:55228969-55228988 | Msa0126270:intron | 55.0% | |
| TCAACGCGATCTCCGGTGAA+CGG | + | chr1_3:55228998-55229017 | None:intergenic | 55.0% | |
| GAACGGTTCAACGCGATCTC+CGG | + | chr1_3:55229005-55229024 | None:intergenic | 55.0% | |
| GGCTCTTGCTTAACGGCGAA+CGG | + | chr1_3:55229022-55229041 | None:intergenic | 55.0% | |
| CGACGACGGCTCTTGCTTAA+CGG | + | chr1_3:55229029-55229048 | None:intergenic | 55.0% | |
| GGCAATAACGTGAGCGACGA+CGG | + | chr1_3:55229043-55229062 | None:intergenic | 55.0% | |
| CCGTAACACTCGGCAAAGTG+TGG | + | chr1_3:55229669-55229688 | None:intergenic | 55.0% | |
| GCAGCAGCAGAACCAACAGA+GGG | + | chr1_3:55230365-55230384 | None:intergenic | 55.0% | |
| TGCAGCAGCAGAACCAACAG+AGG | + | chr1_3:55230366-55230385 | None:intergenic | 55.0% | |
| !! | GGACTGGCTATAGAGCAGGT+TGG | + | chr1_3:55230911-55230930 | None:intergenic | 55.0% |
| ! | AAAATGGCCATGTGCTGGCC+TGG | - | chr1_3:55231207-55231226 | Msa0126270:intron | 55.0% |
| ! | GCTGGTCTGTTCATGGAGTC+TGG | - | chr1_3:55231530-55231549 | Msa0126270:intron | 55.0% |
| CTAAAGCCTGATGAAGGGGG+GGG | + | chr1_3:55232075-55232094 | None:intergenic | 55.0% | |
| CCTAAAGCCTGATGAAGGGG+GGG | + | chr1_3:55232076-55232095 | None:intergenic | 55.0% | |
| CCCTAAAGCCTGATGAAGGG+GGG | + | chr1_3:55232077-55232096 | None:intergenic | 55.0% | |
| CCCCCCTTCATCAGGCTTTA+GGG | - | chr1_3:55232074-55232093 | Msa0126270:five_prime_UTR | 55.0% | |
| GACACGGCCAAACTATGGCA+TGG | - | chr1_3:55232138-55232157 | Msa0126270:five_prime_UTR | 55.0% | |
| GAGATCTGGGCCGTCGATGT+AGG | + | chr1_3:55228612-55228631 | None:intergenic | 60.0% | |
| CCGGTGAACAGAGACGGAGA+AGG | + | chr1_3:55228887-55228906 | None:intergenic | 60.0% | |
| GCGATGGTGATCTCCCTGGA+CGG | + | chr1_3:55228921-55228940 | None:intergenic | 60.0% | |
| ! | GGTGGTTGTAGTGGTGGCGA+TGG | + | chr1_3:55228937-55228956 | None:intergenic | 60.0% |
| GAACGGCAACCGAGAGCTGT+CGG | + | chr1_3:55228981-55229000 | None:intergenic | 60.0% | |
| AGCTCTCGGTTGCCGTTCAC+CGG | - | chr1_3:55228983-55229002 | Msa0126270:intron | 60.0% | |
| AAGGAACCCTCCAGGCTTCC+AGG | + | chr1_3:55231228-55231247 | None:intergenic | 60.0% | |
| CCCCCCCTTCATCAGGCTTT+AGG | - | chr1_3:55232073-55232092 | Msa0126270:five_prime_UTR | 60.0% | |
| GGTGGCGATGGTGATCTCCC+TGG | + | chr1_3:55228925-55228944 | None:intergenic | 65.0% | |
| CAGGCTTCCAGGCCAGCACA+TGG | + | chr1_3:55231217-55231236 | None:intergenic | 65.0% | |
| ! | CATGTGCTGGCCTGGAAGCC+TGG | - | chr1_3:55231215-55231234 | Msa0126270:intron | 65.0% |
| ! | TGCTGGCCTGGAAGCCTGGA+GGG | - | chr1_3:55231219-55231238 | Msa0126270:intron | 65.0% |
| ! | GTGCTGGCCTGGAAGCCTGG+AGG | - | chr1_3:55231218-55231237 | Msa0126270:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55228588 | 55232165 | 55228588 | ID=Msa0126270;Name=Msa0126270 |
| chr1_3 | mRNA | 55228588 | 55232165 | 55228588 | ID=Msa0126270-mRNA-1;Parent=Msa0126270;Name=Msa0126270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=323|1|0.88|1|1|0.88|9|0|303 |
| chr1_3 | exon | 55228588 | 55228665 | 55228588 | ID=Msa0126270-mRNA-1:exon:17161;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55228766 | 55228828 | 55228766 | ID=Msa0126270-mRNA-1:exon:17160;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55229170 | 55229289 | 55229170 | ID=Msa0126270-mRNA-1:exon:17159;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55230027 | 55230083 | 55230027 | ID=Msa0126270-mRNA-1:exon:17158;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55230250 | 55230366 | 55230250 | ID=Msa0126270-mRNA-1:exon:17157;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55230878 | 55230928 | 55230878 | ID=Msa0126270-mRNA-1:exon:17156;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55231043 | 55231141 | 55231043 | ID=Msa0126270-mRNA-1:exon:17155;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55231259 | 55231404 | 55231259 | ID=Msa0126270-mRNA-1:exon:17154;Parent=Msa0126270-mRNA-1 |
| chr1_3 | exon | 55231665 | 55232165 | 55231665 | ID=Msa0126270-mRNA-1:exon:17153;Parent=Msa0126270-mRNA-1 |
| chr1_3 | five_prime_UTR | 55231843 | 55232165 | 55231843 | ID=Msa0126270-mRNA-1:five_prime_utr;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55231665 | 55231842 | 55231665 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55231259 | 55231404 | 55231259 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55231043 | 55231141 | 55231043 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55230878 | 55230928 | 55230878 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55230250 | 55230366 | 55230250 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55230027 | 55230083 | 55230027 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55229170 | 55229289 | 55229170 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55228766 | 55228828 | 55228766 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| chr1_3 | CDS | 55228588 | 55228665 | 55228588 | ID=Msa0126270-mRNA-1:cds;Parent=Msa0126270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
