AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127960 MtrunA17_Chr1g0194371 95.575 565 5 3 23 586 1 546 0.0 1107
Msa0127960 MtrunA17_Chr1g0194371 88.889 63 7 0 580 642 601 663 1.56e-27 118
Msa0127960 MtrunA17_Chr7g0270221 62.625 701 122 7 23 641 1 643 0.0 857
Msa0127960 MtrunA17_Chr5g0396691 46.086 677 283 6 26 641 6 661 0.0 599
Msa0127960 MtrunA17_Chr5g0396711 45.280 678 289 7 24 640 4 660 0.0 576
Msa0127960 MtrunA17_Chr8g0388081 46.535 606 252 5 90 634 1 595 0.0 550
Msa0127960 MtrunA17_Chr1g0162621 42.285 674 307 6 26 637 5 658 0.0 540
Msa0127960 MtrunA17_Chr4g0034181 44.760 563 286 5 26 586 5 544 8.60e-172 504
Msa0127960 MtrunA17_Chr4g0034181 47.826 69 36 0 569 637 588 656 2.00e-11 67.0
Msa0127960 MtrunA17_Chr1g0205711 36.364 583 323 13 20 577 8 567 1.09e-110 348
Msa0127960 MtrunA17_Chr1g0160041 32.316 557 320 15 65 586 52 586 7.44e-81 270
Msa0127960 MtrunA17_Chr3g0124631 31.551 561 326 14 63 586 49 588 2.32e-75 255
Msa0127960 MtrunA17_Chr3g0120731 31.203 532 306 14 81 574 97 606 2.42e-70 242
Msa0127960 MtrunA17_Chr3g0121931 26.642 548 319 16 96 586 96 617 4.27e-36 144
Msa0127960 MtrunA17_Chr3g0121951 24.961 649 349 18 96 633 94 715 1.18e-34 140
Msa0127960 MtrunA17_Chr8g0377991 25.045 551 325 16 96 586 98 620 1.10e-32 134
Msa0127960 MtrunA17_Chr1g0180541 25.915 355 191 11 251 599 191 479 4.79e-23 103
Msa0127960 MtrunA17_Chr5g0396331 22.403 491 296 13 108 583 41 461 9.10e-22 99.8
Msa0127960 MtrunA17_Chr1g0180551 26.923 364 176 13 251 599 264 552 2.70e-19 92.0
Msa0127960 MtrunA17_Chr4g0072561 25.536 513 269 21 96 585 50 472 1.40e-18 89.7
Msa0127960 MtrunA17_Chr1g0157401 24.927 341 191 11 250 585 204 484 5.77e-18 87.8
Msa0127960 MtrunA17_Chr4g0068151 24.090 577 312 21 108 637 47 544 1.53e-17 86.3
Msa0127960 MtrunA17_Chr8g0370701 23.482 494 289 17 109 583 84 507 3.04e-17 85.5
Msa0127960 MtrunA17_Chr5g0406681 23.108 502 288 15 104 583 65 490 4.04e-17 85.1
Msa0127960 MtrunA17_Chr8g0370731 23.840 474 264 17 133 583 19 418 1.08e-16 83.6
Msa0127960 MtrunA17_Chr1g0197391 27.059 340 182 12 251 585 212 490 2.65e-16 82.4
Msa0127960 MtrunA17_Chr2g0334131 35.329 167 97 8 426 585 45 207 9.14e-16 78.2
Msa0127960 MtrunA17_Chr4g0028411 33.742 163 102 5 426 585 307 466 2.89e-15 79.0
Msa0127960 MtrunA17_Chr5g0395431 34.706 170 94 8 426 585 349 511 4.95e-15 78.6
Msa0127960 MtrunA17_Chr4g0000461 36.310 168 96 7 426 586 303 466 5.64e-14 75.1
Msa0127960 MtrunA17_Chr2g0327341 33.742 163 102 5 426 585 304 463 8.49e-14 74.3
Msa0127960 MtrunA17_Chr4g0039791 32.515 163 104 5 426 585 326 485 4.51e-12 68.9
Msa0127960 MtrunA17_Chr3g0109731 28.761 226 139 7 429 642 306 521 1.04e-11 67.8
Msa0127960 MtrunA17_Chr5g0396311 31.579 171 102 6 425 583 296 463 2.20e-11 67.0
Msa0127960 MtrunA17_Chr1g0186071 30.864 162 107 5 426 585 322 480 2.66e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127960 AT2G47240.1 64.716 564 180 2 23 586 1 545 0.0 785
Msa0127960 AT2G47240.1 59.259 54 22 0 586 639 606 659 3.07e-13 73.6
Msa0127960 AT2G47240.2 64.716 564 180 2 23 586 1 545 0.0 785
Msa0127960 AT2G47240.2 59.259 54 22 0 586 639 606 659 3.07e-13 73.6
Msa0127960 AT2G47240.3 64.716 564 180 2 23 586 1 545 0.0 785
Msa0127960 AT2G47240.3 59.259 54 22 0 586 639 606 659 3.07e-13 73.6
Msa0127960 AT2G47240.4 65.795 497 159 1 90 586 1 486 0.0 716
Msa0127960 AT2G47240.4 59.259 54 22 0 586 639 547 600 2.58e-13 73.6
Msa0127960 AT4G23850.1 47.029 589 289 3 22 606 3 572 0.0 568
Msa0127960 AT4G23850.1 59.615 52 21 0 586 637 609 660 1.50e-12 71.2
Msa0127960 AT4G11030.1 46.571 627 305 7 24 641 5 610 0.0 566
Msa0127960 AT1G64400.1 48.221 562 271 3 26 586 6 548 0.0 559
Msa0127960 AT1G64400.1 66.667 48 16 0 586 633 609 656 7.47e-12 68.9
Msa0127960 AT1G49430.1 45.341 558 285 3 30 586 11 549 1.70e-172 507
Msa0127960 AT1G49430.2 44.227 511 265 3 30 539 11 502 4.52e-152 449
Msa0127960 AT5G27600.1 39.106 537 295 10 46 578 63 571 2.12e-112 353
Msa0127960 AT3G05970.1 40.762 525 276 10 58 578 78 571 1.33e-110 348
Msa0127960 AT1G77590.1 31.598 557 322 15 64 586 51 582 6.49e-79 265
Msa0127960 AT2G04350.2 29.570 558 332 14 67 586 77 611 2.99e-69 239
Msa0127960 AT2G04350.1 29.570 558 332 14 67 586 77 611 2.99e-69 239
Msa0127960 AT1G77590.2 32.751 458 264 12 149 586 3 436 1.90e-67 230
Msa0127960 AT4G14070.1 24.682 628 365 18 96 632 116 726 2.17e-38 152
Msa0127960 AT3G23790.1 26.894 528 304 15 96 568 100 600 1.26e-36 146
Msa0127960 AT2G47245.1 55.446 101 37 1 25 125 36 128 2.09e-29 113
Msa0127960 AT1G21530.2 24.949 493 288 16 108 585 42 467 4.04e-23 104
Msa0127960 AT1G66120.1 24.678 543 296 18 108 621 41 499 4.66e-23 103
Msa0127960 AT1G21530.1 24.746 493 287 16 108 585 42 465 6.71e-22 100
Msa0127960 AT2G17650.1 24.851 503 270 14 108 576 88 516 7.48e-22 100
Msa0127960 AT1G65890.1 24.056 503 266 19 108 576 41 461 2.77e-20 95.5
Msa0127960 AT1G65880.1 23.913 506 277 17 108 583 41 468 3.96e-20 95.1
Msa0127960 AT1G20560.1 22.828 495 295 12 108 583 43 469 4.71e-20 94.7
Msa0127960 AT5G16340.1 24.472 568 322 21 108 642 42 535 1.21e-19 93.2
Msa0127960 AT1G77240.1 23.307 502 287 18 108 585 41 468 7.47e-19 90.9
Msa0127960 AT1G20560.2 25.135 370 194 10 230 583 89 391 2.64e-16 82.4
Msa0127960 AT3G21230.3 34.356 163 103 4 426 585 331 492 5.86e-15 78.6
Msa0127960 AT3G21230.1 34.356 163 103 4 426 585 331 492 7.40e-15 78.2
Msa0127960 AT3G21230.2 34.356 163 103 4 426 585 331 492 9.96e-15 77.8
Msa0127960 AT1G65060.1 37.671 146 75 7 426 561 326 465 8.15e-14 75.1
Msa0127960 AT1G65060.2 37.671 146 75 7 426 561 326 465 1.23e-13 74.3
Msa0127960 AT5G16370.1 29.752 242 134 11 429 642 302 535 2.32e-13 73.6
Msa0127960 AT4G19010.1 31.492 181 114 6 412 585 309 486 4.83e-13 72.4
Msa0127960 AT3G16910.1 34.965 143 81 3 452 583 339 480 8.32e-13 72.0
Msa0127960 AT4G05160.1 33.742 163 102 5 426 585 309 468 1.33e-12 71.2
Msa0127960 AT5G63380.1 33.962 159 95 7 432 585 329 482 1.42e-12 71.2
Msa0127960 AT1G75960.1 33.939 165 94 7 434 585 305 467 7.07e-12 68.9
Msa0127960 AT1G51680.1 36.310 168 96 8 426 586 323 486 8.59e-12 68.6
Msa0127960 AT1G51680.3 35.882 170 98 8 424 586 321 486 1.16e-11 68.2
Msa0127960 AT1G51680.2 36.310 168 96 8 426 586 323 486 1.52e-11 67.8
Msa0127960 AT5G38120.1 26.032 315 166 13 251 561 200 451 4.44e-11 66.2
Msa0127960 AT5G38120.3 26.032 315 166 13 251 561 200 451 5.05e-11 65.9
Msa0127960 AT1G68270.1 32.759 174 88 8 429 583 275 438 5.57e-11 65.9
Msa0127960 AT5G38120.4 26.032 315 166 13 251 561 200 451 5.60e-11 65.9
Msa0127960 AT5G38120.2 26.032 315 166 13 251 561 200 451 5.60e-11 65.9

Find 138 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGAATTGATTCCATGTATA+TGG 0.245820 1_3:-57571788 None:intergenic
AATTTATTTCACTGTTTATA+AGG 0.250750 1_3:+57570389 Msa0127960:CDS
AGGTAGAAACCTCAAAATTT+AGG 0.261202 1_3:-57578274 None:intergenic
GAGAAAATGAATTGCTCTTT+AGG 0.284055 1_3:+57578547 Msa0127960:three_prime_UTR
CATACTATTGGTGTTATGTT+TGG 0.284855 1_3:+57578470 Msa0127960:three_prime_UTR
ATACTTACATCTTCAACTAT+TGG 0.314643 1_3:-57577067 None:intergenic
ATTACCTTTCAATCTCTTAG+AGG 0.321844 1_3:-57571599 None:intergenic
AGACCCGCTTCCATTTGATA+TGG 0.328595 1_3:+57577947 Msa0127960:CDS
GTGGAACCATCCATCTATTA+TGG 0.334919 1_3:-57576816 None:intergenic
TTCTTCAATCTCAGAGCTTA+AGG 0.341131 1_3:-57576255 None:intergenic
TGTGTTAAAACAACACCTTT+AGG 0.342951 1_3:-57572528 None:intergenic
CCACCTCTTAACATTGTATT+CGG 0.356464 1_3:-57569668 None:intergenic
CAACATGATCAAGTATTATA+AGG 0.357038 1_3:+57578010 Msa0127960:CDS
GTCAAGTATTTGTCCTCCTT+TGG 0.368480 1_3:+57572458 Msa0127960:CDS
TAAGTACAACAAGCAACTTT+AGG 0.370162 1_3:-57578354 None:intergenic
TCCTGATTTCACCTCTGCTT+GGG 0.376030 1_3:+57570354 Msa0127960:CDS
TTGTATGTCTTCCAAACATA+TGG 0.379295 1_3:-57570666 None:intergenic
CATAGATAGGACCATATGTT+TGG 0.379474 1_3:+57570655 Msa0127960:intron
ATGTTTGGATCCTACTAGTA+TGG 0.392819 1_3:+57578485 Msa0127960:three_prime_UTR
CCTAGCATGCACATTTCATC+TGG 0.398573 1_3:-57576635 None:intergenic
GAAGGATCTGAATGCGTTGC+TGG 0.399764 1_3:+57575380 Msa0127960:intron
GAGAGAAGGTTACGGTAAAC+AGG 0.400121 1_3:-57570307 None:intergenic
ACAAAAGAAGCCATAATAGA+TGG 0.412059 1_3:+57576806 Msa0127960:CDS
ATCCTGATTTCACCTCTGCT+TGG 0.423007 1_3:+57570353 Msa0127960:CDS
GAATCCTACAGTGTAATTCT+TGG 0.432785 1_3:-57569644 None:intergenic
ATAATCCTCATAATACCATT+AGG 0.434153 1_3:-57576962 None:intergenic
TGCTTCCTAATGGTATTATG+AGG 0.438775 1_3:+57576957 Msa0127960:CDS
TGGTTTAATTCCAGCGTTTG+TGG 0.443623 1_3:-57571768 None:intergenic
TCCCAAGCAGAGGTGAAATC+AGG 0.444690 1_3:-57570355 None:intergenic
TAGACATATCCGAGTCTAGA+AGG 0.448129 1_3:-57578294 None:intergenic
CGTGTTAGACTAATAATATC+TGG 0.450794 1_3:+57576224 Msa0127960:CDS
ATGGAATCAATTCGTACAAA+AGG 0.460579 1_3:+57571796 Msa0127960:CDS
CGATCAAGGATGTGAGCTAA+AGG 0.462061 1_3:-57572752 None:intergenic
TTTCCGTAACGGTGCATCCG+TGG 0.462706 1_3:+57572793 Msa0127960:CDS
TCAAGATAAGAAGGTTAAAG+AGG 0.465855 1_3:+57571412 Msa0127960:CDS
CATCCGTGGGTTACTATCAC+GGG 0.468782 1_3:+57572807 Msa0127960:CDS
TTAAAGCCAACATTGTTTGC+TGG 0.471080 1_3:+57575417 Msa0127960:CDS
TCTGGAAATGTAAGAGTAGT+TGG 0.472023 1_3:-57576617 None:intergenic
AAGTCTCTTTCCATATCAAA+TGG 0.472138 1_3:-57577957 None:intergenic
AGAGGATTGTAACCCATGTC+TGG 0.475731 1_3:-57576707 None:intergenic
TTCCGTAACGGTGCATCCGT+GGG 0.476822 1_3:+57572794 Msa0127960:CDS
CATGGAACAATTTGAGGACA+AGG 0.478090 1_3:+57572590 Msa0127960:CDS
AAAGATGAGGCCACAAACGC+TGG 0.481975 1_3:+57571758 Msa0127960:CDS
ATTGGAGAAATGCTTCCTAA+TGG 0.484911 1_3:+57576947 Msa0127960:CDS
CCAGATGAAATGTGCATGCT+AGG 0.486775 1_3:+57576635 Msa0127960:CDS
ACATCCTCAAAACCGCATGC+TGG 0.486879 1_3:+57570489 Msa0127960:CDS
CATCCTCAAAACCGCATGCT+GGG 0.489805 1_3:+57570490 Msa0127960:CDS
GGATGGCGTAAAATTGTTGA+TGG 0.493101 1_3:+57570511 Msa0127960:CDS
AACCCACGGATGCACCGTTA+CGG 0.493528 1_3:-57572796 None:intergenic
CTCAAAACCGCATGCTGGGA+TGG 0.496069 1_3:+57570494 Msa0127960:CDS
AATCTTGTTAAGCTTTCTCA+AGG 0.500570 1_3:+57576998 Msa0127960:CDS
TAATGAAGTGAAGCCCACTA+TGG 0.502558 1_3:-57571723 None:intergenic
ATTCTTCAATACAACGATCA+AGG 0.508652 1_3:-57572766 None:intergenic
AATTAAGGTTGAGGAAGGAA+AGG 0.508909 1_3:+57570255 Msa0127960:CDS
AAGGTTGAGGAAGGAAAGGA+AGG 0.508962 1_3:+57570259 Msa0127960:CDS
AACGTACTAGCTTTAGTAAG+AGG 0.510169 1_3:+57572555 Msa0127960:CDS
GCGTAAAATTGTTGATGGAA+AGG 0.513370 1_3:+57570516 Msa0127960:CDS
GAACTATACAAAAGTTTGAC+TGG 0.515018 1_3:+57578244 Msa0127960:CDS
CAAGGTCCTTACCATAGCCT+TGG 0.521183 1_3:-57576310 None:intergenic
GACATGGGTTACAATCCTCT+TGG 0.525689 1_3:+57576710 Msa0127960:CDS
GTATTATGAGGATTATTGAC+AGG 0.526644 1_3:+57576969 Msa0127960:CDS
CCTCTATGAAATTAGTTGAA+GGG 0.527464 1_3:+57577897 Msa0127960:intron
CTGGAATTAAACCATATACA+TGG 0.532708 1_3:+57571777 Msa0127960:CDS
CATTGTTTGCTGGTGTACCA+CGG 0.533381 1_3:+57575427 Msa0127960:CDS
GTATATATCCTAGGGGACAT+TGG 0.534838 1_3:+57576929 Msa0127960:intron
AAGGAGGACAAATACTTGAC+GGG 0.536225 1_3:-57572455 None:intergenic
TGTATTCAATGAATTGCGGC+TGG 0.537145 1_3:+57576676 Msa0127960:CDS
GATCAAGGATGTGAGCTAAA+GGG 0.537448 1_3:-57572751 None:intergenic
GAGGTGAAATCAGGATCCAT+TGG 0.538563 1_3:-57570346 None:intergenic
TCTCCGAATACAATGTTAAG+AGG 0.538812 1_3:+57569665 Msa0127960:CDS
CAGCACGGCACCATACTAGT+AGG 0.539736 1_3:-57578495 None:intergenic
ATTTGATATGGAAAGAGACT+TGG 0.545381 1_3:+57577959 Msa0127960:CDS
GCCTTTGTATGCCAAGGCTA+TGG 0.547652 1_3:+57576299 Msa0127960:CDS
GGCTACACTTACAGCCATAG+TGG 0.547898 1_3:+57571709 Msa0127960:intron
ATTGTTTGCTGGTGTACCAC+GGG 0.549536 1_3:+57575428 Msa0127960:CDS
AAGGGATTTGAACATATCAA+AGG 0.551479 1_3:+57577915 Msa0127960:CDS
AAAGGAGGACAAATACTTGA+CGG 0.560929 1_3:-57572456 None:intergenic
TGCACAATAATGTATACAAG+TGG 0.561176 1_3:+57572492 Msa0127960:CDS
GCATCCGTGGGTTACTATCA+CGG 0.561373 1_3:+57572806 Msa0127960:CDS
AGGTTTCTACCTTCTAGACT+CGG 0.565052 1_3:+57578285 Msa0127960:exon
ATGTGCTACAAGCATACTAT+TGG 0.567263 1_3:+57578458 Msa0127960:three_prime_UTR
TTTCCATATCAAATGGAAGC+GGG 0.571957 1_3:-57577950 None:intergenic
ATGTATACAAGTGGAACTAG+TGG 0.575171 1_3:+57572501 Msa0127960:CDS
TCCACAATGGATTATCGCAA+TGG 0.583541 1_3:+57571088 Msa0127960:CDS
ACTTGTGCCTTTGTATGCCA+AGG 0.583881 1_3:+57576293 Msa0127960:CDS
CATTAGGTCAAAGCAAGGCT+AGG 0.588553 1_3:+57576197 Msa0127960:intron
GTGAAATCAGGATCCATTGG+AGG 0.590379 1_3:-57570343 None:intergenic
AAATCCTCTAAGAGATTGAA+AGG 0.590421 1_3:+57571595 Msa0127960:CDS
ACTAGCTTTAGTAAGAGGAA+TGG 0.591608 1_3:+57572560 Msa0127960:CDS
GCCGTGCTGTAATAGCATAT+TGG 0.592200 1_3:+57578509 Msa0127960:three_prime_UTR
ACCATAGCCTTGGCATACAA+AGG 0.601421 1_3:-57576300 None:intergenic
AAGAAGCCATAATAGATGGA+TGG 0.604745 1_3:+57576810 Msa0127960:CDS
GATGTGAGCTAAAGGGAGGA+AGG 0.614011 1_3:-57572744 None:intergenic
GTGCATATGTCATGAGCCAA+AGG 0.615739 1_3:-57572474 None:intergenic
AGATCTACTAGCCTTCAGAA+AGG 0.615866 1_3:+57576086 Msa0127960:CDS
ATGTGCATGCTAGGCAATGT+TGG 0.618977 1_3:+57576644 Msa0127960:CDS
TTGCTTTGTGTAGATGACTG+TGG 0.621448 1_3:+57572706 Msa0127960:intron
GCTTCTGCTTTAAAAGCATG+TGG 0.622653 1_3:+57570717 Msa0127960:CDS
CTTTCCATATCAAATGGAAG+CGG 0.623939 1_3:-57577951 None:intergenic
CACACACACAACCTTTCTGA+AGG 0.627067 1_3:-57576097 None:intergenic
GGTACACCAGCAAACAATGT+TGG 0.629012 1_3:-57575423 None:intergenic
CACACCATTAGGTCAAAGCA+AGG 0.630154 1_3:+57576192 Msa0127960:intron
GGAACTAGTGGAGATCCTAA+AGG 0.633228 1_3:+57572513 Msa0127960:CDS
GCCAATATGCTATTACAGCA+CGG 0.635300 1_3:-57578510 None:intergenic
TAACTGTATTCAATGAATTG+CGG 0.635370 1_3:+57576672 Msa0127960:CDS
AAACTTGGCTGGATGAACAA+AGG 0.640671 1_3:+57576033 Msa0127960:CDS
ACAATGGATTATCGCAATGG+AGG 0.642131 1_3:+57571091 Msa0127960:CDS
GGGCTTCACTTCATTAACTG+AGG 0.642336 1_3:+57571730 Msa0127960:CDS
CTGACACATATCTCACCACA+TGG 0.645144 1_3:-57576740 None:intergenic
AACTGAGGAAGAGAAAGATG+AGG 0.647032 1_3:+57571745 Msa0127960:CDS
GCTGGAGGAAGTTCCAGACA+TGG 0.647892 1_3:+57576694 Msa0127960:CDS
TGAAATCAGGATCCATTGGA+GGG 0.649258 1_3:-57570342 None:intergenic
TCCATTGCGATAATCCATTG+TGG 0.654182 1_3:-57571089 None:intergenic
ATGACCAAGAATTACACTGT+AGG 0.656425 1_3:+57569640 Msa0127960:CDS
TTACCAAGTGTGTCATAGAG+AGG 0.657682 1_3:-57571252 None:intergenic
ATATGTTTGGAAGACATACA+AGG 0.657772 1_3:+57570668 Msa0127960:CDS
GCTACACTTACAGCCATAGT+GGG 0.658633 1_3:+57571710 Msa0127960:intron
CTGGAGGAAGTTCCAGACAT+GGG 0.659695 1_3:+57576695 Msa0127960:CDS
ATGGATCTAACTGTCCACAA+TGG 0.660741 1_3:+57571075 Msa0127960:CDS
ATTCAATGAATTGCGGCTGG+AGG 0.661838 1_3:+57576679 Msa0127960:CDS
CATATGTCATGAGCCAAAGG+AGG 0.664582 1_3:-57572471 None:intergenic
CCTGAAAATATCCCAAGCAG+AGG 0.666120 1_3:-57570365 None:intergenic
GTGCCTCTCTATGACACACT+TGG 0.668273 1_3:+57571249 Msa0127960:CDS
CCAGGTTTGACAGAAACATG+TGG 0.679060 1_3:+57576593 Msa0127960:intron
GGATCTGAATGCGTTGCTGG+AGG 0.681374 1_3:+57575383 Msa0127960:intron
CAAGGATGTGAGCTAAAGGG+AGG 0.681394 1_3:-57572748 None:intergenic
GAAGAGAAAATCAACCTGTG+TGG 0.682894 1_3:-57576835 None:intergenic
TAGGTCAAAGCAAGGCTAGG+CGG 0.689698 1_3:+57576200 Msa0127960:intron
TGCAGGTATCAAGAAAGCAG+TGG 0.690402 1_3:+57575615 Msa0127960:intron
CCTCTTGGAACTCCTCCATG+TGG 0.694715 1_3:+57576725 Msa0127960:CDS
TACCCCGTGATAGTAACCCA+CGG 0.697826 1_3:-57572810 None:intergenic
ATAGATGGATGGTTCCACAC+AGG 0.705801 1_3:+57576821 Msa0127960:CDS
GTTAGACTAATAATATCTGG+AGG 0.707528 1_3:+57576227 Msa0127960:CDS
TGTGGTGAGATATGTGTCAG+AGG 0.711445 1_3:+57576743 Msa0127960:CDS
CCACATGGAGGAGTTCCAAG+AGG 0.716589 1_3:-57576725 None:intergenic
ATCCGTGGGTTACTATCACG+GGG 0.722483 1_3:+57572808 Msa0127960:CDS
ACACATATCTCACCACATGG+AGG 0.748292 1_3:-57576737 None:intergenic
TGGCACAACTAAATCCAGTG+AGG 0.766617 1_3:+57575635 Msa0127960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATAAATTTTTTAAAA+CGG + chr1_3:57573639-57573658 Msa0127960:intron 0.0%
!! TTATTTATAGTATAAAAAAG+AGG - chr1_3:57569745-57569764 None:intergenic 10.0%
!!! AATTAATTAATTCTTTAGAA+TGG + chr1_3:57570162-57570181 Msa0127960:intron 10.0%
!! ATTAATAAATATTTGTATCA+AGG - chr1_3:57571467-57571486 None:intergenic 10.0%
!! TATGAATTAATTAAAGATTA+AGG - chr1_3:57572619-57572638 None:intergenic 10.0%
!! CCAAAAAAATAAAAATAAAT+TGG - chr1_3:57572921-57572940 None:intergenic 10.0%
!!! CCAATTTATTTTTATTTTTT+TGG + chr1_3:57572918-57572937 Msa0127960:intron 10.0%
!! AAATCTATTAAAATTAAGTA+AGG - chr1_3:57572993-57573012 None:intergenic 10.0%
!! CCAAAAAAATAAAAATAAAT+TGG - chr1_3:57572921-57572940 None:intergenic 10.0%
!!! CCAATTTATTTTTATTTTTT+TGG + chr1_3:57572918-57572937 Msa0127960:intron 10.0%
!! AAATCTATTAAAATTAAGTA+AGG - chr1_3:57572993-57573012 None:intergenic 10.0%
!! CCAAAAAAATAAAAATAAAT+TGG - chr1_3:57572921-57572940 None:intergenic 10.0%
!!! CCAATTTATTTTTATTTTTT+TGG + chr1_3:57572918-57572937 Msa0127960:intron 10.0%
!! AAATCTATTAAAATTAAGTA+AGG - chr1_3:57572993-57573012 None:intergenic 10.0%
!! TTCAAAAATTTAAAAGTTTA+AGG - chr1_3:57573541-57573560 None:intergenic 10.0%
!! TATATTACGTAATAAAATAT+GGG - chr1_3:57574106-57574125 None:intergenic 10.0%
!! ATATATTACGTAATAAAATA+TGG - chr1_3:57574107-57574126 None:intergenic 10.0%
!!! AATTTTTTTTTTTGTTTTGA+AGG + chr1_3:57575492-57575511 Msa0127960:intron 10.0%
!! TGTCAAAAAAAAAAAAATAT+AGG - chr1_3:57575709-57575728 None:intergenic 10.0%
!! TTAGAGTTATAAATAAATAT+AGG - chr1_3:57575742-57575761 None:intergenic 10.0%
!!! ATTTATAACTCTAAAAAAAA+TGG + chr1_3:57575748-57575767 Msa0127960:intron 10.0%
!!! TGAAATTTAATTAATTTTAG+AGG + chr1_3:57576450-57576469 Msa0127960:intron 10.0%
!!! AAAATAATAGAAATATTTTG+AGG - chr1_3:57576866-57576885 None:intergenic 10.0%
!!! TATGTTTTTTATTTAAGATT+TGG + chr1_3:57577173-57577192 Msa0127960:intron 10.0%
!!! ATGTTTTTTATTTAAGATTT+GGG + chr1_3:57577174-57577193 Msa0127960:intron 10.0%
!! AATTTATTTCACTGTTTATA+AGG + chr1_3:57570389-57570408 Msa0127960:CDS 15.0%
!!! ATTGTTTTTTGTTTTGTATT+TGG + chr1_3:57570624-57570643 Msa0127960:intron 15.0%
!!! AATCATGTTGTTTATAATAT+TGG + chr1_3:57571194-57571213 Msa0127960:intron 15.0%
!!! TCTTTTTTATATTAGCTATT+TGG + chr1_3:57571882-57571901 Msa0127960:intron 15.0%
!! AATTAATTTCAATTTGTCAT+TGG - chr1_3:57572649-57572668 None:intergenic 15.0%
!! AAATAAATTGGTCAATAAAT+GGG - chr1_3:57572909-57572928 None:intergenic 15.0%
!! AAAATAAATTGGTCAATAAA+TGG - chr1_3:57572910-57572929 None:intergenic 15.0%
!!! TAAAATTTCCCAATTTTATA+GGG - chr1_3:57572962-57572981 None:intergenic 15.0%
!!! TTAAAATTTCCCAATTTTAT+AGG - chr1_3:57572963-57572982 None:intergenic 15.0%
!! AAATAAATTGGTCAATAAAT+GGG - chr1_3:57572909-57572928 None:intergenic 15.0%
!! AAAATAAATTGGTCAATAAA+TGG - chr1_3:57572910-57572929 None:intergenic 15.0%
!!! TAAAATTTCCCAATTTTATA+GGG - chr1_3:57572962-57572981 None:intergenic 15.0%
!!! TTAAAATTTCCCAATTTTAT+AGG - chr1_3:57572963-57572982 None:intergenic 15.0%
!! AAATAAATTGGTCAATAAAT+GGG - chr1_3:57572909-57572928 None:intergenic 15.0%
!! AAAATAAATTGGTCAATAAA+TGG - chr1_3:57572910-57572929 None:intergenic 15.0%
!!! TAAAATTTCCCAATTTTATA+GGG - chr1_3:57572962-57572981 None:intergenic 15.0%
!!! TTAAAATTTCCCAATTTTAT+AGG - chr1_3:57572963-57572982 None:intergenic 15.0%
!!! ATTTTTGAACGATTTTTTTT+AGG + chr1_3:57573552-57573571 Msa0127960:intron 15.0%
!!! AATTAAACAAATTTGATTTG+AGG + chr1_3:57573797-57573816 Msa0127960:intron 15.0%
!! AGAACTATTAAAATTAAGTA+AGG + chr1_3:57573862-57573881 Msa0127960:intron 15.0%
!!! TTAAAATGTCTCAATTTTAT+AGG + chr1_3:57573892-57573911 Msa0127960:intron 15.0%
!!! TAAAATGTCTCAATTTTATA+GGG + chr1_3:57573893-57573912 Msa0127960:intron 15.0%
!! GGATACTAAAAAAAATTATA+TGG + chr1_3:57573981-57574000 Msa0127960:intron 15.0%
!! TTAAATTGAAAGAACAATAA+AGG - chr1_3:57574140-57574159 None:intergenic 15.0%
!!! TATAAAATTACGTTTAAAGT+TGG + chr1_3:57574235-57574254 Msa0127960:intron 15.0%
!!! TTCACAAAATGTTTTTTTTA+AGG - chr1_3:57574460-57574479 None:intergenic 15.0%
!! TCATATATAGATACAAAATA+GGG + chr1_3:57574637-57574656 Msa0127960:intron 15.0%
!!! CTATTTTTTCAGAATTTATT+TGG - chr1_3:57574862-57574881 None:intergenic 15.0%
!! GAATTCTTTCAAAAAAAAAA+TGG + chr1_3:57575772-57575791 Msa0127960:intron 15.0%
!!! AAAAAAATGGAGAATTATTT+TGG + chr1_3:57575785-57575804 Msa0127960:intron 15.0%
!!! AAAAAATGGAGAATTATTTT+GGG + chr1_3:57575786-57575805 Msa0127960:intron 15.0%
!!! TTTTTTTTTATGAGTTTGTT+TGG + chr1_3:57575956-57575975 Msa0127960:intron 15.0%
!!! ACAAAATAGGATTTATTTTT+GGG - chr1_3:57576001-57576020 None:intergenic 15.0%
!!! TATTTCTATTATTTTCTTCT+TGG + chr1_3:57576871-57576890 Msa0127960:intron 15.0%
!! TACAAATATATTTAACTCTT+AGG + chr1_3:57577595-57577614 Msa0127960:intron 15.0%
!!! AAAGAAAATTTTAATGTAAC+AGG - chr1_3:57577711-57577730 None:intergenic 15.0%
!!! GTTACATTAAAATTTTCTTT+AGG + chr1_3:57577711-57577730 Msa0127960:intron 15.0%
!! ATATATATCTTATGTTAAAG+AGG + chr1_3:57578092-57578111 Msa0127960:intron 15.0%
!! TATATATCTTATGTTAAAGA+GGG + chr1_3:57578093-57578112 Msa0127960:intron 15.0%
!!! GACTTTTTTTTTTTTAGAGA+CGG - chr1_3:57570084-57570103 None:intergenic 20.0%
!! ATTTAGTAAGCAACAATAAA+TGG + chr1_3:57570131-57570150 Msa0127960:intron 20.0%
!!! TTTTTAGTGTTATGTAACTT+AGG + chr1_3:57570569-57570588 Msa0127960:intron 20.0%
!! TACTATAATGTAAATAGACA+TGG - chr1_3:57570972-57570991 None:intergenic 20.0%
!!! TATTATTGATGGTCTTATAT+AGG + chr1_3:57571034-57571053 Msa0127960:intron 20.0%
!!! ATTATTGATGGTCTTATATA+GGG + chr1_3:57571035-57571054 Msa0127960:intron 20.0%
!!! AATTTCTTCTCTTTAACTTA+TGG + chr1_3:57571299-57571318 Msa0127960:intron 20.0%
!! CTAAGTTTCAATTTCAATAT+TGG + chr1_3:57571625-57571644 Msa0127960:intron 20.0%
!! TTATGTATGTTATCTAAGTT+TGG + chr1_3:57571675-57571694 Msa0127960:intron 20.0%
!! CATGTAAACTATATGAAAAA+TGG - chr1_3:57572675-57572694 None:intergenic 20.0%
!!! TTTTTGATCCCTATAAAATT+GGG + chr1_3:57572951-57572970 Msa0127960:intron 20.0%
!!! TTTTTGATCCCTATAAAATT+GGG + chr1_3:57572951-57572970 Msa0127960:intron 20.0%
!!! TTTTTGATCCCTATAAAATT+GGG + chr1_3:57572951-57572970 Msa0127960:intron 20.0%
!! CATAAAAAATAGGGTTAAAT+AGG - chr1_3:57573927-57573946 None:intergenic 20.0%
!!! AGCATTTTGCATAAAAAATA+GGG - chr1_3:57573936-57573955 None:intergenic 20.0%
!!! TAGCATTTTGCATAAAAAAT+AGG - chr1_3:57573937-57573956 None:intergenic 20.0%
!!! AAGTCAAAAAAGTTTCTTTT+TGG + chr1_3:57574041-57574060 Msa0127960:intron 20.0%
!! TGTAAAAGAAATATCTAATG+TGG + chr1_3:57574284-57574303 Msa0127960:intron 20.0%
!!! TCTAATGTGGTAATTATTTT+TGG + chr1_3:57574297-57574316 Msa0127960:intron 20.0%
!! CTCATATATAGATACAAAAT+AGG + chr1_3:57574636-57574655 Msa0127960:intron 20.0%
!!! CATTTTGTAACTTCTAAATA+TGG - chr1_3:57574790-57574809 None:intergenic 20.0%
!! TCAAAGTGTACAAATAAATA+TGG + chr1_3:57574941-57574960 Msa0127960:intron 20.0%
!! CAAAGTGTACAAATAAATAT+GGG + chr1_3:57574942-57574961 Msa0127960:intron 20.0%
!! TATATATAGATTAATATCCC+TGG - chr1_3:57575219-57575238 None:intergenic 20.0%
!! TATTATAGTGTTAGTTAGTT+AGG - chr1_3:57575309-57575328 None:intergenic 20.0%
!! CTAACACTATAATACTTATT+CGG + chr1_3:57575315-57575334 Msa0127960:intron 20.0%
!! AGTTAACATCTTGTAATTTA+TGG + chr1_3:57575345-57575364 Msa0127960:intron 20.0%
!!! GTTTTTGAAAAAGTTTATGA+AGG + chr1_3:57575450-57575469 Msa0127960:CDS 20.0%
!! TTGTTACATTAGGTATTAAT+GGG - chr1_3:57575891-57575910 None:intergenic 20.0%
!! TTTGTTACATTAGGTATTAA+TGG - chr1_3:57575892-57575911 None:intergenic 20.0%
!!! TCGTTTATATTTGTTACATT+AGG - chr1_3:57575901-57575920 None:intergenic 20.0%
!!! CAAAATAGGATTTATTTTTG+GGG - chr1_3:57576000-57576019 None:intergenic 20.0%
!!! CACAAAATAGGATTTATTTT+TGG - chr1_3:57576002-57576021 None:intergenic 20.0%
!! TACTGTATAAAACACAAAAT+AGG - chr1_3:57576014-57576033 None:intergenic 20.0%
!! AGTCATTAAAAATGTATTAG+AGG + chr1_3:57576398-57576417 Msa0127960:intron 20.0%
!!! AAAAAGTACATGTATGTATT+TGG - chr1_3:57576537-57576556 None:intergenic 20.0%
!!! TTATTTAAGATTTGGGTATA+TGG + chr1_3:57577181-57577200 Msa0127960:intron 20.0%
!!! TATTTAAGATTTGGGTATAT+GGG + chr1_3:57577182-57577201 Msa0127960:intron 20.0%
!! ATTGAACAAAATTTATGCAT+GGG - chr1_3:57577441-57577460 None:intergenic 20.0%
!! AATTGAACAAAATTTATGCA+TGG - chr1_3:57577442-57577461 None:intergenic 20.0%
!!! AGTCATTATTTTGTTTTTGA+AGG + chr1_3:57577464-57577483 Msa0127960:intron 20.0%
!! ATATATCTTATGTTAAAGAG+GGG + chr1_3:57578094-57578113 Msa0127960:intron 20.0%
!! AATGAAGAGCTTTTCAATTA+AGG + chr1_3:57570240-57570259 Msa0127960:CDS 25.0%
! ATTTCACTGTTTATAAGGTT+TGG + chr1_3:57570394-57570413 Msa0127960:intron 25.0%
!! TTTGGTTTATGTTCATAGAT+AGG + chr1_3:57570642-57570661 Msa0127960:intron 25.0%
! TAAAACACGAATACGAAATT+TGG - chr1_3:57570878-57570897 None:intergenic 25.0%
! ATGACCATTTGATTAAGATA+AGG - chr1_3:57570920-57570939 None:intergenic 25.0%
! TTCTCAATGTCTATTATTGA+TGG + chr1_3:57571023-57571042 Msa0127960:intron 25.0%
! CTTATATAGGGTTCAAAAAT+TGG + chr1_3:57571047-57571066 Msa0127960:intron 25.0%
! GGTTCAAAAATTGGAATTTA+TGG + chr1_3:57571056-57571075 Msa0127960:CDS 25.0%
! GTTGTTTATAATATTGGCAT+AGG + chr1_3:57571200-57571219 Msa0127960:intron 25.0%
!!! TGTTTTTGTTCAAGATAAGA+AGG + chr1_3:57571403-57571422 Msa0127960:CDS 25.0%
! ATAAAATAATCCAACCTGAA+AGG + chr1_3:57571917-57571936 Msa0127960:intron 25.0%
!!! TTTAATTTTGTCAAACTCAC+GGG - chr1_3:57572196-57572215 None:intergenic 25.0%
!!! CTTTAATTTTGTCAAACTCA+CGG - chr1_3:57572197-57572216 None:intergenic 25.0%
!!! AAAGTAAATTCTAAGATCTC+CGG - chr1_3:57572328-57572347 None:intergenic 25.0%
! TCTTAGAATTTACTTTGTAC+TGG + chr1_3:57572332-57572351 Msa0127960:intron 25.0%
! GAAACATTATAATGCATGTT+TGG - chr1_3:57572379-57572398 None:intergenic 25.0%
!!! GAAGAATATTTTTTCCGTAA+CGG + chr1_3:57572782-57572801 Msa0127960:CDS 25.0%
!! GTTTTTGATCCCTATAAAAT+TGG + chr1_3:57572950-57572969 Msa0127960:intron 25.0%
!! GTTTTTGATCCCTATAAAAT+TGG + chr1_3:57572950-57572969 Msa0127960:intron 25.0%
!! GTTTTTGATCCCTATAAAAT+TGG + chr1_3:57572950-57572969 Msa0127960:intron 25.0%
!!! TAAACAAATTTGATTTGAGG+AGG + chr1_3:57573800-57573819 Msa0127960:intron 25.0%
!!! AAACAAATTTGATTTGAGGA+GGG + chr1_3:57573801-57573820 Msa0127960:intron 25.0%
!!! GAGTGCAGAATTTTTTTTTA+TGG + chr1_3:57573833-57573852 Msa0127960:intron 25.0%
!! AATAGGGTTAAATAGGTTTT+TGG - chr1_3:57573920-57573939 None:intergenic 25.0%
!! TTTTTATGCAAAATGCTAAC+CGG + chr1_3:57573939-57573958 Msa0127960:intron 25.0%
! ATTGAAAAAATGTAGTCACA+CGG - chr1_3:57574760-57574779 None:intergenic 25.0%
! AATCACACAACTAAAAAATG+TGG + chr1_3:57574883-57574902 Msa0127960:intron 25.0%
! ACATCTTGTAATTTATGGAA+TGG + chr1_3:57575350-57575369 Msa0127960:intron 25.0%
!!! TTCAATCAATTTTTTGTTGC+AGG + chr1_3:57575598-57575617 Msa0127960:intron 25.0%
!! TGTGTTTTATACAGTAAACT+TGG + chr1_3:57576018-57576037 Msa0127960:intron 25.0%
!! ATACATTTTTAATGACTCGA+TGG - chr1_3:57576395-57576414 None:intergenic 25.0%
! TAACTGTATTCAATGAATTG+CGG + chr1_3:57576672-57576691 Msa0127960:CDS 25.0%
!! TTGTTAACTCAGGATTTTTA+TGG - chr1_3:57576790-57576809 None:intergenic 25.0%
!!! TAATAGAAATATTTTGAGGC+AGG - chr1_3:57576862-57576881 None:intergenic 25.0%
! ATTGTTTGGTATATATCCTA+GGG + chr1_3:57576921-57576940 Msa0127960:intron 25.0%
! ATAATCCTCATAATACCATT+AGG - chr1_3:57576965-57576984 None:intergenic 25.0%
!!! AACATTTTCAAGATACTCAA+GGG - chr1_3:57577035-57577054 None:intergenic 25.0%
!!! AAACATTTTCAAGATACTCA+AGG - chr1_3:57577036-57577055 None:intergenic 25.0%
! ATACTTACATCTTCAACTAT+TGG - chr1_3:57577070-57577089 None:intergenic 25.0%
! TTATTAGCAACATCTTCATT+TGG - chr1_3:57577244-57577263 None:intergenic 25.0%
! TAGAGACTAAAATTTCTACA+GGG + chr1_3:57577545-57577564 Msa0127960:intron 25.0%
! CAGAAATATACTCAATATAG+TGG - chr1_3:57577666-57577685 None:intergenic 25.0%
! CAACATGATCAAGTATTATA+AGG + chr1_3:57578010-57578029 Msa0127960:CDS 25.0%
!!! AATTTGTTACTATTTGTTCG+AGG - chr1_3:57578152-57578171 None:intergenic 25.0%
!!! AAATTTGTTGACATTGTAAC+AGG + chr1_3:57578210-57578229 Msa0127960:intron 25.0%
! TTTAACTTAATGATGCTAGC+TGG - chr1_3:57570060-57570079 None:intergenic 30.0%
! TTTTCAATTAAGGTTGAGGA+AGG + chr1_3:57570250-57570269 Msa0127960:CDS 30.0%
TTGTATGTCTTCCAAACATA+TGG - chr1_3:57570669-57570688 None:intergenic 30.0%
ATATGTTTGGAAGACATACA+AGG + chr1_3:57570668-57570687 Msa0127960:CDS 30.0%
TGATTGAACAATTATCAGTG+TGG - chr1_3:57570843-57570862 None:intergenic 30.0%
ATTGTTCAATCAAGATCAGA+CGG + chr1_3:57570851-57570870 Msa0127960:intron 30.0%
CCATTTGATTAAGATAAGGA+CGG - chr1_3:57570916-57570935 None:intergenic 30.0%
TAATCAAATGGTCATCAATG+TGG + chr1_3:57570925-57570944 Msa0127960:intron 30.0%
AGACATTGAGAAGATTTCAT+TGG - chr1_3:57571015-57571034 None:intergenic 30.0%
TCAAGATAAGAAGGTTAAAG+AGG + chr1_3:57571412-57571431 Msa0127960:CDS 30.0%
! CTGCAGACAATATATGTTTT+TGG - chr1_3:57571557-57571576 None:intergenic 30.0%
! AAATCCTCTAAGAGATTGAA+AGG + chr1_3:57571595-57571614 Msa0127960:CDS 30.0%
ATTACCTTTCAATCTCTTAG+AGG - chr1_3:57571602-57571621 None:intergenic 30.0%
CTGGAATTAAACCATATACA+TGG + chr1_3:57571777-57571796 Msa0127960:CDS 30.0%
! ACGAATTGATTCCATGTATA+TGG - chr1_3:57571791-57571810 None:intergenic 30.0%
ATGGAATCAATTCGTACAAA+AGG + chr1_3:57571796-57571815 Msa0127960:CDS 30.0%
AATCAATTCGTACAAAAGGT+AGG + chr1_3:57571800-57571819 Msa0127960:intron 30.0%
! AGGTAGGTGTATGTTATTTA+AGG + chr1_3:57571816-57571835 Msa0127960:intron 30.0%
TCATTGATCGCATAAATTTC+AGG - chr1_3:57572035-57572054 None:intergenic 30.0%
TATGCGATCAATGATGTTTA+AGG + chr1_3:57572041-57572060 Msa0127960:intron 30.0%
ATGCGATCAATGATGTTTAA+GGG + chr1_3:57572042-57572061 Msa0127960:intron 30.0%
AACTTGCATGATTTGATTGA+AGG - chr1_3:57572144-57572163 None:intergenic 30.0%
!! AAGTAAATTCTAAGATCTCC+GGG - chr1_3:57572327-57572346 None:intergenic 30.0%
! GGACATTTCTTCTTTTGATA+AGG - chr1_3:57572358-57572377 None:intergenic 30.0%
TAATACGAAACAATCCTTAC+AGG + chr1_3:57572422-57572441 Msa0127960:intron 30.0%
AATACGAAACAATCCTTACA+GGG + chr1_3:57572423-57572442 Msa0127960:intron 30.0%
TGCACAATAATGTATACAAG+TGG + chr1_3:57572492-57572511 Msa0127960:CDS 30.0%
TGTGTTAAAACAACACCTTT+AGG - chr1_3:57572531-57572550 None:intergenic 30.0%
! TCTTTTCATGGAACAATTTG+AGG + chr1_3:57572584-57572603 Msa0127960:CDS 30.0%
ATTCTTCAATACAACGATCA+AGG - chr1_3:57572769-57572788 None:intergenic 30.0%
AGTACTTGTAGAAAGATAGA+CGG + chr1_3:57572875-57572894 Msa0127960:intron 30.0%
AGTACTTGTAGAAAGATAGA+CGG + chr1_3:57572875-57572894 Msa0127960:intron 30.0%
AGTACTTGTAGAAAGATAGA+CGG + chr1_3:57572875-57572894 Msa0127960:intron 30.0%
AAACAAACTTCGTTGTAACA+GGG - chr1_3:57573512-57573531 None:intergenic 30.0%
TAAACAAACTTCGTTGTAAC+AGG - chr1_3:57573513-57573532 None:intergenic 30.0%
AAAGAAGTCTTTCTTGAGAA+TGG + chr1_3:57574613-57574632 Msa0127960:intron 30.0%
CCAAATACGTAAGGAATAAA+GGG - chr1_3:57575161-57575180 None:intergenic 30.0%
!!! TAAACTTTTTCAAAAACCCG+TGG - chr1_3:57575447-57575466 None:intergenic 30.0%
TGAAAAAGTTTATGAAGGCA+AGG + chr1_3:57575455-57575474 Msa0127960:CDS 30.0%
! TTTTATACAGTAAACTTGGC+TGG + chr1_3:57576022-57576041 Msa0127960:intron 30.0%
CGTGTTAGACTAATAATATC+TGG + chr1_3:57576224-57576243 Msa0127960:CDS 30.0%
GTTAGACTAATAATATCTGG+AGG + chr1_3:57576227-57576246 Msa0127960:CDS 30.0%
!!! CAATTTTTGAGATAGTTCCA+AGG - chr1_3:57576331-57576350 None:intergenic 30.0%
TATTCCCTCTGAACTTAATT+TGG + chr1_3:57576510-57576529 Msa0127960:intron 30.0%
ACAATGATACACTGACATTA+AGG + chr1_3:57576562-57576581 Msa0127960:intron 30.0%
GACATTAAGGTTAATATTCC+AGG + chr1_3:57576575-57576594 Msa0127960:intron 30.0%
ACAAAAGAAGCCATAATAGA+TGG + chr1_3:57576806-57576825 Msa0127960:CDS 30.0%
CATTGTTTGGTATATATCCT+AGG + chr1_3:57576920-57576939 Msa0127960:intron 30.0%
TTGTTTGGTATATATCCTAG+GGG + chr1_3:57576922-57576941 Msa0127960:intron 30.0%
GTATTATGAGGATTATTGAC+AGG + chr1_3:57576969-57576988 Msa0127960:CDS 30.0%
AATCTTGTTAAGCTTTCTCA+AGG + chr1_3:57576998-57577017 Msa0127960:CDS 30.0%
ATGAAGATGTTGCTAATAAG+TGG + chr1_3:57577245-57577264 Msa0127960:intron 30.0%
TGAAGATGTTGCTAATAAGT+GGG + chr1_3:57577246-57577265 Msa0127960:intron 30.0%
ATAGCACATATCTCTTCAAT+TGG - chr1_3:57577321-57577340 None:intergenic 30.0%
!!! TTTTTGAAGGCATTAAATGC+AGG + chr1_3:57577477-57577496 Msa0127960:intron 30.0%
GTAGAGACTAAAATTTCTAC+AGG + chr1_3:57577544-57577563 Msa0127960:intron 30.0%
TTTCTGTATCTAGTGTTATG+TGG + chr1_3:57577680-57577699 Msa0127960:intron 30.0%
ATCATTTCATCAATAGTGCA+TGG - chr1_3:57577784-57577803 None:intergenic 30.0%
CAAATTTGTACTACCAAGTT+TGG + chr1_3:57577833-57577852 Msa0127960:intron 30.0%
TTAGAGATTCATACCAAACT+TGG - chr1_3:57577849-57577868 None:intergenic 30.0%
TAGAGGCAGAAAAAATGAAA+AGG - chr1_3:57577883-57577902 None:intergenic 30.0%
CCTCTATGAAATTAGTTGAA+GGG + chr1_3:57577897-57577916 Msa0127960:intron 30.0%
AAGGGATTTGAACATATCAA+AGG + chr1_3:57577915-57577934 Msa0127960:CDS 30.0%
AAGTCTCTTTCCATATCAAA+TGG - chr1_3:57577960-57577979 None:intergenic 30.0%
ATTTGATATGGAAAGAGACT+TGG + chr1_3:57577959-57577978 Msa0127960:CDS 30.0%
CTGCAACATTGAAAAAGAAA+AGG + chr1_3:57577985-57578004 Msa0127960:CDS 30.0%
AAGAGACAACATCTTAGTAA+GGG - chr1_3:57578058-57578077 None:intergenic 30.0%
AAAGAGACAACATCTTAGTA+AGG - chr1_3:57578059-57578078 None:intergenic 30.0%
!! GGAGTAATAAGGTTGATATT+GGG + chr1_3:57578115-57578134 Msa0127960:intron 30.0%
GAACTATACAAAAGTTTGAC+TGG + chr1_3:57578244-57578263 Msa0127960:CDS 30.0%
AGGTAGAAACCTCAAAATTT+AGG - chr1_3:57578277-57578296 None:intergenic 30.0%
TAAGTACAACAAGCAACTTT+AGG - chr1_3:57578357-57578376 None:intergenic 30.0%
!! CACTTGTTTTCTTCAAACAT+GGG - chr1_3:57578405-57578424 None:intergenic 30.0%
!! ACACTTGTTTTCTTCAAACA+TGG - chr1_3:57578406-57578425 None:intergenic 30.0%
!! CATACTATTGGTGTTATGTT+TGG + chr1_3:57578470-57578489 Msa0127960:three_prime_UTR 30.0%
GAGAAAATGAATTGCTCTTT+AGG + chr1_3:57578547-57578566 Msa0127960:three_prime_UTR 30.0%
ATGACCAAGAATTACACTGT+AGG + chr1_3:57569640-57569659 Msa0127960:CDS 35.0%
GAATCCTACAGTGTAATTCT+TGG - chr1_3:57569647-57569666 None:intergenic 35.0%
TCTCCGAATACAATGTTAAG+AGG + chr1_3:57569665-57569684 Msa0127960:CDS 35.0%
CCACCTCTTAACATTGTATT+CGG - chr1_3:57569671-57569690 None:intergenic 35.0%
! AAGAGGTGTAGTTGTAAATG+TGG - chr1_3:57569728-57569747 None:intergenic 35.0%
! GAGCTTTTCAATTAAGGTTG+AGG + chr1_3:57570246-57570265 Msa0127960:CDS 35.0%
AATTAAGGTTGAGGAAGGAA+AGG + chr1_3:57570255-57570274 Msa0127960:CDS 35.0%
GAAGGAAAGGAAGGAAAAAA+TGG + chr1_3:57570268-57570287 Msa0127960:CDS 35.0%
AAAAATGGCATGCTTTCTGT+TGG + chr1_3:57570283-57570302 Msa0127960:CDS 35.0%
!! CATTTTTGGAGAGAAGGTTA+CGG - chr1_3:57570318-57570337 None:intergenic 35.0%
!! GGAATTCATTTTTGGAGAGA+AGG - chr1_3:57570324-57570343 None:intergenic 35.0%
! CATTGGAGGGAATTCATTTT+TGG - chr1_3:57570332-57570351 None:intergenic 35.0%
CAAAAATGAATTCCCTCCAA+TGG + chr1_3:57570330-57570349 Msa0127960:CDS 35.0%
! GCGTAAAATTGTTGATGGAA+AGG + chr1_3:57570516-57570535 Msa0127960:CDS 35.0%
CATAGATAGGACCATATGTT+TGG + chr1_3:57570655-57570674 Msa0127960:intron 35.0%
CCGTCCTTATCTTAATCAAA+TGG + chr1_3:57570913-57570932 Msa0127960:intron 35.0%
!! TGCATCAAAAGCACTTAATC+AGG - chr1_3:57571336-57571355 None:intergenic 35.0%
! TGATTAAGTGCTTTTGATGC+AGG + chr1_3:57571335-57571354 Msa0127960:intron 35.0%
AAATGCCTTCAATTGTTAGC+TGG - chr1_3:57571657-57571676 None:intergenic 35.0%
CTAAGTTTGGTTGTTGTATG+TGG + chr1_3:57571688-57571707 Msa0127960:intron 35.0%
GTCTACAATTGAGATTTCTC+TGG + chr1_3:57571963-57571982 Msa0127960:intron 35.0%
GGAATCTTGATCCACAATAA+GGG + chr1_3:57572076-57572095 Msa0127960:intron 35.0%
AAAGTTACACTCCCTTATTG+TGG - chr1_3:57572090-57572109 None:intergenic 35.0%
! ATGCACTCCATTAGTCTATT+TGG + chr1_3:57572258-57572277 Msa0127960:intron 35.0%
AAAGGAGGACAAATACTTGA+CGG - chr1_3:57572459-57572478 None:intergenic 35.0%
ATGTATACAAGTGGAACTAG+TGG + chr1_3:57572501-57572520 Msa0127960:CDS 35.0%
!! AACGTACTAGCTTTAGTAAG+AGG + chr1_3:57572555-57572574 Msa0127960:CDS 35.0%
!! ACTAGCTTTAGTAAGAGGAA+TGG + chr1_3:57572560-57572579 Msa0127960:CDS 35.0%
! AAGAGGAATGGATCTTTTCA+TGG + chr1_3:57572572-57572591 Msa0127960:CDS 35.0%
CTACACACACAGTATTTAAG+TGG - chr1_3:57574327-57574346 None:intergenic 35.0%
TGAAGAGTCATGAGATGATA+AGG + chr1_3:57574476-57574495 Msa0127960:intron 35.0%
TAGATACAAAATAGGGACAG+AGG + chr1_3:57574644-57574663 Msa0127960:intron 35.0%
TAAATATGGGTGTCAACATG+TGG + chr1_3:57574955-57574974 Msa0127960:intron 35.0%
! AAGCATTGTGACATTGTGAT+TGG - chr1_3:57575091-57575110 None:intergenic 35.0%
! AAGCATTGTGACATTGTGAT+TGG + chr1_3:57575091-57575110 Msa0127960:intron 35.0%
CCCTTTATTCCTTACGTATT+TGG + chr1_3:57575158-57575177 Msa0127960:intron 35.0%
GCCAAATACGTAAGGAATAA+AGG - chr1_3:57575162-57575181 None:intergenic 35.0%
!!! ATGTTTTGGCCAAATACGTA+AGG - chr1_3:57575170-57575189 None:intergenic 35.0%
ATAGATTAATATCCCTGGAC+CGG - chr1_3:57575214-57575233 None:intergenic 35.0%
ACTCTATTAGTTAGTGTAGC+TGG - chr1_3:57575251-57575270 None:intergenic 35.0%
! TTATGGAATGGTTTGCATGA+AGG + chr1_3:57575362-57575381 Msa0127960:intron 35.0%
TTAAAGCCAACATTGTTTGC+TGG + chr1_3:57575417-57575436 Msa0127960:CDS 35.0%
TTACTAGTACATGCAAGAGA+AGG - chr1_3:57576139-57576158 None:intergenic 35.0%
TTTGACCTAATGGTGTGTAA+AGG - chr1_3:57576189-57576208 None:intergenic 35.0%
TTCTTCAATCTCAGAGCTTA+AGG - chr1_3:57576258-57576277 None:intergenic 35.0%
!! TCACTCTTGTCCTTTTTAGT+TGG + chr1_3:57576368-57576387 Msa0127960:intron 35.0%
TGGTCCAAATTAAGTTCAGA+GGG - chr1_3:57576517-57576536 None:intergenic 35.0%
TTGGTCCAAATTAAGTTCAG+AGG - chr1_3:57576518-57576537 None:intergenic 35.0%
TCTGGAAATGTAAGAGTAGT+TGG - chr1_3:57576620-57576639 None:intergenic 35.0%
! ATGGCTTCTTTTGTTAACTC+AGG - chr1_3:57576800-57576819 None:intergenic 35.0%
AAGAAGCCATAATAGATGGA+TGG + chr1_3:57576810-57576829 Msa0127960:CDS 35.0%
! GATTGTGTTGTGTCATTGTT+TGG + chr1_3:57576907-57576926 Msa0127960:intron 35.0%
ATTGGAGAAATGCTTCCTAA+TGG + chr1_3:57576947-57576966 Msa0127960:CDS 35.0%
TGCTTCCTAATGGTATTATG+AGG + chr1_3:57576957-57576976 Msa0127960:CDS 35.0%
GAATAGCTTCAAGTCAATAC+TGG + chr1_3:57577204-57577223 Msa0127960:intron 35.0%
AATAAGTGGGCATATGCAAA+TGG + chr1_3:57577259-57577278 Msa0127960:intron 35.0%
TGAGAAACAAGGTAACACAT+AGG + chr1_3:57577362-57577381 Msa0127960:intron 35.0%
GCCTCTATGAAATTAGTTGA+AGG + chr1_3:57577896-57577915 Msa0127960:intron 35.0%
CCCTTCAACTAATTTCATAG+AGG - chr1_3:57577900-57577919 None:intergenic 35.0%
TTTCCATATCAAATGGAAGC+GGG - chr1_3:57577953-57577972 None:intergenic 35.0%
CTTTCCATATCAAATGGAAG+CGG - chr1_3:57577954-57577973 None:intergenic 35.0%
TGTTAAAGAGGGGAGTAATA+AGG + chr1_3:57578104-57578123 Msa0127960:intron 35.0%
!! GGGAGTAATAAGGTTGATAT+TGG + chr1_3:57578114-57578133 Msa0127960:intron 35.0%
! GGAGATAAGCCTAAATTTTG+AGG + chr1_3:57578265-57578284 Msa0127960:CDS 35.0%
ATGTGCTACAAGCATACTAT+TGG + chr1_3:57578458-57578477 Msa0127960:three_prime_UTR 35.0%
ATGTTTGGATCCTACTAGTA+TGG + chr1_3:57578485-57578504 Msa0127960:three_prime_UTR 35.0%
CCGAATACAATGTTAAGAGG+TGG + chr1_3:57569668-57569687 Msa0127960:intron 40.0%
GAGTGAAACCTTAGTATGTG+AGG - chr1_3:57569835-57569854 None:intergenic 40.0%
CTAAGGTTTCACTCACTCTT+TGG + chr1_3:57569841-57569860 Msa0127960:intron 40.0%
TGAAATCAGGATCCATTGGA+GGG - chr1_3:57570345-57570364 None:intergenic 40.0%
GGATGGCGTAAAATTGTTGA+TGG + chr1_3:57570511-57570530 Msa0127960:CDS 40.0%
!! GCTTCTGCTTTAAAAGCATG+TGG + chr1_3:57570717-57570736 Msa0127960:CDS 40.0%
! TGTGGTGCTAAATCTGTAAG+TGG + chr1_3:57570735-57570754 Msa0127960:intron 40.0%
CATGGAGTCACAATTTAGTG+AGG - chr1_3:57570954-57570973 None:intergenic 40.0%
ATGGATCTAACTGTCCACAA+TGG + chr1_3:57571075-57571094 Msa0127960:CDS 40.0%
!! TCCACAATGGATTATCGCAA+TGG + chr1_3:57571088-57571107 Msa0127960:CDS 40.0%
TCCATTGCGATAATCCATTG+TGG - chr1_3:57571092-57571111 None:intergenic 40.0%
!! ACAATGGATTATCGCAATGG+AGG + chr1_3:57571091-57571110 Msa0127960:CDS 40.0%
TTACCAAGTGTGTCATAGAG+AGG - chr1_3:57571255-57571274 None:intergenic 40.0%
ATGCTCCAGCTAACAATTGA+AGG + chr1_3:57571649-57571668 Msa0127960:intron 40.0%
TAATGAAGTGAAGCCCACTA+TGG - chr1_3:57571726-57571745 None:intergenic 40.0%
AACTGAGGAAGAGAAAGATG+AGG + chr1_3:57571745-57571764 Msa0127960:CDS 40.0%
TGGTTTAATTCCAGCGTTTG+TGG - chr1_3:57571771-57571790 None:intergenic 40.0%
ATAATCCAACCTGAAAGGAG+TGG + chr1_3:57571922-57571941 Msa0127960:intron 40.0%
AACCTGAAAGGAGTGGTATA+GGG + chr1_3:57571929-57571948 Msa0127960:intron 40.0%
!! ATGTTTAAGGGTATCGCAAC+TGG + chr1_3:57572054-57572073 Msa0127960:intron 40.0%
!! TGTTTAAGGGTATCGCAACT+GGG + chr1_3:57572055-57572074 Msa0127960:intron 40.0%
GGGAATCTTGATCCACAATA+AGG + chr1_3:57572075-57572094 Msa0127960:intron 40.0%
CCTCACTCCAAATAGACTAA+TGG - chr1_3:57572268-57572287 None:intergenic 40.0%
! CCATTAGTCTATTTGGAGTG+AGG + chr1_3:57572265-57572284 Msa0127960:intron 40.0%
TCGCACATACTCTTTAATCC+CGG + chr1_3:57572306-57572325 Msa0127960:intron 40.0%
AAGGAGGACAAATACTTGAC+GGG - chr1_3:57572458-57572477 None:intergenic 40.0%
GTCAAGTATTTGTCCTCCTT+TGG + chr1_3:57572458-57572477 Msa0127960:CDS 40.0%
CATGGAACAATTTGAGGACA+AGG + chr1_3:57572590-57572609 Msa0127960:CDS 40.0%
TTGCTTTGTGTAGATGACTG+TGG + chr1_3:57572706-57572725 Msa0127960:intron 40.0%
GATCAAGGATGTGAGCTAAA+GGG - chr1_3:57572754-57572773 None:intergenic 40.0%
AGATGACGATCGTTGTAACA+GGG - chr1_3:57573054-57573073 None:intergenic 40.0%
AAGATGACGATCGTTGTAAC+AGG - chr1_3:57573055-57573074 None:intergenic 40.0%
AGATGACGATCGTTGTAACA+GGG - chr1_3:57573054-57573073 None:intergenic 40.0%
AAGATGACGATCGTTGTAAC+AGG - chr1_3:57573055-57573074 None:intergenic 40.0%
TATCTCTAACGCACTAGGTA+AGG - chr1_3:57574070-57574089 None:intergenic 40.0%
ACTGATATCTCTAACGCACT+AGG - chr1_3:57574075-57574094 None:intergenic 40.0%
! AGAGGCACAAATTGAGCTAA+CGG + chr1_3:57574662-57574681 Msa0127960:intron 40.0%
AAATTGAGCTAACGGAGTGT+TGG + chr1_3:57574670-57574689 Msa0127960:intron 40.0%
TATGTCACACAAGTGCTATC+CGG - chr1_3:57575003-57575022 None:intergenic 40.0%
CACTTGTGTGACATAGAGTT+GGG + chr1_3:57575008-57575027 Msa0127960:intron 40.0%
! TTGGGTGACATTGATGACAT+TGG + chr1_3:57575026-57575045 Msa0127960:intron 40.0%
ATTTGGCCAAAACATGCGTT+AGG + chr1_3:57575175-57575194 Msa0127960:intron 40.0%
CATGCTCTACAACTAGTAAG+TGG + chr1_3:57575672-57575691 Msa0127960:intron 40.0%
AAACTTGGCTGGATGAACAA+AGG + chr1_3:57576033-57576052 Msa0127960:CDS 40.0%
!! AGATCTACTAGCCTTCAGAA+AGG + chr1_3:57576086-57576105 Msa0127960:CDS 40.0%
CTAATGGTGTGTAAAGGAGA+AGG - chr1_3:57576183-57576202 None:intergenic 40.0%
CTTCTCCTTTACACACCATT+AGG + chr1_3:57576181-57576200 Msa0127960:intron 40.0%
ACTCGATGGACCAACTAAAA+AGG - chr1_3:57576381-57576400 None:intergenic 40.0%
TGTATTCAATGAATTGCGGC+TGG + chr1_3:57576676-57576695 Msa0127960:CDS 40.0%
!!! AGAGGCAAAAGTGTTTTCAC+TGG + chr1_3:57576761-57576780 Msa0127960:CDS 40.0%
GTGGAACCATCCATCTATTA+TGG - chr1_3:57576819-57576838 None:intergenic 40.0%
GAAGAGAAAATCAACCTGTG+TGG - chr1_3:57576838-57576857 None:intergenic 40.0%
GTATATATCCTAGGGGACAT+TGG + chr1_3:57576929-57576948 Msa0127960:intron 40.0%
CAAGTTCAGTGAACACTTTC+TGG + chr1_3:57577099-57577118 Msa0127960:intron 40.0%
AAGCGAACATAGTTTGGAGA+AGG - chr1_3:57577296-57577315 None:intergenic 40.0%
TTGGTCAAGCGAACATAGTT+TGG - chr1_3:57577302-57577321 None:intergenic 40.0%
ATCTACAGCTGTGAGAAACA+AGG + chr1_3:57577351-57577370 Msa0127960:intron 40.0%
AGGTTTCTACCTTCTAGACT+CGG + chr1_3:57578285-57578304 Msa0127960:exon 40.0%
TAGACATATCCGAGTCTAGA+AGG - chr1_3:57578297-57578316 None:intergenic 40.0%
GCCAATATGCTATTACAGCA+CGG - chr1_3:57578513-57578532 None:intergenic 40.0%
GTCTCACACCTCACATACTA+AGG + chr1_3:57569824-57569843 Msa0127960:intron 45.0%
AAGGTTGAGGAAGGAAAGGA+AGG + chr1_3:57570259-57570278 Msa0127960:CDS 45.0%
GAGAGAAGGTTACGGTAAAC+AGG - chr1_3:57570310-57570329 None:intergenic 45.0%
GTGAAATCAGGATCCATTGG+AGG - chr1_3:57570346-57570365 None:intergenic 45.0%
GAGGTGAAATCAGGATCCAT+TGG - chr1_3:57570349-57570368 None:intergenic 45.0%
ATCCTGATTTCACCTCTGCT+TGG + chr1_3:57570353-57570372 Msa0127960:CDS 45.0%
TCCTGATTTCACCTCTGCTT+GGG + chr1_3:57570354-57570373 Msa0127960:CDS 45.0%
CCTGAAAATATCCCAAGCAG+AGG - chr1_3:57570368-57570387 None:intergenic 45.0%
! CCTCTGCTTGGGATATTTTC+AGG + chr1_3:57570365-57570384 Msa0127960:CDS 45.0%
TTTGTCAAAGAGACGAGACG+AGG + chr1_3:57570599-57570618 Msa0127960:intron 45.0%
GTTGAATGCATGCAGTCACA+CGG - chr1_3:57570821-57570840 None:intergenic 45.0%
! AGTGCTTTTGATGCAGGTTC+TGG + chr1_3:57571341-57571360 Msa0127960:intron 45.0%
GCTACACTTACAGCCATAGT+GGG + chr1_3:57571710-57571729 Msa0127960:intron 45.0%
GGGCTTCACTTCATTAACTG+AGG + chr1_3:57571730-57571749 Msa0127960:CDS 45.0%
! CTATACCACTCCTTTCAGGT+TGG - chr1_3:57571930-57571949 None:intergenic 45.0%
CAACCTGAAAGGAGTGGTAT+AGG + chr1_3:57571928-57571947 Msa0127960:intron 45.0%
ACCTGAAAGGAGTGGTATAG+GGG + chr1_3:57571930-57571949 Msa0127960:intron 45.0%
! CGGGTTTTCTTTTCCCTGTA+AGG - chr1_3:57572439-57572458 None:intergenic 45.0%
CATATGTCATGAGCCAAAGG+AGG - chr1_3:57572474-57572493 None:intergenic 45.0%
GTGCATATGTCATGAGCCAA+AGG - chr1_3:57572477-57572496 None:intergenic 45.0%
GGAACTAGTGGAGATCCTAA+AGG + chr1_3:57572513-57572532 Msa0127960:CDS 45.0%
CGATCAAGGATGTGAGCTAA+AGG - chr1_3:57572755-57572774 None:intergenic 45.0%
TAGAAAGATAGACGGCACGT+TGG + chr1_3:57572883-57572902 Msa0127960:intron 45.0%
TAGAAAGATAGACGGCACGT+TGG + chr1_3:57572883-57572902 Msa0127960:intron 45.0%
TAGAAAGATAGACGGCACGT+TGG + chr1_3:57572883-57572902 Msa0127960:intron 45.0%
ATATGGGTGTCAACATGTGG+AGG + chr1_3:57574958-57574977 Msa0127960:intron 45.0%
TATGGGTGTCAACATGTGGA+GGG + chr1_3:57574959-57574978 Msa0127960:intron 45.0%
ATGTCACACAAGTGCTATCC+GGG - chr1_3:57575002-57575021 None:intergenic 45.0%
GCACTTGTGTGACATAGAGT+TGG + chr1_3:57575007-57575026 Msa0127960:intron 45.0%
GGTACACCAGCAAACAATGT+TGG - chr1_3:57575426-57575445 None:intergenic 45.0%
! CATTGTTTGCTGGTGTACCA+CGG + chr1_3:57575427-57575446 Msa0127960:CDS 45.0%
! ATTGTTTGCTGGTGTACCAC+GGG + chr1_3:57575428-57575447 Msa0127960:CDS 45.0%
TGCAGGTATCAAGAAAGCAG+TGG + chr1_3:57575615-57575634 Msa0127960:intron 45.0%
TGGCACAACTAAATCCAGTG+AGG + chr1_3:57575635-57575654 Msa0127960:CDS 45.0%
CCAAAAACTGTTCTCCTCAC+TGG - chr1_3:57575652-57575671 None:intergenic 45.0%
! CCAGTGAGGAGAACAGTTTT+TGG + chr1_3:57575649-57575668 Msa0127960:CDS 45.0%
CACACACACAACCTTTCTGA+AGG - chr1_3:57576100-57576119 None:intergenic 45.0%
CACACCATTAGGTCAAAGCA+AGG + chr1_3:57576192-57576211 Msa0127960:intron 45.0%
!! CTAGCCTTGCTTTGACCTAA+TGG - chr1_3:57576199-57576218 None:intergenic 45.0%
CATTAGGTCAAAGCAAGGCT+AGG + chr1_3:57576197-57576216 Msa0127960:intron 45.0%
ACTTGTGCCTTTGTATGCCA+AGG + chr1_3:57576293-57576312 Msa0127960:CDS 45.0%
! ACCATAGCCTTGGCATACAA+AGG - chr1_3:57576303-57576322 None:intergenic 45.0%
TGTATGCCAAGGCTATGGTA+AGG + chr1_3:57576304-57576323 Msa0127960:intron 45.0%
! CCACATGTTTCTGTCAAACC+TGG - chr1_3:57576596-57576615 None:intergenic 45.0%
CCAGGTTTGACAGAAACATG+TGG + chr1_3:57576593-57576612 Msa0127960:intron 45.0%
CCTAGCATGCACATTTCATC+TGG - chr1_3:57576638-57576657 None:intergenic 45.0%
CCAGATGAAATGTGCATGCT+AGG + chr1_3:57576635-57576654 Msa0127960:CDS 45.0%
ATGTGCATGCTAGGCAATGT+TGG + chr1_3:57576644-57576663 Msa0127960:CDS 45.0%
ATTCAATGAATTGCGGCTGG+AGG + chr1_3:57576679-57576698 Msa0127960:CDS 45.0%
AGAGGATTGTAACCCATGTC+TGG - chr1_3:57576710-57576729 None:intergenic 45.0%
! GACATGGGTTACAATCCTCT+TGG + chr1_3:57576710-57576729 Msa0127960:CDS 45.0%
ACACATATCTCACCACATGG+AGG - chr1_3:57576740-57576759 None:intergenic 45.0%
CTGACACATATCTCACCACA+TGG - chr1_3:57576743-57576762 None:intergenic 45.0%
TGTGGTGAGATATGTGTCAG+AGG + chr1_3:57576743-57576762 Msa0127960:CDS 45.0%
ATAGATGGATGGTTCCACAC+AGG + chr1_3:57576821-57576840 Msa0127960:CDS 45.0%
AGACCCGCTTCCATTTGATA+TGG + chr1_3:57577947-57577966 Msa0127960:CDS 45.0%
GCCGTGCTGTAATAGCATAT+TGG + chr1_3:57578509-57578528 Msa0127960:three_prime_UTR 45.0%
!!! ATATTTAAAATAAAATGAAA+AGG - chr1_3:57569936-57569955 None:intergenic 5.0%
!!! CAATTTATTTTTATTTTTTT+GGG + chr1_3:57572919-57572938 Msa0127960:intron 5.0%
!!! CAATTTATTTTTATTTTTTT+GGG + chr1_3:57572919-57572938 Msa0127960:intron 5.0%
!!! CAATTTATTTTTATTTTTTT+GGG + chr1_3:57572919-57572938 Msa0127960:intron 5.0%
!! TTTAAATTAAAAAAAAAGTT+TGG + chr1_3:57574349-57574368 Msa0127960:intron 5.0%
!! AAAACAATAAAAAAAAAATT+TGG - chr1_3:57575543-57575562 None:intergenic 5.0%
!!! TTTTAATAATTGATTTTATT+TGG + chr1_3:57575560-57575579 Msa0127960:intron 5.0%
!! AATAAATTTAATAATTGTAT+TGG - chr1_3:57575830-57575849 None:intergenic 5.0%
!! ATAGAAATATATTAAAATTA+TGG + chr1_3:57575932-57575951 Msa0127960:intron 5.0%
TCCCAAGCAGAGGTGAAATC+AGG - chr1_3:57570358-57570377 None:intergenic 50.0%
ACATCCTCAAAACCGCATGC+TGG + chr1_3:57570489-57570508 Msa0127960:CDS 50.0%
CATCCTCAAAACCGCATGCT+GGG + chr1_3:57570490-57570509 Msa0127960:CDS 50.0%
! TTTTACGCCATCCCAGCATG+CGG - chr1_3:57570504-57570523 None:intergenic 50.0%
GTGCCTCTCTATGACACACT+TGG + chr1_3:57571249-57571268 Msa0127960:CDS 50.0%
GGCTACACTTACAGCCATAG+TGG + chr1_3:57571709-57571728 Msa0127960:intron 50.0%
AAAGATGAGGCCACAAACGC+TGG + chr1_3:57571758-57571777 Msa0127960:CDS 50.0%
TCCCCTATACCACTCCTTTC+AGG - chr1_3:57571934-57571953 None:intergenic 50.0%
GATGTGAGCTAAAGGGAGGA+AGG - chr1_3:57572747-57572766 None:intergenic 50.0%
CAAGGATGTGAGCTAAAGGG+AGG - chr1_3:57572751-57572770 None:intergenic 50.0%
! GCATCCGTGGGTTACTATCA+CGG + chr1_3:57572806-57572825 Msa0127960:CDS 50.0%
! CATCCGTGGGTTACTATCAC+GGG + chr1_3:57572807-57572826 Msa0127960:CDS 50.0%
! ATCCGTGGGTTACTATCACG+GGG + chr1_3:57572808-57572827 Msa0127960:CDS 50.0%
TACCCCGTGATAGTAACCCA+CGG - chr1_3:57572813-57572832 None:intergenic 50.0%
GTATCCTTAACCCATGCTCG+AGG - chr1_3:57573967-57573986 None:intergenic 50.0%
! GTTGTGACTTGTGAAGCTCC+CGG + chr1_3:57574981-57575000 Msa0127960:intron 50.0%
! TGTGCGCCTAACGCATGTTT+TGG - chr1_3:57575184-57575203 None:intergenic 50.0%
GAAGGATCTGAATGCGTTGC+TGG + chr1_3:57575380-57575399 Msa0127960:intron 50.0%
TAGGTCAAAGCAAGGCTAGG+CGG + chr1_3:57576200-57576219 Msa0127960:intron 50.0%
GCCTTTGTATGCCAAGGCTA+TGG + chr1_3:57576299-57576318 Msa0127960:CDS 50.0%
CAAGGTCCTTACCATAGCCT+TGG - chr1_3:57576313-57576332 None:intergenic 50.0%
CAAGGCTATGGTAAGGACCT+TGG + chr1_3:57576311-57576330 Msa0127960:intron 50.0%
CTGGAGGAAGTTCCAGACAT+GGG + chr1_3:57576695-57576714 Msa0127960:CDS 50.0%
GCATTTCTCCAATGTCCCCT+AGG - chr1_3:57576940-57576959 None:intergenic 50.0%
! CATCCCAGCATGCGGTTTTG+AGG - chr1_3:57570496-57570515 None:intergenic 55.0%
CTCAAAACCGCATGCTGGGA+TGG + chr1_3:57570494-57570513 Msa0127960:CDS 55.0%
TTTCCGTAACGGTGCATCCG+TGG + chr1_3:57572793-57572812 Msa0127960:CDS 55.0%
TTCCGTAACGGTGCATCCGT+GGG + chr1_3:57572794-57572813 Msa0127960:CDS 55.0%
AACCCACGGATGCACCGTTA+CGG - chr1_3:57572799-57572818 None:intergenic 55.0%
TTAACCCATGCTCGAGGCAC+CGG - chr1_3:57573961-57573980 None:intergenic 55.0%
ACATGCGTTAGGCGCACATG+TGG + chr1_3:57575186-57575205 Msa0127960:intron 55.0%
GGATCTGAATGCGTTGCTGG+AGG + chr1_3:57575383-57575402 Msa0127960:intron 55.0%
GCTGGAGGAAGTTCCAGACA+TGG + chr1_3:57576694-57576713 Msa0127960:CDS 55.0%
CCACATGGAGGAGTTCCAAG+AGG - chr1_3:57576728-57576747 None:intergenic 55.0%
CCTCTTGGAACTCCTCCATG+TGG + chr1_3:57576725-57576744 Msa0127960:CDS 55.0%
CAGCACGGCACCATACTAGT+AGG - chr1_3:57578498-57578517 None:intergenic 55.0%
CTAACCGGTGCCTCGAGCAT+GGG + chr1_3:57573954-57573973 Msa0127960:intron 60.0%
! GGTGCCTCGAGCATGGGTTA+AGG + chr1_3:57573960-57573979 Msa0127960:intron 60.0%
GTTAGGCGCACATGTGGTGC+CGG + chr1_3:57575192-57575211 Msa0127960:intron 60.0%
GCTAACCGGTGCCTCGAGCA+TGG + chr1_3:57573953-57573972 Msa0127960:intron 65.0%
!! GCACATGTGGTGCCGGTCCA+GGG + chr1_3:57575199-57575218 Msa0127960:intron 65.0%
!! CGCACATGTGGTGCCGGTCC+AGG + chr1_3:57575198-57575217 Msa0127960:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57569640 57578587 57569640 ID=Msa0127960;Name=Msa0127960
chr1_3 mRNA 57569640 57578587 57569640 ID=Msa0127960-mRNA-1;Parent=Msa0127960;Name=Msa0127960-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|0.77|0.84|1|0.88|0.89|19|302|642
chr1_3 exon 57569640 57569686 57569640 ID=Msa0127960-mRNA-1:exon:18265;Parent=Msa0127960-mRNA-1
chr1_3 exon 57570222 57570410 57570222 ID=Msa0127960-mRNA-1:exon:18266;Parent=Msa0127960-mRNA-1
chr1_3 exon 57570474 57570537 57570474 ID=Msa0127960-mRNA-1:exon:18267;Parent=Msa0127960-mRNA-1
chr1_3 exon 57570660 57570749 57570660 ID=Msa0127960-mRNA-1:exon:18268;Parent=Msa0127960-mRNA-1
chr1_3 exon 57571056 57571112 57571056 ID=Msa0127960-mRNA-1:exon:18269;Parent=Msa0127960-mRNA-1
chr1_3 exon 57571222 57571270 57571222 ID=Msa0127960-mRNA-1:exon:18270;Parent=Msa0127960-mRNA-1
chr1_3 exon 57571357 57571433 57571357 ID=Msa0127960-mRNA-1:exon:18271;Parent=Msa0127960-mRNA-1
chr1_3 exon 57571577 57571616 57571577 ID=Msa0127960-mRNA-1:exon:18272;Parent=Msa0127960-mRNA-1
chr1_3 exon 57571723 57571817 57571723 ID=Msa0127960-mRNA-1:exon:18273;Parent=Msa0127960-mRNA-1
chr1_3 exon 57572444 57572611 57572444 ID=Msa0127960-mRNA-1:exon:18274;Parent=Msa0127960-mRNA-1
chr1_3 exon 57572719 57572829 57572719 ID=Msa0127960-mRNA-1:exon:18275;Parent=Msa0127960-mRNA-1
chr1_3 exon 57575384 57575504 57575384 ID=Msa0127960-mRNA-1:exon:18276;Parent=Msa0127960-mRNA-1
chr1_3 exon 57575620 57575686 57575620 ID=Msa0127960-mRNA-1:exon:18277;Parent=Msa0127960-mRNA-1
chr1_3 exon 57576032 57576107 57576032 ID=Msa0127960-mRNA-1:exon:18278;Parent=Msa0127960-mRNA-1
chr1_3 exon 57576203 57576320 57576203 ID=Msa0127960-mRNA-1:exon:18279;Parent=Msa0127960-mRNA-1
chr1_3 exon 57576597 57576842 57576597 ID=Msa0127960-mRNA-1:exon:18280;Parent=Msa0127960-mRNA-1
chr1_3 exon 57576942 57577081 57576942 ID=Msa0127960-mRNA-1:exon:18281;Parent=Msa0127960-mRNA-1
chr1_3 exon 57577912 57578031 57577912 ID=Msa0127960-mRNA-1:exon:18282;Parent=Msa0127960-mRNA-1
chr1_3 exon 57578232 57578587 57578232 ID=Msa0127960-mRNA-1:exon:18283;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57569640 57569686 57569640 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57570222 57570410 57570222 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57570474 57570537 57570474 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57570660 57570749 57570660 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57571056 57571112 57571056 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57571222 57571270 57571222 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57571357 57571433 57571357 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57571577 57571616 57571577 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57571723 57571817 57571723 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57572444 57572611 57572444 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57572719 57572829 57572719 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57575384 57575504 57575384 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57575620 57575686 57575620 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57576032 57576107 57576032 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57576203 57576320 57576203 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57576597 57576842 57576597 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57576942 57577081 57576942 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57577912 57578031 57577912 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 CDS 57578232 57578285 57578232 ID=Msa0127960-mRNA-1:cds;Parent=Msa0127960-mRNA-1
chr1_3 three_prime_UTR 57578286 57578587 57578286 ID=Msa0127960-mRNA-1:three_prime_utr;Parent=Msa0127960-mRNA-1
Gene Sequence

>Msa0127960

ATGACCAAGAATTACACTGTAGGATTCTCCGAATACAATGTTAAGAGATTTTTGTTGCAAAGAAGAATGAAGAGCTTTTCAATTAAGGTTGAGGAAGGAAAGGAAGGAAAAAATGGCATGCTTTCTGTTGGTCCTGTTTACCGTAACCTTCTCTCCAAAAATGAATTCCCTCCAATGGATCCTGATTTCACCTCTGCTTGGGATATTTTCAGGCAATTTATTTCACTGTTTATAAGTACGTCTGTCAAAAAACATCCTCAAAACCGCATGCTGGGATGGCGTAAAATTGTTGATGGAAAGATAGGACCATATGTTTGGAAGACATACAAGGAAGCTTATGATGAAGTTTTACAAATTGCTTCTGCTTTAAAAGCATGTGGTGCTAAATCTGGTTCAAAAATTGGAATTTATGGATCTAACTGTCCACAATGGATTATCGCAATGGAGGCTTGTTCTGCACAAAACTTCATTTGTGTGCCTCTCTATGACACACTTGGTTCTGGTGCTATAAATTTTATCATAGATCATGCAGAAATAGATTATGTTTTTGTTCAAGATAAGAAGGTTAAAGAGCTTTTGAATGCTGACTGTAAATCCTCTAAGAGATTGAAAGCCATAGTGGGCTTCACTTCATTAACTGAGGAAGAGAAAGATGAGGCCACAAACGCTGGAATTAAACCATATACATGGAATCAATTCGTACAAAAGGGAAAAGAAAACCCGTCAAGTATTTGTCCTCCTTTGGCTCATGACATATGCACAATAATGTATACAAGTGGAACTAGTGGAGATCCTAAAGGTGTTGTTTTAACACATGAAAACGTACTAGCTTTAGTAAGAGGAATGGATCTTTTCATGGAACAATTTGAGGACAAGATGACTGTGGATGATGTGTATTTATCCTTCCTCCCTTTAGCTCACATCCTTGATCGTTGTATTGAAGAATATTTTTTCCGTAACGGTGCATCCGTGGGTTACTATCACGGGGATCTGAATGCGTTGCTGGAGGATTTAAGTGAGTTAAAGCCAACATTGTTTGCTGGTGTACCACGGGTTTTTGAAAAAGTTTATGAAGGCAAGGTCACACTACAATATAATTTTTTTTTTTGTATCAAGAAAGCAGTGGCACAACTAAATCCAGTGAGGAGAACAGTTTTTGGCATGCTCTACAACTATAAACTTGGCTGGATGAACAAAGGATACAAACAGAGAGAAGCATCACGTCTTGCAGATCTACTAGCCTTCAGAAAGGTCAAAGCAAGGCTAGGCGGACGTGTTAGACTAATAATATCTGGAGGTGCAGCCTTAAGCTCTGAGATTGAAGAATTCTTGCGTGTCACTACTTGTGCCTTTGTATGCCAAGGCTATGGTTTGACAGAAACATGTGGACCAACTACTCTTACATTTCCAGATGAAATGTGCATGCTAGGCAATGTTGGTGTTGTAACTGTATTCAATGAATTGCGGCTGGAGGAAGTTCCAGACATGGGTTACAATCCTCTTGGAACTCCTCCATGTGGTGAGATATGTGTCAGAGGCAAAAGTGTTTTCACTGGTTACCATAAAAATCCTGAGTTAACAAAAGAAGCCATAATAGATGGATGGTTCCACACAGGGGACATTGGAGAAATGCTTCCTAATGGTATTATGAGGATTATTGACAGGAAGAAGAATCTTGTTAAGCTTTCTCAAGGAGAGTATATAGCCCTTGAGTATCTTGAAAATGTTTATACAATCACTCCAATAGTTGAAGATTTGAAGGGATTTGAACATATCAAAGGCGTAATATTAGACCCGCTTCCATTTGATATGGAAAGAGACTTGGTAACTGCAACATTGAAAAAGAAAAGGAACAACATGATCAAGTATTATAAGGTTGAGATAGACGAACTATACAAAAGTTTGACTGGAGATAAGCCTAAATTTTGA
Protein sequence

>Msa0127960

MTKNYTVGFSEYNVKRFLLQRRMKSFSIKVEEGKEGKNGMLSVGPVYRNLLSKNEFPPMDPDFTSAWDIFRQFISLFISTSVKKHPQNRMLGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEACSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFTSLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSICPPLAHDICTIMYTSGTSGDPKGVVLTHENVLALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHGDLNALLEDLSELKPTLFAGVPRVFEKVYEGKVTLQYNFFFCIKKAVAQLNPVRRTVFGMLYNYKLGWMNKGYKQREASRLADLLAFRKVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYGLTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVFTGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIMRIIDRKKNLVKLSQGEYIALEYLENVYTITPIVEDLKGFEHIKGVILDPLPFDMERDLVTATLKKKRNNMIKYYKVEIDELYKSLTGDKPKF*