AlfalfaGEDB | Msa0127590

M. sativa cultivar zhongmu-4 / Msa0127590

KEGG: K10406
GO: GO:0003008 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005813 GO:0005815 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0005912 GO:0005913 GO:0005915 GO:0006928 GO:0007017 GO:0007018 GO:0007155 GO:0007600 GO:0007601 GO:0008150 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022610 GO:0030054 GO:0032501 GO:0032991 GO:0034330 GO:0034331 GO:0034332 GO:0034334 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0043954 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045216 GO:0045217 GO:0045218 GO:0050877 GO:0050953 GO:0070161 GO:0071840 GO:0090136 GO:0098609
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127590	sp\|Q8W0Y9\|KN14U_ARATH	56.126	604	233	5	32	605	23	624	0.0	625

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127590	A0A072VN40	93.661	631	15	1	1	606	1	631	0.0	1197

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0079740	Msa0127590	0.963112	1.093783e-121	-8.615850e-47
Msa0127590	Msa0172190	0.945809	1.520057e-104	-8.615850e-47
Msa0127590	Msa0411160	0.811531	6.682401e-51	-8.615850e-47
Msa0127590	Msa0411190	0.810461	1.139804e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127590	MtrunA17_Chr1g0191181	93.661	631	15	1	1	606	1	631	0.0	1197
Msa0127590	MtrunA17_Chr7g0272871	40.662	423	197	13	53	435	89	497	2.20e-77	260
Msa0127590	MtrunA17_Chr1g0191851	40.541	407	193	10	66	435	123	517	7.61e-76	257
Msa0127590	MtrunA17_Chr5g0411971	35.763	439	217	12	39	433	352	769	2.60e-66	234
Msa0127590	MtrunA17_Chr5g0421521	35.535	439	218	12	39	433	327	744	5.64e-66	233
Msa0127590	MtrunA17_Chr5g0421591	35.535	439	218	12	39	433	327	744	1.93e-65	230
Msa0127590	MtrunA17_Chr2g0312631	35.308	439	213	11	62	440	358	785	4.17e-63	225
Msa0127590	MtrunA17_Chr4g0042061	35.443	395	212	8	37	389	380	773	4.23e-62	219
Msa0127590	MtrunA17_Chr2g0319271	33.596	381	210	7	51	389	362	741	2.50e-58	208
Msa0127590	MtrunA17_Chr8g0369881	37.536	349	169	9	75	388	862	1196	1.66e-57	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127590	AT5G27950.1	56.126	604	233	5	32	605	23	624	0.0	625
Msa0127590	AT5G27950.2	54.013	461	178	6	176	605	1	458	9.19e-148	435
Msa0127590	AT1G55550.1	38.735	506	261	12	47	522	46	532	8.53e-106	339
Msa0127590	AT5G27550.2	38.131	396	198	7	74	434	118	501	3.52e-71	244
Msa0127590	AT5G27550.1	38.131	396	198	7	74	434	118	501	3.52e-71	244
Msa0127590	AT2G22610.2	34.818	494	233	15	7	451	349	802	1.76e-65	232
Msa0127590	AT2G22610.3	34.818	494	233	15	7	451	350	803	1.87e-65	232
Msa0127590	AT2G22610.1	34.818	494	233	15	7	451	349	802	1.88e-65	232
Msa0127590	AT1G72250.2	36.501	463	209	14	49	440	454	902	1.60e-64	230
Msa0127590	AT1G72250.1	36.501	463	209	14	49	440	445	893	1.62e-64	230

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Find 149 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGATGAACCATCCA+TGG	0.524875	1_3:+57007846	None:intergenic
AAAAGGATTGGTGGAAATTG+AGG	0.447521	1_3:-57007375	Msa0127590:CDS
AAAAGTGGGAAGGTGTGCTA+GGG	0.566397	1_3:+57009372	None:intergenic
AAAGCGAAACAAGTAAGTTG+TGG	0.596701	1_3:-57007096	Msa0127590:CDS
AAAGGATTGGTGGAAATTGA+GGG	0.519322	1_3:-57007374	Msa0127590:CDS
AAAGGTTACCCATTTGCCAG+AGG	0.646031	1_3:+57007739	None:intergenic
AACAGATCCAAAAGGATTGG+TGG	0.517605	1_3:-57007384	Msa0127590:CDS
AACATCCAAACAGATCCAAA+AGG	0.557163	1_3:-57007392	Msa0127590:CDS
AAGAGCTCTTCAAGGGCACG+AGG	0.669234	1_3:+57007880	None:intergenic
AAGGCCTAAATGCAATGAAT+TGG	0.377660	1_3:-57005692	Msa0127590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCAAAGGTAGTTGTTGT+AGG	-	chr1_3:57006243-57006262	Msa0127590:intron	30.0%
TATCAAAGGTAGTTGTTGTA+GGG	-	chr1_3:57006244-57006263	Msa0127590:intron	30.0%
AGTATGTTGGAAGTTTACAT+GGG	-	chr1_3:57006943-57006962	Msa0127590:intron	30.0%
GGTTTAGTGAAAATAGCAAA+AGG	+	chr1_3:57007036-57007055	None:intergenic	30.0%
AATTATCAATTTGGATGCAG+TGG	+	chr1_3:57008085-57008104	None:intergenic	30.0%
TTACTGCTTACATTTAATGC+AGG	-	chr1_3:57008534-57008553	Msa0127590:CDS	30.0%
ACTTTCCTGAAGATTATATG+TGG	+	chr1_3:57008698-57008717	None:intergenic	30.0%
GAACATTATTTGTTTCAGCA+TGG	+	chr1_3:57009023-57009042	None:intergenic	30.0%
CTTTCTGTATGAATGGTATT+TGG	+	chr1_3:57009045-57009064	None:intergenic	30.0%
CAAATACCATTCATACAGAA+AGG	-	chr1_3:57009043-57009062	Msa0127590:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	57005259	57009517	57005259	ID=Msa0127590;Name=Msa0127590
chr1_3	mRNA	57005259	57009517	57005259	ID=Msa0127590-mRNA-1;Parent=Msa0127590;Name=Msa0127590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=627\|0.87\|0.88\|1\|1\|1\|9\|329\|606
chr1_3	exon	57005259	57006220	57005259	ID=Msa0127590-mRNA-1:exon:18135;Parent=Msa0127590-mRNA-1
chr1_3	exon	57006303	57006393	57006303	ID=Msa0127590-mRNA-1:exon:18134;Parent=Msa0127590-mRNA-1
chr1_3	exon	57006947	57007165	57006947	ID=Msa0127590-mRNA-1:exon:18133;Parent=Msa0127590-mRNA-1
chr1_3	exon	57007257	57007421	57007257	ID=Msa0127590-mRNA-1:exon:18132;Parent=Msa0127590-mRNA-1
chr1_3	exon	57007748	57007932	57007748	ID=Msa0127590-mRNA-1:exon:18131;Parent=Msa0127590-mRNA-1
chr1_3	exon	57008053	57008159	57008053	ID=Msa0127590-mRNA-1:exon:18130;Parent=Msa0127590-mRNA-1
chr1_3	exon	57008273	57008434	57008273	ID=Msa0127590-mRNA-1:exon:18129;Parent=Msa0127590-mRNA-1
chr1_3	exon	57008525	57008608	57008525	ID=Msa0127590-mRNA-1:exon:18128;Parent=Msa0127590-mRNA-1
chr1_3	exon	57008716	57009517	57008716	ID=Msa0127590-mRNA-1:exon:18127;Parent=Msa0127590-mRNA-1
chr1_3	five_prime_UTR	57008891	57009517	57008891	ID=Msa0127590-mRNA-1:five_prime_utr;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57008716	57008890	57008716	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57008525	57008608	57008525	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57008273	57008434	57008273	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57008053	57008159	57008053	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57007748	57007932	57007748	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57007257	57007421	57007257	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57006947	57007165	57006947	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57006303	57006393	57006303	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	CDS	57005588	57006220	57005588	ID=Msa0127590-mRNA-1:cds;Parent=Msa0127590-mRNA-1
chr1_3	three_prime_UTR	57005259	57005587	57005259	ID=Msa0127590-mRNA-1:three_prime_utr;Parent=Msa0127590-mRNA-1

Gene Sequence

>Msa0127590

ATGATGGTTTGTAATGAAGAAGAAAAGATTGAGGTGTTTTCAGAAAATGAAACTGAGGTTTCTAAGTCAGATTCAGTTGATGGGTCGTTACCGGTTTCGACGGTTTTCACTGATGTTGGAGTTGTGCCTGAGCAACAAAAGAATGAGCTTGAACACTTCATATCCAATTTGCAAAAAGAAGTTGAGGAACTGAGGCTGAAGCAGAGAAAAGTGGATGAAAAGAGGAGAGAAGCATTGAGTAAGATATTGGATATCAAAGGGAGCATTCGAGTGTTTTGTAGAATTCGACCGGATCATTTGACCGAAAAGAGAAGAAATTCTGAACCTGTATCAGCTGGATCCGAGAGAATTCGGGTTAAGTTCGGAGGAACAAGGAAAGATTTTGAGTTTGATAAGGTTTTTCCTCAAGAAGCAAGCCAAGAAAGTGTTTTTGTTGATGTCGAGCCGATTCTAAGATCTGCAATGGACGGACACAATGTGTGCGTTTTCGCTTACGGTCAAACAGGCACAGGAAAGACATTCACCATGGATGGTACAAATGAGCAGCCAGGGATTATTCCTCGTGCCCTTGAAGAGCTCTTTCGTCAAGCATCCATGGATGGTTCATCTTCTTTTACTTTTTCAATGAGTATGTTGGAAGTTTACATGGGCAATGTCAGGGATCTGCTGGCTCCCAGACAATCTTGTAGACCACACCAACCTCTGGCAAATGGAAATCTCAACATCCAAACAGATCCAAAAGGATTGGTGGAAATTGAGGGTCTCTCAGAAGTGCAAATTTCTGATTGTGCTAAAGCCAAATGGTGGTACAACAAGGGTAGAAGATTCAGGTCAACCTCGTGGACTAACGTAAATGAGGCATCAAGCAGATCACATTGCTTGACAAGGATTAGCATATTTAGACGTGGGGATACCTCGGAAGCCAAAAGCGAAACAAGTAAGTTGTGGATGGTTGATCTTGGAGGCAGTGAACGGTTGCTAAAAACTGGAGCCAGAGGACTAACACTTGATGAAGGTCGAGCTATTAATCTCTCTCTTTCAGCTCTAGCTGATGTCCTTGCAGCTCTGAAGAGAAAGAGGTGTCATGTACCTTACAGCCCGTCTGAAGAAGATGTTTGCGAGACGATTTGTTCTTTAAACTTTGCAAAGAGAGCAAGAGCAATAGAGTCCAATAAAGAAGTACCCATGGAATTGAAGAAACAAAAGGAGATGAAAATTATGGAGCTCGAGGAAGACATTAAGGAAGCTGAAAAACAACGTCAGAGTTTAGGAGATCAAATACAGAATGTTGAGTTAAAGTTATGCGAGAATAAAAAGCTCTTTTCAGCCACATATAATCTTCAGGAAAGTGATGACTTGGTAACCTCTACTAGCCTCAAAGATGATTTCAAAGAGGTCACCGAAACTCCTAAAGCATCTAAGAAGTCTACTCCAAGAAGTGTCTCCAATTCAGTGCCTCGATTCATGAGTTCAACTGTTGCTAGTCGGCACAGGCAAATTGCTTCTGAGCAAGAAATTGGGGGAAGAACAAAAAGTTTAAGATCAGTAGTCACCAGAAATTCAATCCAGTTTCCATGTTCTCAATCATTAAGTTATTCAGATCTTCGCATCAAAGCAATATTGCGAAGTTCAACTGGAATTGGAAAATCTCGCCATGCTGAAACAAATAATGTTCCAAATACCATTCATACAGAAAGGCCTAAATGCAATGAATTGGAATCAAAAGTCGTAGCTCCTCGAAGTACAACGGTTACCTCATCAGATTCAAATCTGAGAGTAACGTTATGTCGTCATAGAAGAAGGATGTCTAACCTGATCTAA

Protein sequence

>Msa0127590

MMVCNEEEKIEVFSENETEVSKSDSVDGSLPVSTVFTDVGVVPEQQKNELEHFISNLQKEVEELRLKQRKVDEKRREALSKILDIKGSIRVFCRIRPDHLTEKRRNSEPVSAGSERIRVKFGGTRKDFEFDKVFPQEASQESVFVDVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFRQASMDGSSSFTFSMSMLEVYMGNVRDLLAPRQSCRPHQPLANGNLNIQTDPKGLVEIEGLSEVQISDCAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDTSEAKSETSKLWMVDLGGSERLLKTGARGLTLDEGRAINLSLSALADVLAALKRKRCHVPYSPSEEDVCETICSLNFAKRARAIESNKEVPMELKKQKEMKIMELEEDIKEAEKQRQSLGDQIQNVELKLCENKKLFSATYNLQESDDLVTSTSLKDDFKEVTETPKASKKSTPRSVSNSVPRFMSSTVASRHRQIASEQEIGGRTKSLRSVVTRNSIQFPCSQSLSYSDLRIKAILRSSTGIGKSRHAETNNVPNTIHTERPKCNELESKVVAPRSTTVTSSDSNLRVTLCRHRRRMSNLI*