AlfalfaGEDB | Msa0714230

M. sativa cultivar zhongmu-4 / Msa0714230

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009628 GO:0036377 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0080167
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714230	XP_003611634.1	97.377	305	8	0	1	305	1	305	0.0	626

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714230	sp\|Q9SZU7\|KAI2_ARATH	76.866	268	62	0	1	268	1	268	2.43e-158	445

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714230	G7K3X2	97.377	305	8	0	1	305	1	305	0.0	626

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0714230	0.838340	3.047366e-57	-8.615850e-47
Msa0000800	Msa0714230	-0.817532	3.140829e-52	-8.615850e-47
Msa0001510	Msa0714230	0.829492	4.994305e-55	-8.615850e-47
Msa0002110	Msa0714230	0.866478	2.768768e-65	-8.615850e-47
Msa0002690	Msa0714230	0.885845	5.721015e-72	-8.615850e-47
Msa0002700	Msa0714230	0.878754	2.174156e-69	-8.615850e-47
Msa0003340	Msa0714230	0.861329	1.107255e-63	-8.615850e-47
Msa0003840	Msa0714230	-0.813465	2.524288e-51	-8.615850e-47
Msa0004180	Msa0714230	0.899862	1.301313e-77	-8.615850e-47
Msa0004940	Msa0714230	-0.814615	1.408078e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714230	MtrunA17_Chr5g0401521	97.377	305	8	0	1	305	1	305	0.0	626
Msa0714230	MtrunA17_Chr4g0053741	78.802	217	46	0	52	268	1	217	5.78e-132	374
Msa0714230	MtrunA17_Chr1g0152551	57.028	249	105	2	6	253	8	255	2.97e-107	313
Msa0714230	MtrunA17_Chr3g0093821	38.776	245	148	2	9	252	13	256	5.78e-67	210
Msa0714230	MtrunA17_Chr6g0485021	40.157	254	149	3	9	260	22	274	3.33e-65	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714230	AT4G37470.1	76.866	268	62	0	1	268	1	268	2.48e-159	445
Msa0714230	AT3G03990.1	58.065	248	103	1	6	253	8	254	2.20e-107	313
Msa0714230	AT3G24420.1	42.742	248	139	3	7	252	13	259	1.12e-75	233

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Find 117 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATACATGAGAAAATAG+AGG	0.447190	5_1:-6876647	None:intergenic
AACACCGGAATAACAATATC+TGG	0.403561	5_1:-6874932	None:intergenic
AACGATGTGAATTACTTTGG+AGG	0.518896	5_1:+6874551	Msa0714230:CDS
AACTTAATATTGAGCCCACG+AGG	0.689184	5_1:+6874969	Msa0714230:CDS
AAGATACATGAGAAAATAGA+GGG	0.585612	5_1:-6876646	None:intergenic
AAGTCACAACCTCACACAAA+AGG	0.500977	5_1:+6873501	Msa0714230:five_prime_UTR
AAGTTAAGGGTCCTGGAAGA+AGG	0.512121	5_1:+6876489	Msa0714230:three_prime_UTR
AATACAAACTGAATTTGTTA+CGG	0.476164	5_1:-6876994	None:intergenic
AATTACAAAGCATGGTGTTA+TGG	0.329086	5_1:+6874620	Msa0714230:CDS
ACAAGCTGAGAAAGATATGG+CGG	0.694733	5_1:+6874811	Msa0714230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAAAAAATGGGAATAG+TGG	+	chr5_1:6873551-6873570	Msa0714230:exon	30.0%
CGAAAATCATCAACAAGATA+AGG	-	chr5_1:6873675-6873694	None:intergenic	30.0%
ACAAGTTTAAGGAAAAGATC+AGG	-	chr5_1:6873888-6873907	None:intergenic	30.0%
TCAATCAATTCAACTTTAGC+TGG	+	chr5_1:6874262-6874281	Msa0714230:intron	30.0%
CAATCAATTCAACTTTAGCT+GGG	+	chr5_1:6874263-6874282	Msa0714230:intron	30.0%
TATTGTTAAGCAACTTAGGT+AGG	-	chr5_1:6874420-6874439	None:intergenic	30.0%
TTGAACGATGTGAATTACTT+TGG	+	chr5_1:6874548-6874567	Msa0714230:CDS	30.0%
TCAGCTTGTATAATATGACA+AGG	-	chr5_1:6874800-6874819	None:intergenic	30.0%
TATACAAGCTGAGAAAGATA+TGG	+	chr5_1:6874808-6874827	Msa0714230:CDS	30.0%
ATAACAAGTATTTACCTCGT+GGG	-	chr5_1:6874986-6875005	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6873317	6877411	6873317	ID=Msa0714230;Name=Msa0714230
chr5_1	mRNA	6873317	6877411	6873317	ID=Msa0714230-mRNA-1;Parent=Msa0714230;Name=Msa0714230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=244\|1\|1\|1\|1\|1\|3\|978\|305
chr5_1	exon	6873317	6873928	6873317	ID=Msa0714230-mRNA-1:exon:2822;Parent=Msa0714230-mRNA-1
chr5_1	exon	6874544	6874990	6874544	ID=Msa0714230-mRNA-1:exon:2823;Parent=Msa0714230-mRNA-1
chr5_1	exon	6876331	6877411	6876331	ID=Msa0714230-mRNA-1:exon:2824;Parent=Msa0714230-mRNA-1
chr5_1	five_prime_UTR	6873317	6873560	6873317	ID=Msa0714230-mRNA-1:five_prime_utr;Parent=Msa0714230-mRNA-1
chr5_1	CDS	6873561	6873928	6873561	ID=Msa0714230-mRNA-1:cds;Parent=Msa0714230-mRNA-1
chr5_1	CDS	6874544	6874990	6874544	ID=Msa0714230-mRNA-1:cds;Parent=Msa0714230-mRNA-1
chr5_1	CDS	6876331	6876433	6876331	ID=Msa0714230-mRNA-1:cds;Parent=Msa0714230-mRNA-1
chr5_1	three_prime_UTR	6876434	6877411	6876434	ID=Msa0714230-mRNA-1:three_prime_utr;Parent=Msa0714230-mRNA-1

Gene Sequence

>Msa0714230

ATGGGAATAGTGGAAGAAGCTCACAACGTGAAAGTTTTAGGAACAGGAAATAGGTACATAGTTCTAGCTCATGGATTTGGAACAGACCAATCTGTGTGGAAACATTTTGTACCTTATCTTGTTGATGATTTTCGTGTTGTTCTATATGATAACATGGGTGCTGGTACCACTAACCCTGAATACTTTGATTCTGAGAGACATTCAAGCTTAGAAGGTTATGCTTATGATTTACTTGCTATTTTGGAAGAGCTTCAAATTGACTCTTGCGTATTTGTTGGTCATTCTGTTTCTGCAATGATTGGTGCTGTTGCTTCTATTACACGACCTGATCTTTTCCTTAAACTTGTCATGGTTTCCGGTTCACCAAGGTATTTGAACGATGTGAATTACTTTGGAGGATTTGAGCAAGAAGATTTGAACCAATTATTCAACGCTATCGCTGAAAATTACAAAGCATGGTGTTATGGATTCGCTCCACTGGCTGTGGGTGGGGACATGGATTCAGTGGCAGTACAGGAGTTTAGTCGAACATTGTTCAACATGAGGCCAGACATAGCTCTAATAGTGTCACGGACAATTTTTCAAAGTGACATGAGACAAATTTTGAACCTTGTTACTGTGCCTTGTCATATTATACAAGCTGAGAAAGATATGGCGGTTCCGGTGATGGTTTCGGAGTATCTTCACCAACACTTAGGTGGTCAGTCCATTGTTGAGGTCATGCAGACTGATGGTCATTTGCCGCAGTTAAGCTCACCAGATATTGTTATTCCGGTGTTGCTTAAACACATTCAACTTAATATTGAGCCCACGAGCTGCCAGAGAAACTACCACACTTTCCAAAATCCAGAGGCTTCATCAACAAAAACAACAAATACAGAGGCTTCATCCTTGATGAAAATGGAAGCAGATTTGTAA

Protein sequence

>Msa0714230

MGIVEEAHNVKVLGTGNRYIVLAHGFGTDQSVWKHFVPYLVDDFRVVLYDNMGAGTTNPEYFDSERHSSLEGYAYDLLAILEELQIDSCVFVGHSVSAMIGAVASITRPDLFLKLVMVSGSPRYLNDVNYFGGFEQEDLNQLFNAIAENYKAWCYGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALIVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQHLGGQSIVEVMQTDGHLPQLSSPDIVIPVLLKHIQLNIEPTSCQRNYHTFQNPEASSTKTTNTEASSLMKMEADL*