AlfalfaGEDB | Msa1404220

M. sativa cultivar zhongmu-4 / Msa1404220

KEGG: K10357
GO: GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005911 GO:0006928 GO:0007275 GO:0008092 GO:0008144 GO:0008150 GO:0009506 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009932 GO:0009987 GO:0010015 GO:0010026 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0012505 GO:0015629 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0021700 GO:0022414 GO:0022622 GO:0030029 GO:0030048 GO:0030054 GO:0030133 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0033275 GO:0035618 GO:0035619 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051645 GO:0051646 GO:0051656 GO:0055044 GO:0060151 GO:0060560 GO:0061458 GO:0070252 GO:0071695 GO:0071840 GO:0080147 GO:0090436 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0097159 GO:0097367 GO:0097708 GO:0099402 GO:0120025 GO:0120038 GO:0140027 GO:1901265 GO:1901363 GO:1905392
PFAM: PF02736.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404220	XP_013458436.1	98.314	771	6	1	1	764	1	771	0.0	1588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404220	sp\|F4K5J1\|MYO17_ARATH	86.511	771	97	1	1	764	1	771	0.0	1417

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404220	A0A072US24	98.314	771	6	1	1	764	1	771	0.0	1588

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001400	Msa1404220	0.804016	2.644603e-49	-8.615850e-47
Msa0033160	Msa1404220	0.809497	1.837727e-50	-8.615850e-47
Msa0042330	Msa1404220	0.819152	1.349337e-52	-8.615850e-47
Msa0045560	Msa1404220	0.835549	1.573044e-56	-8.615850e-47
Msa0095830	Msa1404220	0.813434	2.564903e-51	-8.615850e-47
Msa0126270	Msa1404220	0.856237	3.685555e-62	-8.615850e-47
Msa0142050	Msa1404220	0.851678	7.592014e-61	-8.615850e-47
Msa0179250	Msa1404220	0.810321	1.221885e-50	-8.615850e-47
Msa0197630	Msa1404220	0.834786	2.450843e-56	-8.615850e-47
Msa0269800	Msa1404220	0.874438	6.751245e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1404220	MtrunA17_Chr4g0070771	98.314	771	6	1	1	764	1	771	1588
Msa1404220	MtrunA17_Chr1g0190471	77.821	771	163	2	1	764	1	770	1276
Msa1404220	MtrunA17_Chr2g0309291	77.302	771	167	2	1	764	1	770	1274
Msa1404220	MtrunA17_Chr7g0262581	76.295	772	175	2	1	764	1	772	1255
Msa1404220	MtrunA17_Chr1g0183001	75.550	773	180	2	1	764	1	773	1245
Msa1404220	MtrunA17_Chr7g0274361	74.742	776	148	3	4	764	50	792	1229
Msa1404220	MtrunA17_Chr1g0184391	73.057	772	200	2	1	764	1	772	1212
Msa1404220	MtrunA17_Chr1g0184601	73.047	768	199	2	4	764	6	772	1201
Msa1404220	MtrunA17_Chr1g0151061	66.190	769	250	4	5	764	1	768	1055
Msa1404220	MtrunA17_Chr3g0136341	65.882	765	250	5	10	764	6	769	1041

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1404220	AT5G20490.2	86.511	771	97	1	1	764	1	771	1417
Msa1404220	AT5G20490.1	86.719	768	95	1	4	764	3	770	1416
Msa1404220	AT1G08730.2	80.674	771	142	1	1	764	1	771	1328
Msa1404220	AT1G54560.2	80.026	771	147	1	1	764	1	771	1321
Msa1404220	AT1G54560.1	80.208	768	145	1	4	764	7	774	1320
Msa1404220	AT1G08730.1	80.603	763	141	1	9	764	17	779	1315
Msa1404220	AT5G20490.3	87.660	705	80	1	67	764	1	705	1311
Msa1404220	AT1G17580.1	81.193	771	135	3	1	764	1	768	1300
Msa1404220	AT2G31900.4	75.227	771	183	2	1	764	1	770	1254
Msa1404220	AT2G31900.1	75.227	771	183	2	1	764	1	770	1254

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Find 181 sgRNAs with CRISPR-Local

Find 795 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGTAATTTCTCTC+CGG	0.549951	tig0023052:+6931	None:intergenic
AAATGTTTCATGCGTAGACT+TGG	0.439171	tig0023052:+5125	None:intergenic
AAATTAGTTCGAGAAAGTTT+TGG	0.388723	tig0023052:+5054	None:intergenic
AAGACTCTTCTGGAGAGGGG+GGG	0.613864	tig0023052:+4762	None:intergenic
AAGCTGAAGAAGAAAACAAA+AGG	0.517970	tig0023052:+11113	None:intergenic
AAGGATAATGAAGCCCCACC+TGG	0.530295	tig0023052:-8176	Msa1404220:CDS
AATATCTCATTATGCTGGAG+AGG	0.608497	tig0023052:-5028	Msa1404220:intron
AATCCAGTTCTTGAAGCATT+TGG	0.356316	tig0023052:-7372	Msa1404220:CDS
AATGGGTATGAAAGGCTATC+AGG	0.428119	tig0023052:-3990	Msa1404220:intron
AATGTTTCATGCGTAGACTT+GGG	0.562080	tig0023052:+5126	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGGAAATGAGGTAATAAA+AGG	+	tig0023052:180-199	None:intergenic	30.0%
TTTGAAGAAAGAAGGAAATG+AGG	+	tig0023052:190-209	None:intergenic	30.0%
AAGCTGAAGAAGAAAACAAA+AGG	+	tig0023052:303-322	None:intergenic	30.0%
AATGGAAAAACTAGAACTAG+TGG	-	tig0023052:928-947	Msa1404220:intron	30.0%
AATGTTACATTGTTCTTCAC+CGG	-	tig0023052:1003-1022	Msa1404220:intron	30.0%
ATTCATGAGATTCATCTCAT+GGG	+	tig0023052:1411-1430	None:intergenic	30.0%
AAGAGAGAGAGAGTTATTTA+TGG	-	tig0023052:1438-1457	Msa1404220:intron	30.0%
AGAGAGAGAGAGTTATTTAT+GGG	-	tig0023052:1439-1458	Msa1404220:intron	30.0%
AGTAAATGGTATGATAGGAA+AGG	+	tig0023052:1663-1682	None:intergenic	30.0%
AGAGTAGTAAATGGTATGAT+AGG	+	tig0023052:1668-1687	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023052	gene	177	11258	177	ID=Msa1404220;Name=Msa1404220
tig0023052	mRNA	177	11258	177	ID=Msa1404220-mRNA-1;Parent=Msa1404220;Name=Msa1404220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=276\|0.94\|0.9\|1\|0.94\|0.9\|20\|0\|764
tig0023052	exon	177	356	177	ID=Msa1404220-mRNA-1:exon:19728;Parent=Msa1404220-mRNA-1
tig0023052	exon	3991	4051	3991	ID=Msa1404220-mRNA-1:exon:19727;Parent=Msa1404220-mRNA-1
tig0023052	exon	4240	4349	4240	ID=Msa1404220-mRNA-1:exon:19726;Parent=Msa1404220-mRNA-1
tig0023052	exon	4469	4600	4469	ID=Msa1404220-mRNA-1:exon:19725;Parent=Msa1404220-mRNA-1
tig0023052	exon	4721	4891	4721	ID=Msa1404220-mRNA-1:exon:19724;Parent=Msa1404220-mRNA-1
tig0023052	exon	5029	5155	5029	ID=Msa1404220-mRNA-1:exon:19723;Parent=Msa1404220-mRNA-1
tig0023052	exon	5364	5401	5364	ID=Msa1404220-mRNA-1:exon:19722;Parent=Msa1404220-mRNA-1
tig0023052	exon	5584	5685	5584	ID=Msa1404220-mRNA-1:exon:19721;Parent=Msa1404220-mRNA-1
tig0023052	exon	5777	5834	5777	ID=Msa1404220-mRNA-1:exon:19720;Parent=Msa1404220-mRNA-1
tig0023052	exon	5907	6008	5907	ID=Msa1404220-mRNA-1:exon:19719;Parent=Msa1404220-mRNA-1
tig0023052	exon	6228	6353	6228	ID=Msa1404220-mRNA-1:exon:19718;Parent=Msa1404220-mRNA-1
tig0023052	exon	6437	6573	6437	ID=Msa1404220-mRNA-1:exon:19717;Parent=Msa1404220-mRNA-1
tig0023052	exon	6652	6801	6652	ID=Msa1404220-mRNA-1:exon:19716;Parent=Msa1404220-mRNA-1
tig0023052	exon	6903	7062	6903	ID=Msa1404220-mRNA-1:exon:19715;Parent=Msa1404220-mRNA-1
tig0023052	exon	7339	7397	7339	ID=Msa1404220-mRNA-1:exon:19714;Parent=Msa1404220-mRNA-1
tig0023052	exon	7584	7740	7584	ID=Msa1404220-mRNA-1:exon:19713;Parent=Msa1404220-mRNA-1
tig0023052	exon	7827	7972	7827	ID=Msa1404220-mRNA-1:exon:19712;Parent=Msa1404220-mRNA-1
tig0023052	exon	8085	8228	8085	ID=Msa1404220-mRNA-1:exon:19711;Parent=Msa1404220-mRNA-1
tig0023052	exon	8526	8654	8526	ID=Msa1404220-mRNA-1:exon:19710;Parent=Msa1404220-mRNA-1
tig0023052	exon	10980	11258	10980	ID=Msa1404220-mRNA-1:exon:19709;Parent=Msa1404220-mRNA-1
tig0023052	five_prime_UTR	10983	11258	10983	ID=Msa1404220-mRNA-1:five_prime_utr;Parent=Msa1404220-mRNA-1
tig0023052	CDS	10980	10982	10980	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	8526	8654	8526	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	8085	8228	8085	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	7827	7972	7827	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	7584	7740	7584	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	7339	7397	7339	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	6903	7062	6903	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	6652	6801	6652	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	6437	6573	6437	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	6228	6353	6228	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	5907	6008	5907	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	5777	5834	5777	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	5584	5685	5584	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	5364	5401	5364	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	5029	5155	5029	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	4721	4891	4721	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	4469	4600	4469	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	4240	4349	4240	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	3991	4051	3991	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1
tig0023052	CDS	177	356	177	ID=Msa1404220-mRNA-1:cds;Parent=Msa1404220-mRNA-1

Gene Sequence

>Msa1404220

ATGTCTGCACCAGTGAACATAATTGTTGGTTCTCATGTCTGGGTTGAAGATCCATCACTAGCATGGATTGGTGGAGAAGTTACTAAAATCAACGGTGGAGAAGTCCATGTTCGCACTGGAGATGGGAAAACAGTTGTCAAAAGTATCTCAAAGGTTTTTCCCAAGGATAATGAAGCCCCACCTGGAGGTGTAGATGACATGACAAAATTGTCATACTTGCATGAACCAGGAGTTCTAAACAACTTGGCAACTAGATATGAGCTTAACGAAATCTATACATATACTGGAAATATCCTGATTGCGATAAACCCTTTTCAAAGGTTGCCACATCTATATGATACCCACATGATGCAACAATACAAAGGAGCTGCATTTGGAGAGTTAAGTCCCCATGTTTTTGCAGTTGCAGATGTTGCATACAGGGCAATGATCAATGAGGGAAAAAGCAACTCAATCCTGGTTAGTGGTGAGAGTGGGGCTGGTAAGACAGAGACAACAAAAATGCTTATGCGGTATCTTGCATACCTTGGAGGCCGATCTGGAGTAGAAGGGCGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTTCTTGAAGCATTTGGCAATGCCAAAACAGTGAGAAACAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGGATTTCTGGGGCAGCTATACGAACTTATCTACTCGAGAGGTCCCGTGTTTGTCAAGTTTCAGATCCGGAGAGAAATTACCACTGTTTTTACCTTCTTTGTGCAGCACCAGCTGAGGAAAGAGAGAAGTTTAAGCTGGGTAATCCTAGCTCCTTCCATTACCTAAACCAATCCAACTGCTATGGGCTCGATGGAGTGGATGATGCAGAAGAATATCTTGCAACTCGAAGAGCAATGGATGTTGTTGGAATCAGTGAGGAGGAGCAGGATGCAATTTTTAGGGTTGTAGCAGCAGTCTTGCACCTTGGAAATATTGAATTTGCAAAAGGAGAGGAAATTGATTCTTCTGTCCTTAAGGATGAGAAGTCTAGGTTCCATCTTAATACGACTGCTGAGCTTCTCAAGTGTGATGCTAAGAGCTTGGAAGACGCACTGATCCAGCGTGTCATGGTAACGCCTGAGGAGGTTATTACAAGAACACTTGATCCTGTTGCAGCTCTCGGCAGCAGGGATGCATTAGCTAAAACTATGCTTGTGGAGAAGATTAACAATTCAATTGGGCAAGATCCAACTTCAAAATCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTTAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTACAGCAACATTTTAATCAGCATGTCTTCAAAATGGAACAAGAAGAATACACCAAAGAAGAAATCGATTGGAGTTACATAGAGTTCGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTTCACTTCTTGATGAAGCCTGCATGTTTCCCAAGTCTACGCATGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAACAACAAGCGCTTTATCAAACCAAAACTTTCTCGAACTAATTTCACAATATCTCATTATGCTGGAGAGGTGACATATCAGGCTGATATGTTTCTGGACAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGTTGATAGCCTCAAAATGCTCCTTTGTGGCAGGTCTATTCCCCCCCTCTCCAGAAGAGTCTTCAAAATCATCAAAGTTCTCTTCAATAGGATCTCGCTTTAAGTCACAACTTCAGTCGTTGATGGAGACTCTAAGTTCAACAGAACCTCACTATATTAGATGCGTGAAGCCGAATAATGTTCTCAAGCCTGCTATTTTTGAAAATGTCAATATTATCCAACAACTGCGCTGTGGTGGTGTTCTAGAGGCAATTAGAATCAGTTGTGCTGGATATCCTACAAGACGGACCTTTTATGAATTTCTCAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTGGATGGAAACTACGATGACAAGGTTGCATGCCAAATGATCCTGGGTAAAATGGGTATGAAAGGCTATCAGATAGGAAAGACAAAGGTTTTCCTAAGAGCGGGCCAGATGGCTGAGTTGGATGCAAGAAGATCTGAAGTCCTTGGAAATGCTGCTAGAATCATCCAGAGGCAAACACGTACCCATATTGCACGAAAGGAATTCATTGAATTGCGTCGAGCTGCAATTAGTTTGCAATCTAATTTACGAGGT

Protein sequence

>Msa1404220

MSAPVNIIVGSHVWVEDPSLAWIGGEVTKINGGEVHVRTGDGKTVVKSISKVFPKDNEAPPGGVDDMTKLSYLHEPGVLNNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMQQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPAEEREKFKLGNPSSFHYLNQSNCYGLDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAVLHLGNIEFAKGEEIDSSVLKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTMLVEKINNSIGQDPTSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTNFTISHYAGEVTYQADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKSQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENVNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQMILGKMGMKGYQIGKTKVFLRAGQMAELDARRSEVLGNAARIIQRQTRTHIARKEFIELRRAAISLQSNLRG