Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279490 | XP_003629017.2 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279490 | sp|Q8L7A9|AP4E_ARATH | 85.793 | 542 | 77 | 0 | 1 | 542 | 1 | 542 | 0.0 | 971 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279490 | G7L7U1 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033160 | Msa1279490 | 0.807011 | 6.225416e-50 | -8.615850e-47 |
| Msa0042330 | Msa1279490 | 0.819986 | 8.706839e-53 | -8.615850e-47 |
| Msa0058210 | Msa1279490 | 0.808619 | 2.833121e-50 | -8.615850e-47 |
| Msa0707000 | Msa1279490 | 0.806677 | 7.323462e-50 | -8.615850e-47 |
| Msa0827490 | Msa1279490 | 0.804738 | 1.870636e-49 | -8.615850e-47 |
| Msa0126270 | Msa1279490 | 0.829990 | 3.778603e-55 | -8.615850e-47 |
| Msa0138560 | Msa1279490 | 0.824147 | 9.448024e-54 | -8.615850e-47 |
| Msa0183640 | Msa1279490 | 0.816593 | 5.105610e-52 | -8.615850e-47 |
| Msa0197630 | Msa1279490 | 0.810359 | 1.199090e-50 | -8.615850e-47 |
| Msa0216580 | Msa1279490 | 0.800715 | 1.265553e-48 | -8.615850e-47 |
| Msa1256070 | Msa1279490 | 0.817509 | 3.177770e-52 | -8.615850e-47 |
| Msa1279490 | Msa1296250 | 0.857523 | 1.540711e-62 | -8.615850e-47 |
| Msa1279490 | Msa1300950 | 0.887678 | 1.155589e-72 | -8.615850e-47 |
| Msa1279490 | Msa1381100 | 0.827624 | 1.411317e-54 | -8.615850e-47 |
| Msa1279490 | Msa1384820 | 0.802278 | 6.052756e-49 | -8.615850e-47 |
| Msa1279490 | Msa1404220 | 0.872374 | 3.339960e-67 | -8.615850e-47 |
| Msa1279490 | Msa1424560 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
| Msa1279490 | Msa1437840 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa1279490 | Msa1442160 | 0.835835 | 1.331529e-56 | -8.615850e-47 |
| Msa1279490 | Msa1443000 | 0.826019 | 3.413600e-54 | -8.615850e-47 |
| Msa0376450 | Msa1279490 | 0.801756 | 7.746993e-49 | -8.615850e-47 |
| Msa0378410 | Msa1279490 | 0.850982 | 1.193507e-60 | -8.615850e-47 |
| Msa0425120 | Msa1279490 | 0.829534 | 4.878995e-55 | -8.615850e-47 |
| Msa0471720 | Msa1279490 | 0.802238 | 6.169487e-49 | -8.615850e-47 |
| Msa0472780 | Msa1279490 | 0.826520 | 2.593564e-54 | -8.615850e-47 |
| Msa1040110 | Msa1279490 | 0.890211 | 1.209740e-73 | -8.615850e-47 |
| Msa1042400 | Msa1279490 | 0.801758 | 7.742383e-49 | -8.615850e-47 |
| Msa1083420 | Msa1279490 | 0.903313 | 3.947735e-79 | -8.615850e-47 |
| Msa0310900 | Msa1279490 | 0.820944 | 5.247198e-53 | -8.615850e-47 |
| Msa0328420 | Msa1279490 | 0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa1123290 | Msa1279490 | 0.835171 | 1.959738e-56 | -8.615850e-47 |
| Msa1123310 | Msa1279490 | 0.834414 | 3.038821e-56 | -8.615850e-47 |
| Msa1128170 | Msa1279490 | 0.878252 | 3.264634e-69 | -8.615850e-47 |
| Msa1165370 | Msa1279490 | 0.871101 | 8.831774e-67 | -8.615850e-47 |
| Msa1215020 | Msa1279490 | 0.832675 | 8.257237e-56 | -8.615850e-47 |
| Msa0516510 | Msa1279490 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0524460 | Msa1279490 | 0.805872 | 1.082097e-49 | -8.615850e-47 |
| Msa0573100 | Msa1279490 | 0.827573 | 1.452182e-54 | -8.615850e-47 |
| Msa0967650 | Msa1279490 | 0.800992 | 1.110970e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279490 | MtrunA17_Chr8g0369781 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1113 |
| Msa1279490 | MtrunA17_Chr5g0413831 | 25.755 | 497 | 353 | 5 | 19 | 511 | 4 | 488 | 9.15e-59 | 209 |
| Msa1279490 | MtrunA17_Chr8g0364891 | 25.755 | 497 | 353 | 5 | 19 | 511 | 4 | 488 | 9.25e-53 | 192 |
| Msa1279490 | MtrunA17_Chr2g0320721 | 24.606 | 508 | 355 | 11 | 28 | 519 | 12 | 507 | 5.12e-52 | 191 |
| Msa1279490 | MtrunA17_Chr8g0391151 | 25.745 | 369 | 251 | 6 | 41 | 407 | 32 | 379 | 1.50e-21 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279490 | AT1G31730.1 | 85.793 | 542 | 77 | 0 | 1 | 542 | 1 | 542 | 0.0 | 971 |
| Msa1279490 | AT1G60070.1 | 26.962 | 497 | 347 | 5 | 19 | 511 | 4 | 488 | 1.45e-61 | 218 |
| Msa1279490 | AT1G60070.2 | 26.962 | 497 | 347 | 5 | 19 | 511 | 4 | 488 | 1.60e-61 | 218 |
| Msa1279490 | AT1G23900.1 | 25.956 | 497 | 352 | 5 | 19 | 511 | 4 | 488 | 4.12e-56 | 202 |
| Msa1279490 | AT1G23900.2 | 25.956 | 497 | 352 | 5 | 19 | 511 | 4 | 488 | 4.12e-56 | 202 |
| Msa1279490 | AT1G23900.3 | 26.025 | 488 | 345 | 5 | 28 | 511 | 1 | 476 | 8.49e-55 | 199 |
| Msa1279490 | AT5G22770.5 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22770.1 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22770.4 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22770.6 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22770.2 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22770.3 | 26.190 | 462 | 314 | 11 | 65 | 511 | 48 | 497 | 3.46e-52 | 192 |
| Msa1279490 | AT5G22780.2 | 25.974 | 462 | 315 | 11 | 65 | 511 | 48 | 497 | 1.40e-51 | 190 |
| Msa1279490 | AT5G22780.1 | 25.974 | 462 | 315 | 11 | 65 | 511 | 48 | 497 | 1.40e-51 | 190 |
| Msa1279490 | AT1G48760.2 | 26.330 | 376 | 240 | 7 | 41 | 407 | 31 | 378 | 1.04e-25 | 112 |
| Msa1279490 | AT1G48760.3 | 26.330 | 376 | 240 | 7 | 41 | 407 | 31 | 378 | 1.04e-25 | 112 |
| Msa1279490 | AT1G48760.1 | 26.330 | 376 | 240 | 7 | 41 | 407 | 31 | 378 | 1.04e-25 | 112 |
| Msa1279490 | AT1G23935.2 | 24.422 | 303 | 213 | 5 | 7 | 305 | 853 | 1143 | 2.34e-15 | 80.1 |
| Msa1279490 | AT1G23935.3 | 24.422 | 303 | 213 | 5 | 7 | 305 | 852 | 1142 | 2.42e-15 | 80.1 |
| Msa1279490 | AT1G23935.1 | 24.422 | 303 | 213 | 5 | 7 | 305 | 903 | 1193 | 2.63e-15 | 80.1 |
Find 141 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATGTGATGTGTGAATT+TGG | 0.138836 | 8_3:-16516377 | None:intergenic |
| AGGTTATTTGTTGGGTTCTT+GGG | 0.216014 | 8_3:+16520992 | Msa1279490:intron |
| CCGTTATTGGCGATATAATT+AGG | 0.223296 | 8_3:+16518535 | Msa1279490:CDS |
| CAGGTTATTTGTTGGGTTCT+TGG | 0.225264 | 8_3:+16520991 | Msa1279490:intron |
| CGATGATCCGATTCCGTATA+AGG | 0.231911 | 8_3:+16517155 | Msa1279490:CDS |
| GAACACATGTACACCGTTAT+TGG | 0.232178 | 8_3:+16518522 | Msa1279490:CDS |
| TGTTGGGTTCTTGGGGAATA+TGG | 0.245639 | 8_3:+16521000 | Msa1279490:CDS |
| ACTCTTTCATCTTCCGTTTA+GGG | 0.247975 | 8_3:-16516669 | None:intergenic |
| ATTGGTTGTTACGGAGGTTT+TGG | 0.259354 | 8_3:-16516466 | None:intergenic |
| CAACTTGGGATTGGGATATA+TGG | 0.275024 | 8_3:-16518622 | None:intergenic |
| TACTCTTTCATCTTCCGTTT+AGG | 0.276919 | 8_3:-16516670 | None:intergenic |
| ATCTTCCGTTTAGGGATATC+TGG | 0.279722 | 8_3:-16516661 | None:intergenic |
| CTCGGTCACGACGCTTCTTT+CGG | 0.282371 | 8_3:+16516721 | Msa1279490:CDS |
| TTGGATCCGGTGATGGTTCC+CGG | 0.293013 | 8_3:-16516447 | None:intergenic |
| TGCCGTCATTGACTGCTTAG+AGG | 0.309383 | 8_3:+16518890 | Msa1279490:CDS |
| GATTCGGTCTTCTTCGGCTT+TGG | 0.319752 | 8_3:-16516596 | None:intergenic |
| GAGTCATATTTGCGCATTAT+TGG | 0.327916 | 8_3:+16520843 | Msa1279490:CDS |
| GGATATCTGGTTCGGAGATT+CGG | 0.335176 | 8_3:-16516648 | None:intergenic |
| CACTGGGAAGTTATGCGATA+TGG | 0.347901 | 8_3:+16521056 | Msa1279490:CDS |
| CGGTTGATTGCAGAAGGATT+TGG | 0.350957 | 8_3:+16520677 | Msa1279490:CDS |
| CGCAGCAGCTTCTAACAACT+TGG | 0.351640 | 8_3:-16518637 | None:intergenic |
| GATCGGAGGGGTTGTGGTTA+TGG | 0.353868 | 8_3:-16516402 | None:intergenic |
| GCTTCCATCAGTGTTTCTTC+AGG | 0.362276 | 8_3:+16520875 | Msa1279490:CDS |
| TGATAATGATCCTGGTGTTA+TGG | 0.371274 | 8_3:+16517098 | Msa1279490:CDS |
| TGGAGATCTTGTGAATATTA+AGG | 0.376401 | 8_3:+16520637 | Msa1279490:CDS |
| TGAATGTGATGTGTGAATTT+GGG | 0.380065 | 8_3:-16516376 | None:intergenic |
| GATTACGATTCGGTCTTCTT+CGG | 0.392121 | 8_3:-16516602 | None:intergenic |
| ATTCACCGATTGATTTGATT+AGG | 0.392413 | 8_3:-16516567 | None:intergenic |
| TGGTGATAATCATAGCTCTT+AGG | 0.393881 | 8_3:-16517231 | None:intergenic |
| CCCGGAGGTGGTTACGGTGG+TGG | 0.394575 | 8_3:-16516429 | None:intergenic |
| CTGAAAATTCTTGCATTGTT+GGG | 0.395186 | 8_3:+16518477 | Msa1279490:CDS |
| CACTTCCACATTGGAAGACT+TGG | 0.396065 | 8_3:-16520371 | None:intergenic |
| GCATAACTTCCCAGTGATAT+AGG | 0.398047 | 8_3:-16521049 | None:intergenic |
| CTGATTACAGGTTATTTGTT+GGG | 0.402283 | 8_3:+16520984 | Msa1279490:intron |
| TTCTAATGATGAAATTGTTA+AGG | 0.405378 | 8_3:+16521089 | Msa1279490:CDS |
| AGAAACACTGATGGAAGCTT+TGG | 0.407807 | 8_3:-16520870 | None:intergenic |
| GAACGAAAGGAGCCGGCATC+TGG | 0.411704 | 8_3:-16517251 | None:intergenic |
| CAGAGTAACGGCGAGATAAC+CGG | 0.412139 | 8_3:-16516797 | None:intergenic |
| GCTTCTAACAACTTGGGATT+GGG | 0.412784 | 8_3:-16518630 | None:intergenic |
| GTGATGTGTGAATTTGGGTT+TGG | 0.414086 | 8_3:-16516371 | None:intergenic |
| GATAATGATCCTGGTGTTAT+GGG | 0.418077 | 8_3:+16517099 | Msa1279490:CDS |
| GCTGAAAATTCTTGCATTGT+TGG | 0.418206 | 8_3:+16518476 | Msa1279490:CDS |
| CTAACAACAAGATCCTTATA+CGG | 0.419797 | 8_3:-16517168 | None:intergenic |
| CCGTTTAGGGATATCTGGTT+CGG | 0.424087 | 8_3:-16516656 | None:intergenic |
| AGCTTCTAACAACTTGGGAT+TGG | 0.425340 | 8_3:-16518631 | None:intergenic |
| GAGTAATCATTGGTTTATAC+AGG | 0.425577 | 8_3:+16520495 | Msa1279490:CDS |
| TCCACCACCGTAACCACCTC+CGG | 0.428280 | 8_3:+16516428 | Msa1279490:five_prime_UTR |
| TGGCACTTCATAGCTTTCAT+AGG | 0.434008 | 8_3:+16517022 | Msa1279490:CDS |
| ATGGGATCACAAGGCGCGTT+CGG | 0.435386 | 8_3:+16516523 | Msa1279490:CDS |
| AGTTGCTCCATTGGTTGTTA+CGG | 0.437859 | 8_3:-16516475 | None:intergenic |
| GGATCTGATCGGAGGGGTTG+TGG | 0.439297 | 8_3:-16516408 | None:intergenic |
| GATGCCGGCTCCTTTCGTTC+AGG | 0.441178 | 8_3:+16517254 | Msa1279490:CDS |
| TCATAGCTTTCATAGGAAAT+CGG | 0.442142 | 8_3:+16517029 | Msa1279490:CDS |
| CACACATCGAGAAGCTATAT+AGG | 0.442550 | 8_3:-16520449 | None:intergenic |
| AATTTGCACCGAGTAATCAT+TGG | 0.445556 | 8_3:+16520485 | Msa1279490:CDS |
| ATGGTTCCCGGAGGTGGTTA+CGG | 0.451475 | 8_3:-16516435 | None:intergenic |
| TTCGTTGATTAATCTACAAA+CGG | 0.451855 | 8_3:-16516920 | None:intergenic |
| ACTGATTACAGGTTATTTGT+TGG | 0.456488 | 8_3:+16520983 | Msa1279490:intron |
| TTTCGCTTCAAAGTATCGTC+AGG | 0.463858 | 8_3:-16520322 | None:intergenic |
| GGGGAATATGGCACAGCTGA+TGG | 0.467637 | 8_3:+16521012 | Msa1279490:CDS |
| AATCGTTAATACGATTCAAA+AGG | 0.468077 | 8_3:+16516852 | Msa1279490:CDS |
| CGATTTCACGGATTACGATT+CGG | 0.471806 | 8_3:-16516612 | None:intergenic |
| CCGGTGATGGTTCCCGGAGG+TGG | 0.472729 | 8_3:-16516441 | None:intergenic |
| ACAAGATCCTTATACGGAAT+CGG | 0.481699 | 8_3:-16517162 | None:intergenic |
| CCACCTCCGGGAACCATCAC+CGG | 0.487450 | 8_3:+16516441 | Msa1279490:five_prime_UTR |
| CCTAATTATATCGCCAATAA+CGG | 0.489566 | 8_3:-16518535 | None:intergenic |
| GGTGATTCATCAAGTAACAT+AGG | 0.492869 | 8_3:+16518561 | Msa1279490:CDS |
| CATTCCGCTTCCTATATCAC+TGG | 0.494068 | 8_3:+16521039 | Msa1279490:CDS |
| GGTTATTTGTTGGGTTCTTG+GGG | 0.494517 | 8_3:+16520993 | Msa1279490:intron |
| ATTCTTGCATTGTTGGGAAG+TGG | 0.495732 | 8_3:+16518483 | Msa1279490:CDS |
| CTCGACCTAATCAAATCAAT+CGG | 0.500422 | 8_3:+16516562 | Msa1279490:CDS |
| GTTGTTGAGCTTCTTTCGCA+TGG | 0.504811 | 8_3:+16516970 | Msa1279490:CDS |
| TCATAGGAAATCGGCGTCGT+CGG | 0.508697 | 8_3:+16517038 | Msa1279490:CDS |
| CGCATGGGAAAGAAGCGGTT+AGG | 0.511994 | 8_3:+16516986 | Msa1279490:CDS |
| TAGTCATAATCTGAAATACA+TGG | 0.515074 | 8_3:+16518806 | Msa1279490:CDS |
| CTCAACAACTAACGGCAAAA+CGG | 0.515966 | 8_3:-16516956 | None:intergenic |
| ATGGAGCAACTGAAAACAAT+CGG | 0.518330 | 8_3:+16516487 | Msa1279490:CDS |
| GAAAGAAGCGGTTAGGAAGA+AGG | 0.520105 | 8_3:+16516993 | Msa1279490:CDS |
| AATCGGCCGCGAACTCGCCA+TGG | 0.522408 | 8_3:+16516504 | Msa1279490:CDS |
| TTAAACAGGTAGCTGAACAT+AGG | 0.522822 | 8_3:+16517205 | Msa1279490:CDS |
| GTGATCCCATGGCGAGTTCG+CGG | 0.523154 | 8_3:-16516510 | None:intergenic |
| CCGAACCAGATATCCCTAAA+CGG | 0.536714 | 8_3:+16516656 | Msa1279490:CDS |
| TATTGGCGATATAATTAGGA+AGG | 0.540723 | 8_3:+16518539 | Msa1279490:CDS |
| GTTACGGTGGTGGATCTGAT+CGG | 0.542489 | 8_3:-16516419 | None:intergenic |
| AGGCGCGTTCGGTCAATCAA+AGG | 0.542680 | 8_3:+16516534 | Msa1279490:CDS |
| GTGATTCATCAAGTAACATA+GGG | 0.544692 | 8_3:+16518562 | Msa1279490:CDS |
| CGGTGGTGGATCTGATCGGA+GGG | 0.544803 | 8_3:-16516415 | None:intergenic |
| CTTCCCAGTGATATAGGAAG+CGG | 0.546539 | 8_3:-16521043 | None:intergenic |
| TGCTCCATTGGTTGTTACGG+AGG | 0.551475 | 8_3:-16516472 | None:intergenic |
| TTAATGCGGTTGATTGCAGA+AGG | 0.553103 | 8_3:+16520671 | Msa1279490:CDS |
| TTCATCATTAGAATATGCCT+CGG | 0.559232 | 8_3:-16521079 | None:intergenic |
| GGTTAGGAAGAAGGCGGTCA+TGG | 0.559851 | 8_3:+16517002 | Msa1279490:CDS |
| ATCGGCCGCGAACTCGCCAT+GGG | 0.561265 | 8_3:+16516505 | Msa1279490:CDS |
| ATCACCTGAACGAAAGGAGC+CGG | 0.561526 | 8_3:-16517258 | None:intergenic |
| TTGTTGAGCTTCTTTCGCAT+GGG | 0.561760 | 8_3:+16516971 | Msa1279490:CDS |
| GTCAACGATCACTTCCACAT+TGG | 0.561875 | 8_3:-16520380 | None:intergenic |
| CTTCTCTACGTTGAAATGCT+CGG | 0.563060 | 8_3:+16516703 | Msa1279490:CDS |
| CTATATAGCTTCTCGATGTG+TGG | 0.566142 | 8_3:+16520450 | Msa1279490:CDS |
| GGGTTTGGAGAGTGTGAAGG+TGG | 0.566574 | 8_3:-16516356 | None:intergenic |
| ATAACAATCACCTGAACGAA+AGG | 0.567560 | 8_3:-16517264 | None:intergenic |
| ACAACTAACGGCAAAACGGC+AGG | 0.571577 | 8_3:-16516952 | None:intergenic |
| CTTATACGGAATCGGATCAT+CGG | 0.581027 | 8_3:-16517154 | None:intergenic |
| CCACCACCGTAACCACCTCC+GGG | 0.582024 | 8_3:+16516429 | Msa1279490:five_prime_UTR |
| AAAACCTCCGTAACAACCAA+TGG | 0.582707 | 8_3:+16516468 | Msa1279490:exon |
| TGTATAAACCAATGATTACT+CGG | 0.587543 | 8_3:-16520493 | None:intergenic |
| GCAGCAGCTTCTAACAACTT+GGG | 0.588158 | 8_3:-16518636 | None:intergenic |
| AGATTGTGTGATAATGATCC+TGG | 0.589052 | 8_3:+16517090 | Msa1279490:CDS |
| GAACGCGCCTTGTGATCCCA+TGG | 0.589618 | 8_3:-16516521 | None:intergenic |
| TGATGTTGTTCTGCAATAAG+CGG | 0.590067 | 8_3:-16518864 | None:intergenic |
| ACGGTGGTGGATCTGATCGG+AGG | 0.590640 | 8_3:-16516416 | None:intergenic |
| TTTGGGTTTGGAGAGTGTGA+AGG | 0.593662 | 8_3:-16516359 | None:intergenic |
| AGTACCTGAAGAAACACTGA+TGG | 0.594329 | 8_3:-16520879 | None:intergenic |
| TGATCATGTACTCAATCATA+CGG | 0.597576 | 8_3:-16520402 | None:intergenic |
| TACCTCTAAGCAGTCAATGA+CGG | 0.597831 | 8_3:-16518892 | None:intergenic |
| AATCTTCTCTCAAAACGCAC+CGG | 0.598198 | 8_3:+16516778 | Msa1279490:CDS |
| GATTGCAGAAGGATTTGGAG+AGG | 0.602461 | 8_3:+16520682 | Msa1279490:CDS |
| TGAGATCGTGATCGTCGTTG+AGG | 0.604788 | 8_3:-16516822 | None:intergenic |
| CTATGATTATCACCAGATGC+CGG | 0.613011 | 8_3:+16517239 | Msa1279490:CDS |
| TATGGAAGAGACACAGCGAA+TGG | 0.616828 | 8_3:-16518604 | None:intergenic |
| ATTCCGCTTCCTATATCACT+GGG | 0.617876 | 8_3:+16521040 | Msa1279490:CDS |
| GAACTCGCCATGGGATCACA+AGG | 0.618854 | 8_3:+16516514 | Msa1279490:CDS |
| CAAGTTGTTAGAAGCTGCTG+CGG | 0.622141 | 8_3:+16518638 | Msa1279490:CDS |
| GTAAACGACGTCGTGTACGA+CGG | 0.623284 | 8_3:-16516319 | None:intergenic |
| GTTCCCGGAGGTGGTTACGG+TGG | 0.625369 | 8_3:-16516432 | None:intergenic |
| GTCGTTGAGGAACAGAGTAA+CGG | 0.628932 | 8_3:-16516809 | None:intergenic |
| GAAAGAAGCTCAACAACTAA+CGG | 0.631117 | 8_3:-16516964 | None:intergenic |
| ATTGGCGATATAATTAGGAA+GGG | 0.632401 | 8_3:+16518540 | Msa1279490:CDS |
| CGATCTCAGCTGACTATATG+CGG | 0.636229 | 8_3:-16520714 | None:intergenic |
| GAAGTTATGCGATATGGCCG+AGG | 0.636501 | 8_3:+16521062 | Msa1279490:CDS |
| GTCGTCGGTTTCGCATCTTG+TGG | 0.638713 | 8_3:+16517053 | Msa1279490:CDS |
| AGTCATAATCTGAAATACAT+GGG | 0.639996 | 8_3:+16518807 | Msa1279490:CDS |
| AGGTTGCACATAATTTAATG+CGG | 0.654401 | 8_3:+16520657 | Msa1279490:CDS |
| TCTTTCGCATGGGAAAGAAG+CGG | 0.658045 | 8_3:+16516981 | Msa1279490:CDS |
| AGAGTAGCACCCATAACACC+AGG | 0.658462 | 8_3:-16517108 | None:intergenic |
| TACATGGGTATTGATGCTCT+CGG | 0.662992 | 8_3:+16518822 | Msa1279490:CDS |
| TAAGTGCAGCACAAACGACA+AGG | 0.667985 | 8_3:-16516894 | None:intergenic |
| AATGACCAAGTCTTCCAATG+TGG | 0.681347 | 8_3:+16520366 | Msa1279490:CDS |
| GGTGGTGGATCTGATCGGAG+GGG | 0.702003 | 8_3:-16516414 | None:intergenic |
| GATCCGGTGATGGTTCCCGG+AGG | 0.734675 | 8_3:-16516444 | None:intergenic |
| TCGGTTATAAGATCAAACAA+CGG | 0.756868 | 8_3:-16517135 | None:intergenic |
| AGAAGCGGTTAGGAAGAAGG+CGG | 0.763685 | 8_3:+16516996 | Msa1279490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATATATTATAAAAA+AGG | + | chr8_3:16519363-16519382 | Msa1279490:intron | 0.0% |
| !!! | TATATATCATTTTTACATAA+GGG | - | chr8_3:16519205-16519224 | None:intergenic | 10.0% |
| !!! | ATATATATCATTTTTACATA+AGG | - | chr8_3:16519206-16519225 | None:intergenic | 10.0% |
| !!! | ATATATTATAAAAAAGGTTT+TGG | + | chr8_3:16519369-16519388 | Msa1279490:intron | 10.0% |
| !!! | TATATTATAAAAAAGGTTTT+GGG | + | chr8_3:16519370-16519389 | Msa1279490:intron | 10.0% |
| !!! | AAATTTTATATACAAAAACA+GGG | - | chr8_3:16519853-16519872 | None:intergenic | 10.0% |
| !!! | AAAATTTTATATACAAAAAC+AGG | - | chr8_3:16519854-16519873 | None:intergenic | 10.0% |
| !!! | CAAATAAAAATCTAATTTTT+TGG | + | chr8_3:16520287-16520306 | Msa1279490:intron | 10.0% |
| !!! | TTTGAATAGAATTATTGATT+TGG | + | chr8_3:16517496-16517515 | Msa1279490:intron | 15.0% |
| !!! | ATTTTAACTAATTATAGACT+TGG | - | chr8_3:16517608-16517627 | None:intergenic | 15.0% |
| !!! | ATTTTGGAAAAGTTAAATTA+TGG | + | chr8_3:16518019-16518038 | Msa1279490:intron | 15.0% |
| !!! | ATCAATATTATTTTTTTTCC+TGG | + | chr8_3:16518293-16518312 | Msa1279490:intron | 15.0% |
| !! | AAAAAAACCAAAACATAAAT+TGG | - | chr8_3:16518970-16518989 | None:intergenic | 15.0% |
| !! | TTAAACTAATATCGTATAAT+AGG | - | chr8_3:16519237-16519256 | None:intergenic | 15.0% |
| !! | GACAAAAAATGAAATTTATA+TGG | + | chr8_3:16519771-16519790 | Msa1279490:intron | 15.0% |
| !!! | TAAAAATCTAATTTTTTGGA+TGG | + | chr8_3:16520291-16520310 | Msa1279490:intron | 15.0% |
| !!! | TTTTGTTAGTATTCTTAAAC+AGG | + | chr8_3:16517191-16517210 | Msa1279490:CDS | 20.0% |
| !!! | AGTTAGTTTTAGTTTTGATT+TGG | + | chr8_3:16517289-16517308 | Msa1279490:intron | 20.0% |
| !!! | GTTTTTGAATAGAATTGATT+TGG | + | chr8_3:16518120-16518139 | Msa1279490:intron | 20.0% |
| !! | TCATAGTCAAATTAAGATTT+GGG | + | chr8_3:16518265-16518284 | Msa1279490:intron | 20.0% |
| !!! | TTAAAATTGCTTCTTATTTG+AGG | + | chr8_3:16518423-16518442 | Msa1279490:intron | 20.0% |
| !! | AATAATATATCTGTTTGTAC+CGG | - | chr8_3:16519341-16519360 | None:intergenic | 20.0% |
| !!! | TATTTTATAATGTAGTTGCA+GGG | - | chr8_3:16519928-16519947 | None:intergenic | 20.0% |
| !!! | ATATTTTATAATGTAGTTGC+AGG | - | chr8_3:16519929-16519948 | None:intergenic | 20.0% |
| !!! | AATTAAGATCTTTTTCTGTA+TGG | + | chr8_3:16520519-16520538 | Msa1279490:intron | 20.0% |
| !! | TTCTAATGATGAAATTGTTA+AGG | + | chr8_3:16521089-16521108 | Msa1279490:CDS | 20.0% |
| ! | AATCGTTAATACGATTCAAA+AGG | + | chr8_3:16516852-16516871 | Msa1279490:CDS | 25.0% |
| !! | TTCGTTGATTAATCTACAAA+CGG | - | chr8_3:16516923-16516942 | None:intergenic | 25.0% |
| ! | TTATAAAATGTAGAACCGAT+CGG | + | chr8_3:16517347-16517366 | Msa1279490:intron | 25.0% |
| ! | AGTTAAAATGTAGAACCAAT+CGG | + | chr8_3:16517619-16517638 | Msa1279490:intron | 25.0% |
| !! | TTTTGGCAAAATCTACATTT+TGG | + | chr8_3:16517734-16517753 | Msa1279490:intron | 25.0% |
| !! | GTTTTTGAATAGACTTGATT+TGG | + | chr8_3:16517855-16517874 | Msa1279490:intron | 25.0% |
| !!! | TTAGATGTTTTTACCATGAA+AGG | + | chr8_3:16517911-16517930 | Msa1279490:intron | 25.0% |
| !! | TAGAACCAATAGTTATGTTT+TGG | + | chr8_3:16517964-16517983 | Msa1279490:intron | 25.0% |
| ! | GTCATAGTCAAATTAAGATT+TGG | + | chr8_3:16518264-16518283 | Msa1279490:intron | 25.0% |
| !! | GTTTTCACATAAATTACACT+TGG | + | chr8_3:16518333-16518352 | Msa1279490:intron | 25.0% |
| !!! | TTCTGTTAATTGTTTTACAG+TGG | - | chr8_3:16518387-16518406 | None:intergenic | 25.0% |
| ! | AAAACAAACCTTCAAAAACT+TGG | - | chr8_3:16518673-16518692 | None:intergenic | 25.0% |
| !! | TAGTCATAATCTGAAATACA+TGG | + | chr8_3:16518806-16518825 | Msa1279490:CDS | 25.0% |
| !! | AGTCATAATCTGAAATACAT+GGG | + | chr8_3:16518807-16518826 | Msa1279490:CDS | 25.0% |
| !! | TGCATTACCAATTTATGTTT+TGG | + | chr8_3:16518960-16518979 | Msa1279490:intron | 25.0% |
| ! | TAGTAAGGAAAGATTGTTAA+AGG | + | chr8_3:16519059-16519078 | Msa1279490:intron | 25.0% |
| ! | GTTAAAGGAAAGAAAGTAAA+AGG | + | chr8_3:16519074-16519093 | Msa1279490:intron | 25.0% |
| !!! | TTATTTGCCATAGTTTTTTC+CGG | + | chr8_3:16519319-16519338 | Msa1279490:intron | 25.0% |
| ! | TCAAACATAAACACATTGTT+TGG | - | chr8_3:16519594-16519613 | None:intergenic | 25.0% |
| !! | CTTTTCATTATCCTCATTAT+AGG | - | chr8_3:16519680-16519699 | None:intergenic | 25.0% |
| ! | TTTAGACTTGTAACTAGTAA+TGG | + | chr8_3:16519878-16519897 | Msa1279490:intron | 25.0% |
| ! | CTCACTTAATAGGTAATAAT+TGG | - | chr8_3:16520141-16520160 | None:intergenic | 25.0% |
| ! | TGTATAAACCAATGATTACT+CGG | - | chr8_3:16520496-16520515 | None:intergenic | 25.0% |
| ! | ATGCTCAAAAACTTTATTCA+TGG | - | chr8_3:16520615-16520634 | None:intergenic | 25.0% |
| !!! | TAATCTTTAGTACTGATTAC+AGG | + | chr8_3:16520972-16520991 | Msa1279490:intron | 25.0% |
| TGAATGTGATGTGTGAATTT+GGG | - | chr8_3:16516379-16516398 | None:intergenic | 30.0% | |
| ATGAATGTGATGTGTGAATT+TGG | - | chr8_3:16516380-16516399 | None:intergenic | 30.0% | |
| !! | ATTCACCGATTGATTTGATT+AGG | - | chr8_3:16516570-16516589 | None:intergenic | 30.0% |
| !! | ATCATCGTGAGTCATTTTAA+CGG | - | chr8_3:16516758-16516777 | None:intergenic | 30.0% |
| TCATAGCTTTCATAGGAAAT+CGG | + | chr8_3:16517029-16517048 | Msa1279490:CDS | 30.0% | |
| TCGGTTATAAGATCAAACAA+CGG | - | chr8_3:16517138-16517157 | None:intergenic | 30.0% | |
| CTAACAACAAGATCCTTATA+CGG | - | chr8_3:16517171-16517190 | None:intergenic | 30.0% | |
| ! | TTTTGTCAGAAACTACACTT+TGG | + | chr8_3:16517413-16517432 | Msa1279490:intron | 30.0% |
| ! | TTCATGCATGTTTGGAATAA+TGG | - | chr8_3:16517464-16517483 | None:intergenic | 30.0% |
| TTTGGTTAGAATTGAGTTTG+AGG | + | chr8_3:16517514-16517533 | Msa1279490:intron | 30.0% | |
| ATTACTACTAAGTGCATGTT+TGG | + | chr8_3:16517670-16517689 | Msa1279490:intron | 30.0% | |
| TAAGTGCATGTTTGGATTAA+CGG | + | chr8_3:16517678-16517697 | Msa1279490:intron | 30.0% | |
| TGATGAGTTTGACAAAATCA+CGG | - | chr8_3:16517784-16517803 | None:intergenic | 30.0% | |
| TCAAGTCTATTCAAAAACCA+TGG | - | chr8_3:16517853-16517872 | None:intergenic | 30.0% | |
| CTAAATCAAACTTCCTTTCA+TGG | - | chr8_3:16517927-16517946 | None:intergenic | 30.0% | |
| ACTCACCAAAACATAACTAT+TGG | - | chr8_3:16517972-16517991 | None:intergenic | 30.0% | |
| ACTATGACTAGAGACATAAA+AGG | - | chr8_3:16518252-16518271 | None:intergenic | 30.0% | |
| TGTAATTTATGTGAAAACCC+AGG | - | chr8_3:16518331-16518350 | None:intergenic | 30.0% | |
| CTGAAAATTCTTGCATTGTT+GGG | + | chr8_3:16518477-16518496 | Msa1279490:CDS | 30.0% | |
| CCTAATTATATCGCCAATAA+CGG | - | chr8_3:16518538-16518557 | None:intergenic | 30.0% | |
| TATTGGCGATATAATTAGGA+AGG | + | chr8_3:16518539-16518558 | Msa1279490:CDS | 30.0% | |
| ATTGGCGATATAATTAGGAA+GGG | + | chr8_3:16518540-16518559 | Msa1279490:CDS | 30.0% | |
| GTGATTCATCAAGTAACATA+GGG | + | chr8_3:16518562-16518581 | Msa1279490:CDS | 30.0% | |
| ! | GTTGTACATGTTTTTCCATT+AGG | + | chr8_3:16518728-16518747 | Msa1279490:intron | 30.0% |
| AAGTGAAAGGAAAGATAGTA+AGG | + | chr8_3:16519044-16519063 | Msa1279490:intron | 30.0% | |
| ! | AGAAAGTGAGAGAATTTTGA+TGG | + | chr8_3:16519106-16519125 | Msa1279490:intron | 30.0% |
| !! | AGAGAATTTTGATGGTTGTT+TGG | + | chr8_3:16519114-16519133 | Msa1279490:intron | 30.0% |
| GAAAGTGAATAGAAAGTGAA+AGG | + | chr8_3:16519144-16519163 | Msa1279490:intron | 30.0% | |
| TAAAAACTTTCTTTCCTGCT+AGG | + | chr8_3:16519546-16519565 | Msa1279490:intron | 30.0% | |
| TTCCTTTAGTGTATGTTCTA+TGG | + | chr8_3:16519636-16519655 | Msa1279490:intron | 30.0% | |
| TTCCATAGAACATACACTAA+AGG | - | chr8_3:16519641-16519660 | None:intergenic | 30.0% | |
| AATGATTAAACGCAAAGTAG+TGG | - | chr8_3:16520171-16520190 | None:intergenic | 30.0% | |
| TTATTTGTACTGCAAAGCTT+GGG | - | chr8_3:16520274-16520293 | None:intergenic | 30.0% | |
| TTTATTTGTACTGCAAAGCT+TGG | - | chr8_3:16520275-16520294 | None:intergenic | 30.0% | |
| TGATCATGTACTCAATCATA+CGG | - | chr8_3:16520405-16520424 | None:intergenic | 30.0% | |
| !! | GAGTAATCATTGGTTTATAC+AGG | + | chr8_3:16520495-16520514 | Msa1279490:CDS | 30.0% |
| !! | AATAAAGTTTTTGAGCATGC+TGG | + | chr8_3:16520617-16520636 | Msa1279490:CDS | 30.0% |
| TGGAGATCTTGTGAATATTA+AGG | + | chr8_3:16520637-16520656 | Msa1279490:CDS | 30.0% | |
| AGGTTGCACATAATTTAATG+CGG | + | chr8_3:16520657-16520676 | Msa1279490:CDS | 30.0% | |
| GGGAAACTATAAAACTTAAG+TGG | - | chr8_3:16520912-16520931 | None:intergenic | 30.0% | |
| TTCTTGGAAAGTAAAGAAGT+GGG | - | chr8_3:16520932-16520951 | None:intergenic | 30.0% | |
| TTTCTTGGAAAGTAAAGAAG+TGG | - | chr8_3:16520933-16520952 | None:intergenic | 30.0% | |
| ACTTTCCAAGAAATTAGATC+TGG | + | chr8_3:16520940-16520959 | Msa1279490:intron | 30.0% | |
| ACAAACCAGATCTAATTTCT+TGG | - | chr8_3:16520948-16520967 | None:intergenic | 30.0% | |
| ACTGATTACAGGTTATTTGT+TGG | + | chr8_3:16520983-16521002 | Msa1279490:intron | 30.0% | |
| CTGATTACAGGTTATTTGTT+GGG | + | chr8_3:16520984-16521003 | Msa1279490:intron | 30.0% | |
| TTCATCATTAGAATATGCCT+CGG | - | chr8_3:16521082-16521101 | None:intergenic | 30.0% | |
| ! | ATTGTTTTCAGTTGCTCCAT+TGG | - | chr8_3:16516487-16516506 | None:intergenic | 35.0% |
| ATGGAGCAACTGAAAACAAT+CGG | + | chr8_3:16516487-16516506 | Msa1279490:CDS | 35.0% | |
| CTCGACCTAATCAAATCAAT+CGG | + | chr8_3:16516562-16516581 | Msa1279490:CDS | 35.0% | |
| !!! | GTTTTAGGGTTTCGATTTCA+CGG | - | chr8_3:16516627-16516646 | None:intergenic | 35.0% |
| ACTCTTTCATCTTCCGTTTA+GGG | - | chr8_3:16516672-16516691 | None:intergenic | 35.0% | |
| TACTCTTTCATCTTCCGTTT+AGG | - | chr8_3:16516673-16516692 | None:intergenic | 35.0% | |
| GAAAGAAGCTCAACAACTAA+CGG | - | chr8_3:16516967-16516986 | None:intergenic | 35.0% | |
| ! | AGATTGTGTGATAATGATCC+TGG | + | chr8_3:16517090-16517109 | Msa1279490:CDS | 35.0% |
| ! | TGATAATGATCCTGGTGTTA+TGG | + | chr8_3:16517098-16517117 | Msa1279490:CDS | 35.0% |
| !! | GATAATGATCCTGGTGTTAT+GGG | + | chr8_3:16517099-16517118 | Msa1279490:CDS | 35.0% |
| ACAAGATCCTTATACGGAAT+CGG | - | chr8_3:16517165-16517184 | None:intergenic | 35.0% | |
| TTAAACAGGTAGCTGAACAT+AGG | + | chr8_3:16517205-16517224 | Msa1279490:CDS | 35.0% | |
| TGGTGATAATCATAGCTCTT+AGG | - | chr8_3:16517234-16517253 | None:intergenic | 35.0% | |
| ATAACAATCACCTGAACGAA+AGG | - | chr8_3:16517267-16517286 | None:intergenic | 35.0% | |
| !!! | GTATGTTTTGGTGAGTTTAG+CGG | + | chr8_3:16517369-16517388 | Msa1279490:intron | 35.0% |
| ! | GTTTGGAATAATGGTGAGTT+CGG | - | chr8_3:16517455-16517474 | None:intergenic | 35.0% |
| CACTTAGTAGTAATCACGTA+TGG | - | chr8_3:16517664-16517683 | None:intergenic | 35.0% | |
| AAACACACTTGATGCATGTT+TGG | - | chr8_3:16517812-16517831 | None:intergenic | 35.0% | |
| AAACATGCATCAAGTGTGTT+TGG | + | chr8_3:16517811-16517830 | Msa1279490:intron | 35.0% | |
| TCCAAAATCAAATCGACACA+CGG | - | chr8_3:16518007-16518026 | None:intergenic | 35.0% | |
| AAACACACATAGTGTGTGTT+TGG | - | chr8_3:16518078-16518097 | None:intergenic | 35.0% | |
| AAACACACACTATGTGTGTT+TGG | + | chr8_3:16518077-16518096 | Msa1279490:intron | 35.0% | |
| CATAAATTACACTTGGCAGA+AGG | + | chr8_3:16518340-16518359 | Msa1279490:intron | 35.0% | |
| GCTGAAAATTCTTGCATTGT+TGG | + | chr8_3:16518476-16518495 | Msa1279490:CDS | 35.0% | |
| CCGTTATTGGCGATATAATT+AGG | + | chr8_3:16518535-16518554 | Msa1279490:CDS | 35.0% | |
| GGTGATTCATCAAGTAACAT+AGG | + | chr8_3:16518561-16518580 | Msa1279490:CDS | 35.0% | |
| ! | TGTGATTGCCAAGTTTTTGA+AGG | + | chr8_3:16518662-16518681 | Msa1279490:CDS | 35.0% |
| TCAGATTATGACTATCACTC+TGG | - | chr8_3:16518800-16518819 | None:intergenic | 35.0% | |
| TGATGTTGTTCTGCAATAAG+CGG | - | chr8_3:16518867-16518886 | None:intergenic | 35.0% | |
| ATTGTGTGTTTCTTTCCCTT+TGG | + | chr8_3:16519000-16519019 | Msa1279490:intron | 35.0% | |
| GGATGAGAAAAGAAAGTGAA+AGG | + | chr8_3:16519031-16519050 | Msa1279490:intron | 35.0% | |
| GTTTGTACCGGAAAAAACTA+TGG | - | chr8_3:16519329-16519348 | None:intergenic | 35.0% | |
| TGCAATCTTTCTCTCCAATT+TGG | + | chr8_3:16519424-16519443 | Msa1279490:intron | 35.0% | |
| TCTTTCAATCCTCTCCAAAT+TGG | - | chr8_3:16519441-16519460 | None:intergenic | 35.0% | |
| AATTTGGAGAGGATTGAAAG+AGG | + | chr8_3:16519440-16519459 | Msa1279490:intron | 35.0% | |
| !!! | AAGAGGATTACTTTTTGTCG+TGG | + | chr8_3:16519457-16519476 | Msa1279490:intron | 35.0% |
| !!! | AGAGGATTACTTTTTGTCGT+GGG | + | chr8_3:16519458-16519477 | Msa1279490:intron | 35.0% |
| AAGGAAAGAAGCTTTCTCAT+GGG | - | chr8_3:16519485-16519504 | None:intergenic | 35.0% | |
| !! | GTTTGGGTTGATTATGAACA+GGG | - | chr8_3:16519508-16519527 | None:intergenic | 35.0% |
| ATTGTGTGCTTTCATCGTTT+GGG | - | chr8_3:16519524-16519543 | None:intergenic | 35.0% | |
| AATTGTGTGCTTTCATCGTT+TGG | - | chr8_3:16519525-16519544 | None:intergenic | 35.0% | |
| ACTCGTAACTACCTATAATG+AGG | + | chr8_3:16519666-16519685 | Msa1279490:intron | 35.0% | |
| AGACTTGTAACTAGTAATGG+AGG | + | chr8_3:16519881-16519900 | Msa1279490:intron | 35.0% | |
| ATGCATCCAGACAATGATAT+TGG | - | chr8_3:16520027-16520046 | None:intergenic | 35.0% | |
| GTCTTTCAGTCTTTCTAGAT+TGG | - | chr8_3:16520068-16520087 | None:intergenic | 35.0% | |
| TGGCATGTTTCTCACTTAAT+AGG | - | chr8_3:16520151-16520170 | None:intergenic | 35.0% | |
| !!! | TCTAATTTTTTGGATGGTGC+AGG | + | chr8_3:16520297-16520316 | Msa1279490:intron | 35.0% |
| AATTTGCACCGAGTAATCAT+TGG | + | chr8_3:16520485-16520504 | Msa1279490:CDS | 35.0% | |
| ! | GATCTTTTTCTGTATGGTCT+TGG | + | chr8_3:16520525-16520544 | Msa1279490:intron | 35.0% |
| GGTCTGTATAATCAAGTACA+AGG | - | chr8_3:16520594-16520613 | None:intergenic | 35.0% | |
| GATACTAGCTCCTGTTTATT+TGG | + | chr8_3:16520755-16520774 | Msa1279490:intron | 35.0% | |
| TAGAGACGTACCAAATAAAC+AGG | - | chr8_3:16520768-16520787 | None:intergenic | 35.0% | |
| GAGTCATATTTGCGCATTAT+TGG | + | chr8_3:16520843-16520862 | Msa1279490:CDS | 35.0% | |
| ! | AGGTTATTTGTTGGGTTCTT+GGG | + | chr8_3:16520992-16521011 | Msa1279490:intron | 35.0% |
| ! | GTGATGTGTGAATTTGGGTT+TGG | - | chr8_3:16516374-16516393 | None:intergenic | 40.0% |
| ! | ATTGGTTGTTACGGAGGTTT+TGG | - | chr8_3:16516469-16516488 | None:intergenic | 40.0% |
| AAAACCTCCGTAACAACCAA+TGG | + | chr8_3:16516468-16516487 | Msa1279490:exon | 40.0% | |
| ! | AGTTGCTCCATTGGTTGTTA+CGG | - | chr8_3:16516478-16516497 | None:intergenic | 40.0% |
| !! | GATTACGATTCGGTCTTCTT+CGG | - | chr8_3:16516605-16516624 | None:intergenic | 40.0% |
| ! | CGATTTCACGGATTACGATT+CGG | - | chr8_3:16516615-16516634 | None:intergenic | 40.0% |
| ATCTTCCGTTTAGGGATATC+TGG | - | chr8_3:16516664-16516683 | None:intergenic | 40.0% | |
| CTTCTCTACGTTGAAATGCT+CGG | + | chr8_3:16516703-16516722 | Msa1279490:CDS | 40.0% | |
| AATCTTCTCTCAAAACGCAC+CGG | + | chr8_3:16516778-16516797 | Msa1279490:CDS | 40.0% | |
| CTCAACAACTAACGGCAAAA+CGG | - | chr8_3:16516959-16516978 | None:intergenic | 40.0% | |
| TTGTTGAGCTTCTTTCGCAT+GGG | + | chr8_3:16516971-16516990 | Msa1279490:CDS | 40.0% | |
| TGGCACTTCATAGCTTTCAT+AGG | + | chr8_3:16517022-16517041 | Msa1279490:CDS | 40.0% | |
| CTTATACGGAATCGGATCAT+CGG | - | chr8_3:16517157-16517176 | None:intergenic | 40.0% | |
| CTATGATTATCACCAGATGC+CGG | + | chr8_3:16517239-16517258 | Msa1279490:CDS | 40.0% | |
| ! | TAGAACCGATCGGTATGTTT+TGG | + | chr8_3:16517357-16517376 | Msa1279490:intron | 40.0% |
| ACTCACCAAAACATACCGAT+CGG | - | chr8_3:16517365-16517384 | None:intergenic | 40.0% | |
| GTTTGGATTAACGGTGAGTT+TGG | + | chr8_3:16517687-16517706 | Msa1279490:intron | 40.0% | |
| AGTTTGGCAGAATCATAGTG+TGG | + | chr8_3:16517703-16517722 | Msa1279490:intron | 40.0% | |
| TGAGTTTGACAAAATCACGG+TGG | - | chr8_3:16517781-16517800 | None:intergenic | 40.0% | |
| TCAAGTGTGTTTGGATGAGT+TGG | + | chr8_3:16517820-16517839 | Msa1279490:intron | 40.0% | |
| !!! | ACCGTGTGTCGATTTGATTT+TGG | + | chr8_3:16518003-16518022 | Msa1279490:intron | 40.0% |
| GGATGAGTGCTTGATAAACA+TGG | + | chr8_3:16518098-16518117 | Msa1279490:intron | 40.0% | |
| TCCTGGTAGAAATAAACACC+TGG | + | chr8_3:16518310-16518329 | Msa1279490:intron | 40.0% | |
| CCTGGTAGAAATAAACACCT+GGG | + | chr8_3:16518311-16518330 | Msa1279490:intron | 40.0% | |
| ATTCTTGCATTGTTGGGAAG+TGG | + | chr8_3:16518483-16518502 | Msa1279490:CDS | 40.0% | |
| GAACACATGTACACCGTTAT+TGG | + | chr8_3:16518522-16518541 | Msa1279490:CDS | 40.0% | |
| CAACTTGGGATTGGGATATA+TGG | - | chr8_3:16518625-16518644 | None:intergenic | 40.0% | |
| GCTTCTAACAACTTGGGATT+GGG | - | chr8_3:16518633-16518652 | None:intergenic | 40.0% | |
| AGCTTCTAACAACTTGGGAT+TGG | - | chr8_3:16518634-16518653 | None:intergenic | 40.0% | |
| TTGTCTCTGTTGTGTTTGTG+TGG | + | chr8_3:16518774-16518793 | Msa1279490:intron | 40.0% | |
| !! | TACATGGGTATTGATGCTCT+CGG | + | chr8_3:16518822-16518841 | Msa1279490:CDS | 40.0% |
| TACCTCTAAGCAGTCAATGA+CGG | - | chr8_3:16518895-16518914 | None:intergenic | 40.0% | |
| ! | TCATTGACTGCTTAGAGGTA+AGG | + | chr8_3:16518895-16518914 | Msa1279490:intron | 40.0% |
| !! | TCTTTCCCTTTGGCTTTGTT+TGG | + | chr8_3:16519010-16519029 | Msa1279490:intron | 40.0% |
| CTCATCCAAACAAAGCCAAA+GGG | - | chr8_3:16519018-16519037 | None:intergenic | 40.0% | |
| TCTCATCCAAACAAAGCCAA+AGG | - | chr8_3:16519019-16519038 | None:intergenic | 40.0% | |
| TCTTTCTCTCCAATTTGGAG+AGG | + | chr8_3:16519429-16519448 | Msa1279490:intron | 40.0% | |
| GAAGGAAAGAAGCTTTCTCA+TGG | - | chr8_3:16519486-16519505 | None:intergenic | 40.0% | |
| !! | CGTTTGGGTTGATTATGAAC+AGG | - | chr8_3:16519509-16519528 | None:intergenic | 40.0% |
| ! | TTGTTTGGAACAGCAGAATG+TGG | - | chr8_3:16519579-16519598 | None:intergenic | 40.0% |
| ! | TTGTAACTAGTAATGGAGGC+CGG | + | chr8_3:16519885-16519904 | Msa1279490:intron | 40.0% |
| CATTCTCTTGCTGAACTTGT+TGG | - | chr8_3:16519963-16519982 | None:intergenic | 40.0% | |
| ! | GCAGGTTTTCAAACTCAAGA+CGG | - | chr8_3:16520005-16520024 | None:intergenic | 40.0% |
| AACCTGCCAATATCATTGTC+TGG | + | chr8_3:16520018-16520037 | Msa1279490:intron | 40.0% | |
| ATCCAGACAATGATATTGGC+AGG | - | chr8_3:16520023-16520042 | None:intergenic | 40.0% | |
| ATGTTTCTCACAGTCAGACT+AGG | - | chr8_3:16520117-16520136 | None:intergenic | 40.0% | |
| !! | TTTCGCTTCAAAGTATCGTC+AGG | - | chr8_3:16520325-16520344 | None:intergenic | 40.0% |
| AATGACCAAGTCTTCCAATG+TGG | + | chr8_3:16520366-16520385 | Msa1279490:CDS | 40.0% | |
| CACACATCGAGAAGCTATAT+AGG | - | chr8_3:16520452-16520471 | None:intergenic | 40.0% | |
| CTATATAGCTTCTCGATGTG+TGG | + | chr8_3:16520450-16520469 | Msa1279490:CDS | 40.0% | |
| TTAATGCGGTTGATTGCAGA+AGG | + | chr8_3:16520671-16520690 | Msa1279490:CDS | 40.0% | |
| GTCACATGCATATTACTGAG+TGG | + | chr8_3:16520796-16520815 | Msa1279490:intron | 40.0% | |
| AGAAACACTGATGGAAGCTT+TGG | - | chr8_3:16520873-16520892 | None:intergenic | 40.0% | |
| AGTACCTGAAGAAACACTGA+TGG | - | chr8_3:16520882-16520901 | None:intergenic | 40.0% | |
| ! | CAGGTTATTTGTTGGGTTCT+TGG | + | chr8_3:16520991-16521010 | Msa1279490:intron | 40.0% |
| ! | GGTTATTTGTTGGGTTCTTG+GGG | + | chr8_3:16520993-16521012 | Msa1279490:intron | 40.0% |
| ATTCCGCTTCCTATATCACT+GGG | + | chr8_3:16521040-16521059 | Msa1279490:CDS | 40.0% | |
| GCATAACTTCCCAGTGATAT+AGG | - | chr8_3:16521052-16521071 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTGGAGAGTGTGA+AGG | - | chr8_3:16516362-16516381 | None:intergenic | 45.0% |
| !!! | TGTTACGGAGGTTTTGGATC+CGG | - | chr8_3:16516463-16516482 | None:intergenic | 45.0% |
| ! | TTCGGAGATTCGGCGTTTTA+GGG | - | chr8_3:16516641-16516660 | None:intergenic | 45.0% |
| !! | GGATATCTGGTTCGGAGATT+CGG | - | chr8_3:16516651-16516670 | None:intergenic | 45.0% |
| CCGTTTAGGGATATCTGGTT+CGG | - | chr8_3:16516659-16516678 | None:intergenic | 45.0% | |
| CCGAACCAGATATCCCTAAA+CGG | + | chr8_3:16516656-16516675 | Msa1279490:CDS | 45.0% | |
| GTCGTTGAGGAACAGAGTAA+CGG | - | chr8_3:16516812-16516831 | None:intergenic | 45.0% | |
| TAAGTGCAGCACAAACGACA+AGG | - | chr8_3:16516897-16516916 | None:intergenic | 45.0% | |
| GTTGTTGAGCTTCTTTCGCA+TGG | + | chr8_3:16516970-16516989 | Msa1279490:CDS | 45.0% | |
| TCTTTCGCATGGGAAAGAAG+CGG | + | chr8_3:16516981-16517000 | Msa1279490:CDS | 45.0% | |
| GAAAGAAGCGGTTAGGAAGA+AGG | + | chr8_3:16516993-16517012 | Msa1279490:CDS | 45.0% | |
| ! | CGCATCTTGTGGCGAATTTT+AGG | + | chr8_3:16517064-16517083 | Msa1279490:CDS | 45.0% |
| CGATGATCCGATTCCGTATA+AGG | + | chr8_3:16517155-16517174 | Msa1279490:CDS | 45.0% | |
| TGGTGAGTTTAGCGGAATCA+CGG | + | chr8_3:16517377-16517396 | Msa1279490:intron | 45.0% | |
| GCACACACTTCATGCATGTT+TGG | - | chr8_3:16517472-16517491 | None:intergenic | 45.0% | |
| CAGAATCATAGTGTGGCAGT+GGG | + | chr8_3:16517710-16517729 | Msa1279490:intron | 45.0% | |
| ! | ATAGTGTGGCAGTGGGATTT+TGG | + | chr8_3:16517717-16517736 | Msa1279490:intron | 45.0% |
| ! | GTGTGTTTGGATGAGTTGGA+TGG | + | chr8_3:16517824-16517843 | Msa1279490:intron | 45.0% |
| !! | CCCAGGTGTTTATTTCTACC+AGG | - | chr8_3:16518314-16518333 | None:intergenic | 45.0% |
| TATGGAAGAGACACAGCGAA+TGG | - | chr8_3:16518607-16518626 | None:intergenic | 45.0% | |
| GCAGCAGCTTCTAACAACTT+GGG | - | chr8_3:16518639-16518658 | None:intergenic | 45.0% | |
| CAAGTTGTTAGAAGCTGCTG+CGG | + | chr8_3:16518638-16518657 | Msa1279490:CDS | 45.0% | |
| CACATCACAACACAGCCTAA+TGG | - | chr8_3:16518746-16518765 | None:intergenic | 45.0% | |
| ! | GGGTTGATTATGAACAGGGA+AGG | - | chr8_3:16519504-16519523 | None:intergenic | 45.0% |
| TTGGAACAGCAGAATGTGGA+AGG | - | chr8_3:16519575-16519594 | None:intergenic | 45.0% | |
| CTCACAGTCAGACTAGGTAA+AGG | - | chr8_3:16520111-16520130 | None:intergenic | 45.0% | |
| CACTTCCACATTGGAAGACT+TGG | - | chr8_3:16520374-16520393 | None:intergenic | 45.0% | |
| GTCAACGATCACTTCCACAT+TGG | - | chr8_3:16520383-16520402 | None:intergenic | 45.0% | |
| CGGTTGATTGCAGAAGGATT+TGG | + | chr8_3:16520677-16520696 | Msa1279490:CDS | 45.0% | |
| GATTGCAGAAGGATTTGGAG+AGG | + | chr8_3:16520682-16520701 | Msa1279490:CDS | 45.0% | |
| CGATCTCAGCTGACTATATG+CGG | - | chr8_3:16520717-16520736 | None:intergenic | 45.0% | |
| TTACTGAGTGGAAGCTCTTC+TGG | + | chr8_3:16520808-16520827 | Msa1279490:intron | 45.0% | |
| TACTGAGTGGAAGCTCTTCT+GGG | + | chr8_3:16520809-16520828 | Msa1279490:intron | 45.0% | |
| GCTTCCATCAGTGTTTCTTC+AGG | + | chr8_3:16520875-16520894 | Msa1279490:CDS | 45.0% | |
| TGTTGGGTTCTTGGGGAATA+TGG | + | chr8_3:16521000-16521019 | Msa1279490:CDS | 45.0% | |
| CATTCCGCTTCCTATATCAC+TGG | + | chr8_3:16521039-16521058 | Msa1279490:CDS | 45.0% | |
| CTTCCCAGTGATATAGGAAG+CGG | - | chr8_3:16521046-16521065 | None:intergenic | 45.0% | |
| CACTGGGAAGTTATGCGATA+TGG | + | chr8_3:16521056-16521075 | Msa1279490:CDS | 45.0% | |
| GTAAACGACGTCGTGTACGA+CGG | - | chr8_3:16516322-16516341 | None:intergenic | 50.0% | |
| !! | GTTACGGTGGTGGATCTGAT+CGG | - | chr8_3:16516422-16516441 | None:intergenic | 50.0% |
| ! | TGCTCCATTGGTTGTTACGG+AGG | - | chr8_3:16516475-16516494 | None:intergenic | 50.0% |
| ! | GATTCGGTCTTCTTCGGCTT+TGG | - | chr8_3:16516599-16516618 | None:intergenic | 50.0% |
| ! | GTTCGGAGATTCGGCGTTTT+AGG | - | chr8_3:16516642-16516661 | None:intergenic | 50.0% |
| CAGAGTAACGGCGAGATAAC+CGG | - | chr8_3:16516800-16516819 | None:intergenic | 50.0% | |
| TGAGATCGTGATCGTCGTTG+AGG | - | chr8_3:16516825-16516844 | None:intergenic | 50.0% | |
| ACAACTAACGGCAAAACGGC+AGG | - | chr8_3:16516955-16516974 | None:intergenic | 50.0% | |
| AGAAGCGGTTAGGAAGAAGG+CGG | + | chr8_3:16516996-16517015 | Msa1279490:CDS | 50.0% | |
| TCATAGGAAATCGGCGTCGT+CGG | + | chr8_3:16517038-16517057 | Msa1279490:CDS | 50.0% | |
| AGAGTAGCACCCATAACACC+AGG | - | chr8_3:16517111-16517130 | None:intergenic | 50.0% | |
| ATCACCTGAACGAAAGGAGC+CGG | - | chr8_3:16517261-16517280 | None:intergenic | 50.0% | |
| CGAGCACAAAACATGCCGAT+TGG | - | chr8_3:16517637-16517656 | None:intergenic | 50.0% | |
| GCAGAATCATAGTGTGGCAG+TGG | + | chr8_3:16517709-16517728 | Msa1279490:intron | 50.0% | |
| ! | GATGAGTTGGATGGCAACCA+TGG | + | chr8_3:16517833-16517852 | Msa1279490:intron | 50.0% |
| CGCAGCAGCTTCTAACAACT+TGG | - | chr8_3:16518640-16518659 | None:intergenic | 50.0% | |
| ! | TGCCGTCATTGACTGCTTAG+AGG | + | chr8_3:16518890-16518909 | Msa1279490:CDS | 50.0% |
| AATGTGGAAGGAAGCCTAGC+AGG | - | chr8_3:16519563-16519582 | None:intergenic | 50.0% | |
| ! | TAACTAGTAATGGAGGCCGG+TGG | + | chr8_3:16519888-16519907 | Msa1279490:intron | 50.0% |
| ! | GAAGCTCTTCTGGGAGATGT+AGG | + | chr8_3:16520818-16520837 | Msa1279490:intron | 50.0% |
| GAAGTTATGCGATATGGCCG+AGG | + | chr8_3:16521062-16521081 | Msa1279490:CDS | 50.0% | |
| ! | GGGTTTGGAGAGTGTGAAGG+TGG | - | chr8_3:16516359-16516378 | None:intergenic | 55.0% |
| GATCGGAGGGGTTGTGGTTA+TGG | - | chr8_3:16516405-16516424 | None:intergenic | 55.0% | |
| ATGGTTCCCGGAGGTGGTTA+CGG | - | chr8_3:16516438-16516457 | None:intergenic | 55.0% | |
| ! | TTGGATCCGGTGATGGTTCC+CGG | - | chr8_3:16516450-16516469 | None:intergenic | 55.0% |
| !!! | GGAGGTTTTGGATCCGGTGA+TGG | - | chr8_3:16516457-16516476 | None:intergenic | 55.0% |
| GAACTCGCCATGGGATCACA+AGG | + | chr8_3:16516514-16516533 | Msa1279490:CDS | 55.0% | |
| ATGGGATCACAAGGCGCGTT+CGG | + | chr8_3:16516523-16516542 | Msa1279490:CDS | 55.0% | |
| AGGCGCGTTCGGTCAATCAA+AGG | + | chr8_3:16516534-16516553 | Msa1279490:CDS | 55.0% | |
| CTCGGTCACGACGCTTCTTT+CGG | + | chr8_3:16516721-16516740 | Msa1279490:CDS | 55.0% | |
| CGCATGGGAAAGAAGCGGTT+AGG | + | chr8_3:16516986-16517005 | Msa1279490:CDS | 55.0% | |
| GGTTAGGAAGAAGGCGGTCA+TGG | + | chr8_3:16517002-16517021 | Msa1279490:CDS | 55.0% | |
| !! | GTCGTCGGTTTCGCATCTTG+TGG | + | chr8_3:16517053-16517072 | Msa1279490:CDS | 55.0% |
| GGCGTGAAGATAACAGCCAC+CGG | - | chr8_3:16519907-16519926 | None:intergenic | 55.0% | |
| GGGGAATATGGCACAGCTGA+TGG | + | chr8_3:16521012-16521031 | Msa1279490:CDS | 55.0% | |
| GGATCTGATCGGAGGGGTTG+TGG | - | chr8_3:16516411-16516430 | None:intergenic | 60.0% | |
| !! | GGTGGTGGATCTGATCGGAG+GGG | - | chr8_3:16516417-16516436 | None:intergenic | 60.0% |
| !! | CGGTGGTGGATCTGATCGGA+GGG | - | chr8_3:16516418-16516437 | None:intergenic | 60.0% |
| !! | ACGGTGGTGGATCTGATCGG+AGG | - | chr8_3:16516419-16516438 | None:intergenic | 60.0% |
| TCCACCACCGTAACCACCTC+CGG | + | chr8_3:16516428-16516447 | Msa1279490:five_prime_UTR | 60.0% | |
| GTGATCCCATGGCGAGTTCG+CGG | - | chr8_3:16516513-16516532 | None:intergenic | 60.0% | |
| GAACGCGCCTTGTGATCCCA+TGG | - | chr8_3:16516524-16516543 | None:intergenic | 60.0% | |
| GAACGAAAGGAGCCGGCATC+TGG | - | chr8_3:16517254-16517273 | None:intergenic | 60.0% | |
| !! | GATGCCGGCTCCTTTCGTTC+AGG | + | chr8_3:16517254-16517273 | Msa1279490:CDS | 60.0% |
| CCACCACCGTAACCACCTCC+GGG | + | chr8_3:16516429-16516448 | Msa1279490:five_prime_UTR | 65.0% | |
| GTTCCCGGAGGTGGTTACGG+TGG | - | chr8_3:16516435-16516454 | None:intergenic | 65.0% | |
| CCACCTCCGGGAACCATCAC+CGG | + | chr8_3:16516441-16516460 | Msa1279490:five_prime_UTR | 65.0% | |
| ! | GATCCGGTGATGGTTCCCGG+AGG | - | chr8_3:16516447-16516466 | None:intergenic | 65.0% |
| AATCGGCCGCGAACTCGCCA+TGG | + | chr8_3:16516504-16516523 | Msa1279490:CDS | 65.0% | |
| ATCGGCCGCGAACTCGCCAT+GGG | + | chr8_3:16516505-16516524 | Msa1279490:CDS | 65.0% | |
| CCCGGAGGTGGTTACGGTGG+TGG | - | chr8_3:16516432-16516451 | None:intergenic | 70.0% | |
| ! | CCGGTGATGGTTCCCGGAGG+TGG | - | chr8_3:16516444-16516463 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 16516293 | 16521122 | 16516293 | ID=Msa1279490;Name=Msa1279490 |
| chr8_3 | mRNA | 16516293 | 16521122 | 16516293 | ID=Msa1279490-mRNA-1;Parent=Msa1279490;Name=Msa1279490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=194|1|0.85|1|1|1|7|0|543 |
| chr8_3 | exon | 16516293 | 16517275 | 16516293 | ID=Msa1279490-mRNA-1:exon:6460;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16518468 | 16518683 | 16518468 | ID=Msa1279490-mRNA-1:exon:6461;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16518801 | 16518911 | 16518801 | ID=Msa1279490-mRNA-1:exon:6462;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16520319 | 16520516 | 16520319 | ID=Msa1279490-mRNA-1:exon:6463;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16520611 | 16520742 | 16520611 | ID=Msa1279490-mRNA-1:exon:6464;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16520840 | 16520896 | 16520840 | ID=Msa1279490-mRNA-1:exon:6465;Parent=Msa1279490-mRNA-1 |
| chr8_3 | exon | 16520994 | 16521122 | 16520994 | ID=Msa1279490-mRNA-1:exon:6466;Parent=Msa1279490-mRNA-1 |
| chr8_3 | five_prime_UTR | 16516293 | 16516486 | 16516293 | ID=Msa1279490-mRNA-1:five_prime_utr;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16516487 | 16517275 | 16516487 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16518468 | 16518683 | 16518468 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16518801 | 16518911 | 16518801 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16520319 | 16520516 | 16520319 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16520611 | 16520742 | 16520611 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16520840 | 16520896 | 16520840 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| chr8_3 | CDS | 16520994 | 16521122 | 16520994 | ID=Msa1279490-mRNA-1:cds;Parent=Msa1279490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
