AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184420 MtrunA17_Chr1g0191161 91.582 297 20 2 1 294 1 295 0.0 543
Msa0184420 MtrunA17_Chr1g0210431 66.667 69 20 2 1 66 1 69 7.50e-24 94.0
Msa0184420 MtrunA17_Chr6g0462231 69.697 66 17 2 1 63 1 66 2.33e-22 89.7
Msa0184420 MtrunA17_Chr1g0210451 57.534 73 27 2 1 69 1 73 8.48e-19 79.7
Msa0184420 MtrunA17_Chr5g0436821 54.237 59 25 1 14 70 1 59 1.42e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184420 AT2G40020.2 44.444 72 39 1 1 71 1 72 7.11e-14 68.9
Msa0184420 AT2G40020.3 41.772 79 45 1 1 78 1 79 2.10e-13 68.9

Find 105 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTGCCTGCAGCCTTAA+TGG 0.199764 1_4:+73957489 None:intergenic
CCCAATGAGGCATCGGCTTC+TGG 0.268170 1_4:-73957847 Msa0184420:CDS
TTCAACAACAATACTTGTTT+TGG 0.281297 1_4:-73956962 Msa0184420:three_prime_UTR
AAGTAATCAACTTTCCATTA+TGG 0.288420 1_4:-73957611 Msa0184420:CDS
GCCTCATTGGGACCATTTCC+TGG 0.308455 1_4:+73957859 None:intergenic
ATCTTACTTAGTTAAGTCTT+TGG 0.324559 1_4:-73956893 None:intergenic
GTTTGACGAACGAGTTTGTT+AGG 0.357257 1_4:+73959637 None:intergenic
TAGTAATCCACCTTCCATTA+AGG 0.360557 1_4:-73957503 Msa0184420:CDS
TTCAGTGTCTGCGGCCATAA+TGG 0.365812 1_4:+73957597 None:intergenic
ACAAAGTCCTCACAACCTAT+TGG 0.373795 1_4:-73957289 Msa0184420:CDS
AACTTGGTTGTTAATTTCAT+TGG 0.383404 1_4:+73957459 None:intergenic
ACCAGAAGCCGATGCCTCAT+TGG 0.394264 1_4:+73957846 None:intergenic
ATATCAGCAGCCAGTGAAAC+TGG 0.395050 1_4:-73957736 Msa0184420:CDS
CGTCCTCTTGGAGCCATTGT+TGG 0.401386 1_4:+73959810 None:intergenic
AGAACCTTTGGTCGTCCTCT+TGG 0.406725 1_4:+73959798 None:intergenic
TTCTGATGATGAGGAGGAGG+AGG 0.407593 1_4:-73957224 Msa0184420:CDS
TGTGAAGGATTATTTGATAG+AGG 0.411419 1_4:-73957887 Msa0184420:intron
TTATAATTAAGAAACCAAAA+AGG 0.411471 1_4:+73956916 None:intergenic
TTTAGGTTTATGACGGTAGT+TGG 0.415465 1_4:-73959494 Msa0184420:intron
CTCCAAGGTTTCAGAATGAT+AGG 0.415644 1_4:-73957064 Msa0184420:three_prime_UTR
TGATGATGAGGAGGAGGAGG+GGG 0.417891 1_4:-73957221 Msa0184420:CDS
TTGTGACAAAGCTTTCCAAT+AGG 0.418635 1_4:+73957274 None:intergenic
CACCTATCATTCTGAAACCT+TGG 0.420580 1_4:+73957062 None:intergenic
TTAATGGAAGGTGGATTACT+AGG 0.428557 1_4:+73957505 None:intergenic
TGAAGTGTCAACGGGCTTGA+TGG 0.435421 1_4:+73957543 None:intergenic
GATGCAGTGTCCACAGTCAT+AGG 0.437332 1_4:+73957703 None:intergenic
GTATCAGCAGACAATGGATA+TGG 0.438141 1_4:-73957412 Msa0184420:intron
ATAATGGAAAGTTGATTACT+TGG 0.448544 1_4:+73957613 None:intergenic
CCAGAAGCCGATGCCTCATT+GGG 0.450493 1_4:+73957847 None:intergenic
AGTCTCTATAATAGCCTTGA+TGG 0.450701 1_4:+73957435 None:intergenic
ACAACAACAAAATCAGAATC+AGG 0.455434 1_4:-73959418 Msa0184420:intron
CCTACCTTGCTCTTCTAACA+TGG 0.458449 1_4:-73957803 Msa0184420:CDS
TAATAGCCTTGATGGGAACT+TGG 0.458568 1_4:+73957443 None:intergenic
GCATTGTATAAGCTAGTGAA+TGG 0.460789 1_4:-73957181 Msa0184420:CDS
TGAATTGTTGACGGGCTTGA+TGG 0.462535 1_4:+73957651 None:intergenic
GGTTGTGAGGACTTTGTTTG+AGG 0.464575 1_4:+73957295 None:intergenic
TATTTGATAGAGGGTAATCC+AGG 0.472005 1_4:-73957877 Msa0184420:CDS
ATAGAGGGTAATCCAGGAAA+TGG 0.475064 1_4:-73957871 Msa0184420:CDS
GAAGTGTCAACGGGCTTGAT+GGG 0.477540 1_4:+73957544 None:intergenic
TGATGCGCCATTACCTAGTC+AGG 0.478335 1_4:-73957770 Msa0184420:CDS
TAGAAGAGCAAGGTAGGAGA+AGG 0.482533 1_4:+73957809 None:intergenic
TGGAAGGTGGATTACTAGGT+TGG 0.486413 1_4:+73957509 None:intergenic
TCAAGTAGTGTTTAAAGAGC+AGG 0.489627 1_4:-73957126 Msa0184420:exon
ATTACTTGGTTGACTGGTGG+CGG 0.490984 1_4:+73957627 None:intergenic
GTGGCGGATGAAGTGTCAAC+GGG 0.492498 1_4:+73957535 None:intergenic
AGGTGGATTACTAGGTTGGC+TGG 0.493754 1_4:+73957513 None:intergenic
GGCGTCGACCTTGCCATGGT+TGG 0.493924 1_4:-73957249 Msa0184420:CDS
GTGGCGGCTGAATTGTTGAC+GGG 0.497692 1_4:+73957643 None:intergenic
TCTGATGATGAGGAGGAGGA+GGG 0.499936 1_4:-73957223 Msa0184420:CDS
CTGATGATGAGGAGGAGGAG+GGG 0.502777 1_4:-73957222 Msa0184420:CDS
GGTGGCGGCTGAATTGTTGA+CGG 0.505104 1_4:+73957642 None:intergenic
AAGTTGATTACTTGGTTGAC+TGG 0.515398 1_4:+73957621 None:intergenic
AAGTTGATGACCAGTTTCAC+TGG 0.517162 1_4:+73957726 None:intergenic
CCACCTTCCATTAAGGCTGC+AGG 0.522608 1_4:-73957496 Msa0184420:CDS
TGGAGCCATTGTTGGAAGGA+AGG 0.522675 1_4:+73959818 None:intergenic
ACAGAAAGGTGAGAGGAGAA+TGG 0.528163 1_4:-73959695 Msa0184420:intron
TTCACTAGCTTATACAATGC+AGG 0.529881 1_4:+73957184 None:intergenic
ATTACTAGGTTGGCTGGTGG+CGG 0.531150 1_4:+73957519 None:intergenic
GATTTCTGATGATGAGGAGG+AGG 0.533613 1_4:-73957227 Msa0184420:CDS
CATTGTATAAGCTAGTGAAT+GGG 0.534796 1_4:-73957180 Msa0184420:CDS
GAATTGTTGACGGGCTTGAT+GGG 0.535292 1_4:+73957652 None:intergenic
TCCCCTGTGTCTAGAATGCA+TGG 0.535848 1_4:-73957023 Msa0184420:three_prime_UTR
CCATGTTAGAAGAGCAAGGT+AGG 0.538702 1_4:+73957803 None:intergenic
ACTAGGTAATGGCGCATCAT+CGG 0.541244 1_4:+73957774 None:intergenic
GTTGTATCAGATTAGCTCCA+AGG 0.542792 1_4:-73957079 Msa0184420:three_prime_UTR
CCAACAGCCTGACTAGGTAA+TGG 0.545720 1_4:+73957763 None:intergenic
CTCTTGGAGCCATTGTTGGA+AGG 0.547511 1_4:+73959814 None:intergenic
TACTTTGAGCAATTGATCAA+CGG 0.547765 1_4:+73959615 None:intergenic
GTGAAGGATTATTTGATAGA+GGG 0.553277 1_4:-73957886 Msa0184420:intron
CCATTACCTAGTCAGGCTGT+TGG 0.557254 1_4:-73957763 Msa0184420:CDS
GTCTCTATAATAGCCTTGAT+GGG 0.560227 1_4:+73957436 None:intergenic
GGTGGCGGATGAAGTGTCAA+CGG 0.562818 1_4:+73957534 None:intergenic
TAACAACCAAGTTCCCATCA+AGG 0.571507 1_4:-73957449 Msa0184420:CDS
AAATGGTCCCAATGAGGCAT+CGG 0.576176 1_4:-73957854 Msa0184420:CDS
TCTCACCTTCCTTCCAACAA+TGG 0.578264 1_4:-73959823 Msa0184420:exon
TTGGAAAGCTTTGTCACAAG+AGG 0.581164 1_4:-73957270 Msa0184420:CDS
GTGCCTGCAGCCTTAATGGA+AGG 0.583698 1_4:+73957493 None:intergenic
GGCTCCAAGAGGACGACCAA+AGG 0.596610 1_4:-73959802 Msa0184420:intron
CGCAGCTGTTTCAGTGTCTG+CGG 0.598889 1_4:+73957588 None:intergenic
ATTTGTGTTTAGGTTTATGA+CGG 0.600074 1_4:-73959501 Msa0184420:intron
AAGCCATGCATTCTAGACAC+AGG 0.600296 1_4:+73957020 None:intergenic
TCATCAACTTCCTATGACTG+TGG 0.601873 1_4:-73957713 Msa0184420:CDS
CTCGACGCTATGATTCCGTA+TGG 0.602511 1_4:-73959664 Msa0184420:CDS
ATAGTGCCAACAGCCTGACT+AGG 0.610418 1_4:+73957757 None:intergenic
AGAAGAGCAAGGTAGGAGAA+GGG 0.615751 1_4:+73957810 None:intergenic
AAGCTTTCCAATAGGTTGTG+AGG 0.617381 1_4:+73957282 None:intergenic
CCTGCAGCCTTAATGGAAGG+TGG 0.618279 1_4:+73957496 None:intergenic
TCATTTCACAGAAAGGTGAG+AGG 0.619282 1_4:-73959702 Msa0184420:intron
AGCCATGCATTCTAGACACA+GGG 0.619972 1_4:+73957021 None:intergenic
AAGAGGCGTCGACCTTGCCA+TGG 0.621523 1_4:-73957253 Msa0184420:CDS
TGGTTGGATTTCTGATGATG+AGG 0.621548 1_4:-73957233 Msa0184420:CDS
TCAGAAATCCAACCATGGCA+AGG 0.623253 1_4:+73957241 None:intergenic
GAGACTGTATCAGCAGACAA+TGG 0.637329 1_4:-73957418 Msa0184420:CDS
ATGTCCATGTTAGAAGAGCA+AGG 0.642571 1_4:+73957799 None:intergenic
CTATTCGTCAGACCATCGTA+TGG 0.644114 1_4:-73956985 Msa0184420:three_prime_UTR
TGGATTACTAGGTTGGCTGG+TGG 0.645107 1_4:+73957516 None:intergenic
TTGGATTTCTGATGATGAGG+AGG 0.658696 1_4:-73957230 Msa0184420:CDS
TCCAGGAAATGGTCCCAATG+AGG 0.658956 1_4:-73957860 Msa0184420:CDS
AGTTTGTTAGGAAAACCATA+CGG 0.668712 1_4:+73959649 None:intergenic
TTGATTACTTGGTTGACTGG+TGG 0.672311 1_4:+73957624 None:intergenic
ATTGTTGTTGAACCATACGA+TGG 0.676013 1_4:+73956973 None:intergenic
CTTCCAACAATGGCTCCAAG+AGG 0.677805 1_4:-73959813 Msa0184420:exon
CATCATCAGAAATCCAACCA+TGG 0.680406 1_4:+73957236 None:intergenic
ATTGTATAAGCTAGTGAATG+GGG 0.723488 1_4:-73957179 Msa0184420:CDS
GCCATGCATTCTAGACACAG+GGG 0.743557 1_4:+73957022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATCATATTATTAAATTAA+AGG - chr1_4:73957580-73957599 Msa0184420:CDS 10.0%
!! TTAAGAACAAAAATTAATAT+TGG - chr1_4:73957823-73957842 Msa0184420:CDS 10.0%
!! AGAAATGAAGAAAATAAAAA+TGG + chr1_4:73956990-73957009 None:intergenic 15.0%
!! TCAATTATTGATATAATTTG+TGG - chr1_4:73957423-73957442 Msa0184420:CDS 15.0%
!!! CAATTATTGATATAATTTGT+GGG - chr1_4:73957424-73957443 Msa0184420:CDS 15.0%
!!! AATTATTGATATAATTTGTG+GGG - chr1_4:73957425-73957444 Msa0184420:CDS 15.0%
!! TTCATTAAGTAGTAATTTAA+GGG + chr1_4:73957764-73957783 None:intergenic 15.0%
!! TTTCATTAAGTAGTAATTTA+AGG + chr1_4:73957765-73957784 None:intergenic 15.0%
!! TTAATTAACTGTTCTATTAA+AGG + chr1_4:73957807-73957826 None:intergenic 15.0%
!! TACAATGAGAAATATATTTA+TGG - chr1_4:73957881-73957900 Msa0184420:CDS 15.0%
!! AAAAGATAAAGAAATTTCAT+TGG + chr1_4:73958633-73958652 None:intergenic 15.0%
!!! TATAGAATTTTGACTAATAA+TGG - chr1_4:73958798-73958817 Msa0184420:intron 15.0%
!!! TTTTACTATATAAACCTTTT+TGG - chr1_4:73959800-73959819 Msa0184420:intron 15.0%
!! TTATAATTAAGAAACCAAAA+AGG + chr1_4:73959817-73959836 None:intergenic 15.0%
!! AATGAAGAAAATAAAAATGG+TGG + chr1_4:73956987-73957006 None:intergenic 20.0%
!!! TATCTTAAATTTGAGTTGTT+TGG + chr1_4:73957707-73957726 None:intergenic 20.0%
!!! TCAGTATTTTGTTTATGTTA+TGG - chr1_4:73958278-73958297 Msa0184420:intron 20.0%
!!! CAGTATTTTGTTTATGTTAT+GGG - chr1_4:73958279-73958298 Msa0184420:intron 20.0%
!! ATTGAAACAAATACTGAATT+TGG + chr1_4:73958372-73958391 None:intergenic 20.0%
!!! TTTCAATTTATGTTGATAGA+GGG - chr1_4:73958385-73958404 Msa0184420:intron 20.0%
!! CAAAATTCTTTATGATATAC+AGG + chr1_4:73958704-73958723 None:intergenic 20.0%
! GTGGAAATGAAATATGAATT+AGG + chr1_4:73956968-73956987 None:intergenic 25.0%
! TTTCATTTCATTTCACAGAA+AGG - chr1_4:73957021-73957040 Msa0184420:three_prime_UTR 25.0%
! GAAAATGAAACGAAATTAGA+AGG + chr1_4:73957180-73957199 None:intergenic 25.0%
!!! ACAATGCTTAATTTGTGTTT+AGG - chr1_4:73957219-73957238 Msa0184420:CDS 25.0%
!! ATTTGTGTTTAGGTTTATGA+CGG - chr1_4:73957229-73957248 Msa0184420:CDS 25.0%
! TTGTTTATTATGCTTTGCTT+GGG + chr1_4:73957366-73957385 None:intergenic 25.0%
! ATTGTTTATTATGCTTTGCT+TGG + chr1_4:73957367-73957386 None:intergenic 25.0%
!! TTTGGTTCAATTATTTGAAG+GGG + chr1_4:73957689-73957708 None:intergenic 25.0%
!! GTTTGGTTCAATTATTTGAA+GGG + chr1_4:73957690-73957709 None:intergenic 25.0%
!! TGTTTGGTTCAATTATTTGA+AGG + chr1_4:73957691-73957710 None:intergenic 25.0%
! TATTTAACTACTCGTATAGT+AGG - chr1_4:73958131-73958150 Msa0184420:intron 25.0%
!! GTTTCAATTTATGTTGATAG+AGG - chr1_4:73958384-73958403 Msa0184420:intron 25.0%
!! ATAATGGAAAGTTGATTACT+TGG + chr1_4:73959120-73959139 None:intergenic 25.0%
! AAGTAATCAACTTTCCATTA+TGG - chr1_4:73959119-73959138 Msa0184420:intron 25.0%
! AACTTGGTTGTTAATTTCAT+TGG + chr1_4:73959274-73959293 None:intergenic 25.0%
!!! TTCACTAGCTTTTTTTTCAT+GGG + chr1_4:73959579-73959598 None:intergenic 25.0%
!!! ATTCACTAGCTTTTTTTTCA+TGG + chr1_4:73959580-73959599 None:intergenic 25.0%
! ATGAAAAAAAAGCTAGTGAA+TGG - chr1_4:73959579-73959598 Msa0184420:intron 25.0%
!! TTCAACAACAATACTTGTTT+TGG - chr1_4:73959768-73959787 Msa0184420:intron 25.0%
!! AGTTTGTTAGGAAAACCATA+CGG + chr1_4:73957084-73957103 None:intergenic 30.0%
TACTTTGAGCAATTGATCAA+CGG + chr1_4:73957118-73957137 None:intergenic 30.0%
GAAATTAGAAGGTAATAACG+AGG + chr1_4:73957169-73957188 None:intergenic 30.0%
ACAACAACAAAATCAGAATC+AGG - chr1_4:73957312-73957331 Msa0184420:intron 30.0%
TGTTTATTATGCTTTGCTTG+GGG + chr1_4:73957365-73957384 None:intergenic 30.0%
ATTGACAGATGTTAGTAGTT+AGG - chr1_4:73957483-73957502 Msa0184420:CDS 30.0%
TTGACAGATGTTAGTAGTTA+GGG - chr1_4:73957484-73957503 Msa0184420:CDS 30.0%
ACAAAATCCAATATGATCGA+AGG - chr1_4:73957534-73957553 Msa0184420:CDS 30.0%
CAAAATCCAATATGATCGAA+GGG - chr1_4:73957535-73957554 Msa0184420:CDS 30.0%
! AACAAATATTCCCTCACTTT+TGG - chr1_4:73957623-73957642 Msa0184420:CDS 30.0%
!! TTTTGGAGATGAGGTAAAAT+TGG - chr1_4:73957640-73957659 Msa0184420:CDS 30.0%
TTTGGAGATGAGGTAAAATT+GGG - chr1_4:73957641-73957660 Msa0184420:CDS 30.0%
! TAGTAATTTAAGGGTGTGTT+TGG + chr1_4:73957755-73957774 None:intergenic 30.0%
ATTTGTAACTGTGTAAGAGA+TGG - chr1_4:73957921-73957940 Msa0184420:intron 30.0%
GACTTATACCTCATGTATAA+TGG - chr1_4:73957967-73957986 Msa0184420:intron 30.0%
TAATCACACCATTATACATG+AGG + chr1_4:73957978-73957997 None:intergenic 30.0%
AGACATCTGTAACTTGAAAA+GGG + chr1_4:73958026-73958045 None:intergenic 30.0%
AAGACATCTGTAACTTGAAA+AGG + chr1_4:73958027-73958046 None:intergenic 30.0%
GTACGTTAATCATTACGATT+TGG - chr1_4:73958097-73958116 Msa0184420:intron 30.0%
GGATTGCAAATTAGCAAATT+GGG + chr1_4:73958169-73958188 None:intergenic 30.0%
AGGATTGCAAATTAGCAAAT+TGG + chr1_4:73958170-73958189 None:intergenic 30.0%
GTATATCTTGAATTCCTTCA+TGG - chr1_4:73958437-73958456 Msa0184420:intron 30.0%
TGAAAAAGAAGAAACCATGA+AGG + chr1_4:73958454-73958473 None:intergenic 30.0%
! ACATGTTGATTAACCATACT+AGG + chr1_4:73958539-73958558 None:intergenic 30.0%
!!! CTATTTTAACAATGCTTGAG+AGG - chr1_4:73958582-73958601 Msa0184420:intron 30.0%
ATATACAGGCCATTAGATTA+AGG + chr1_4:73958690-73958709 None:intergenic 30.0%
TGTGAAGGATTATTTGATAG+AGG - chr1_4:73958843-73958862 Msa0184420:intron 30.0%
GTGAAGGATTATTTGATAGA+GGG - chr1_4:73958844-73958863 Msa0184420:intron 30.0%
CATTGTATAAGCTAGTGAAT+GGG - chr1_4:73959550-73959569 Msa0184420:intron 30.0%
ATTGTATAAGCTAGTGAATG+GGG - chr1_4:73959551-73959570 Msa0184420:intron 30.0%
AGGTAATAACGAGGATTAAG+CGG + chr1_4:73957160-73957179 None:intergenic 35.0%
! TTTAGGTTTATGACGGTAGT+TGG - chr1_4:73957236-73957255 Msa0184420:CDS 35.0%
GTTTATTATGCTTTGCTTGG+GGG + chr1_4:73957364-73957383 None:intergenic 35.0%
! AATTTAAGGGTGTGTTTGGT+TGG + chr1_4:73957751-73957770 None:intergenic 35.0%
!! CATTACGATTTGGTTGTTGT+TGG - chr1_4:73958107-73958126 Msa0184420:intron 35.0%
AGTGTAACAACAGACAAAAG+AGG + chr1_4:73958190-73958209 None:intergenic 35.0%
! TGTTGATTAACCATACTAGG+AGG + chr1_4:73958536-73958555 None:intergenic 35.0%
TTAGATTAAGGAGCTAGTAG+AGG + chr1_4:73958678-73958697 None:intergenic 35.0%
CTACTAGCTCCTTAATCTAA+TGG - chr1_4:73958678-73958697 Msa0184420:intron 35.0%
ATACGATACACAGACAAAAC+AGG + chr1_4:73958738-73958757 None:intergenic 35.0%
ATACGATATACAGACAGAAC+AGG + chr1_4:73958781-73958800 None:intergenic 35.0%
TCTTGTATTGCTATGTGTGA+AGG - chr1_4:73958828-73958847 Msa0184420:intron 35.0%
TATTTGATAGAGGGTAATCC+AGG - chr1_4:73958853-73958872 Msa0184420:intron 35.0%
! AAGTTGATTACTTGGTTGAC+TGG + chr1_4:73959112-73959131 None:intergenic 35.0%
!! TTAATGGAAGGTGGATTACT+AGG + chr1_4:73959228-73959247 None:intergenic 35.0%
TAGTAATCCACCTTCCATTA+AGG - chr1_4:73959227-73959246 Msa0184420:intron 35.0%
! GTCTCTATAATAGCCTTGAT+GGG + chr1_4:73959297-73959316 None:intergenic 35.0%
! AGTCTCTATAATAGCCTTGA+TGG + chr1_4:73959298-73959317 None:intergenic 35.0%
TTTGAGGAATTTCTGCAAGA+AGG + chr1_4:73959422-73959441 None:intergenic 35.0%
TTGTGACAAAGCTTTCCAAT+AGG + chr1_4:73959459-73959478 None:intergenic 35.0%
! TTCACTAGCTTATACAATGC+AGG + chr1_4:73959549-73959568 None:intergenic 35.0%
GCATTGTATAAGCTAGTGAA+TGG - chr1_4:73959549-73959568 Msa0184420:intron 35.0%
TCAAGTAGTGTTTAAAGAGC+AGG - chr1_4:73959604-73959623 Msa0184420:intron 35.0%
! ATTGTTGTTGAACCATACGA+TGG + chr1_4:73959760-73959779 None:intergenic 35.0%
GGTGAATGTGAAAGAACCTT+TGG + chr1_4:73956947-73956966 None:intergenic 40.0%
TCATTTCACAGAAAGGTGAG+AGG - chr1_4:73957028-73957047 Msa0184420:three_prime_UTR 40.0%
! GTTTGACGAACGAGTTTGTT+AGG + chr1_4:73957096-73957115 None:intergenic 40.0%
TACCTCATCTCCAAAAGTGA+GGG + chr1_4:73957636-73957655 None:intergenic 40.0%
TTACCTCATCTCCAAAAGTG+AGG + chr1_4:73957637-73957656 None:intergenic 40.0%
AGATGAGGTAAAATTGGGTC+AGG - chr1_4:73957646-73957665 Msa0184420:CDS 40.0%
TTTGGTTGGAGAGAAATGGA+GGG + chr1_4:73957737-73957756 None:intergenic 40.0%
TGTGTTTGGTTGGAGAGAAA+TGG + chr1_4:73957741-73957760 None:intergenic 40.0%
GCAAATTGACCGATGTTTGA+TGG - chr1_4:73958070-73958089 Msa0184420:intron 40.0%
AATTGACCGATGTTTGATGG+TGG - chr1_4:73958073-73958092 Msa0184420:intron 40.0%
AATCATAACTTGAGCTGAGC+AGG + chr1_4:73958239-73958258 None:intergenic 40.0%
CCTGAAACAATGTAGGACAT+TGG + chr1_4:73958321-73958340 None:intergenic 40.0%
CCAATGTCCTACATTGTTTC+AGG - chr1_4:73958318-73958337 Msa0184420:intron 40.0%
TCCTACATTGTTTCAGGCTT+AGG - chr1_4:73958324-73958343 Msa0184420:intron 40.0%
ACCTAAGCCTGAAACAATGT+AGG + chr1_4:73958328-73958347 None:intergenic 40.0%
GATTAACCATACTAGGAGGT+TGG + chr1_4:73958532-73958551 None:intergenic 40.0%
! GCTAGTAGAGGATTTTCATG+AGG + chr1_4:73958666-73958685 None:intergenic 40.0%
ATAGAGGGTAATCCAGGAAA+TGG - chr1_4:73958859-73958878 Msa0184420:intron 40.0%
ATGTCCATGTTAGAAGAGCA+AGG + chr1_4:73958934-73958953 None:intergenic 40.0%
!! AAGTTGATGACCAGTTTCAC+TGG + chr1_4:73959007-73959026 None:intergenic 40.0%
TCATCAACTTCCTATGACTG+TGG - chr1_4:73959017-73959036 Msa0184420:intron 40.0%
TTGATTACTTGGTTGACTGG+TGG + chr1_4:73959109-73959128 None:intergenic 40.0%
TAACAACCAAGTTCCCATCA+AGG - chr1_4:73959281-73959300 Msa0184420:intron 40.0%
! TAATAGCCTTGATGGGAACT+TGG + chr1_4:73959290-73959309 None:intergenic 40.0%
GTATCAGCAGACAATGGATA+TGG - chr1_4:73959318-73959337 Msa0184420:intron 40.0%
ACAAAGTCCTCACAACCTAT+TGG - chr1_4:73959441-73959460 Msa0184420:CDS 40.0%
AAGCTTTCCAATAGGTTGTG+AGG + chr1_4:73959451-73959470 None:intergenic 40.0%
! TTGGAAAGCTTTGTCACAAG+AGG - chr1_4:73959460-73959479 Msa0184420:CDS 40.0%
CATCATCAGAAATCCAACCA+TGG + chr1_4:73959497-73959516 None:intergenic 40.0%
! TGGTTGGATTTCTGATGATG+AGG - chr1_4:73959497-73959516 Msa0184420:intron 40.0%
! TTGGATTTCTGATGATGAGG+AGG - chr1_4:73959500-73959519 Msa0184420:intron 40.0%
! GTTGTATCAGATTAGCTCCA+AGG - chr1_4:73959651-73959670 Msa0184420:CDS 40.0%
CTCCAAGGTTTCAGAATGAT+AGG - chr1_4:73959666-73959685 Msa0184420:CDS 40.0%
!! CACCTATCATTCTGAAACCT+TGG + chr1_4:73959671-73959690 None:intergenic 40.0%
TCTCACCTTCCTTCCAACAA+TGG - chr1_4:73956907-73956926 Msa0184420:three_prime_UTR 45.0%
ACAGAAAGGTGAGAGGAGAA+TGG - chr1_4:73957035-73957054 Msa0184420:three_prime_UTR 45.0%
TCCAATATGATCGAAGGGAG+AGG - chr1_4:73957540-73957559 Msa0184420:CDS 45.0%
CCAATATGATCGAAGGGAGA+GGG - chr1_4:73957541-73957560 Msa0184420:CDS 45.0%
CAATATGATCGAAGGGAGAG+GGG - chr1_4:73957542-73957561 Msa0184420:CDS 45.0%
!! TTCCCTCACTTTTGGAGATG+AGG - chr1_4:73957631-73957650 Msa0184420:CDS 45.0%
TGAGGTAAAATTGGGTCAGG+AGG - chr1_4:73957649-73957668 Msa0184420:CDS 45.0%
GAGGTAAAATTGGGTCAGGA+GGG - chr1_4:73957650-73957669 Msa0184420:CDS 45.0%
TTGGTTGGAGAGAAATGGAG+GGG + chr1_4:73957736-73957755 None:intergenic 45.0%
GTTTGGTTGGAGAGAAATGG+AGG + chr1_4:73957738-73957757 None:intergenic 45.0%
GCGTCCCATAGAGTCAATAA+CGG - chr1_4:73957943-73957962 Msa0184420:intron 45.0%
CGTCCCATAGAGTCAATAAC+GGG - chr1_4:73957944-73957963 Msa0184420:intron 45.0%
GTCCCATAGAGTCAATAACG+GGG - chr1_4:73957945-73957964 Msa0184420:intron 45.0%
!! GTCCCCGTTATTGACTCTAT+GGG + chr1_4:73957950-73957969 None:intergenic 45.0%
!! AGTCCCCGTTATTGACTCTA+TGG + chr1_4:73957951-73957970 None:intergenic 45.0%
CGTACACCACCATCAAACAT+CGG + chr1_4:73958082-73958101 None:intergenic 45.0%
GCTGAGCAGGACATAAAACT+GGG + chr1_4:73958226-73958245 None:intergenic 45.0%
AGCTGAGCAGGACATAAAAC+TGG + chr1_4:73958227-73958246 None:intergenic 45.0%
CATTGTTTCAGGCTTAGGTC+TGG - chr1_4:73958329-73958348 Msa0184420:intron 45.0%
TTAGCTCCAACCTCCTAGTA+TGG - chr1_4:73958523-73958542 Msa0184420:intron 45.0%
AAATGGTCCCAATGAGGCAT+CGG - chr1_4:73958876-73958895 Msa0184420:intron 45.0%
AGAAGAGCAAGGTAGGAGAA+GGG + chr1_4:73958923-73958942 None:intergenic 45.0%
TAGAAGAGCAAGGTAGGAGA+AGG + chr1_4:73958924-73958943 None:intergenic 45.0%
CCATGTTAGAAGAGCAAGGT+AGG + chr1_4:73958930-73958949 None:intergenic 45.0%
CCTACCTTGCTCTTCTAACA+TGG - chr1_4:73958927-73958946 Msa0184420:intron 45.0%
! ACTAGGTAATGGCGCATCAT+CGG + chr1_4:73958959-73958978 None:intergenic 45.0%
ATATCAGCAGCCAGTGAAAC+TGG - chr1_4:73958994-73959013 Msa0184420:intron 45.0%
!! GAATTGTTGACGGGCTTGAT+GGG + chr1_4:73959081-73959100 None:intergenic 45.0%
!! TGAATTGTTGACGGGCTTGA+TGG + chr1_4:73959082-73959101 None:intergenic 45.0%
ATTACTTGGTTGACTGGTGG+CGG + chr1_4:73959106-73959125 None:intergenic 45.0%
!! TGGAAGGTGGATTACTAGGT+TGG + chr1_4:73959224-73959243 None:intergenic 45.0%
GAGACTGTATCAGCAGACAA+TGG - chr1_4:73959312-73959331 Msa0184420:intron 45.0%
! GGTTGTGAGGACTTTGTTTG+AGG + chr1_4:73959438-73959457 None:intergenic 45.0%
TCAGAAATCCAACCATGGCA+AGG + chr1_4:73959492-73959511 None:intergenic 45.0%
! GATTTCTGATGATGAGGAGG+AGG - chr1_4:73959503-73959522 Msa0184420:intron 45.0%
AGCCATGCATTCTAGACACA+GGG + chr1_4:73959712-73959731 None:intergenic 45.0%
AAGCCATGCATTCTAGACAC+AGG + chr1_4:73959713-73959732 None:intergenic 45.0%
CTATTCGTCAGACCATCGTA+TGG - chr1_4:73959745-73959764 Msa0184420:intron 45.0%
!! TTAAATAAAATTAATTAACA+AGG + chr1_4:73959359-73959378 None:intergenic 5.0%
TGGAGCCATTGTTGGAAGGA+AGG + chr1_4:73956915-73956934 None:intergenic 50.0%
CTCTTGGAGCCATTGTTGGA+AGG + chr1_4:73956919-73956938 None:intergenic 50.0%
CTTCCAACAATGGCTCCAAG+AGG - chr1_4:73956917-73956936 Msa0184420:three_prime_UTR 50.0%
AGAACCTTTGGTCGTCCTCT+TGG + chr1_4:73956935-73956954 None:intergenic 50.0%
CTCGACGCTATGATTCCGTA+TGG - chr1_4:73957066-73957085 Msa0184420:three_prime_UTR 50.0%
CCCTCTCCCTTCGATCATAT+TGG + chr1_4:73957544-73957563 None:intergenic 50.0%
TCCAGGAAATGGTCCCAATG+AGG - chr1_4:73958870-73958889 Msa0184420:intron 50.0%
TGATGCGCCATTACCTAGTC+AGG - chr1_4:73958960-73958979 Msa0184420:intron 50.0%
CCAACAGCCTGACTAGGTAA+TGG + chr1_4:73958970-73958989 None:intergenic 50.0%
CCATTACCTAGTCAGGCTGT+TGG - chr1_4:73958967-73958986 Msa0184420:intron 50.0%
ATAGTGCCAACAGCCTGACT+AGG + chr1_4:73958976-73958995 None:intergenic 50.0%
GATGCAGTGTCCACAGTCAT+AGG + chr1_4:73959030-73959049 None:intergenic 50.0%
TTCAGTGTCTGCGGCCATAA+TGG + chr1_4:73959136-73959155 None:intergenic 50.0%
! GAAGTGTCAACGGGCTTGAT+GGG + chr1_4:73959189-73959208 None:intergenic 50.0%
! TGAAGTGTCAACGGGCTTGA+TGG + chr1_4:73959190-73959209 None:intergenic 50.0%
! ATTACTAGGTTGGCTGGTGG+CGG + chr1_4:73959214-73959233 None:intergenic 50.0%
! TGGATTACTAGGTTGGCTGG+TGG + chr1_4:73959217-73959236 None:intergenic 50.0%
!! AGGTGGATTACTAGGTTGGC+TGG + chr1_4:73959220-73959239 None:intergenic 50.0%
TACAGTGCCTGCAGCCTTAA+TGG + chr1_4:73959244-73959263 None:intergenic 50.0%
! TTCTGATGATGAGGAGGAGG+AGG - chr1_4:73959506-73959525 Msa0184420:intron 50.0%
! TCTGATGATGAGGAGGAGGA+GGG - chr1_4:73959507-73959526 Msa0184420:intron 50.0%
! TCCCCTGTGTCTAGAATGCA+TGG - chr1_4:73959707-73959726 Msa0184420:intron 50.0%
GCCATGCATTCTAGACACAG+GGG + chr1_4:73959711-73959730 None:intergenic 50.0%
CGTCCTCTTGGAGCCATTGT+TGG + chr1_4:73956923-73956942 None:intergenic 55.0%
TATGATCGAAGGGAGAGGGG+AGG - chr1_4:73957545-73957564 Msa0184420:CDS 55.0%
GCCTCATTGGGACCATTTCC+TGG + chr1_4:73958874-73958893 None:intergenic 55.0%
CCAGAAGCCGATGCCTCATT+GGG + chr1_4:73958886-73958905 None:intergenic 55.0%
ACCAGAAGCCGATGCCTCAT+TGG + chr1_4:73958887-73958906 None:intergenic 55.0%
GTGGCGGCTGAATTGTTGAC+GGG + chr1_4:73959090-73959109 None:intergenic 55.0%
! GGTGGCGGCTGAATTGTTGA+CGG + chr1_4:73959091-73959110 None:intergenic 55.0%
! CGCAGCTGTTTCAGTGTCTG+CGG + chr1_4:73959145-73959164 None:intergenic 55.0%
!! GTGGCGGATGAAGTGTCAAC+GGG + chr1_4:73959198-73959217 None:intergenic 55.0%
!! GGTGGCGGATGAAGTGTCAA+CGG + chr1_4:73959199-73959218 None:intergenic 55.0%
CCTGCAGCCTTAATGGAAGG+TGG + chr1_4:73959237-73959256 None:intergenic 55.0%
CCACCTTCCATTAAGGCTGC+AGG - chr1_4:73959234-73959253 Msa0184420:intron 55.0%
GTGCCTGCAGCCTTAATGGA+AGG + chr1_4:73959240-73959259 None:intergenic 55.0%
! CTGATGATGAGGAGGAGGAG+GGG - chr1_4:73959508-73959527 Msa0184420:intron 55.0%
! TGATGATGAGGAGGAGGAGG+GGG - chr1_4:73959509-73959528 Msa0184420:intron 55.0%
GGCTCCAAGAGGACGACCAA+AGG - chr1_4:73956928-73956947 Msa0184420:three_prime_UTR 60.0%
!! CCCAATGAGGCATCGGCTTC+TGG - chr1_4:73958883-73958902 Msa0184420:intron 60.0%
!! AAGAGGCGTCGACCTTGCCA+TGG - chr1_4:73959477-73959496 Msa0184420:CDS 60.0%
TCGAAGGGAGAGGGGAGGAG+AGG - chr1_4:73957550-73957569 Msa0184420:CDS 65.0%
CGAAGGGAGAGGGGAGGAGA+GGG - chr1_4:73957551-73957570 Msa0184420:CDS 65.0%
!! GGCGTCGACCTTGCCATGGT+TGG - chr1_4:73959481-73959500 Msa0184420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 73956895 73959857 73956895 ID=Msa0184420;Name=Msa0184420
chr1_4 mRNA 73956895 73959857 73956895 ID=Msa0184420-mRNA-1;Parent=Msa0184420;Name=Msa0184420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=31|1|1|1|1|1|5|246|294
chr1_4 exon 73956895 73957322 73956895 ID=Msa0184420-mRNA-1:exon:25200;Parent=Msa0184420-mRNA-1
chr1_4 exon 73957413 73957902 73957413 ID=Msa0184420-mRNA-1:exon:25199;Parent=Msa0184420-mRNA-1
chr1_4 exon 73959419 73959511 73959419 ID=Msa0184420-mRNA-1:exon:25198;Parent=Msa0184420-mRNA-1
chr1_4 exon 73959618 73959713 73959618 ID=Msa0184420-mRNA-1:exon:25197;Parent=Msa0184420-mRNA-1
chr1_4 exon 73959803 73959857 73959803 ID=Msa0184420-mRNA-1:exon:25196;Parent=Msa0184420-mRNA-1
chr1_4 five_prime_UTR 73959827 73959857 73959827 ID=Msa0184420-mRNA-1:five_prime_utr;Parent=Msa0184420-mRNA-1
chr1_4 CDS 73959803 73959826 73959803 ID=Msa0184420-mRNA-1:cds;Parent=Msa0184420-mRNA-1
chr1_4 CDS 73959618 73959713 73959618 ID=Msa0184420-mRNA-1:cds;Parent=Msa0184420-mRNA-1
chr1_4 CDS 73959419 73959511 73959419 ID=Msa0184420-mRNA-1:cds;Parent=Msa0184420-mRNA-1
chr1_4 CDS 73957413 73957902 73957413 ID=Msa0184420-mRNA-1:cds;Parent=Msa0184420-mRNA-1
chr1_4 CDS 73957141 73957322 73957141 ID=Msa0184420-mRNA-1:cds;Parent=Msa0184420-mRNA-1
chr1_4 three_prime_UTR 73956895 73957140 73956895 ID=Msa0184420-mRNA-1:three_prime_utr;Parent=Msa0184420-mRNA-1
Gene Sequence

>Msa0184420

ATGGCTCCAAGAGGACGACCAAAGAAAGGTGAGAGGAGAATGGACGCAGCTCTCGACGCTATGATTCCGTATGGTTTTCCTAACAAACTCGTTCGTCAAACCGTTGATCAATTGCTCAAAGTTTATGACGGTAGTTGGTTTTTCATTGAAGAATCTGCTTATACTCTTCTCATTGATACTATTCTTGAAAAACAACAACAAAATCAGAATCAGGATTATTTGATAGAGGGTAATCCAGGAAATGGTCCCAATGAGGCATCGGCTTCTGGTTGCTCAAACAGAACCCTTCTCCTACCTTGCTCTTCTAACATGGACATGTCCGATGATGCGCCATTACCTAGTCAGGCTGTTGGCACTATATCAGCAGCCAGTGAAACTGGTCATCAACTTCCTATGACTGTGGACACTGCATCAGCTACAAGCAAAGCTGTTATTGAGCTTCCCATCAAGCCCGTCAACAATTCAGCCGCCACCAGTCAACCAAGTAATCAACTTTCCATTATGGCCGCAGACACTGAAACAGCTGCGAGCAAAACTGTTAATGAACGTCCCATCAAGCCCGTTGACACTTCATCCGCCACCAGCCAACCTAGTAATCCACCTTCCATTAAGGCTGCAGGCACTGTATCTGCAACCAATGAAATTAACAACCAAGTTCCCATCAAGGCTATTATAGAGACTGTATCAGCAGACAATGGATATGAAATTCCTCAAACAAAGTCCTCACAACCTATTGGAAAGCTTTGTCACAAGAGGCGTCGACCTTGCCATGGTTGGATTTCTGATGATGAGGAGGAGGAGGGGGAGTTAATAGAACTACCTGCATTGTATAAGCTAGTGAATGGGGTGCCCATGAAAAAAAAGCTAGTGAATGGAGTCAAGTAG

Protein sequence

>Msa0184420

MAPRGRPKKGERRMDAALDAMIPYGFPNKLVRQTVDQLLKVYDGSWFFIEESAYTLLIDTILEKQQQNQNQDYLIEGNPGNGPNEASASGCSNRTLLLPCSSNMDMSDDAPLPSQAVGTISAASETGHQLPMTVDTASATSKAVIELPIKPVNNSAATSQPSNQLSIMAADTETAASKTVNERPIKPVDTSSATSQPSNPPSIKAAGTVSATNEINNQVPIKAIIETVSADNGYEIPQTKSSQPIGKLCHKRRRPCHGWISDDEEEEGELIELPALYKLVNGVPMKKKLVNGVK*