Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127570 | A0A072VNQ1 | 91.582 | 297 | 20 | 2 | 1 | 294 | 1 | 295 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0127570 | Msa0184420 | 0.950029 | 3.816303e-108 | -8.615850e-47 |
| Msa0127570 | Msa0667840 | -0.803655 | 3.142703e-49 | -8.615850e-47 |
| Msa0127570 | Msa0714230 | -0.816064 | 6.705179e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127570 | MtrunA17_Chr1g0191161 | 91.582 | 297 | 20 | 2 | 1 | 294 | 1 | 295 | 0.0 | 543 |
| Msa0127570 | MtrunA17_Chr1g0210431 | 66.667 | 69 | 20 | 2 | 1 | 66 | 1 | 69 | 7.50e-24 | 94.0 |
| Msa0127570 | MtrunA17_Chr6g0462231 | 69.697 | 66 | 17 | 2 | 1 | 63 | 1 | 66 | 2.33e-22 | 89.7 |
| Msa0127570 | MtrunA17_Chr1g0210451 | 57.534 | 73 | 27 | 2 | 1 | 69 | 1 | 73 | 8.48e-19 | 79.7 |
| Msa0127570 | MtrunA17_Chr5g0436821 | 54.237 | 59 | 25 | 1 | 14 | 70 | 1 | 59 | 1.42e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127570 | AT2G40020.2 | 44.444 | 72 | 39 | 1 | 1 | 71 | 1 | 72 | 7.11e-14 | 68.9 |
| Msa0127570 | AT2G40020.3 | 41.772 | 79 | 45 | 1 | 1 | 78 | 1 | 79 | 2.10e-13 | 68.9 |
Find 107 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTGCCTGCAGCCTTAA+TGG | 0.199764 | 1_3:-56992666 | None:intergenic |
| CCCAATGAGGCATCGGCTTC+TGG | 0.268170 | 1_3:+56992308 | Msa0127570:CDS |
| TTCAACAACAATACTTGTTT+TGG | 0.281297 | 1_3:+56993193 | Msa0127570:three_prime_UTR |
| AAGTAATCAACTTTCCATTA+TGG | 0.288420 | 1_3:+56992544 | Msa0127570:CDS |
| GCCTCATTGGGACCATTTCC+TGG | 0.308455 | 1_3:-56992296 | None:intergenic |
| ATCTTACTTAGTTAAGTCTT+TGG | 0.324559 | 1_3:+56993262 | Msa0127570:three_prime_UTR |
| GTTTGACGAACGAGTTTGTT+AGG | 0.357257 | 1_3:-56990522 | None:intergenic |
| TAGTAATCCACCTTCCATTA+AGG | 0.360557 | 1_3:+56992652 | Msa0127570:CDS |
| TTCAGTGTCTGCGGCCATAA+TGG | 0.365812 | 1_3:-56992558 | None:intergenic |
| ACAAAGTCCTCACAACCTAT+TGG | 0.373795 | 1_3:+56992866 | Msa0127570:CDS |
| AACTTGGTTGTTAATTTCAT+TGG | 0.383404 | 1_3:-56992696 | None:intergenic |
| ACCAGAAGCCGATGCCTCAT+TGG | 0.394264 | 1_3:-56992309 | None:intergenic |
| ATATCAGCAGCCAGTGAAAC+TGG | 0.395050 | 1_3:+56992419 | Msa0127570:CDS |
| CGTCCTCTTGGAGCCATTGT+TGG | 0.401386 | 1_3:-56990349 | None:intergenic |
| AGAACCTTTGGTCGTCCTCT+TGG | 0.406725 | 1_3:-56990361 | None:intergenic |
| TTCTGATGATGAGGAGGAGG+AGG | 0.407593 | 1_3:+56992931 | Msa0127570:CDS |
| TGTGAAGGATTATTTGATAG+AGG | 0.411419 | 1_3:+56992268 | Msa0127570:intron |
| TTATAATTAAGAAACCAAAA+AGG | 0.411471 | 1_3:-56993239 | None:intergenic |
| TTTAGGTTTATGACGGTAGT+TGG | 0.415465 | 1_3:+56990669 | Msa0127570:intron |
| CTCCAAGGTTTCAGAATGAT+AGG | 0.415644 | 1_3:+56993091 | Msa0127570:three_prime_UTR |
| TGATGATGAGGAGGAGGAGG+GGG | 0.417891 | 1_3:+56992934 | Msa0127570:CDS |
| TTGTGACAAAGCTTTCCAAT+AGG | 0.418635 | 1_3:-56992881 | None:intergenic |
| CACCTATCATTCTGAAACCT+TGG | 0.420580 | 1_3:-56993093 | None:intergenic |
| TTAATGGAAGGTGGATTACT+AGG | 0.428557 | 1_3:-56992650 | None:intergenic |
| TGAAGTGTCAACGGGCTTGA+TGG | 0.435421 | 1_3:-56992612 | None:intergenic |
| GATGCAGTGTCCACAGTCAT+AGG | 0.437332 | 1_3:-56992452 | None:intergenic |
| GTATCAGCAGACAATGGATA+TGG | 0.438141 | 1_3:+56992743 | Msa0127570:CDS |
| ATAATGGAAAGTTGATTACT+TGG | 0.448544 | 1_3:-56992542 | None:intergenic |
| CCAGAAGCCGATGCCTCATT+GGG | 0.450493 | 1_3:-56992308 | None:intergenic |
| AGTCTCTATAATAGCCTTGA+TGG | 0.450701 | 1_3:-56992720 | None:intergenic |
| ACAACAACAAAATCAGAATC+AGG | 0.455434 | 1_3:+56990745 | Msa0127570:CDS |
| CCTACCTTGCTCTTCTAACA+TGG | 0.458449 | 1_3:+56992352 | Msa0127570:CDS |
| TAATAGCCTTGATGGGAACT+TGG | 0.458568 | 1_3:-56992712 | None:intergenic |
| GCATTGTATAAGCTAGTGAA+TGG | 0.460789 | 1_3:+56992974 | Msa0127570:CDS |
| TGAATTGTTGACGGGCTTGA+TGG | 0.462535 | 1_3:-56992504 | None:intergenic |
| GGTTGTGAGGACTTTGTTTG+AGG | 0.464575 | 1_3:-56992860 | None:intergenic |
| TATTTGATAGAGGGTAATCC+AGG | 0.472005 | 1_3:+56992278 | Msa0127570:CDS |
| ATAGAGGGTAATCCAGGAAA+TGG | 0.475064 | 1_3:+56992284 | Msa0127570:CDS |
| GAAGTGTCAACGGGCTTGAT+GGG | 0.477540 | 1_3:-56992611 | None:intergenic |
| TGATGCGCCATTACCTAGTC+AGG | 0.478335 | 1_3:+56992385 | Msa0127570:CDS |
| TAGAAGAGCAAGGTAGGAGA+AGG | 0.482533 | 1_3:-56992346 | None:intergenic |
| TGGAAGGTGGATTACTAGGT+TGG | 0.486413 | 1_3:-56992646 | None:intergenic |
| TCAAGTAGTGTTTAAAGAGC+AGG | 0.489627 | 1_3:+56993029 | Msa0127570:exon |
| ATTACTTGGTTGACTGGTGG+CGG | 0.490984 | 1_3:-56992528 | None:intergenic |
| GTGGCGGATGAAGTGTCAAC+GGG | 0.492498 | 1_3:-56992620 | None:intergenic |
| AGGTGGATTACTAGGTTGGC+TGG | 0.493754 | 1_3:-56992642 | None:intergenic |
| GGCGTCGACCTTGCCATGGT+TGG | 0.493924 | 1_3:+56992906 | Msa0127570:CDS |
| GTGGCGGCTGAATTGTTGAC+GGG | 0.497692 | 1_3:-56992512 | None:intergenic |
| TCTGATGATGAGGAGGAGGA+GGG | 0.499936 | 1_3:+56992932 | Msa0127570:CDS |
| CAAGAATAGTATCAATGAGA+AGG | 0.501616 | 1_3:-56990718 | None:intergenic |
| CTGATGATGAGGAGGAGGAG+GGG | 0.502777 | 1_3:+56992933 | Msa0127570:CDS |
| GGTGGCGGCTGAATTGTTGA+CGG | 0.505104 | 1_3:-56992513 | None:intergenic |
| AAGTTGATTACTTGGTTGAC+TGG | 0.515398 | 1_3:-56992534 | None:intergenic |
| AAGTTGATGACCAGTTTCAC+TGG | 0.517162 | 1_3:-56992429 | None:intergenic |
| CCACCTTCCATTAAGGCTGC+AGG | 0.522608 | 1_3:+56992659 | Msa0127570:CDS |
| TGGAGCCATTGTTGGAAGGA+AGG | 0.522675 | 1_3:-56990341 | None:intergenic |
| ACAGAAAGGTGAGAGGAGAA+TGG | 0.528163 | 1_3:+56990464 | Msa0127570:intron |
| TTCACTAGCTTATACAATGC+AGG | 0.529881 | 1_3:-56992971 | None:intergenic |
| ATTACTAGGTTGGCTGGTGG+CGG | 0.531150 | 1_3:-56992636 | None:intergenic |
| GATTTCTGATGATGAGGAGG+AGG | 0.533613 | 1_3:+56992928 | Msa0127570:CDS |
| CATTGTATAAGCTAGTGAAT+GGG | 0.534796 | 1_3:+56992975 | Msa0127570:CDS |
| GAATTGTTGACGGGCTTGAT+GGG | 0.535292 | 1_3:-56992503 | None:intergenic |
| TCCCCTGTGTCTAGAATGCA+TGG | 0.535848 | 1_3:+56993132 | Msa0127570:three_prime_UTR |
| CCATGTTAGAAGAGCAAGGT+AGG | 0.538702 | 1_3:-56992352 | None:intergenic |
| ACTAGGTAATGGCGCATCAT+CGG | 0.541244 | 1_3:-56992381 | None:intergenic |
| GTTGTATCAGATTAGCTCCA+AGG | 0.542792 | 1_3:+56993076 | Msa0127570:three_prime_UTR |
| CCAACAGCCTGACTAGGTAA+TGG | 0.545720 | 1_3:-56992392 | None:intergenic |
| CTCTTGGAGCCATTGTTGGA+AGG | 0.547511 | 1_3:-56990345 | None:intergenic |
| TACTTTGAGCAATTGATCAA+CGG | 0.547765 | 1_3:-56990544 | None:intergenic |
| GTGAAGGATTATTTGATAGA+GGG | 0.553277 | 1_3:+56992269 | Msa0127570:intron |
| CCATTACCTAGTCAGGCTGT+TGG | 0.557254 | 1_3:+56992392 | Msa0127570:CDS |
| GTCTCTATAATAGCCTTGAT+GGG | 0.560227 | 1_3:-56992719 | None:intergenic |
| GGTGGCGGATGAAGTGTCAA+CGG | 0.562818 | 1_3:-56992621 | None:intergenic |
| TAACAACCAAGTTCCCATCA+AGG | 0.571507 | 1_3:+56992706 | Msa0127570:CDS |
| AAATGGTCCCAATGAGGCAT+CGG | 0.576176 | 1_3:+56992301 | Msa0127570:CDS |
| TCTCACCTTCCTTCCAACAA+TGG | 0.578264 | 1_3:+56990336 | Msa0127570:exon |
| TTGGAAAGCTTTGTCACAAG+AGG | 0.581164 | 1_3:+56992885 | Msa0127570:CDS |
| AAGAATAGTATCAATGAGAA+GGG | 0.582007 | 1_3:-56990717 | None:intergenic |
| GTGCCTGCAGCCTTAATGGA+AGG | 0.583698 | 1_3:-56992662 | None:intergenic |
| GGCTCCAAGAGGACGACCAA+AGG | 0.596610 | 1_3:+56990357 | Msa0127570:CDS |
| CGCAGCTGTTTCAGTGTCTG+CGG | 0.598889 | 1_3:-56992567 | None:intergenic |
| ATTTGTGTTTAGGTTTATGA+CGG | 0.600074 | 1_3:+56990662 | Msa0127570:intron |
| AAGCCATGCATTCTAGACAC+AGG | 0.600296 | 1_3:-56993135 | None:intergenic |
| TCATCAACTTCCTATGACTG+TGG | 0.601873 | 1_3:+56992442 | Msa0127570:CDS |
| CTCGACGCTATGATTCCGTA+TGG | 0.602511 | 1_3:+56990495 | Msa0127570:CDS |
| ATAGTGCCAACAGCCTGACT+AGG | 0.610418 | 1_3:-56992398 | None:intergenic |
| AGAAGAGCAAGGTAGGAGAA+GGG | 0.615751 | 1_3:-56992345 | None:intergenic |
| AAGCTTTCCAATAGGTTGTG+AGG | 0.617381 | 1_3:-56992873 | None:intergenic |
| CCTGCAGCCTTAATGGAAGG+TGG | 0.618279 | 1_3:-56992659 | None:intergenic |
| TCATTTCACAGAAAGGTGAG+AGG | 0.619282 | 1_3:+56990457 | Msa0127570:intron |
| AGCCATGCATTCTAGACACA+GGG | 0.619972 | 1_3:-56993134 | None:intergenic |
| AAGAGGCGTCGACCTTGCCA+TGG | 0.621523 | 1_3:+56992902 | Msa0127570:CDS |
| TGGTTGGATTTCTGATGATG+AGG | 0.621548 | 1_3:+56992922 | Msa0127570:CDS |
| TCAGAAATCCAACCATGGCA+AGG | 0.623253 | 1_3:-56992914 | None:intergenic |
| GAGACTGTATCAGCAGACAA+TGG | 0.637329 | 1_3:+56992737 | Msa0127570:CDS |
| ATGTCCATGTTAGAAGAGCA+AGG | 0.642571 | 1_3:-56992356 | None:intergenic |
| CTATTCGTCAGACCATCGTA+TGG | 0.644114 | 1_3:+56993170 | Msa0127570:three_prime_UTR |
| TGGATTACTAGGTTGGCTGG+TGG | 0.645107 | 1_3:-56992639 | None:intergenic |
| TTGGATTTCTGATGATGAGG+AGG | 0.658696 | 1_3:+56992925 | Msa0127570:CDS |
| TCCAGGAAATGGTCCCAATG+AGG | 0.658956 | 1_3:+56992295 | Msa0127570:CDS |
| AGTTTGTTAGGAAAACCATA+CGG | 0.668712 | 1_3:-56990510 | None:intergenic |
| TTGATTACTTGGTTGACTGG+TGG | 0.672311 | 1_3:-56992531 | None:intergenic |
| ATTGTTGTTGAACCATACGA+TGG | 0.676013 | 1_3:-56993182 | None:intergenic |
| CTTCCAACAATGGCTCCAAG+AGG | 0.677805 | 1_3:+56990346 | Msa0127570:exon |
| CATCATCAGAAATCCAACCA+TGG | 0.680406 | 1_3:-56992919 | None:intergenic |
| ATTGTATAAGCTAGTGAATG+GGG | 0.723488 | 1_3:+56992976 | Msa0127570:CDS |
| GCCATGCATTCTAGACACAG+GGG | 0.743557 | 1_3:-56993133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATCATATTATTAAATTAA+AGG | + | chr1_3:56991013-56991032 | Msa0127570:intron | 10.0% |
| !! | TTAAGAACAAAAATTAATAT+TGG | + | chr1_3:56991256-56991275 | Msa0127570:intron | 10.0% |
| !! | AGAAATGAAGAAAATAAAAA+TGG | - | chr1_3:56990419-56990438 | None:intergenic | 15.0% |
| !! | TCAATTATTGATATAATTTG+TGG | + | chr1_3:56990856-56990875 | Msa0127570:intron | 15.0% |
| !!! | CAATTATTGATATAATTTGT+GGG | + | chr1_3:56990857-56990876 | Msa0127570:intron | 15.0% |
| !!! | AATTATTGATATAATTTGTG+GGG | + | chr1_3:56990858-56990877 | Msa0127570:intron | 15.0% |
| !! | TTCATTAAGTAGTAATTTAA+GGG | - | chr1_3:56991197-56991216 | None:intergenic | 15.0% |
| !! | TTTCATTAAGTAGTAATTTA+AGG | - | chr1_3:56991198-56991217 | None:intergenic | 15.0% |
| !! | TTAATTAACTGTTCTATTAA+AGG | - | chr1_3:56991240-56991259 | None:intergenic | 15.0% |
| !! | TACAATGAGAAATATATTTA+TGG | + | chr1_3:56991314-56991333 | Msa0127570:intron | 15.0% |
| !! | AAAAGATAAAGAAATTTCAT+TGG | - | chr1_3:56992066-56992085 | None:intergenic | 15.0% |
| !!! | TTTTACTATATAAACCTTTT+TGG | + | chr1_3:56993225-56993244 | Msa0127570:three_prime_UTR | 15.0% |
| !! | TTATAATTAAGAAACCAAAA+AGG | - | chr1_3:56993242-56993261 | None:intergenic | 15.0% |
| !! | AATGAAGAAAATAAAAATGG+TGG | - | chr1_3:56990416-56990435 | None:intergenic | 20.0% |
| !!! | TATCTTAAATTTGAGTTGTT+TGG | - | chr1_3:56991140-56991159 | None:intergenic | 20.0% |
| !!! | TCAGTATTTTGTTTATGTTA+TGG | + | chr1_3:56991711-56991730 | Msa0127570:intron | 20.0% |
| !!! | CAGTATTTTGTTTATGTTAT+GGG | + | chr1_3:56991712-56991731 | Msa0127570:intron | 20.0% |
| !! | ATTGAAACAAATACTGAATT+TGG | - | chr1_3:56991805-56991824 | None:intergenic | 20.0% |
| !!! | TTTCAATTTATGTTGATAGA+GGG | + | chr1_3:56991818-56991837 | Msa0127570:intron | 20.0% |
| !! | CAAAATTCTTTATGATATAC+AGG | - | chr1_3:56992137-56992156 | None:intergenic | 20.0% |
| !! | GTATATCGTATAGAATTTAA+TGG | + | chr1_3:56992223-56992242 | Msa0127570:intron | 20.0% |
| ! | GTGGAAATGAAATATGAATT+AGG | - | chr1_3:56990397-56990416 | None:intergenic | 25.0% |
| ! | TTTCATTTCATTTCACAGAA+AGG | + | chr1_3:56990450-56990469 | Msa0127570:intron | 25.0% |
| ! | GAAAATGAAACGAAATTAGA+AGG | - | chr1_3:56990609-56990628 | None:intergenic | 25.0% |
| !!! | ACAATGCTTAATTTGTGTTT+AGG | + | chr1_3:56990652-56990671 | Msa0127570:intron | 25.0% |
| !! | ATTTGTGTTTAGGTTTATGA+CGG | + | chr1_3:56990662-56990681 | Msa0127570:intron | 25.0% |
| ! | AAGAATAGTATCAATGAGAA+GGG | - | chr1_3:56990720-56990739 | None:intergenic | 25.0% |
| ! | TTGTTTATTATGCTTTGCTT+GGG | - | chr1_3:56990799-56990818 | None:intergenic | 25.0% |
| ! | ATTGTTTATTATGCTTTGCT+TGG | - | chr1_3:56990800-56990819 | None:intergenic | 25.0% |
| !! | TTTGGTTCAATTATTTGAAG+GGG | - | chr1_3:56991122-56991141 | None:intergenic | 25.0% |
| !! | GTTTGGTTCAATTATTTGAA+GGG | - | chr1_3:56991123-56991142 | None:intergenic | 25.0% |
| !! | TGTTTGGTTCAATTATTTGA+AGG | - | chr1_3:56991124-56991143 | None:intergenic | 25.0% |
| ! | TATTTAACTACTCGTATAGT+AGG | + | chr1_3:56991564-56991583 | Msa0127570:intron | 25.0% |
| !! | GTTTCAATTTATGTTGATAG+AGG | + | chr1_3:56991817-56991836 | Msa0127570:intron | 25.0% |
| !! | ATAATGGAAAGTTGATTACT+TGG | - | chr1_3:56992545-56992564 | None:intergenic | 25.0% |
| ! | AAGTAATCAACTTTCCATTA+TGG | + | chr1_3:56992544-56992563 | Msa0127570:CDS | 25.0% |
| ! | AACTTGGTTGTTAATTTCAT+TGG | - | chr1_3:56992699-56992718 | None:intergenic | 25.0% |
| !!! | TTCACTAGCTTTTTTTTCAT+GGG | - | chr1_3:56993004-56993023 | None:intergenic | 25.0% |
| !!! | ATTCACTAGCTTTTTTTTCA+TGG | - | chr1_3:56993005-56993024 | None:intergenic | 25.0% |
| ! | ATGAAAAAAAAGCTAGTGAA+TGG | + | chr1_3:56993004-56993023 | Msa0127570:CDS | 25.0% |
| !! | TTCAACAACAATACTTGTTT+TGG | + | chr1_3:56993193-56993212 | Msa0127570:three_prime_UTR | 25.0% |
| !! | AGTTTGTTAGGAAAACCATA+CGG | - | chr1_3:56990513-56990532 | None:intergenic | 30.0% |
| TACTTTGAGCAATTGATCAA+CGG | - | chr1_3:56990547-56990566 | None:intergenic | 30.0% | |
| GAAATTAGAAGGTAATAACG+AGG | - | chr1_3:56990598-56990617 | None:intergenic | 30.0% | |
| CAAGAATAGTATCAATGAGA+AGG | - | chr1_3:56990721-56990740 | None:intergenic | 30.0% | |
| ACAACAACAAAATCAGAATC+AGG | + | chr1_3:56990745-56990764 | Msa0127570:CDS | 30.0% | |
| TGTTTATTATGCTTTGCTTG+GGG | - | chr1_3:56990798-56990817 | None:intergenic | 30.0% | |
| ATTGACAGATGTTAGTAGTT+AGG | + | chr1_3:56990916-56990935 | Msa0127570:intron | 30.0% | |
| TTGACAGATGTTAGTAGTTA+GGG | + | chr1_3:56990917-56990936 | Msa0127570:intron | 30.0% | |
| ACAAAATCCAATATGATCGA+AGG | + | chr1_3:56990967-56990986 | Msa0127570:intron | 30.0% | |
| CAAAATCCAATATGATCGAA+GGG | + | chr1_3:56990968-56990987 | Msa0127570:intron | 30.0% | |
| ! | AACAAATATTCCCTCACTTT+TGG | + | chr1_3:56991056-56991075 | Msa0127570:intron | 30.0% |
| !! | TTTTGGAGATGAGGTAAAAT+TGG | + | chr1_3:56991073-56991092 | Msa0127570:intron | 30.0% |
| TTTGGAGATGAGGTAAAATT+GGG | + | chr1_3:56991074-56991093 | Msa0127570:intron | 30.0% | |
| ! | TAGTAATTTAAGGGTGTGTT+TGG | - | chr1_3:56991188-56991207 | None:intergenic | 30.0% |
| ATTTGTAACTGTGTAAGAGA+TGG | + | chr1_3:56991354-56991373 | Msa0127570:intron | 30.0% | |
| GACTTATACCTCATGTATAA+TGG | + | chr1_3:56991400-56991419 | Msa0127570:intron | 30.0% | |
| TAATCACACCATTATACATG+AGG | - | chr1_3:56991411-56991430 | None:intergenic | 30.0% | |
| AGACATCTGTAACTTGAAAA+GGG | - | chr1_3:56991459-56991478 | None:intergenic | 30.0% | |
| AAGACATCTGTAACTTGAAA+AGG | - | chr1_3:56991460-56991479 | None:intergenic | 30.0% | |
| GTACGTTAATCATTACGATT+TGG | + | chr1_3:56991530-56991549 | Msa0127570:intron | 30.0% | |
| GGATTGCAAATTAGCAAATT+GGG | - | chr1_3:56991602-56991621 | None:intergenic | 30.0% | |
| AGGATTGCAAATTAGCAAAT+TGG | - | chr1_3:56991603-56991622 | None:intergenic | 30.0% | |
| GTATATCTTGAATTCCTTCA+TGG | + | chr1_3:56991870-56991889 | Msa0127570:intron | 30.0% | |
| TGAAAAAGAAGAAACCATGA+AGG | - | chr1_3:56991887-56991906 | None:intergenic | 30.0% | |
| ! | ACATGTTGATTAACCATACT+AGG | - | chr1_3:56991972-56991991 | None:intergenic | 30.0% |
| !!! | CTATTTTAACAATGCTTGAG+AGG | + | chr1_3:56992015-56992034 | Msa0127570:intron | 30.0% |
| ATATACAGGCCATTAGATTA+AGG | - | chr1_3:56992123-56992142 | None:intergenic | 30.0% | |
| TGTGAAGGATTATTTGATAG+AGG | + | chr1_3:56992268-56992287 | Msa0127570:intron | 30.0% | |
| GTGAAGGATTATTTGATAGA+GGG | + | chr1_3:56992269-56992288 | Msa0127570:intron | 30.0% | |
| CATTGTATAAGCTAGTGAAT+GGG | + | chr1_3:56992975-56992994 | Msa0127570:CDS | 30.0% | |
| ATTGTATAAGCTAGTGAATG+GGG | + | chr1_3:56992976-56992995 | Msa0127570:CDS | 30.0% | |
| AGGTAATAACGAGGATTAAG+CGG | - | chr1_3:56990589-56990608 | None:intergenic | 35.0% | |
| ! | TTTAGGTTTATGACGGTAGT+TGG | + | chr1_3:56990669-56990688 | Msa0127570:intron | 35.0% |
| GTTTATTATGCTTTGCTTGG+GGG | - | chr1_3:56990797-56990816 | None:intergenic | 35.0% | |
| ! | AATTTAAGGGTGTGTTTGGT+TGG | - | chr1_3:56991184-56991203 | None:intergenic | 35.0% |
| !! | CATTACGATTTGGTTGTTGT+TGG | + | chr1_3:56991540-56991559 | Msa0127570:intron | 35.0% |
| AGTGTAACAACAGACAAAAG+AGG | - | chr1_3:56991623-56991642 | None:intergenic | 35.0% | |
| ! | TGTTGATTAACCATACTAGG+AGG | - | chr1_3:56991969-56991988 | None:intergenic | 35.0% |
| TTAGATTAAGGAGCTAGTAG+AGG | - | chr1_3:56992111-56992130 | None:intergenic | 35.0% | |
| CTACTAGCTCCTTAATCTAA+TGG | + | chr1_3:56992111-56992130 | Msa0127570:intron | 35.0% | |
| ATACGATACACAGACAAAAC+AGG | - | chr1_3:56992171-56992190 | None:intergenic | 35.0% | |
| ATACGATATACAGACAGAAC+AGG | - | chr1_3:56992214-56992233 | None:intergenic | 35.0% | |
| TCTTGTATTGCTATGTGTGA+AGG | + | chr1_3:56992253-56992272 | Msa0127570:intron | 35.0% | |
| TATTTGATAGAGGGTAATCC+AGG | + | chr1_3:56992278-56992297 | Msa0127570:CDS | 35.0% | |
| ! | AAGTTGATTACTTGGTTGAC+TGG | - | chr1_3:56992537-56992556 | None:intergenic | 35.0% |
| !! | TTAATGGAAGGTGGATTACT+AGG | - | chr1_3:56992653-56992672 | None:intergenic | 35.0% |
| TAGTAATCCACCTTCCATTA+AGG | + | chr1_3:56992652-56992671 | Msa0127570:CDS | 35.0% | |
| ! | GTCTCTATAATAGCCTTGAT+GGG | - | chr1_3:56992722-56992741 | None:intergenic | 35.0% |
| ! | AGTCTCTATAATAGCCTTGA+TGG | - | chr1_3:56992723-56992742 | None:intergenic | 35.0% |
| TTTGAGGAATTTCTGCAAGA+AGG | - | chr1_3:56992847-56992866 | None:intergenic | 35.0% | |
| TTGTGACAAAGCTTTCCAAT+AGG | - | chr1_3:56992884-56992903 | None:intergenic | 35.0% | |
| ! | TTCACTAGCTTATACAATGC+AGG | - | chr1_3:56992974-56992993 | None:intergenic | 35.0% |
| GCATTGTATAAGCTAGTGAA+TGG | + | chr1_3:56992974-56992993 | Msa0127570:CDS | 35.0% | |
| TCAAGTAGTGTTTAAAGAGC+AGG | + | chr1_3:56993029-56993048 | Msa0127570:exon | 35.0% | |
| ! | ATTGTTGTTGAACCATACGA+TGG | - | chr1_3:56993185-56993204 | None:intergenic | 35.0% |
| GGTGAATGTGAAAGAACCTT+TGG | - | chr1_3:56990376-56990395 | None:intergenic | 40.0% | |
| TCATTTCACAGAAAGGTGAG+AGG | + | chr1_3:56990457-56990476 | Msa0127570:intron | 40.0% | |
| ! | GTTTGACGAACGAGTTTGTT+AGG | - | chr1_3:56990525-56990544 | None:intergenic | 40.0% |
| TACCTCATCTCCAAAAGTGA+GGG | - | chr1_3:56991069-56991088 | None:intergenic | 40.0% | |
| TTACCTCATCTCCAAAAGTG+AGG | - | chr1_3:56991070-56991089 | None:intergenic | 40.0% | |
| AGATGAGGTAAAATTGGGTC+AGG | + | chr1_3:56991079-56991098 | Msa0127570:intron | 40.0% | |
| TTTGGTTGGAGAGAAATGGA+GGG | - | chr1_3:56991170-56991189 | None:intergenic | 40.0% | |
| TGTGTTTGGTTGGAGAGAAA+TGG | - | chr1_3:56991174-56991193 | None:intergenic | 40.0% | |
| GCAAATTGACCGATGTTTGA+TGG | + | chr1_3:56991503-56991522 | Msa0127570:intron | 40.0% | |
| AATTGACCGATGTTTGATGG+TGG | + | chr1_3:56991506-56991525 | Msa0127570:intron | 40.0% | |
| AATCATAACTTGAGCTGAGC+AGG | - | chr1_3:56991672-56991691 | None:intergenic | 40.0% | |
| CCTGAAACAATGTAGGACAT+TGG | - | chr1_3:56991754-56991773 | None:intergenic | 40.0% | |
| CCAATGTCCTACATTGTTTC+AGG | + | chr1_3:56991751-56991770 | Msa0127570:intron | 40.0% | |
| TCCTACATTGTTTCAGGCTT+AGG | + | chr1_3:56991757-56991776 | Msa0127570:intron | 40.0% | |
| ACCTAAGCCTGAAACAATGT+AGG | - | chr1_3:56991761-56991780 | None:intergenic | 40.0% | |
| GATTAACCATACTAGGAGGT+TGG | - | chr1_3:56991965-56991984 | None:intergenic | 40.0% | |
| ! | GCTAGTAGAGGATTTTCATG+AGG | - | chr1_3:56992099-56992118 | None:intergenic | 40.0% |
| ATAGAGGGTAATCCAGGAAA+TGG | + | chr1_3:56992284-56992303 | Msa0127570:CDS | 40.0% | |
| ATGTCCATGTTAGAAGAGCA+AGG | - | chr1_3:56992359-56992378 | None:intergenic | 40.0% | |
| !! | AAGTTGATGACCAGTTTCAC+TGG | - | chr1_3:56992432-56992451 | None:intergenic | 40.0% |
| TCATCAACTTCCTATGACTG+TGG | + | chr1_3:56992442-56992461 | Msa0127570:CDS | 40.0% | |
| TTGATTACTTGGTTGACTGG+TGG | - | chr1_3:56992534-56992553 | None:intergenic | 40.0% | |
| TAACAACCAAGTTCCCATCA+AGG | + | chr1_3:56992706-56992725 | Msa0127570:CDS | 40.0% | |
| ! | TAATAGCCTTGATGGGAACT+TGG | - | chr1_3:56992715-56992734 | None:intergenic | 40.0% |
| GTATCAGCAGACAATGGATA+TGG | + | chr1_3:56992743-56992762 | Msa0127570:CDS | 40.0% | |
| ACAAAGTCCTCACAACCTAT+TGG | + | chr1_3:56992866-56992885 | Msa0127570:CDS | 40.0% | |
| AAGCTTTCCAATAGGTTGTG+AGG | - | chr1_3:56992876-56992895 | None:intergenic | 40.0% | |
| ! | TTGGAAAGCTTTGTCACAAG+AGG | + | chr1_3:56992885-56992904 | Msa0127570:CDS | 40.0% |
| CATCATCAGAAATCCAACCA+TGG | - | chr1_3:56992922-56992941 | None:intergenic | 40.0% | |
| ! | TGGTTGGATTTCTGATGATG+AGG | + | chr1_3:56992922-56992941 | Msa0127570:CDS | 40.0% |
| ! | TTGGATTTCTGATGATGAGG+AGG | + | chr1_3:56992925-56992944 | Msa0127570:CDS | 40.0% |
| ! | GTTGTATCAGATTAGCTCCA+AGG | + | chr1_3:56993076-56993095 | Msa0127570:three_prime_UTR | 40.0% |
| CTCCAAGGTTTCAGAATGAT+AGG | + | chr1_3:56993091-56993110 | Msa0127570:three_prime_UTR | 40.0% | |
| !! | CACCTATCATTCTGAAACCT+TGG | - | chr1_3:56993096-56993115 | None:intergenic | 40.0% |
| TCTCACCTTCCTTCCAACAA+TGG | + | chr1_3:56990336-56990355 | Msa0127570:exon | 45.0% | |
| ACAGAAAGGTGAGAGGAGAA+TGG | + | chr1_3:56990464-56990483 | Msa0127570:intron | 45.0% | |
| TCCAATATGATCGAAGGGAG+AGG | + | chr1_3:56990973-56990992 | Msa0127570:intron | 45.0% | |
| CCAATATGATCGAAGGGAGA+GGG | + | chr1_3:56990974-56990993 | Msa0127570:intron | 45.0% | |
| CAATATGATCGAAGGGAGAG+GGG | + | chr1_3:56990975-56990994 | Msa0127570:intron | 45.0% | |
| !! | TTCCCTCACTTTTGGAGATG+AGG | + | chr1_3:56991064-56991083 | Msa0127570:intron | 45.0% |
| TGAGGTAAAATTGGGTCAGG+AGG | + | chr1_3:56991082-56991101 | Msa0127570:intron | 45.0% | |
| GAGGTAAAATTGGGTCAGGA+GGG | + | chr1_3:56991083-56991102 | Msa0127570:intron | 45.0% | |
| TTGGTTGGAGAGAAATGGAG+GGG | - | chr1_3:56991169-56991188 | None:intergenic | 45.0% | |
| GTTTGGTTGGAGAGAAATGG+AGG | - | chr1_3:56991171-56991190 | None:intergenic | 45.0% | |
| GCGTCCCATAGAGTCAATAA+CGG | + | chr1_3:56991376-56991395 | Msa0127570:intron | 45.0% | |
| CGTCCCATAGAGTCAATAAC+GGG | + | chr1_3:56991377-56991396 | Msa0127570:intron | 45.0% | |
| GTCCCATAGAGTCAATAACG+GGG | + | chr1_3:56991378-56991397 | Msa0127570:intron | 45.0% | |
| !! | GTCCCCGTTATTGACTCTAT+GGG | - | chr1_3:56991383-56991402 | None:intergenic | 45.0% |
| !! | AGTCCCCGTTATTGACTCTA+TGG | - | chr1_3:56991384-56991403 | None:intergenic | 45.0% |
| CGTACACCACCATCAAACAT+CGG | - | chr1_3:56991515-56991534 | None:intergenic | 45.0% | |
| GCTGAGCAGGACATAAAACT+GGG | - | chr1_3:56991659-56991678 | None:intergenic | 45.0% | |
| AGCTGAGCAGGACATAAAAC+TGG | - | chr1_3:56991660-56991679 | None:intergenic | 45.0% | |
| CATTGTTTCAGGCTTAGGTC+TGG | + | chr1_3:56991762-56991781 | Msa0127570:intron | 45.0% | |
| TTAGCTCCAACCTCCTAGTA+TGG | + | chr1_3:56991956-56991975 | Msa0127570:intron | 45.0% | |
| AAATGGTCCCAATGAGGCAT+CGG | + | chr1_3:56992301-56992320 | Msa0127570:CDS | 45.0% | |
| AGAAGAGCAAGGTAGGAGAA+GGG | - | chr1_3:56992348-56992367 | None:intergenic | 45.0% | |
| TAGAAGAGCAAGGTAGGAGA+AGG | - | chr1_3:56992349-56992368 | None:intergenic | 45.0% | |
| CCATGTTAGAAGAGCAAGGT+AGG | - | chr1_3:56992355-56992374 | None:intergenic | 45.0% | |
| CCTACCTTGCTCTTCTAACA+TGG | + | chr1_3:56992352-56992371 | Msa0127570:CDS | 45.0% | |
| ! | ACTAGGTAATGGCGCATCAT+CGG | - | chr1_3:56992384-56992403 | None:intergenic | 45.0% |
| ATATCAGCAGCCAGTGAAAC+TGG | + | chr1_3:56992419-56992438 | Msa0127570:CDS | 45.0% | |
| !! | GAATTGTTGACGGGCTTGAT+GGG | - | chr1_3:56992506-56992525 | None:intergenic | 45.0% |
| !! | TGAATTGTTGACGGGCTTGA+TGG | - | chr1_3:56992507-56992526 | None:intergenic | 45.0% |
| ATTACTTGGTTGACTGGTGG+CGG | - | chr1_3:56992531-56992550 | None:intergenic | 45.0% | |
| !! | TGGAAGGTGGATTACTAGGT+TGG | - | chr1_3:56992649-56992668 | None:intergenic | 45.0% |
| GAGACTGTATCAGCAGACAA+TGG | + | chr1_3:56992737-56992756 | Msa0127570:CDS | 45.0% | |
| ! | GGTTGTGAGGACTTTGTTTG+AGG | - | chr1_3:56992863-56992882 | None:intergenic | 45.0% |
| TCAGAAATCCAACCATGGCA+AGG | - | chr1_3:56992917-56992936 | None:intergenic | 45.0% | |
| ! | GATTTCTGATGATGAGGAGG+AGG | + | chr1_3:56992928-56992947 | Msa0127570:CDS | 45.0% |
| AGCCATGCATTCTAGACACA+GGG | - | chr1_3:56993137-56993156 | None:intergenic | 45.0% | |
| AAGCCATGCATTCTAGACAC+AGG | - | chr1_3:56993138-56993157 | None:intergenic | 45.0% | |
| CTATTCGTCAGACCATCGTA+TGG | + | chr1_3:56993170-56993189 | Msa0127570:three_prime_UTR | 45.0% | |
| !! | TTAAATAAAATTAATTAACA+AGG | - | chr1_3:56992784-56992803 | None:intergenic | 5.0% |
| TGGAGCCATTGTTGGAAGGA+AGG | - | chr1_3:56990344-56990363 | None:intergenic | 50.0% | |
| CTCTTGGAGCCATTGTTGGA+AGG | - | chr1_3:56990348-56990367 | None:intergenic | 50.0% | |
| CTTCCAACAATGGCTCCAAG+AGG | + | chr1_3:56990346-56990365 | Msa0127570:exon | 50.0% | |
| AGAACCTTTGGTCGTCCTCT+TGG | - | chr1_3:56990364-56990383 | None:intergenic | 50.0% | |
| CTCGACGCTATGATTCCGTA+TGG | + | chr1_3:56990495-56990514 | Msa0127570:CDS | 50.0% | |
| CCCTCTCCCTTCGATCATAT+TGG | - | chr1_3:56990977-56990996 | None:intergenic | 50.0% | |
| TCCAGGAAATGGTCCCAATG+AGG | + | chr1_3:56992295-56992314 | Msa0127570:CDS | 50.0% | |
| TGATGCGCCATTACCTAGTC+AGG | + | chr1_3:56992385-56992404 | Msa0127570:CDS | 50.0% | |
| CCAACAGCCTGACTAGGTAA+TGG | - | chr1_3:56992395-56992414 | None:intergenic | 50.0% | |
| CCATTACCTAGTCAGGCTGT+TGG | + | chr1_3:56992392-56992411 | Msa0127570:CDS | 50.0% | |
| ATAGTGCCAACAGCCTGACT+AGG | - | chr1_3:56992401-56992420 | None:intergenic | 50.0% | |
| GATGCAGTGTCCACAGTCAT+AGG | - | chr1_3:56992455-56992474 | None:intergenic | 50.0% | |
| TTCAGTGTCTGCGGCCATAA+TGG | - | chr1_3:56992561-56992580 | None:intergenic | 50.0% | |
| ! | GAAGTGTCAACGGGCTTGAT+GGG | - | chr1_3:56992614-56992633 | None:intergenic | 50.0% |
| ! | TGAAGTGTCAACGGGCTTGA+TGG | - | chr1_3:56992615-56992634 | None:intergenic | 50.0% |
| ! | ATTACTAGGTTGGCTGGTGG+CGG | - | chr1_3:56992639-56992658 | None:intergenic | 50.0% |
| ! | TGGATTACTAGGTTGGCTGG+TGG | - | chr1_3:56992642-56992661 | None:intergenic | 50.0% |
| !! | AGGTGGATTACTAGGTTGGC+TGG | - | chr1_3:56992645-56992664 | None:intergenic | 50.0% |
| TACAGTGCCTGCAGCCTTAA+TGG | - | chr1_3:56992669-56992688 | None:intergenic | 50.0% | |
| ! | TTCTGATGATGAGGAGGAGG+AGG | + | chr1_3:56992931-56992950 | Msa0127570:CDS | 50.0% |
| ! | TCTGATGATGAGGAGGAGGA+GGG | + | chr1_3:56992932-56992951 | Msa0127570:CDS | 50.0% |
| ! | TCCCCTGTGTCTAGAATGCA+TGG | + | chr1_3:56993132-56993151 | Msa0127570:three_prime_UTR | 50.0% |
| GCCATGCATTCTAGACACAG+GGG | - | chr1_3:56993136-56993155 | None:intergenic | 50.0% | |
| CGTCCTCTTGGAGCCATTGT+TGG | - | chr1_3:56990352-56990371 | None:intergenic | 55.0% | |
| TATGATCGAAGGGAGAGGGG+AGG | + | chr1_3:56990978-56990997 | Msa0127570:intron | 55.0% | |
| GCCTCATTGGGACCATTTCC+TGG | - | chr1_3:56992299-56992318 | None:intergenic | 55.0% | |
| CCAGAAGCCGATGCCTCATT+GGG | - | chr1_3:56992311-56992330 | None:intergenic | 55.0% | |
| ACCAGAAGCCGATGCCTCAT+TGG | - | chr1_3:56992312-56992331 | None:intergenic | 55.0% | |
| GTGGCGGCTGAATTGTTGAC+GGG | - | chr1_3:56992515-56992534 | None:intergenic | 55.0% | |
| ! | GGTGGCGGCTGAATTGTTGA+CGG | - | chr1_3:56992516-56992535 | None:intergenic | 55.0% |
| ! | CGCAGCTGTTTCAGTGTCTG+CGG | - | chr1_3:56992570-56992589 | None:intergenic | 55.0% |
| !! | GTGGCGGATGAAGTGTCAAC+GGG | - | chr1_3:56992623-56992642 | None:intergenic | 55.0% |
| !! | GGTGGCGGATGAAGTGTCAA+CGG | - | chr1_3:56992624-56992643 | None:intergenic | 55.0% |
| CCTGCAGCCTTAATGGAAGG+TGG | - | chr1_3:56992662-56992681 | None:intergenic | 55.0% | |
| CCACCTTCCATTAAGGCTGC+AGG | + | chr1_3:56992659-56992678 | Msa0127570:CDS | 55.0% | |
| GTGCCTGCAGCCTTAATGGA+AGG | - | chr1_3:56992665-56992684 | None:intergenic | 55.0% | |
| ! | CTGATGATGAGGAGGAGGAG+GGG | + | chr1_3:56992933-56992952 | Msa0127570:CDS | 55.0% |
| ! | TGATGATGAGGAGGAGGAGG+GGG | + | chr1_3:56992934-56992953 | Msa0127570:CDS | 55.0% |
| GGCTCCAAGAGGACGACCAA+AGG | + | chr1_3:56990357-56990376 | Msa0127570:CDS | 60.0% | |
| !! | CCCAATGAGGCATCGGCTTC+TGG | + | chr1_3:56992308-56992327 | Msa0127570:CDS | 60.0% |
| !! | AAGAGGCGTCGACCTTGCCA+TGG | + | chr1_3:56992902-56992921 | Msa0127570:CDS | 60.0% |
| TCGAAGGGAGAGGGGAGGAG+AGG | + | chr1_3:56990983-56991002 | Msa0127570:intron | 65.0% | |
| CGAAGGGAGAGGGGAGGAGA+GGG | + | chr1_3:56990984-56991003 | Msa0127570:intron | 65.0% | |
| !! | GGCGTCGACCTTGCCATGGT+TGG | + | chr1_3:56992906-56992925 | Msa0127570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56990324 | 56993282 | 56990324 | ID=Msa0127570;Name=Msa0127570 |
| chr1_3 | mRNA | 56990324 | 56993282 | 56990324 | ID=Msa0127570-mRNA-1;Parent=Msa0127570;Name=Msa0127570-mRNA-1;_AED=0.04;_eAED=0.04;_QI=31|1|1|1|1|1|5|246|294 |
| chr1_3 | exon | 56990324 | 56990378 | 56990324 | ID=Msa0127570-mRNA-1:exon:18081;Parent=Msa0127570-mRNA-1 |
| chr1_3 | exon | 56990468 | 56990563 | 56990468 | ID=Msa0127570-mRNA-1:exon:18082;Parent=Msa0127570-mRNA-1 |
| chr1_3 | exon | 56990674 | 56990766 | 56990674 | ID=Msa0127570-mRNA-1:exon:18083;Parent=Msa0127570-mRNA-1 |
| chr1_3 | exon | 56992275 | 56992764 | 56992275 | ID=Msa0127570-mRNA-1:exon:18084;Parent=Msa0127570-mRNA-1 |
| chr1_3 | exon | 56992855 | 56993282 | 56992855 | ID=Msa0127570-mRNA-1:exon:18085;Parent=Msa0127570-mRNA-1 |
| chr1_3 | five_prime_UTR | 56990324 | 56990354 | 56990324 | ID=Msa0127570-mRNA-1:five_prime_utr;Parent=Msa0127570-mRNA-1 |
| chr1_3 | CDS | 56990355 | 56990378 | 56990355 | ID=Msa0127570-mRNA-1:cds;Parent=Msa0127570-mRNA-1 |
| chr1_3 | CDS | 56990468 | 56990563 | 56990468 | ID=Msa0127570-mRNA-1:cds;Parent=Msa0127570-mRNA-1 |
| chr1_3 | CDS | 56990674 | 56990766 | 56990674 | ID=Msa0127570-mRNA-1:cds;Parent=Msa0127570-mRNA-1 |
| chr1_3 | CDS | 56992275 | 56992764 | 56992275 | ID=Msa0127570-mRNA-1:cds;Parent=Msa0127570-mRNA-1 |
| chr1_3 | CDS | 56992855 | 56993036 | 56992855 | ID=Msa0127570-mRNA-1:cds;Parent=Msa0127570-mRNA-1 |
| chr1_3 | three_prime_UTR | 56993037 | 56993282 | 56993037 | ID=Msa0127570-mRNA-1:three_prime_utr;Parent=Msa0127570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
