AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156420 MtrunA17_Chr1g0194371 86.801 697 11 3 1 650 1 663 0.0 1212
Msa0156420 MtrunA17_Chr7g0270221 64.106 716 117 4 1 649 1 643 0.0 916
Msa0156420 MtrunA17_Chr5g0396691 47.399 692 282 3 4 649 6 661 0.0 636
Msa0156420 MtrunA17_Chr5g0396711 46.898 693 286 4 2 648 4 660 0.0 623
Msa0156420 MtrunA17_Chr8g0388081 46.741 629 255 2 60 642 1 595 0.0 583
Msa0156420 MtrunA17_Chr1g0162621 42.671 689 313 4 4 645 5 658 0.0 568
Msa0156420 MtrunA17_Chr4g0034181 41.884 690 315 5 4 645 5 656 0.0 554
Msa0156420 MtrunA17_Chr1g0205711 35.155 677 343 12 24 648 60 692 5.91e-117 365
Msa0156420 MtrunA17_Chr1g0160041 30.448 670 358 14 46 642 62 696 2.49e-88 290
Msa0156420 MtrunA17_Chr3g0124631 30.942 669 403 17 22 640 37 696 6.92e-85 280
Msa0156420 MtrunA17_Chr3g0120731 30.733 641 390 15 47 640 93 726 4.69e-76 258
Msa0156420 MtrunA17_Chr3g0121931 26.387 667 393 21 46 641 81 720 5.24e-39 153
Msa0156420 MtrunA17_Chr3g0121951 26.435 662 396 20 46 641 79 715 9.83e-39 152
Msa0156420 MtrunA17_Chr8g0377991 24.741 675 396 20 46 641 83 724 7.86e-36 144
Msa0156420 MtrunA17_Chr5g0395431 27.291 491 277 17 78 555 98 521 6.12e-29 122
Msa0156420 MtrunA17_Chr5g0396331 23.158 475 303 12 78 537 41 468 9.66e-24 105
Msa0156420 MtrunA17_Chr4g0000461 26.947 475 270 17 78 535 54 468 1.57e-23 105
Msa0156420 MtrunA17_Chr1g0180541 27.692 325 185 11 221 535 191 475 2.04e-22 101
Msa0156420 MtrunA17_Chr4g0072561 25.368 544 301 20 66 585 50 512 4.15e-22 100
Msa0156420 MtrunA17_Chr2g0327341 28.909 339 182 12 221 553 186 471 6.58e-22 100
Msa0156420 MtrunA17_Chr4g0028411 27.353 340 186 11 221 553 189 474 1.12e-21 99.4
Msa0156420 MtrunA17_Chr1g0180551 26.521 411 228 14 221 617 264 614 6.59e-21 97.4
Msa0156420 MtrunA17_Chr8g0370701 23.941 472 291 14 79 530 84 507 8.41e-21 97.1
Msa0156420 MtrunA17_Chr4g0039791 25.877 456 284 14 86 535 81 488 3.36e-20 94.7
Msa0156420 MtrunA17_Chr8g0370731 25.216 464 264 17 103 534 19 431 4.26e-20 94.4
Msa0156420 MtrunA17_Chr5g0396311 22.689 476 306 13 78 537 41 470 5.81e-20 94.0
Msa0156420 MtrunA17_Chr4g0068151 23.711 582 343 18 78 628 47 558 9.45e-20 93.6
Msa0156420 MtrunA17_Chr1g0157401 26.875 320 194 10 220 535 204 487 1.27e-19 92.8
Msa0156420 MtrunA17_Chr5g0406681 23.909 481 301 17 74 537 65 497 1.93e-19 92.4
Msa0156420 MtrunA17_Chr5g0409771 23.272 593 366 18 24 594 26 551 5.41e-19 90.9
Msa0156420 MtrunA17_Chr3g0109731 24.025 487 278 18 78 530 41 469 6.59e-19 90.9
Msa0156420 MtrunA17_Chr1g0197391 28.024 339 186 11 221 553 212 498 1.22e-17 86.7
Msa0156420 MtrunA17_Chr2g0301671 22.852 582 348 18 78 628 47 558 1.60e-17 86.3
Msa0156420 MtrunA17_Chr6g0471921 22.328 524 314 15 42 552 5 448 1.35e-16 83.2
Msa0156420 MtrunA17_Chr2g0334131 35.294 170 99 8 373 535 45 210 1.57e-15 77.8
Msa0156420 MtrunA17_Chr8g0353341 24.691 324 194 10 221 535 208 490 2.85e-15 79.3
Msa0156420 MtrunA17_Chr1g0186071 30.909 165 109 5 373 535 322 483 5.77e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156420 AT2G47240.1 58.874 693 205 2 1 647 1 659 0.0 843
Msa0156420 AT2G47240.2 58.874 693 205 2 1 647 1 659 0.0 843
Msa0156420 AT2G47240.3 58.874 693 205 2 1 647 1 659 0.0 843
Msa0156420 AT2G47240.4 58.517 634 183 2 60 647 1 600 0.0 769
Msa0156420 AT4G23850.1 44.783 690 301 2 2 645 5 660 0.0 627
Msa0156420 AT4G11030.1 46.221 688 288 4 2 642 5 657 0.0 622
Msa0156420 AT1G64400.1 45.985 685 289 3 4 641 6 656 0.0 615
Msa0156420 AT1G49430.1 41.997 681 313 4 8 640 11 657 0.0 546
Msa0156420 AT1G49430.2 39.163 526 239 3 8 486 11 502 1.34e-127 387
Msa0156420 AT5G27600.1 34.911 676 346 11 24 648 63 695 3.53e-122 379
Msa0156420 AT3G05970.1 36.515 660 330 9 36 648 78 695 6.67e-122 378
Msa0156420 AT1G77590.1 31.406 640 383 16 46 640 62 690 1.21e-87 288
Msa0156420 AT2G04350.2 28.423 672 365 13 47 640 86 719 3.19e-76 258
Msa0156420 AT2G04350.1 28.423 672 365 13 47 640 86 719 3.19e-76 258
Msa0156420 AT1G77590.2 32.130 554 334 14 118 640 2 544 8.63e-76 253
Msa0156420 AT2G47245.1 60.215 93 37 0 3 95 36 128 3.02e-32 121
Msa0156420 AT1G21530.2 25.532 470 291 14 78 532 42 467 1.04e-25 112
Msa0156420 AT1G66120.1 25.349 501 284 15 78 550 41 479 2.40e-25 111
Msa0156420 AT2G17650.1 26.027 511 278 17 78 553 88 533 3.25e-25 110
Msa0156420 AT1G65060.1 27.344 512 261 22 78 561 77 505 1.46e-24 108
Msa0156420 AT1G65060.2 27.669 459 236 19 78 509 77 466 1.78e-24 107
Msa0156420 AT1G21530.1 25.532 470 289 15 78 532 42 465 6.03e-24 106
Msa0156420 AT1G51680.3 26.860 551 318 22 66 599 57 539 9.59e-23 103
Msa0156420 AT5G16370.1 26.514 479 281 18 78 535 42 470 2.24e-22 102
Msa0156420 AT5G16340.1 24.736 473 297 13 78 535 42 470 2.78e-22 101
Msa0156420 AT1G20560.1 24.000 475 291 14 78 530 43 469 3.06e-22 101
Msa0156420 AT3G21230.3 25.967 543 306 18 66 586 65 533 5.91e-22 100
Msa0156420 AT1G65890.1 24.008 504 287 18 78 550 41 479 8.44e-22 100
Msa0156420 AT3G21230.1 26.208 538 301 18 66 581 65 528 1.32e-21 99.8
Msa0156420 AT3G16910.1 24.698 579 342 19 78 628 49 561 1.98e-21 99.0
Msa0156420 AT1G65880.1 23.142 471 301 13 78 530 41 468 2.12e-21 99.0
Msa0156420 AT1G51680.1 26.969 508 296 21 66 553 57 509 2.43e-21 99.0
Msa0156420 AT1G77240.1 24.896 482 287 18 78 535 41 471 3.45e-21 98.2
Msa0156420 AT4G19010.1 29.231 325 180 12 221 535 205 489 3.90e-21 98.2
Msa0156420 AT1G51680.2 26.994 489 285 20 66 537 57 490 5.14e-21 97.4
Msa0156420 AT3G21230.2 26.220 492 280 16 66 535 65 495 7.41e-21 97.1
Msa0156420 AT3G23790.1 28.333 300 185 10 358 641 437 722 1.30e-20 97.1
Msa0156420 AT3G23790.1 24.267 375 220 9 2 363 42 365 1.09e-17 87.8
Msa0156420 AT4G14070.1 28.727 275 166 8 377 640 471 726 1.13e-19 94.0
Msa0156420 AT4G14070.1 24.090 357 201 9 42 378 93 399 9.12e-18 88.2
Msa0156420 AT4G05160.1 28.698 338 184 12 221 553 191 476 1.42e-19 93.2
Msa0156420 AT1G20560.2 26.857 350 190 12 200 530 89 391 2.47e-18 89.0
Msa0156420 AT1G75960.1 25.306 490 290 19 65 532 32 467 1.00e-17 87.4
Msa0156420 AT5G63380.1 23.909 527 322 20 24 535 23 485 5.11e-17 85.1
Msa0156420 AT5G38120.1 26.441 295 167 12 221 508 200 451 7.83e-12 68.6
Msa0156420 AT3G48990.1 23.450 516 307 18 37 537 1 443 9.72e-12 68.2
Msa0156420 AT5G38120.3 26.441 295 167 12 221 508 200 451 9.83e-12 68.2
Msa0156420 AT1G62940.1 26.750 400 228 17 218 594 179 536 1.00e-11 68.6
Msa0156420 AT5G38120.4 26.441 295 167 12 221 508 200 451 1.17e-11 67.8
Msa0156420 AT5G38120.2 26.441 295 167 12 221 508 200 451 1.17e-11 67.8
Msa0156420 AT1G68270.1 32.402 179 92 8 376 535 275 443 7.06e-11 65.5

Find 161 sgRNAs with CRISPR-Local

Find 603 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCTAGTGCCCAGGCTAGC+TGG 0.188668 1_4:-22663949 Msa0156420:CDS
TTATTTAAGATTTGGGTATA+TGG 0.208667 1_4:-22660594 Msa0156420:intron
ACGAATTGATTCCATGTATA+TGG 0.245820 1_4:+22667985 None:intergenic
CTAAGGTTTCACTCACTCTT+TGG 0.259796 1_4:-22669910 Msa0156420:five_prime_UTR
AGGTAGAAACCTCAAAATTT+AGG 0.261202 1_4:+22659501 None:intergenic
GGCTAGTGCCCAGGCTAGCT+GGG 0.271694 1_4:-22663948 Msa0156420:CDS
GAGAAAATGAATTGCTCTTT+AGG 0.284055 1_4:-22659228 Msa0156420:three_prime_UTR
CATACTATTGGTGTTATGTT+TGG 0.284855 1_4:-22659305 Msa0156420:three_prime_UTR
ATACTTACATCTTCAACTAT+TGG 0.314643 1_4:+22660708 None:intergenic
TTGGTCAAGCGAACATAGTT+TGG 0.320137 1_4:+22660476 None:intergenic
ATTACCTTTCAATCTCTTAG+AGG 0.321844 1_4:+22668173 None:intergenic
AGACCCGCTTCCATTTGATA+TGG 0.328595 1_4:-22659828 Msa0156420:CDS
GTGGAACCATCCATCTATTA+TGG 0.334919 1_4:+22660959 None:intergenic
TTCTTCAATCTCAGAGCTTA+AGG 0.341131 1_4:+22661558 None:intergenic
TGTGTTAAAACAACACCTTT+AGG 0.342951 1_4:+22667020 None:intergenic
TATTTAAGATTTGGGTATAT+GGG 0.344059 1_4:-22660593 Msa0156420:intron
AGCTAGCCTGGGCACTAGCC+CGG 0.350992 1_4:+22663951 None:intergenic
CAACATGATCAAGTATTATA+AGG 0.357038 1_4:-22659765 Msa0156420:intron
TTAAGTACGAAAAGGGCTAT+TGG 0.365281 1_4:-22664008 Msa0156420:intron
TAAGTACGAAAAGGGCTATT+GGG 0.366204 1_4:-22664007 Msa0156420:intron
GTCAAGTATTTGTCCTCCTT+TGG 0.368480 1_4:-22667090 Msa0156420:CDS
TAAGTACAACAAGCAACTTT+AGG 0.370162 1_4:+22659421 None:intergenic
TCCTGATTTCACCTCTGCTT+GGG 0.376030 1_4:-22669413 Msa0156420:CDS
CTGAGCCCGGGCTAGTGCCC+AGG 0.377585 1_4:-22663957 Msa0156420:CDS
TTATTAGCAACATCTTCATT+TGG 0.377802 1_4:+22660534 None:intergenic
ATGAAGATGTTGCTAATAAG+TGG 0.378171 1_4:-22660530 Msa0156420:CDS
TTGTATGTCTTCCAAACATA+TGG 0.379295 1_4:+22669101 None:intergenic
CATAGATAGGACCATATGTT+TGG 0.379474 1_4:-22669112 Msa0156420:intron
ATGTTTGGATCCTACTAGTA+TGG 0.392819 1_4:-22659290 Msa0156420:three_prime_UTR
CCTAGCATGCACATTTCATC+TGG 0.398573 1_4:+22661140 None:intergenic
GAAGGATCTGAATGCGTTGC+TGG 0.399764 1_4:-22663226 Msa0156420:intron
GAGAGAAGGTTACGGTAAAC+AGG 0.400121 1_4:+22669460 None:intergenic
ACAAAAGAAGCCATAATAGA+TGG 0.412059 1_4:-22660969 Msa0156420:CDS
TAAGTCCCTCACCGGTGTAC+AGG 0.415934 1_4:+22663912 None:intergenic
ATCCTGATTTCACCTCTGCT+TGG 0.423007 1_4:-22669414 Msa0156420:CDS
GCTAGCCTGGGCACTAGCCC+GGG 0.429424 1_4:+22663952 None:intergenic
ATAATCCTCATAATACCATT+AGG 0.434153 1_4:+22660813 None:intergenic
CATCCGTTGGTTACTATCAC+GGG 0.436619 1_4:-22666741 Msa0156420:CDS
TGCTTCCTAATGGTATTATG+AGG 0.438775 1_4:-22660818 Msa0156420:CDS
AAAAGAGGAGCAGCTGAGCC+CGG 0.443332 1_4:-22663970 Msa0156420:CDS
TGGTTTAATTCCAGCGTTTG+TGG 0.443623 1_4:+22668005 None:intergenic
TCCCAAGCAGAGGTGAAATC+AGG 0.444690 1_4:+22669412 None:intergenic
ATAGCACATATCTCTTCAAT+TGG 0.447684 1_4:+22660457 None:intergenic
TAGACATATCCGAGTCTAGA+AGG 0.448129 1_4:+22659481 None:intergenic
CGTGTTAGACTAATAATATC+TGG 0.450794 1_4:-22661589 Msa0156420:CDS
TTCCGTAACGGTGCATCCGT+TGG 0.452387 1_4:-22666754 Msa0156420:CDS
AAGGGCTATTGGGCTGGACT+TGG 0.458610 1_4:-22663997 Msa0156420:CDS
ATGGAATCAATTCGTACAAA+AGG 0.460579 1_4:-22667977 Msa0156420:intron
CGATCAAGGATGTGAGCTAA+AGG 0.462061 1_4:+22666796 None:intergenic
TCAAGATAAGAAGGTTAAAG+AGG 0.465855 1_4:-22668356 Msa0156420:intron
TTAAAGCCAACATTGTTTGC+TGG 0.471080 1_4:-22663189 Msa0156420:CDS
TCTGGAAATGTAAGAGTAGT+TGG 0.472023 1_4:+22661158 None:intergenic
AAGTCTCTTTCCATATCAAA+TGG 0.472138 1_4:+22659818 None:intergenic
AGAGGATTGTAACCCATGTC+TGG 0.475731 1_4:+22661068 None:intergenic
CATGGAACAATTTGAGGACA+AGG 0.478090 1_4:-22666958 Msa0156420:intron
GAATAGCTTCAAGTCAATAC+TGG 0.479819 1_4:-22660571 Msa0156420:CDS
AAAGATGAGGCCACAAACGC+TGG 0.481975 1_4:-22668015 Msa0156420:CDS
ATTGGAGAAATGCTTCCTAA+TGG 0.484911 1_4:-22660828 Msa0156420:CDS
CCAGATGAAATGTGCATGCT+AGG 0.486775 1_4:-22661140 Msa0156420:CDS
ACATCCTCAAAACCGCATGC+TGG 0.486879 1_4:-22669278 Msa0156420:CDS
CATCCTCAAAACCGCATGCT+GGG 0.489805 1_4:-22669277 Msa0156420:CDS
GGATGGCGTAAAATTGTTGA+TGG 0.493101 1_4:-22669256 Msa0156420:CDS
AACCAACGGATGCACCGTTA+CGG 0.493528 1_4:+22666752 None:intergenic
TACGAAAAGGGCTATTGGGC+TGG 0.494127 1_4:-22664003 Msa0156420:CDS
CTCAAAACCGCATGCTGGGA+TGG 0.496069 1_4:-22669273 Msa0156420:CDS
AATCTTGTTAAGCTTTCTCA+AGG 0.500570 1_4:-22660777 Msa0156420:CDS
GCTAGTGCCCAGGCTAGCTG+GGG 0.501528 1_4:-22663947 Msa0156420:CDS
TAATGAAGTGAAGCCCACTA+TGG 0.502558 1_4:+22668050 None:intergenic
ATTCTTCAATACAACGATCA+AGG 0.508652 1_4:+22666782 None:intergenic
AACGTACTAGCTTTAGTAAG+AGG 0.510169 1_4:-22666993 Msa0156420:CDS
GCGTAAAATTGTTGATGGAA+AGG 0.513370 1_4:-22669251 Msa0156420:intron
AAGTCCCTCACCGGTGTACA+GGG 0.514466 1_4:+22663913 None:intergenic
GAACTATACAAAAGTTTGAC+TGG 0.515018 1_4:-22659531 Msa0156420:CDS
CAAGGTCCTTACCATAGCCT+TGG 0.521183 1_4:+22661503 None:intergenic
GACATGGGTTACAATCCTCT+TGG 0.525689 1_4:-22661065 Msa0156420:CDS
GTATTATGAGGATTATTGAC+AGG 0.526644 1_4:-22660806 Msa0156420:CDS
CCTCTATGAAATTAGTTGAA+GGG 0.527464 1_4:-22659878 Msa0156420:intron
AAGGTTGAGAAAGGAAAGGA+AGG 0.529895 1_4:-22669508 Msa0156420:CDS
CTGGAATTAAACCATATACA+TGG 0.532708 1_4:-22667996 Msa0156420:CDS
CATTGTTTGCTGGTGTACCA+CGG 0.533381 1_4:-22663179 Msa0156420:CDS
CTAGTGCCCAGGCTAGCTGG+GGG 0.533786 1_4:-22663946 Msa0156420:CDS
AATAAGTGGGCATATGCAAA+TGG 0.534338 1_4:-22660516 Msa0156420:CDS
GTATATATCCTAGGGGACAT+TGG 0.534838 1_4:-22660846 Msa0156420:intron
AAAGAGGAGCAGCTGAGCCC+GGG 0.535815 1_4:-22663969 Msa0156420:CDS
AAGGAGGACAAATACTTGAC+GGG 0.536225 1_4:+22667093 None:intergenic
TGTATTCAATGAATTGCGGC+TGG 0.537145 1_4:-22661099 Msa0156420:CDS
GATCAAGGATGTGAGCTAAA+GGG 0.537448 1_4:+22666797 None:intergenic
GAGGTGAAATCAGGATCCAT+TGG 0.538563 1_4:+22669421 None:intergenic
CAGCACGGCACCATACTAGT+AGG 0.539736 1_4:+22659280 None:intergenic
GTCTCACACCTCACATACTA+AGG 0.543830 1_4:-22669927 Msa0156420:five_prime_UTR
ATTTGATATGGAAAGAGACT+TGG 0.545381 1_4:-22659816 Msa0156420:CDS
GCCTTTGTATGCCAAGGCTA+TGG 0.547652 1_4:-22661514 Msa0156420:intron
GGCTACACTTACAGCCATAG+TGG 0.547898 1_4:-22668064 Msa0156420:intron
ATTGTTTGCTGGTGTACCAC+GGG 0.549536 1_4:-22663178 Msa0156420:CDS
AAGGGATTTGAACATATCAA+AGG 0.551479 1_4:-22659860 Msa0156420:CDS
GCATCCGTTGGTTACTATCA+CGG 0.552275 1_4:-22666742 Msa0156420:CDS
AAAGGAGGACAAATACTTGA+CGG 0.560929 1_4:+22667092 None:intergenic
TGCACAATAATGTATACAAG+TGG 0.561176 1_4:-22667056 Msa0156420:CDS
AGGTTTCTACCTTCTAGACT+CGG 0.565052 1_4:-22659490 Msa0156420:three_prime_UTR
ATGTGCTACAAGCATACTAT+TGG 0.567263 1_4:-22659317 Msa0156420:three_prime_UTR
GTGTCACCGCCCCTGTACAC+CGG 0.571454 1_4:-22663923 Msa0156420:intron
TTTCCATATCAAATGGAAGC+GGG 0.571957 1_4:+22659825 None:intergenic
ATGTATACAAGTGGAACTAG+TGG 0.575171 1_4:-22667047 Msa0156420:CDS
TCCGCAATGGATTATCGCAA+TGG 0.577762 1_4:-22668680 Msa0156420:CDS
AATTAAGGTTGAGAAAGGAA+AGG 0.578413 1_4:-22669512 Msa0156420:CDS
ACTTGTGCCTTTGTATGCCA+AGG 0.583881 1_4:-22661520 Msa0156420:CDS
TAGTGCCCAGGCTAGCTGGG+GGG 0.588163 1_4:-22663945 Msa0156420:CDS
CATTAGGTCAAAGCAAGGCT+AGG 0.588553 1_4:-22661616 Msa0156420:intron
GTGAAATCAGGATCCATTGG+AGG 0.590379 1_4:+22669424 None:intergenic
AAATCCTCTAAGAGATTGAA+AGG 0.590421 1_4:-22668177 Msa0156420:intron
ACTAGCTTTAGTAAGAGGAA+TGG 0.591608 1_4:-22666988 Msa0156420:CDS
GCCGTGCTGTAATAGCATAT+TGG 0.592200 1_4:-22659266 Msa0156420:three_prime_UTR
CCCTCACCGGTGTACAGGGG+CGG 0.593198 1_4:+22663917 None:intergenic
AAGCGAACATAGTTTGGAGA+AGG 0.595063 1_4:+22660482 None:intergenic
TGAAGATGTTGCTAATAAGT+GGG 0.599300 1_4:-22660529 Msa0156420:CDS
ATGGATCTAACTGTCCGCAA+TGG 0.599344 1_4:-22668693 Msa0156420:CDS
ACCATAGCCTTGGCATACAA+AGG 0.601421 1_4:+22661513 None:intergenic
AAGAAGCCATAATAGATGGA+TGG 0.604745 1_4:-22660965 Msa0156420:CDS
GATGTGAGCTAAAGGGAGGA+AGG 0.614011 1_4:+22666804 None:intergenic
GTGCATATGTCATGAGCCAA+AGG 0.615739 1_4:+22667074 None:intergenic
ATGTGCATGCTAGGCAATGT+TGG 0.618977 1_4:-22661131 Msa0156420:CDS
TTGCTTTGTGTAGATGACTG+TGG 0.621448 1_4:-22666842 Msa0156420:intron
GCTTCTGCTTTAAAAGCATG+TGG 0.622653 1_4:-22669050 Msa0156420:CDS
TTACCAAGTGTGTCATAGAG+AGG 0.623853 1_4:+22668516 None:intergenic
CTTTCCATATCAAATGGAAG+CGG 0.623939 1_4:+22659824 None:intergenic
GGTACACCAGCAAACAATGT+TGG 0.629012 1_4:+22663183 None:intergenic
ATCTACAGCTGTGAGAAACA+AGG 0.630405 1_4:-22660424 Msa0156420:intron
GTCCCTCTCTATGACACACT+TGG 0.632501 1_4:-22668519 Msa0156420:intron
GGAACTAGTGGAGATCCTAA+AGG 0.633228 1_4:-22667035 Msa0156420:CDS
GCCAATATGCTATTACAGCA+CGG 0.635300 1_4:+22659265 None:intergenic
TAACTGTATTCAATGAATTG+CGG 0.635370 1_4:-22661103 Msa0156420:CDS
TACCAAGTGTGTCATAGAGA+GGG 0.641665 1_4:+22668517 None:intergenic
GGGCTTCACTTCATTAACTG+AGG 0.642336 1_4:-22668043 Msa0156420:CDS
CTGACACATATCTCACCACA+TGG 0.645144 1_4:+22661035 None:intergenic
AACTGAGGAAGAGAAAGATG+AGG 0.647032 1_4:-22668028 Msa0156420:CDS
GCTGGAGGAAGTTCCAGACA+TGG 0.647892 1_4:-22661081 Msa0156420:CDS
TGAAATCAGGATCCATTGGA+GGG 0.649258 1_4:+22669425 None:intergenic
GCAATGGATTATCGCAATGG+AGG 0.650146 1_4:-22668677 Msa0156420:intron
ATATGTTTGGAAGACATACA+AGG 0.657772 1_4:-22669099 Msa0156420:CDS
GCTACACTTACAGCCATAGT+GGG 0.658633 1_4:-22668063 Msa0156420:intron
CTGGAGGAAGTTCCAGACAT+GGG 0.659695 1_4:-22661080 Msa0156420:CDS
ATTCAATGAATTGCGGCTGG+AGG 0.661838 1_4:-22661096 Msa0156420:CDS
CATATGTCATGAGCCAAAGG+AGG 0.664582 1_4:+22667077 None:intergenic
AGTCCCTCACCGGTGTACAG+GGG 0.665294 1_4:+22663914 None:intergenic
CCTGAAAATATCCCAAGCAG+AGG 0.666120 1_4:+22669402 None:intergenic
CACACCATTAGGTCAAAGCA+AGG 0.667533 1_4:-22661621 Msa0156420:intron
CCAGGTTTGACAGAAACATG+TGG 0.679060 1_4:-22661182 Msa0156420:intron
GGATCTGAATGCGTTGCTGG+AGG 0.681374 1_4:-22663223 Msa0156420:CDS
CAAGGATGTGAGCTAAAGGG+AGG 0.681394 1_4:+22666800 None:intergenic
GAAGAGAAAATCAACCTGTG+TGG 0.682894 1_4:+22660940 None:intergenic
TAGGTCAAAGCAAGGCTAGG+CGG 0.689698 1_4:-22661613 Msa0156420:CDS
CCTCTTGGAACTCCTCCATG+TGG 0.694715 1_4:-22661050 Msa0156420:CDS
GAGTGAAACCTTAGTATGTG+AGG 0.697107 1_4:+22669919 None:intergenic
TACCCCGTGATAGTAACCAA+CGG 0.697826 1_4:+22666738 None:intergenic
ATCCGTTGGTTACTATCACG+GGG 0.701112 1_4:-22666740 Msa0156420:intron
TCCATTGCGATAATCCATTG+CGG 0.701887 1_4:+22668679 None:intergenic
ATAGATGGATGGTTCCACAC+AGG 0.705801 1_4:-22660954 Msa0156420:intron
GTTAGACTAATAATATCTGG+AGG 0.707528 1_4:-22661586 Msa0156420:CDS
TGTGGTGAGATATGTGTCAG+AGG 0.711445 1_4:-22661032 Msa0156420:CDS
CCACATGGAGGAGTTCCAAG+AGG 0.716589 1_4:+22661050 None:intergenic
ACACATATCTCACCACATGG+AGG 0.748292 1_4:+22661038 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATATATATATAT+AGG + chr1_4:22667140-22667159 None:intergenic 0.0%
!! TTATTTATAGTATAAAAAAG+AGG + chr1_4:22659218-22659237 None:intergenic 10.0%
!!! ATTGTTTTTTGTTTTATATT+TGG - chr1_4:22660081-22660100 Msa0156420:intron 10.0%
!! AATCATATTGTTTATAATAT+TGG - chr1_4:22660650-22660669 Msa0156420:intron 10.0%
!! ATTAATAAATATTTGTATCA+AGG + chr1_4:22660923-22660942 None:intergenic 10.0%
!! ATAAATAAGATTAAAATCTA+AGG - chr1_4:22661443-22661462 Msa0156420:intron 10.0%
!! TAAATAAGATTAAAATCTAA+GGG - chr1_4:22661444-22661463 Msa0156420:intron 10.0%
!! TAAATCATTCAATAAATTAA+AGG + chr1_4:22661534-22661553 None:intergenic 10.0%
!! TATGAATTAATTAAAGATTA+AGG + chr1_4:22662295-22662314 None:intergenic 10.0%
!! CCAAAAAAATAAAAATAAAT+TGG + chr1_4:22662597-22662616 None:intergenic 10.0%
!!! CCAATTTATTTTTATTTTTT+TGG - chr1_4:22662594-22662613 Msa0156420:intron 10.0%
!! TATATTATGTAATAAAGTAT+GGG + chr1_4:22663143-22663162 None:intergenic 10.0%
!! ATATATTATGTAATAAAGTA+TGG + chr1_4:22663144-22663163 None:intergenic 10.0%
!! AAAAAATTTATCGTAAAATA+TGG - chr1_4:22664424-22664443 Msa0156420:intron 10.0%
!! ATCTATAAAAATACATAAAA+AGG - chr1_4:22664606-22664625 Msa0156420:intron 10.0%
!! TTTAAGAAATTCATAATTAT+GGG - chr1_4:22664839-22664858 Msa0156420:intron 10.0%
!!! TTTTTTTTTTTTTGTTTTGA+AGG - chr1_4:22666390-22666409 Msa0156420:intron 10.0%
!! AAGAAATTTAATAATTGTAT+TGG + chr1_4:22667246-22667265 None:intergenic 10.0%
!!! TGAAATTTAATTAATTTTAC+AGG - chr1_4:22667896-22667915 Msa0156420:intron 10.0%
!!! AAAATAATAGAAATATTTTG+AGG + chr1_4:22668315-22668334 None:intergenic 10.0%
!!! TATGTTTTTTATTTAAGATT+TGG - chr1_4:22668622-22668641 Msa0156420:intron 10.0%
!!! ATGTTTTTTATTTAAGATTT+GGG - chr1_4:22668623-22668642 Msa0156420:intron 10.0%
!! AATTAATTAATTCTTCAGAA+TGG - chr1_4:22659619-22659638 Msa0156420:intron 15.0%
!! AATTTATTTCACTGTTTATA+AGG - chr1_4:22659846-22659865 Msa0156420:CDS 15.0%
!!! AATTTCTTTTCTTTAACTTA+TGG - chr1_4:22660755-22660774 Msa0156420:CDS 15.0%
!! TTTATGTATTTATCTAAGTT+TGG - chr1_4:22661126-22661145 Msa0156420:CDS 15.0%
!!! TCTTTTTTATATTAGCTATT+CGG - chr1_4:22661564-22661583 Msa0156420:CDS 15.0%
!! AATTAATTTCAATTTGTCAT+TGG + chr1_4:22662325-22662344 None:intergenic 15.0%
!! AAATAAATTGGTCAATAAAT+GGG + chr1_4:22662585-22662604 None:intergenic 15.0%
!! AAAATAAATTGGTCAATAAA+TGG + chr1_4:22662586-22662605 None:intergenic 15.0%
!! GAATTAAATACGAATTAAAA+CGG - chr1_4:22662679-22662698 Msa0156420:intron 15.0%
!!! AATTAAACAAATTTGATTTG+AGG - chr1_4:22662837-22662856 Msa0156420:intron 15.0%
!! AGAACTATTAAAATTAAGTA+AGG - chr1_4:22662902-22662921 Msa0156420:intron 15.0%
!!! TTAAAATGTCTCAATTTTAT+AGG - chr1_4:22662932-22662951 Msa0156420:intron 15.0%
!!! TAAAATGTCTCAATTTTATA+GGG - chr1_4:22662933-22662952 Msa0156420:intron 15.0%
!!! TATTTAACCCTATTTTTTTA+TGG - chr1_4:22662966-22662985 Msa0156420:intron 15.0%
!! TTAAATTGAAAGAACAATAA+AGG + chr1_4:22663177-22663196 None:intergenic 15.0%
!!! TATAAAATTACGTTTAAAGT+TGG - chr1_4:22663272-22663291 Msa0156420:intron 15.0%
!! ATTGATTGATAAAAATGATA+AGG - chr1_4:22663592-22663611 Msa0156420:intron 15.0%
!! GTTTAAGAAATTCATAATTA+TGG - chr1_4:22664838-22664857 Msa0156420:intron 15.0%
!! TTAAGAAATTCATAATTATG+GGG - chr1_4:22664840-22664859 Msa0156420:intron 15.0%
!!! TATATGTTTTTTATTTTGCA+TGG - chr1_4:22665049-22665068 Msa0156420:intron 15.0%
!!! ATTTTTTTTTAAGTACGAAA+AGG - chr1_4:22665208-22665227 Msa0156420:intron 15.0%
!!! TTTTTTTTTAAGTACGAAAA+GGG - chr1_4:22665209-22665228 Msa0156420:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr1_4:22666211-22666230 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr1_4:22666221-22666240 None:intergenic 15.0%
!!! AAATTCTTTTGTTTCTAATT+CGG - chr1_4:22666458-22666477 Msa0156420:intron 15.0%
!! AAAGAAATATTAAATGTTGA+AGG - chr1_4:22666854-22666873 Msa0156420:intron 15.0%
!! TTAGAGTTAGAAATAAATAT+AGG + chr1_4:22667182-22667201 None:intergenic 15.0%
!!! ATTTCTAACTCTAAAAAAAA+TGG - chr1_4:22667188-22667207 Msa0156420:intron 15.0%
!!! AAAAAAATGGAGAATTATTT+TGG - chr1_4:22667201-22667220 Msa0156420:intron 15.0%
!!! TTTATTTTTATGAGTTTGTT+TGG - chr1_4:22667372-22667391 Msa0156420:intron 15.0%
!!! ACAAAATAGGATTTATTTTT+GGG + chr1_4:22667418-22667437 None:intergenic 15.0%
!!! TATTTCTATTATTTTCTTCT+TGG - chr1_4:22668320-22668339 Msa0156420:intron 15.0%
!! TACAAATATATTTAACTCTT+AGG - chr1_4:22669044-22669063 Msa0156420:CDS 15.0%
!!! AAAGAAAATTTTAATGTAAC+AGG + chr1_4:22669160-22669179 None:intergenic 15.0%
!!! GTTACATTAAAATTTTCTTT+AGG - chr1_4:22669160-22669179 Msa0156420:intron 15.0%
!! ATATATATCTTATGTTAAAG+AGG - chr1_4:22669541-22669560 Msa0156420:exon 15.0%
!! TATATATCTTATGTTAAAGA+GGG - chr1_4:22669542-22669561 Msa0156420:exon 15.0%
!!! TTGACTTTTTTTTTTAGAGA+CGG + chr1_4:22659551-22659570 None:intergenic 20.0%
!! TTATAGTAAGCAACAATAAA+TGG - chr1_4:22659588-22659607 Msa0156420:intron 20.0%
!!! TTTTTAGTGTTATGTAACTT+AGG - chr1_4:22660026-22660045 Msa0156420:intron 20.0%
!! TAAAATACGAATACGAAATT+TGG + chr1_4:22660335-22660354 None:intergenic 20.0%
!! TACTATAATGTAAATAGACA+TGG + chr1_4:22660428-22660447 None:intergenic 20.0%
!!! TATTATTGATGGTCTTATAT+AGG - chr1_4:22660490-22660509 Msa0156420:CDS 20.0%
!!! ATTATTGATGGTCTTATATA+GGG - chr1_4:22660491-22660510 Msa0156420:CDS 20.0%
!! CTAAGTTTCAATTTCAATAT+TGG - chr1_4:22661077-22661096 Msa0156420:CDS 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr1_4:22661358-22661377 None:intergenic 20.0%
!! CATGTAAACTATATGAAAAA+TGG + chr1_4:22662351-22662370 None:intergenic 20.0%
!!! GAGTGCAAAAATTTTTTTTA+TGG - chr1_4:22662873-22662892 Msa0156420:intron 20.0%
!!! AATAGGGTTAAATATGTTTT+TGG + chr1_4:22662960-22662979 None:intergenic 20.0%
!!! GCATTTTCCATAAAAAAATA+GGG + chr1_4:22662976-22662995 None:intergenic 20.0%
!!! AGCATTTTCCATAAAAAAAT+AGG + chr1_4:22662977-22662996 None:intergenic 20.0%
!!! AAGTCAAAAAAGTTTCTTTT+TGG - chr1_4:22663078-22663097 Msa0156420:intron 20.0%
!! TGTAAAAGAAATATCTAATG+TGG - chr1_4:22663322-22663341 Msa0156420:intron 20.0%
!!! TCTAATGTGGTAATTATTTT+TGG - chr1_4:22663335-22663354 Msa0156420:intron 20.0%
!! TTGGATGAAATGAAATTAAT+AGG + chr1_4:22664091-22664110 None:intergenic 20.0%
!! AAACTCAAAAAACAAAACAA+CGG - chr1_4:22664536-22664555 Msa0156420:intron 20.0%
!!! ATTTAGTTTTCTAATTTTGC+AGG - chr1_4:22664739-22664758 Msa0156420:intron 20.0%
!!! AAATTAAATTTTTTCGACCA+GGG + chr1_4:22664890-22664909 None:intergenic 20.0%
!!! AAAATTAAATTTTTTCGACC+AGG + chr1_4:22664891-22664910 None:intergenic 20.0%
!!! TTCATATCTCTTATTTTGAA+TGG + chr1_4:22665092-22665111 None:intergenic 20.0%
!!! AATTTTATTTAGCACACTAT+TGG + chr1_4:22665119-22665138 None:intergenic 20.0%
!! ATAGTGTGCTAAATAAAATT+AGG - chr1_4:22665119-22665138 Msa0156420:intron 20.0%
!!! CCTATTTTGTATCTATATAT+GGG + chr1_4:22665362-22665381 None:intergenic 20.0%
!! CCATATATAGATACAAAATA+GGG - chr1_4:22665360-22665379 Msa0156420:intron 20.0%
!! TATATATAGATTAATATCCC+TGG + chr1_4:22665831-22665850 None:intergenic 20.0%
!! TATTATAGTGTTAGTTAGTT+AGG + chr1_4:22665927-22665946 None:intergenic 20.0%
!! CTAACACTATAATACTTATT+CGG - chr1_4:22665933-22665952 Msa0156420:intron 20.0%
!! AGTTAACATCTTGTAATTTA+TGG - chr1_4:22665963-22665982 Msa0156420:intron 20.0%
!!! GTTTTTGAAAAAGTTTATGA+AGG - chr1_4:22666068-22666087 Msa0156420:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1_4:22666125-22666144 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr1_4:22666263-22666282 Msa0156420:intron 20.0%
!!! AATTCTTTTGTTTCTAATTC+GGG - chr1_4:22666459-22666478 Msa0156420:intron 20.0%
!! TAAATGTTGAAGGTTATTAT+AGG - chr1_4:22666864-22666883 Msa0156420:intron 20.0%
!!! CTTTTTTAATTGTCACTTTT+GGG + chr1_4:22666954-22666973 None:intergenic 20.0%
!!! TCTTTTTTAATTGTCACTTT+TGG + chr1_4:22666955-22666974 None:intergenic 20.0%
!! AAGTGACAATTAAAAAAGAA+CGG - chr1_4:22666956-22666975 Msa0156420:intron 20.0%
!! TTGTTACATTAGGTATTAAT+GGG + chr1_4:22667307-22667326 None:intergenic 20.0%
!! TTTGTTACATTAGGTATTAA+TGG + chr1_4:22667308-22667327 None:intergenic 20.0%
!!! TCGTTTATATTTGTTACATT+AGG + chr1_4:22667317-22667336 None:intergenic 20.0%
!!! CAAAATAGGATTTATTTTTG+GGG + chr1_4:22667417-22667436 None:intergenic 20.0%
!!! CACAAAATAGGATTTATTTT+TGG + chr1_4:22667419-22667438 None:intergenic 20.0%
!! TACTGTATAAAACACAAAAT+AGG + chr1_4:22667431-22667450 None:intergenic 20.0%
!! AGTCATTAAAAATGTATTAG+AGG - chr1_4:22667816-22667835 Msa0156420:intron 20.0%
!!! TGATTTTTTTTGAAACATAG+AGG - chr1_4:22667846-22667865 Msa0156420:intron 20.0%
!!! AAAAAGTACATGTATGTATT+TGG + chr1_4:22667986-22668005 None:intergenic 20.0%
!!! TTATTTAAGATTTGGGTATA+TGG - chr1_4:22668630-22668649 Msa0156420:intron 20.0%
!!! TATTTAAGATTTGGGTATAT+GGG - chr1_4:22668631-22668650 Msa0156420:intron 20.0%
!! ATTGAACAAAATTTATGCAT+GGG + chr1_4:22668890-22668909 None:intergenic 20.0%
!! AATTGAACAAAATTTATGCA+TGG + chr1_4:22668891-22668910 None:intergenic 20.0%
!!! AGTCATTATTTTGTTTTTGA+AGG - chr1_4:22668913-22668932 Msa0156420:intron 20.0%
!! ATATATCTTATGTTAAAGAG+GGG - chr1_4:22669543-22669562 Msa0156420:exon 20.0%
!! AATGAAGAGCTTTTCAATTA+AGG - chr1_4:22659697-22659716 Msa0156420:intron 25.0%
!! TTTTCAATTAAGGTTGAGAA+AGG - chr1_4:22659707-22659726 Msa0156420:intron 25.0%
! ATTTCACTGTTTATAAGGTT+TGG - chr1_4:22659851-22659870 Msa0156420:CDS 25.0%
!! TTTGGTTTATGTTCATAGAT+AGG - chr1_4:22660099-22660118 Msa0156420:intron 25.0%
! TTCTCAATGTCTATTATTGA+TGG - chr1_4:22660479-22660498 Msa0156420:CDS 25.0%
! CTTATATAGGGTTCAAAAAT+TGG - chr1_4:22660503-22660522 Msa0156420:CDS 25.0%
! GGTTCAAAAATTGGAATTTA+TGG - chr1_4:22660512-22660531 Msa0156420:CDS 25.0%
! ATTGTTTATAATATTGGCGT+AGG - chr1_4:22660656-22660675 Msa0156420:intron 25.0%
!!! TGTTTTTGTTCAAGATAAGA+AGG - chr1_4:22660859-22660878 Msa0156420:intron 25.0%
!! TATTGGCTAACATTAATTTC+GGG + chr1_4:22661357-22661376 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG + chr1_4:22661511-22661530 None:intergenic 25.0%
! ATAAAATAATCCAACCTGAA+AGG - chr1_4:22661599-22661618 Msa0156420:CDS 25.0%
!!! AAAGTAAATTCTAAGATCTC+CGG + chr1_4:22662008-22662027 None:intergenic 25.0%
! TCTTAGAATTTACTTTGTAC+TGG - chr1_4:22662012-22662031 Msa0156420:intron 25.0%
! GAAACATTATAATGCATGTT+TGG + chr1_4:22662059-22662078 None:intergenic 25.0%
! TGATTAATACGAAACAATAC+AGG - chr1_4:22662098-22662117 Msa0156420:intron 25.0%
! GATTAATACGAAACAATACA+GGG - chr1_4:22662099-22662118 Msa0156420:intron 25.0%
!!! GAAGAATATTTTTTCCGTAA+CGG - chr1_4:22662458-22662477 Msa0156420:intron 25.0%
!!! TAAACAAATTTGATTTGAGG+AGG - chr1_4:22662840-22662859 Msa0156420:intron 25.0%
!!! AAACAAATTTGATTTGAGGA+GGG - chr1_4:22662841-22662860 Msa0156420:intron 25.0%
!! TTTTTATGGAAAATGCTAAC+CGG - chr1_4:22662980-22662999 Msa0156420:intron 25.0%
! TACTCATAAGAATACTAATG+AGG - chr1_4:22663548-22663567 Msa0156420:intron 25.0%
! TACTCATAAGAATACTAATG+AGG - chr1_4:22663548-22663567 Msa0156420:intron 25.0%
! ATGAAAAATTATTCCATGTG+TGG + chr1_4:22663863-22663882 None:intergenic 25.0%
!!! TGATTTATTTTCTATGACGA+TGG - chr1_4:22664003-22664022 Msa0156420:CDS 25.0%
!! CAACATTTTCAAAGATTTCT+TGG + chr1_4:22664045-22664064 None:intergenic 25.0%
! ATATAGACTCATTTAATCCA+AGG - chr1_4:22664344-22664363 Msa0156420:intron 25.0%
! TATAGACTCATTTAATCCAA+GGG - chr1_4:22664345-22664364 Msa0156420:intron 25.0%
! GTGTTAAGAACGTTAAAATA+TGG - chr1_4:22664448-22664467 Msa0156420:intron 25.0%
!! GAGCTCAAAATTTGATTTAT+AGG + chr1_4:22664571-22664590 None:intergenic 25.0%
!! AATTTCAATTTTGCACGTTT+TGG + chr1_4:22664687-22664706 None:intergenic 25.0%
! ACTACAAAATTTCATTGTGA+AGG + chr1_4:22664787-22664806 None:intergenic 25.0%
!!! ATTCATATTTAATTTGTCCC+TGG - chr1_4:22664870-22664889 Msa0156420:intron 25.0%
!! ATTTTGTATCTATATATGGG+TGG + chr1_4:22665359-22665378 None:intergenic 25.0%
! CCCATATATAGATACAAAAT+AGG - chr1_4:22665359-22665378 Msa0156420:intron 25.0%
!! CCCTATTTTGTATCTATATA+TGG + chr1_4:22665363-22665382 None:intergenic 25.0%
! ACATCTTGTAATTTATGGAA+TGG - chr1_4:22665968-22665987 Msa0156420:intron 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG + chr1_4:22666161-22666180 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr1_4:22666252-22666271 Msa0156420:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr1_4:22666253-22666272 Msa0156420:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr1_4:22666254-22666273 Msa0156420:intron 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr1_4:22666294-22666313 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr1_4:22666350-22666369 Msa0156420:intron 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr1_4:22666355-22666374 Msa0156420:intron 25.0%
! AAGTGACAATTAAAAAGGAA+CGG + chr1_4:22666433-22666452 None:intergenic 25.0%
! TGCAAAAGTGACAATTAAAA+AGG + chr1_4:22666438-22666457 None:intergenic 25.0%
!!! ATTCTTTTGTTTCTAATTCG+GGG - chr1_4:22666460-22666479 Msa0156420:intron 25.0%
! TTTACAATTTATCTGCATTC+AGG - chr1_4:22666682-22666701 Msa0156420:intron 25.0%
! TTACAATTTATCTGCATTCA+GGG - chr1_4:22666683-22666702 Msa0156420:intron 25.0%
! AAAGTGACAGTTAATTAGAA+GGG + chr1_4:22666757-22666776 None:intergenic 25.0%
! TAAATAACCAAGGGTAATAA+AGG + chr1_4:22666812-22666831 None:intergenic 25.0%
! GTAAAATGTAATTGTTGTCT+TGG - chr1_4:22666915-22666934 Msa0156420:intron 25.0%
!!! TTCAATCAATTTTTTGTTGC+AGG - chr1_4:22667029-22667048 Msa0156420:CDS 25.0%
!! TGTGTTTTATACAGTAAACT+TGG - chr1_4:22667435-22667454 Msa0156420:intron 25.0%
!! ATACATTTTTAATGACTCGA+TGG + chr1_4:22667813-22667832 None:intergenic 25.0%
! TAACTGTATTCAATGAATTG+CGG - chr1_4:22668121-22668140 Msa0156420:intron 25.0%
!! TTGTTAACTCAGGATTTTTA+TGG + chr1_4:22668239-22668258 None:intergenic 25.0%
!!! TAATAGAAATATTTTGAGGC+AGG + chr1_4:22668311-22668330 None:intergenic 25.0%
! ATTGTTTGGTATATATCCTA+GGG - chr1_4:22668370-22668389 Msa0156420:CDS 25.0%
! ATAATCCTCATAATACCATT+AGG + chr1_4:22668414-22668433 None:intergenic 25.0%
! ATACTTACATCTTCAACTAT+TGG + chr1_4:22668519-22668538 None:intergenic 25.0%
! TTATTAGCAACATCTTCATT+TGG + chr1_4:22668693-22668712 None:intergenic 25.0%
! TAGAGACTAAAATTTCTACA+GGG - chr1_4:22668994-22669013 Msa0156420:intron 25.0%
! CAGAAATATACTCAATATAG+TGG + chr1_4:22669115-22669134 None:intergenic 25.0%
! CAACATGATCAAGTATTATA+AGG - chr1_4:22669459-22669478 Msa0156420:CDS 25.0%
!!! AATTTGTTACTATTTGTTCG+AGG + chr1_4:22669601-22669620 None:intergenic 25.0%
!!! AAATTTGTTGACATTGTAAC+AGG - chr1_4:22669659-22669678 Msa0156420:intron 25.0%
AATTAAGGTTGAGAAAGGAA+AGG - chr1_4:22659712-22659731 Msa0156420:intron 30.0%
AAAGGAAAGGAAGGAAAAAA+TGG - chr1_4:22659725-22659744 Msa0156420:intron 30.0%
TTGTATGTCTTCCAAACATA+TGG + chr1_4:22660126-22660145 None:intergenic 30.0%
ATATGTTTGGAAGACATACA+AGG - chr1_4:22660125-22660144 Msa0156420:intron 30.0%
ATTGTTCAATCAAGATCAGA+CGG - chr1_4:22660308-22660327 Msa0156420:intron 30.0%
AGACATTGAGAAGATTTCAT+TGG + chr1_4:22660471-22660490 None:intergenic 30.0%
TCAAGATAAGAAGGTTAAAG+AGG - chr1_4:22660868-22660887 Msa0156420:intron 30.0%
! CTGCAGACAATATATGTTTT+TGG + chr1_4:22661009-22661028 None:intergenic 30.0%
! AAATCCTCTAAGAGATTGAA+AGG - chr1_4:22661047-22661066 Msa0156420:CDS 30.0%
ATTACCTTTCAATCTCTTAG+AGG + chr1_4:22661054-22661073 None:intergenic 30.0%
CTGGAATTAAACCATATACA+TGG - chr1_4:22661228-22661247 Msa0156420:intron 30.0%
! ACGAATTGATTCCATGTATA+TGG + chr1_4:22661242-22661261 None:intergenic 30.0%
ATGGAATCAATTCGTACAAA+AGG - chr1_4:22661247-22661266 Msa0156420:intron 30.0%
AATCAATTCGTACAAAAGGT+AGG - chr1_4:22661251-22661270 Msa0156420:intron 30.0%
! AGGTAGGTGTATGTTATTTA+AGG - chr1_4:22661267-22661286 Msa0156420:intron 30.0%
GTCTACAATTATGATTTCTC+TGG - chr1_4:22661645-22661664 Msa0156420:intron 30.0%
TCATTGATCGCATAAATTTC+AGG + chr1_4:22661717-22661736 None:intergenic 30.0%
TATGCGATCAATGATGTTTA+AGG - chr1_4:22661723-22661742 Msa0156420:intron 30.0%
ATGCGATCAATGATGTTTAA+GGG - chr1_4:22661724-22661743 Msa0156420:intron 30.0%
AACTTGCATGATTTGATTGA+AGG + chr1_4:22661826-22661845 None:intergenic 30.0%
ACTTTAATTGTCAAACTCAC+GGG + chr1_4:22661878-22661897 None:intergenic 30.0%
CACTTTAATTGTCAAACTCA+CGG + chr1_4:22661879-22661898 None:intergenic 30.0%
!! AAGTAAATTCTAAGATCTCC+GGG + chr1_4:22662007-22662026 None:intergenic 30.0%
! GGACATTTCTTCTTTTGATA+AGG + chr1_4:22662038-22662057 None:intergenic 30.0%
TGCACAATAATGTATACAAG+TGG - chr1_4:22662168-22662187 Msa0156420:intron 30.0%
TGTGTTAAAACAACACCTTT+AGG + chr1_4:22662207-22662226 None:intergenic 30.0%
! TCTTTTCATGGAACAATTTG+AGG - chr1_4:22662260-22662279 Msa0156420:intron 30.0%
ATTCTTCAATACAACGATCA+AGG + chr1_4:22662445-22662464 None:intergenic 30.0%
AGTACTTGTAGAAAGATAGA+CGG - chr1_4:22662551-22662570 Msa0156420:intron 30.0%
CATGTTAACTGATATCTCTA+GGG + chr1_4:22663119-22663138 None:intergenic 30.0%
TCATGTTAACTGATATCTCT+AGG + chr1_4:22663120-22663139 None:intergenic 30.0%
AAAGAAGTCTTTCTTGAGAA+TGG - chr1_4:22663729-22663748 Msa0156420:intron 30.0%
TTGAGAATGGCTCATATATA+GGG - chr1_4:22663742-22663761 Msa0156420:intron 30.0%
! GATCTGATGGTTTTTATTCA+TGG + chr1_4:22663810-22663829 None:intergenic 30.0%
CAAAACTCTTCTTAGAAGAA+AGG + chr1_4:22663934-22663953 None:intergenic 30.0%
TAACACAGTTATTGCTAGAT+TGG + chr1_4:22664110-22664129 None:intergenic 30.0%
CCGCACAAAATTTAATTGTT+GGG + chr1_4:22664148-22664167 None:intergenic 30.0%
! CCCAACAATTAAATTTTGTG+CGG - chr1_4:22664145-22664164 Msa0156420:intron 30.0%
TCCGCACAAAATTTAATTGT+TGG + chr1_4:22664149-22664168 None:intergenic 30.0%
AAACTGTGTCAAAGAATAAG+AGG - chr1_4:22664233-22664252 Msa0156420:intron 30.0%
!!! TTACGATAAATTTTTTGCCC+AGG + chr1_4:22664420-22664439 None:intergenic 30.0%
TTTAACGTGCTAAACATGTA+TGG - chr1_4:22664927-22664946 Msa0156420:intron 30.0%
TAAATATGTGTGTCAACATG+TGG - chr1_4:22665490-22665509 Msa0156420:intron 30.0%
CCAAATACGTAAGGAATAAA+GGG + chr1_4:22665773-22665792 None:intergenic 30.0%
!!! TAAACTTTTTCAAAAACCCG+TGG + chr1_4:22666065-22666084 None:intergenic 30.0%
TGAAAAAGTTTATGAAGGCA+AGG - chr1_4:22666073-22666092 Msa0156420:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr1_4:22666116-22666135 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr1_4:22666117-22666136 None:intergenic 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr1_4:22666533-22666552 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr1_4:22666534-22666553 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr1_4:22666654-22666673 Msa0156420:intron 30.0%
GAAAGTGACAGTTAATTAGA+AGG + chr1_4:22666758-22666777 None:intergenic 30.0%
TTTCTGCAGTAAATAACCAA+GGG + chr1_4:22666821-22666840 None:intergenic 30.0%
TGACAATTAAAAAAGAACGG+AGG - chr1_4:22666959-22666978 Msa0156420:CDS 30.0%
GACAATTAAAAAAGAACGGA+GGG - chr1_4:22666960-22666979 Msa0156420:CDS 30.0%
! TTTTATACAGTAAACTTGGC+TGG - chr1_4:22667439-22667458 Msa0156420:intron 30.0%
TGCATGTACTAGTAATGTTA+CGG - chr1_4:22667555-22667574 Msa0156420:intron 30.0%
CGTGTTAGACTAATAATATC+TGG - chr1_4:22667635-22667654 Msa0156420:intron 30.0%
GTTAGACTAATAATATCTGG+AGG - chr1_4:22667638-22667657 Msa0156420:intron 30.0%
!!! CAATTTTTGAGATAGTTCCA+AGG + chr1_4:22667742-22667761 None:intergenic 30.0%
TATTCCCTCTGAACTTAATT+TGG - chr1_4:22667959-22667978 Msa0156420:intron 30.0%
ACAATGATACACTGACATTA+AGG - chr1_4:22668011-22668030 Msa0156420:CDS 30.0%
GACATTAAGGTTAATATTCC+AGG - chr1_4:22668024-22668043 Msa0156420:CDS 30.0%
ACAAAAGAAGCCATAATAGA+TGG - chr1_4:22668255-22668274 Msa0156420:intron 30.0%
CATTGTTTGGTATATATCCT+AGG - chr1_4:22668369-22668388 Msa0156420:CDS 30.0%
TTGTTTGGTATATATCCTAG+GGG - chr1_4:22668371-22668390 Msa0156420:CDS 30.0%
GTATTATGAGGATTATTGAC+AGG - chr1_4:22668418-22668437 Msa0156420:intron 30.0%
AATCTTGTTAAGCTTTCTCA+AGG - chr1_4:22668447-22668466 Msa0156420:intron 30.0%
ATGAAGATGTTGCTAATAAG+TGG - chr1_4:22668694-22668713 Msa0156420:CDS 30.0%
TGAAGATGTTGCTAATAAGT+GGG - chr1_4:22668695-22668714 Msa0156420:CDS 30.0%
ATAGCACATATCTCTTCAAT+TGG + chr1_4:22668770-22668789 None:intergenic 30.0%
!!! TTTTTGAAGGCATTAAATGC+AGG - chr1_4:22668926-22668945 Msa0156420:intron 30.0%
GTAGAGACTAAAATTTCTAC+AGG - chr1_4:22668993-22669012 Msa0156420:intron 30.0%
ATCATTTCATCAATAGTGCA+TGG + chr1_4:22669233-22669252 None:intergenic 30.0%
CAAATTTGTACTACCAAGTT+TGG - chr1_4:22669282-22669301 Msa0156420:CDS 30.0%
TTAGAGATTCATACCAAACT+TGG + chr1_4:22669298-22669317 None:intergenic 30.0%
TAGAGGCAGAAAAAATGAAA+AGG + chr1_4:22669332-22669351 None:intergenic 30.0%
CCTCTATGAAATTAGTTGAA+GGG - chr1_4:22669346-22669365 Msa0156420:intron 30.0%
AAGGGATTTGAACATATCAA+AGG - chr1_4:22669364-22669383 Msa0156420:intron 30.0%
AAGTCTCTTTCCATATCAAA+TGG + chr1_4:22669409-22669428 None:intergenic 30.0%
ATTTGATATGGAAAGAGACT+TGG - chr1_4:22669408-22669427 Msa0156420:CDS 30.0%
CTGCAACATTGAAAAAGAAA+AGG - chr1_4:22669434-22669453 Msa0156420:CDS 30.0%
AAGAGACAACATCTTAGTAA+GGG + chr1_4:22669507-22669526 None:intergenic 30.0%
AAAGAGACAACATCTTAGTA+AGG + chr1_4:22669508-22669527 None:intergenic 30.0%
!! GGAGTAATAAGGTTGATATT+GGG - chr1_4:22669564-22669583 Msa0156420:intron 30.0%
GAACTATACAAAAGTTTGAC+TGG - chr1_4:22669693-22669712 Msa0156420:intron 30.0%
AGGTAGAAACCTCAAAATTT+AGG + chr1_4:22669726-22669745 None:intergenic 30.0%
TAAGTACAACAAGCAACTTT+AGG + chr1_4:22669806-22669825 None:intergenic 30.0%
!! CACTTGTTTTCTTCAAACAT+GGG + chr1_4:22669854-22669873 None:intergenic 30.0%
!! ACACTTGTTTTCTTCAAACA+TGG + chr1_4:22669855-22669874 None:intergenic 30.0%
!! CATACTATTGGTGTTATGTT+TGG - chr1_4:22669919-22669938 Msa0156420:five_prime_UTR 30.0%
GAGAAAATGAATTGCTCTTT+AGG - chr1_4:22669996-22670015 Msa0156420:five_prime_UTR 30.0%
TTTAACGTAATGATGCTAGC+TGG + chr1_4:22659527-22659546 None:intergenic 35.0%
AAAAATGGCATGCTTTCTGT+TGG - chr1_4:22659740-22659759 Msa0156420:intron 35.0%
!! CATTTTTGGAGAGAAGGTTA+CGG + chr1_4:22659775-22659794 None:intergenic 35.0%
!! GGAATTCATTTTTGGAGAGA+AGG + chr1_4:22659781-22659800 None:intergenic 35.0%
! CATTGGAGGGAATTCATTTT+TGG + chr1_4:22659789-22659808 None:intergenic 35.0%
CAAAAATGAATTCCCTCCAA+TGG - chr1_4:22659787-22659806 Msa0156420:CDS 35.0%
! GCGTAAAATTGTTGATGGAA+AGG - chr1_4:22659973-22659992 Msa0156420:intron 35.0%
CATAGATAGGACCATATGTT+TGG - chr1_4:22660112-22660131 Msa0156420:intron 35.0%
TGATTGAACAATGATCAGTG+TGG + chr1_4:22660300-22660319 None:intergenic 35.0%
ACCGTCCTTATCTTAATCAA+CGG - chr1_4:22660369-22660388 Msa0156420:intron 35.0%
! ACCGTTGATTAAGATAAGGA+CGG + chr1_4:22660373-22660392 None:intergenic 35.0%
! GATGACCGTTGATTAAGATA+AGG + chr1_4:22660377-22660396 None:intergenic 35.0%
TTAATCAACGGTCATCAATG+TGG - chr1_4:22660381-22660400 Msa0156420:intron 35.0%
!! TGCATCAAAAGCACTTAATC+AGG + chr1_4:22660792-22660811 None:intergenic 35.0%
! TGATTAAGTGCTTTTGATGC+AGG - chr1_4:22660791-22660810 Msa0156420:CDS 35.0%
AAATGCCTTCAATTGTTAGC+TGG + chr1_4:22661109-22661128 None:intergenic 35.0%
CTAAGTTTGGTTGTTGTATG+TGG - chr1_4:22661139-22661158 Msa0156420:CDS 35.0%
GGAATCTTGATCCACAATAA+GGG - chr1_4:22661758-22661777 Msa0156420:intron 35.0%
AAAGTTACACTCCCTTATTG+TGG + chr1_4:22661772-22661791 None:intergenic 35.0%
! ATGCACTCCATTAGTCTATT+TGG - chr1_4:22661938-22661957 Msa0156420:intron 35.0%
AAAGGAGGACAAATACTTGA+CGG + chr1_4:22662135-22662154 None:intergenic 35.0%
ATGTATACAAGTGGAACTAG+TGG - chr1_4:22662177-22662196 Msa0156420:intron 35.0%
!! AACGTACTAGCTTTAGTAAG+AGG - chr1_4:22662231-22662250 Msa0156420:intron 35.0%
!! ACTAGCTTTAGTAAGAGGAA+TGG - chr1_4:22662236-22662255 Msa0156420:intron 35.0%
! AAGAGGAATGGATCTTTTCA+TGG - chr1_4:22662248-22662267 Msa0156420:intron 35.0%
CTACACACACAGTATTTAAG+TGG + chr1_4:22663365-22663384 None:intergenic 35.0%
TGAAGAGTCATGAGATGATA+AGG - chr1_4:22663515-22663534 Msa0156420:intron 35.0%
CTTGAGAATGGCTCATATAT+AGG - chr1_4:22663741-22663760 Msa0156420:intron 35.0%
ATTCTTTCTTCTACCTTCCT+TGG - chr1_4:22663881-22663900 Msa0156420:intron 35.0%
! GTGATACTTGCATTTGAGAT+AGG + chr1_4:22663967-22663986 None:intergenic 35.0%
GCATAGAGGAAATATGAGAT+TGG - chr1_4:22664293-22664312 Msa0156420:intron 35.0%
ATATGAGATTGGATTGAGTG+TGG - chr1_4:22664304-22664323 Msa0156420:intron 35.0%
TTATTTAGCACACTATTGGC+AGG + chr1_4:22665115-22665134 None:intergenic 35.0%
TTAAGTACGAAAAGGGCTAT+TGG - chr1_4:22665216-22665235 Msa0156420:intron 35.0%
TAAGTACGAAAAGGGCTATT+GGG - chr1_4:22665217-22665236 Msa0156420:intron 35.0%
! CTATATATGGGTGGATTCTA+GGG + chr1_4:22665350-22665369 None:intergenic 35.0%
! TCTATATATGGGTGGATTCT+AGG + chr1_4:22665351-22665370 None:intergenic 35.0%
TAGATACAAAATAGGGACAG+AGG - chr1_4:22665367-22665386 Msa0156420:intron 35.0%
CTGATCTTTATTCCAACACT+CGG + chr1_4:22665408-22665427 None:intergenic 35.0%
! TTGGGTGACATTGATTACAT+TGG - chr1_4:22665629-22665648 Msa0156420:intron 35.0%
! AAGCATTGTGACATTGTGAT+TGG + chr1_4:22665694-22665713 None:intergenic 35.0%
TACATAGAGTTGTGTGACAT+TGG + chr1_4:22665729-22665748 None:intergenic 35.0%
CCCTTTATTCCTTACGTATT+TGG - chr1_4:22665770-22665789 Msa0156420:intron 35.0%
GCCAAATACGTAAGGAATAA+AGG + chr1_4:22665774-22665793 None:intergenic 35.0%
!!! ATGTTTTGGCCAAATACGTA+AGG + chr1_4:22665782-22665801 None:intergenic 35.0%
ATAGATTAATATCCCTGGAC+CGG + chr1_4:22665826-22665845 None:intergenic 35.0%
ACTCTATTAGTTAGTGTAGC+TGG + chr1_4:22665867-22665886 None:intergenic 35.0%
! TTATGGAATGGTTTGCATGA+AGG - chr1_4:22665980-22665999 Msa0156420:intron 35.0%
TTAAAGCCAACATTGTTTGC+TGG - chr1_4:22666035-22666054 Msa0156420:intron 35.0%
TGACAATTATAAAGGAACGG+AGG - chr1_4:22666358-22666377 Msa0156420:intron 35.0%
GACAATTATAAAGGAACGGA+GGG - chr1_4:22666359-22666378 Msa0156420:intron 35.0%
GACAATTAAAAAGGAACGGA+GGG + chr1_4:22666429-22666448 None:intergenic 35.0%
TGACAATTAAAAAGGAACGG+AGG + chr1_4:22666430-22666449 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG - chr1_4:22666486-22666505 Msa0156420:intron 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG - chr1_4:22666487-22666506 Msa0156420:intron 35.0%
ACTAACAGAGTCTACATTCA+GGG - chr1_4:22666590-22666609 Msa0156420:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr1_4:22666622-22666641 Msa0156420:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr1_4:22666653-22666672 Msa0156420:intron 35.0%
! AGTCACTTTAGTCCCTAAAT+CGG + chr1_4:22666729-22666748 None:intergenic 35.0%
! TGTTTTGCCTTTATTACCCT+TGG - chr1_4:22666802-22666821 Msa0156420:CDS 35.0%
CTTTCTGCAGTAAATAACCA+AGG + chr1_4:22666822-22666841 None:intergenic 35.0%
TAAGGAGAAGGTTCAGAAAT+TGG + chr1_4:22667582-22667601 None:intergenic 35.0%
TTTGACCTAATGGTGTGTTA+AGG + chr1_4:22667600-22667619 None:intergenic 35.0%
TTCTTCAATCTCAGAGCTTA+AGG + chr1_4:22667669-22667688 None:intergenic 35.0%
!! TCACACTTGTCCTTTTTAGT+TGG - chr1_4:22667786-22667805 Msa0156420:intron 35.0%
TGGTCCAAATTAAGTTCAGA+GGG + chr1_4:22667966-22667985 None:intergenic 35.0%
TTGGTCCAAATTAAGTTCAG+AGG + chr1_4:22667967-22667986 None:intergenic 35.0%
TCTGGAAATGTAAGAGTAGT+TGG + chr1_4:22668069-22668088 None:intergenic 35.0%
!!! AGAGGCAAAAGTGTTTTCAT+TGG - chr1_4:22668210-22668229 Msa0156420:intron 35.0%
! ATGGCTTCTTTTGTTAACTC+AGG + chr1_4:22668249-22668268 None:intergenic 35.0%
AAGAAGCCATAATAGATGGA+TGG - chr1_4:22668259-22668278 Msa0156420:intron 35.0%
! GATTGTGTTGTGTCATTGTT+TGG - chr1_4:22668356-22668375 Msa0156420:intron 35.0%
ATTGGAGAAATGCTTCCTAA+TGG - chr1_4:22668396-22668415 Msa0156420:CDS 35.0%
TGCTTCCTAATGGTATTATG+AGG - chr1_4:22668406-22668425 Msa0156420:CDS 35.0%
GAATAGCTTCAAGTCAATAC+TGG - chr1_4:22668653-22668672 Msa0156420:intron 35.0%
AATAAGTGGGCATATGCAAA+TGG - chr1_4:22668708-22668727 Msa0156420:CDS 35.0%
TGAGAAACAAGGTAACACAT+AGG - chr1_4:22668811-22668830 Msa0156420:intron 35.0%
TTTCTGTATCCAGTGTTATG+TGG - chr1_4:22669129-22669148 Msa0156420:intron 35.0%
GCCTCTATGAAATTAGTTGA+AGG - chr1_4:22669345-22669364 Msa0156420:intron 35.0%
CCCTTCAACTAATTTCATAG+AGG + chr1_4:22669349-22669368 None:intergenic 35.0%
TTTCCATATCAAATGGAAGC+GGG + chr1_4:22669402-22669421 None:intergenic 35.0%
CTTTCCATATCAAATGGAAG+CGG + chr1_4:22669403-22669422 None:intergenic 35.0%
TGTTAAAGAGGGGAGTAATA+AGG - chr1_4:22669553-22669572 Msa0156420:intron 35.0%
!! GGGAGTAATAAGGTTGATAT+TGG - chr1_4:22669563-22669582 Msa0156420:intron 35.0%
! GGAGATAAGCCTAAATTTTG+AGG - chr1_4:22669714-22669733 Msa0156420:intron 35.0%
ATGTGCTACAAGCATACTAT+TGG - chr1_4:22669907-22669926 Msa0156420:five_prime_UTR 35.0%
ATGTTTGGATCCTACTAGTA+TGG - chr1_4:22669934-22669953 Msa0156420:five_prime_UTR 35.0%
GAGTGAAACCTTAGTATGTG+AGG + chr1_4:22659308-22659327 None:intergenic 40.0%
CTAAGGTTTCACTCACTCTT+TGG - chr1_4:22659314-22659333 Msa0156420:three_prime_UTR 40.0%
AAGGTTGAGAAAGGAAAGGA+AGG - chr1_4:22659716-22659735 Msa0156420:intron 40.0%
TGAAATCAGGATCCATTGGA+GGG + chr1_4:22659802-22659821 None:intergenic 40.0%
GGATGGCGTAAAATTGTTGA+TGG - chr1_4:22659968-22659987 Msa0156420:intron 40.0%
!! GCTTCTGCTTTAAAAGCATG+TGG - chr1_4:22660174-22660193 Msa0156420:intron 40.0%
! TGTGGTGCTAAATCTGTAAG+TGG - chr1_4:22660192-22660211 Msa0156420:intron 40.0%
CATGGAGTCACAATTTAGTG+AGG + chr1_4:22660410-22660429 None:intergenic 40.0%
TCCATTGCGATAATCCATTG+CGG + chr1_4:22660548-22660567 None:intergenic 40.0%
TACCAAGTGTGTCATAGAGA+GGG + chr1_4:22660710-22660729 None:intergenic 40.0%
TTACCAAGTGTGTCATAGAG+AGG + chr1_4:22660711-22660730 None:intergenic 40.0%
ATGCTCCAGCTAACAATTGA+AGG - chr1_4:22661101-22661120 Msa0156420:CDS 40.0%
TAATGAAGTGAAGCCCACTA+TGG + chr1_4:22661177-22661196 None:intergenic 40.0%
AACTGAGGAAGAGAAAGATG+AGG - chr1_4:22661196-22661215 Msa0156420:intron 40.0%
TGGTTTAATTCCAGCGTTTG+TGG + chr1_4:22661222-22661241 None:intergenic 40.0%
TAGCCAATAAAATCTCAGCC+TGG - chr1_4:22661368-22661387 Msa0156420:intron 40.0%
ATAATCCAACCTGAAAGGAG+TGG - chr1_4:22661604-22661623 Msa0156420:CDS 40.0%
!! ATGTTTAAGGGTATCGCAAC+TGG - chr1_4:22661736-22661755 Msa0156420:intron 40.0%
!! TGTTTAAGGGTATCGCAACT+GGG - chr1_4:22661737-22661756 Msa0156420:intron 40.0%
GGGAATCTTGATCCACAATA+AGG - chr1_4:22661757-22661776 Msa0156420:intron 40.0%
CCTCACTCCAAATAGACTAA+TGG + chr1_4:22661948-22661967 None:intergenic 40.0%
! CCATTAGTCTATTTGGAGTG+AGG - chr1_4:22661945-22661964 Msa0156420:intron 40.0%
TCGCACATACTCTTTAATCC+CGG - chr1_4:22661986-22662005 Msa0156420:intron 40.0%
AAGGAGGACAAATACTTGAC+GGG + chr1_4:22662134-22662153 None:intergenic 40.0%
GTCAAGTATTTGTCCTCCTT+TGG - chr1_4:22662134-22662153 Msa0156420:intron 40.0%
CATGGAACAATTTGAGGACA+AGG - chr1_4:22662266-22662285 Msa0156420:intron 40.0%
TTGCTTTGTGTAGATGACTG+TGG - chr1_4:22662382-22662401 Msa0156420:intron 40.0%
GATCAAGGATGTGAGCTAAA+GGG + chr1_4:22662430-22662449 None:intergenic 40.0%
!!! TTTGCGACAGTTTTTTGCAG+AGG - chr1_4:22662749-22662768 Msa0156420:intron 40.0%
TCATATATAGGGTGACGTCT+AGG - chr1_4:22663753-22663772 Msa0156420:intron 40.0%
CATATATAGGGTGACGTCTA+GGG - chr1_4:22663754-22663773 Msa0156420:intron 40.0%
CGTACATCATAAGATCTGGT+AGG + chr1_4:22663840-22663859 None:intergenic 40.0%
AATCCAAGGGTCAAAATGAG+TGG - chr1_4:22664358-22664377 Msa0156420:intron 40.0%
CCAGGAAAATTATAGAGCCT+GGG - chr1_4:22664400-22664419 Msa0156420:intron 40.0%
CCTGTGAGTATACACTTACT+CGG + chr1_4:22664715-22664734 None:intergenic 40.0%
AAATTGAGCTAACCGAGTGT+TGG - chr1_4:22665393-22665412 Msa0156420:intron 40.0%
ATATGTGTGTCAACATGTGG+AGG - chr1_4:22665493-22665512 Msa0156420:intron 40.0%
TATGTGTGTCAACATGTGGA+GGG - chr1_4:22665494-22665513 Msa0156420:intron 40.0%
ACACTTGTGTGACATAGAGT+TGG - chr1_4:22665539-22665558 Msa0156420:intron 40.0%
CACTTGTGTGACATAGAGTT+GGG - chr1_4:22665540-22665559 Msa0156420:intron 40.0%
! AAGCATTGTGACATTGTGAC+TGG + chr1_4:22665575-22665594 None:intergenic 40.0%
ACACTTGTGTGACATAGAGT+TGG - chr1_4:22665539-22665558 Msa0156420:intron 40.0%
CACTTGTGTGACATAGAGTT+GGG - chr1_4:22665540-22665559 Msa0156420:intron 40.0%
! TTGTGTGACATTGGTGACAT+TGG + chr1_4:22665720-22665739 None:intergenic 40.0%
GTAAGGAATAAAGGGAGCTT+CGG + chr1_4:22665765-22665784 None:intergenic 40.0%
ATTTGGCCAAAACATGCGTT+AGG - chr1_4:22665787-22665806 Msa0156420:intron 40.0%
GACTAACAGAGTCTACATTC+AGG - chr1_4:22666589-22666608 Msa0156420:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr1_4:22666621-22666640 Msa0156420:intron 40.0%
CTTTAGTCCCTAAATCGGAA+GGG + chr1_4:22666724-22666743 None:intergenic 40.0%
ACTTTAGTCCCTAAATCGGA+AGG + chr1_4:22666725-22666744 None:intergenic 40.0%
CATGCTCTACAACTAGTAAG+TGG - chr1_4:22667103-22667122 Msa0156420:CDS 40.0%
AAACTTGGCTGGATGAACAA+AGG - chr1_4:22667450-22667469 Msa0156420:intron 40.0%
!! AGATCTACTAGCCTTCAGAA+AGG - chr1_4:22667503-22667522 Msa0156420:intron 40.0%
CTAATGGTGTGTTAAGGAGA+AGG + chr1_4:22667594-22667613 None:intergenic 40.0%
CTTCTCCTTAACACACCATT+AGG - chr1_4:22667592-22667611 Msa0156420:intron 40.0%
ACTCGATGGACCAACTAAAA+AGG + chr1_4:22667799-22667818 None:intergenic 40.0%
TGTATTCAATGAATTGCGGC+TGG - chr1_4:22668125-22668144 Msa0156420:intron 40.0%
GTGGAACCATCCATCTATTA+TGG + chr1_4:22668268-22668287 None:intergenic 40.0%
GAAGAGAAAATCAACCTGTG+TGG + chr1_4:22668287-22668306 None:intergenic 40.0%
GTATATATCCTAGGGGACAT+TGG - chr1_4:22668378-22668397 Msa0156420:CDS 40.0%
CAAGTTCAGTGAACACTTTC+TGG - chr1_4:22668548-22668567 Msa0156420:CDS 40.0%
AAGCGAACATAGTTTGGAGA+AGG + chr1_4:22668745-22668764 None:intergenic 40.0%
TTGGTCAAGCGAACATAGTT+TGG + chr1_4:22668751-22668770 None:intergenic 40.0%
ATCTACAGCTGTGAGAAACA+AGG - chr1_4:22668800-22668819 Msa0156420:intron 40.0%
CAGGATTTACCACATAACAC+TGG + chr1_4:22669141-22669160 None:intergenic 40.0%
AGGTTTCTACCTTCTAGACT+CGG - chr1_4:22669734-22669753 Msa0156420:intron 40.0%
TAGACATATCCGAGTCTAGA+AGG + chr1_4:22669746-22669765 None:intergenic 40.0%
GCCAATATGCTATTACAGCA+CGG + chr1_4:22669962-22669981 None:intergenic 40.0%
GTCTCACACCTCACATACTA+AGG - chr1_4:22659297-22659316 Msa0156420:three_prime_UTR 45.0%
GAGAGAAGGTTACGGTAAAC+AGG + chr1_4:22659767-22659786 None:intergenic 45.0%
GTGAAATCAGGATCCATTGG+AGG + chr1_4:22659803-22659822 None:intergenic 45.0%
GAGGTGAAATCAGGATCCAT+TGG + chr1_4:22659806-22659825 None:intergenic 45.0%
ATCCTGATTTCACCTCTGCT+TGG - chr1_4:22659810-22659829 Msa0156420:CDS 45.0%
TCCTGATTTCACCTCTGCTT+GGG - chr1_4:22659811-22659830 Msa0156420:CDS 45.0%
CCTGAAAATATCCCAAGCAG+AGG + chr1_4:22659825-22659844 None:intergenic 45.0%
! CCTCTGCTTGGGATATTTTC+AGG - chr1_4:22659822-22659841 Msa0156420:CDS 45.0%
TTTGTCAAAGAGACGAGACG+AGG - chr1_4:22660056-22660075 Msa0156420:intron 45.0%
GTTGAATGCATGCAGTCACA+CGG + chr1_4:22660278-22660297 None:intergenic 45.0%
ATGGATCTAACTGTCCGCAA+TGG - chr1_4:22660531-22660550 Msa0156420:CDS 45.0%
!! TCCGCAATGGATTATCGCAA+TGG - chr1_4:22660544-22660563 Msa0156420:CDS 45.0%
!! GCAATGGATTATCGCAATGG+AGG - chr1_4:22660547-22660566 Msa0156420:CDS 45.0%
! AGTGCTTTTGATGCAGGTTC+TGG - chr1_4:22660797-22660816 Msa0156420:CDS 45.0%
GCTACACTTACAGCCATAGT+GGG - chr1_4:22661161-22661180 Msa0156420:CDS 45.0%
GGGCTTCACTTCATTAACTG+AGG - chr1_4:22661181-22661200 Msa0156420:CDS 45.0%
CAATAAAATCTCAGCCTGGC+CGG - chr1_4:22661372-22661391 Msa0156420:intron 45.0%
! CTATACCACTCCTTTCAGGT+TGG + chr1_4:22661612-22661631 None:intergenic 45.0%
CAACCTGAAAGGAGTGGTAT+AGG - chr1_4:22661610-22661629 Msa0156420:CDS 45.0%
CATATGTCATGAGCCAAAGG+AGG + chr1_4:22662150-22662169 None:intergenic 45.0%
GTGCATATGTCATGAGCCAA+AGG + chr1_4:22662153-22662172 None:intergenic 45.0%
GGAACTAGTGGAGATCCTAA+AGG - chr1_4:22662189-22662208 Msa0156420:intron 45.0%
CGATCAAGGATGTGAGCTAA+AGG + chr1_4:22662431-22662450 None:intergenic 45.0%
! GCATCCGTTGGTTACTATCA+CGG - chr1_4:22662482-22662501 Msa0156420:intron 45.0%
! CATCCGTTGGTTACTATCAC+GGG - chr1_4:22662483-22662502 Msa0156420:intron 45.0%
! ATCCGTTGGTTACTATCACG+GGG - chr1_4:22662484-22662503 Msa0156420:intron 45.0%
TACCCCGTGATAGTAACCAA+CGG + chr1_4:22662489-22662508 None:intergenic 45.0%
TAGAAAGATAGACGGCACGT+TGG - chr1_4:22662559-22662578 Msa0156420:intron 45.0%
AATACAATAACCCATGCCCG+AGG + chr1_4:22663008-22663027 None:intergenic 45.0%
!! TATCTCTAGGGCACTAGGTA+AGG + chr1_4:22663107-22663126 None:intergenic 45.0%
!! ACTGATATCTCTAGGGCACT+AGG + chr1_4:22663112-22663131 None:intergenic 45.0%
TTCACCATGAACCACATGGT+TGG + chr1_4:22663787-22663806 None:intergenic 45.0%
ATGGTTCACCATGAACCACA+TGG + chr1_4:22663791-22663810 None:intergenic 45.0%
GGTAGGACAACATGATCTGA+TGG + chr1_4:22663823-22663842 None:intergenic 45.0%
GTGGCGTACATCATAAGATC+TGG + chr1_4:22663844-22663863 None:intergenic 45.0%
CTTATGATGTACGCCACACA+TGG - chr1_4:22663847-22663866 Msa0156420:intron 45.0%
AATGATAGTTGAGTGCGCCA+AGG + chr1_4:22663901-22663920 None:intergenic 45.0%
ACGTTCTCTCTCCTACACAA+CGG + chr1_4:22664269-22664288 None:intergenic 45.0%
!! GTACCACTCATTTTGACCCT+TGG + chr1_4:22664364-22664383 None:intergenic 45.0%
GGTCAAAATGAGTGGTACAC+CGG - chr1_4:22664366-22664385 Msa0156420:intron 45.0%
GCCAGGAAAATTATAGAGCC+TGG - chr1_4:22664399-22664418 Msa0156420:intron 45.0%
! CCCAGGCTCTATAATTTTCC+TGG + chr1_4:22664403-22664422 None:intergenic 45.0%
CCGAGTAAGTGTATACTCAC+AGG - chr1_4:22664712-22664731 Msa0156420:intron 45.0%
TCTCACACGCAAAGAGATCT+CGG + chr1_4:22665164-22665183 None:intergenic 45.0%
GGATCAATTAAGTCCCTCAC+CGG + chr1_4:22665323-22665342 None:intergenic 45.0%
CACACAAGTGTTATCCGCTT+CGG + chr1_4:22665530-22665549 None:intergenic 45.0%
GACATAGAGTTGGGTGACAT+TGG - chr1_4:22665549-22665568 Msa0156420:intron 45.0%
TCACAATGCTTGTGACGAAG+CGG - chr1_4:22665584-22665603 Msa0156420:intron 45.0%
GGTACACCAGCAAACAATGT+TGG + chr1_4:22666044-22666063 None:intergenic 45.0%
! CATTGTTTGCTGGTGTACCA+CGG - chr1_4:22666045-22666064 Msa0156420:intron 45.0%
! ATTGTTTGCTGGTGTACCAC+GGG - chr1_4:22666046-22666065 Msa0156420:intron 45.0%
CTTTAGTCCTTGAATGGGAG+AGG - chr1_4:22666492-22666511 Msa0156420:intron 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr1_4:22666546-22666565 Msa0156420:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr1_4:22666558-22666577 Msa0156420:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr1_4:22666562-22666581 None:intergenic 45.0%
TGACGAATCCCTTCCGATTT+AGG - chr1_4:22666713-22666732 Msa0156420:intron 45.0%
GACGAATCCCTTCCGATTTA+GGG - chr1_4:22666714-22666733 Msa0156420:intron 45.0%
TGCAGGTATCAAGAAAGCAG+TGG - chr1_4:22667046-22667065 Msa0156420:CDS 45.0%
TGGCACAACTAAATCCAGTG+AGG - chr1_4:22667066-22667085 Msa0156420:CDS 45.0%
CCAAAAACTGTTCTCCTCAC+TGG + chr1_4:22667083-22667102 None:intergenic 45.0%
! CCAGTGAGGAGAACAGTTTT+TGG - chr1_4:22667080-22667099 Msa0156420:CDS 45.0%
CACACACACAACCTTTCTGA+AGG + chr1_4:22667517-22667536 None:intergenic 45.0%
CACACCATTAGGTCAAAGCA+AGG - chr1_4:22667603-22667622 Msa0156420:intron 45.0%
!! CTAGCCTTGCTTTGACCTAA+TGG + chr1_4:22667610-22667629 None:intergenic 45.0%
CATTAGGTCAAAGCAAGGCT+AGG - chr1_4:22667608-22667627 Msa0156420:intron 45.0%
ACTTGTGCCTTTGTATGCCA+AGG - chr1_4:22667704-22667723 Msa0156420:intron 45.0%
! ACCATAGCCTTGGCATACAA+AGG + chr1_4:22667714-22667733 None:intergenic 45.0%
TGTATGCCAAGGCTATGGTA+AGG - chr1_4:22667715-22667734 Msa0156420:intron 45.0%
! CCACATGTTTCTGTCAAACC+TGG + chr1_4:22668045-22668064 None:intergenic 45.0%
CCAGGTTTGACAGAAACATG+TGG - chr1_4:22668042-22668061 Msa0156420:CDS 45.0%
CCTAGCATGCACATTTCATC+TGG + chr1_4:22668087-22668106 None:intergenic 45.0%
CCAGATGAAATGTGCATGCT+AGG - chr1_4:22668084-22668103 Msa0156420:intron 45.0%
ATGTGCATGCTAGGCAATGT+TGG - chr1_4:22668093-22668112 Msa0156420:intron 45.0%
ATTCAATGAATTGCGGCTGG+AGG - chr1_4:22668128-22668147 Msa0156420:intron 45.0%
AGAGGATTGTAACCCATGTC+TGG + chr1_4:22668159-22668178 None:intergenic 45.0%
! GACATGGGTTACAATCCTCT+TGG - chr1_4:22668159-22668178 Msa0156420:intron 45.0%
ACACATATCTCACCACATGG+AGG + chr1_4:22668189-22668208 None:intergenic 45.0%
CTGACACATATCTCACCACA+TGG + chr1_4:22668192-22668211 None:intergenic 45.0%
TGTGGTGAGATATGTGTCAG+AGG - chr1_4:22668192-22668211 Msa0156420:CDS 45.0%
ATAGATGGATGGTTCCACAC+AGG - chr1_4:22668270-22668289 Msa0156420:intron 45.0%
AGACCCGCTTCCATTTGATA+TGG - chr1_4:22669396-22669415 Msa0156420:intron 45.0%
GCCGTGCTGTAATAGCATAT+TGG - chr1_4:22669958-22669977 Msa0156420:five_prime_UTR 45.0%
!!! ATATTTAAAATAAAATGAAA+AGG + chr1_4:22659409-22659428 None:intergenic 5.0%
!!! CAATTTATTTTTATTTTTTT+GGG - chr1_4:22662595-22662614 Msa0156420:intron 5.0%
!! ACTTAAAAAAAAATAAAATT+GGG + chr1_4:22665202-22665221 None:intergenic 5.0%
!! TACTTAAAAAAAAATAAAAT+TGG + chr1_4:22665203-22665222 None:intergenic 5.0%
!!! TTTAAATAATTGATTTTATT+TGG - chr1_4:22666991-22667010 Msa0156420:CDS 5.0%
!! ATAGAAATATATTAAAATTA+TGG - chr1_4:22667348-22667367 Msa0156420:intron 5.0%
TCCCAAGCAGAGGTGAAATC+AGG + chr1_4:22659815-22659834 None:intergenic 50.0%
ACATCCTCAAAACCGCATGC+TGG - chr1_4:22659946-22659965 Msa0156420:intron 50.0%
CATCCTCAAAACCGCATGCT+GGG - chr1_4:22659947-22659966 Msa0156420:intron 50.0%
! TTTTACGCCATCCCAGCATG+CGG + chr1_4:22659961-22659980 None:intergenic 50.0%
GTCCCTCTCTATGACACACT+TGG - chr1_4:22660705-22660724 Msa0156420:intron 50.0%
GGCTACACTTACAGCCATAG+TGG - chr1_4:22661160-22661179 Msa0156420:CDS 50.0%
AAAGATGAGGCCACAAACGC+TGG - chr1_4:22661209-22661228 Msa0156420:intron 50.0%
! CGGCCAGGCTGAGATTTTAT+TGG + chr1_4:22661374-22661393 None:intergenic 50.0%
TCGCCTATACCACTCCTTTC+AGG + chr1_4:22661616-22661635 None:intergenic 50.0%
GATGTGAGCTAAAGGGAGGA+AGG + chr1_4:22662423-22662442 None:intergenic 50.0%
CAAGGATGTGAGCTAAAGGG+AGG + chr1_4:22662427-22662446 None:intergenic 50.0%
AACCAACGGATGCACCGTTA+CGG + chr1_4:22662475-22662494 None:intergenic 50.0%
GAAAATGCTAACCGGTGCCT+CGG - chr1_4:22662988-22663007 Msa0156420:intron 50.0%
AAAATGCTAACCGGTGCCTC+GGG - chr1_4:22662989-22663008 Msa0156420:intron 50.0%
ACCACCAACCATGTGGTTCA+TGG - chr1_4:22663780-22663799 Msa0156420:intron 50.0%
ACCATGAACCACATGGTTGG+TGG + chr1_4:22663784-22663803 None:intergenic 50.0%
ATAGTTGAGTGCGCCAAGGA+AGG + chr1_4:22663897-22663916 None:intergenic 50.0%
GAAGCCATTGTCCGTTGTGT+AGG - chr1_4:22664255-22664274 Msa0156420:intron 50.0%
CTCTCCTACACAACGGACAA+TGG + chr1_4:22664262-22664281 None:intergenic 50.0%
GTTGTGTAGGAGAGAGAACG+TGG - chr1_4:22664268-22664287 Msa0156420:intron 50.0%
GAGAGAACGTGGATGCATAG+AGG - chr1_4:22664279-22664298 Msa0156420:intron 50.0%
CACGCAAAGAGATCTCGGAA+AGG + chr1_4:22665159-22665178 None:intergenic 50.0%
TACGAAAAGGGCTATTGGGC+TGG - chr1_4:22665221-22665240 Msa0156420:intron 50.0%
GCTGGACTTGGCACAAAAAG+AGG - chr1_4:22665239-22665258 Msa0156420:intron 50.0%
!! ATGGGTGGATTCTAGGGTGA+GGG + chr1_4:22665344-22665363 None:intergenic 50.0%
!! TATGGGTGGATTCTAGGGTG+AGG + chr1_4:22665345-22665364 None:intergenic 50.0%
AGGGTTGTGACTATCCGAAG+CGG - chr1_4:22665513-22665532 Msa0156420:intron 50.0%
! TGTGCGCCTAACGCATGTTT+TGG + chr1_4:22665796-22665815 None:intergenic 50.0%
GAAGGATCTGAATGCGTTGC+TGG - chr1_4:22665998-22666017 Msa0156420:intron 50.0%
GACGAATCCTCTCCCATTCA+AGG + chr1_4:22666502-22666521 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr1_4:22666557-22666576 Msa0156420:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr1_4:22666563-22666582 None:intergenic 50.0%
TAGGTCAAAGCAAGGCTAGG+CGG - chr1_4:22667611-22667630 Msa0156420:intron 50.0%
GCCTTTGTATGCCAAGGCTA+TGG - chr1_4:22667710-22667729 Msa0156420:intron 50.0%
CAAGGTCCTTACCATAGCCT+TGG + chr1_4:22667724-22667743 None:intergenic 50.0%
CAAGGCTATGGTAAGGACCT+TGG - chr1_4:22667722-22667741 Msa0156420:intron 50.0%
CTGGAGGAAGTTCCAGACAT+GGG - chr1_4:22668144-22668163 Msa0156420:intron 50.0%
GCATTTCTCCAATGTCCCCT+AGG + chr1_4:22668389-22668408 None:intergenic 50.0%
! CATCCCAGCATGCGGTTTTG+AGG + chr1_4:22659953-22659972 None:intergenic 55.0%
CTCAAAACCGCATGCTGGGA+TGG - chr1_4:22659951-22659970 Msa0156420:intron 55.0%
TCAGCCTGGCCGGAAATCAT+GGG - chr1_4:22661382-22661401 Msa0156420:intron 55.0%
ACCCACCACCCCATGATTTC+CGG + chr1_4:22661394-22661413 None:intergenic 55.0%
TTCCGTAACGGTGCATCCGT+TGG - chr1_4:22662470-22662489 Msa0156420:intron 55.0%
AGGGTGAACCACCAACCATG+TGG - chr1_4:22663773-22663792 Msa0156420:intron 55.0%
AATGAGTGGTACACCGGCAG+TGG - chr1_4:22664372-22664391 Msa0156420:intron 55.0%
! AAGGGCTATTGGGCTGGACT+TGG - chr1_4:22665227-22665246 Msa0156420:intron 55.0%
AAAAGAGGAGCAGCTGAGCC+CGG - chr1_4:22665254-22665273 Msa0156420:intron 55.0%
AAGTCCCTCACCGGTGTACA+GGG + chr1_4:22665314-22665333 None:intergenic 55.0%
TAAGTCCCTCACCGGTGTAC+AGG + chr1_4:22665315-22665334 None:intergenic 55.0%
GGGAGCTTCGGATAGCACTT+GGG + chr1_4:22665753-22665772 None:intergenic 55.0%
AGGGAGCTTCGGATAGCACT+TGG + chr1_4:22665754-22665773 None:intergenic 55.0%
ACATGCGTTAGGCGCACATG+TGG - chr1_4:22665798-22665817 Msa0156420:intron 55.0%
GGATCTGAATGCGTTGCTGG+AGG - chr1_4:22666001-22666020 Msa0156420:intron 55.0%
GCTGGAGGAAGTTCCAGACA+TGG - chr1_4:22668143-22668162 Msa0156420:intron 55.0%
CCACATGGAGGAGTTCCAAG+AGG + chr1_4:22668177-22668196 None:intergenic 55.0%
CCTCTTGGAACTCCTCCATG+TGG - chr1_4:22668174-22668193 Msa0156420:intron 55.0%
CAGCACGGCACCATACTAGT+AGG + chr1_4:22669947-22669966 None:intergenic 55.0%
CTCAGCCTGGCCGGAAATCA+TGG - chr1_4:22661381-22661400 Msa0156420:intron 60.0%
CAGCCTGGCCGGAAATCATG+GGG - chr1_4:22661383-22661402 Msa0156420:intron 60.0%
GCCGGAAATCATGGGGTGGT+GGG - chr1_4:22661390-22661409 Msa0156420:intron 60.0%
ATAACCCATGCCCGAGGCAC+CGG + chr1_4:22663002-22663021 None:intergenic 60.0%
AAAGAGGAGCAGCTGAGCCC+GGG - chr1_4:22665255-22665274 Msa0156420:intron 60.0%
AGTCCCTCACCGGTGTACAG+GGG + chr1_4:22665313-22665332 None:intergenic 60.0%
GTTAGGCGCACATGTGGTGC+CGG - chr1_4:22665804-22665823 Msa0156420:intron 60.0%
CCACCCCATGATTTCCGGCC+AGG + chr1_4:22661389-22661408 None:intergenic 65.0%
CCTGGCCGGAAATCATGGGG+TGG - chr1_4:22661386-22661405 Msa0156420:intron 65.0%
GGCCGGAAATCATGGGGTGG+TGG - chr1_4:22661389-22661408 Msa0156420:intron 65.0%
CTAACCGGTGCCTCGGGCAT+GGG - chr1_4:22662995-22663014 Msa0156420:intron 65.0%
GAGTGGTACACCGGCAGTGG+CGG - chr1_4:22664375-22664394 Msa0156420:intron 65.0%
TTTCCTGGCTCCGCCACTGC+CGG + chr1_4:22664388-22664407 None:intergenic 65.0%
! AGCTAGCCTGGGCACTAGCC+CGG + chr1_4:22665276-22665295 None:intergenic 65.0%
! GGCTAGTGCCCAGGCTAGCT+GGG - chr1_4:22665276-22665295 Msa0156420:intron 65.0%
! GCTAGTGCCCAGGCTAGCTG+GGG - chr1_4:22665277-22665296 Msa0156420:intron 65.0%
! CTAGTGCCCAGGCTAGCTGG+GGG - chr1_4:22665278-22665297 Msa0156420:intron 65.0%
! TAGTGCCCAGGCTAGCTGGG+GGG - chr1_4:22665279-22665298 Msa0156420:intron 65.0%
! TGACACCCCCCAGCTAGCCT+GGG + chr1_4:22665287-22665306 None:intergenic 65.0%
GTGTCACCGCCCCTGTACAC+CGG - chr1_4:22665301-22665320 Msa0156420:intron 65.0%
!! GCACATGTGGTGCCGGTCCA+GGG - chr1_4:22665811-22665830 Msa0156420:intron 65.0%
GCTAACCGGTGCCTCGGGCA+TGG - chr1_4:22662994-22663013 Msa0156420:intron 70.0%
! GCTAGCCTGGGCACTAGCCC+GGG + chr1_4:22665275-22665294 None:intergenic 70.0%
! GGGCTAGTGCCCAGGCTAGC+TGG - chr1_4:22665275-22665294 Msa0156420:intron 70.0%
GTGACACCCCCCAGCTAGCC+TGG + chr1_4:22665288-22665307 None:intergenic 70.0%
ACCGCCCCTGTACACCGGTG+AGG - chr1_4:22665306-22665325 Msa0156420:intron 70.0%
CCCTCACCGGTGTACAGGGG+CGG + chr1_4:22665310-22665329 None:intergenic 70.0%
CCGCCCCTGTACACCGGTGA+GGG - chr1_4:22665307-22665326 Msa0156420:intron 70.0%
!! CGCACATGTGGTGCCGGTCC+AGG - chr1_4:22665810-22665829 Msa0156420:intron 70.0%
! ACACCGGCAGTGGCGGAGCC+AGG - chr1_4:22664382-22664401 Msa0156420:intron 75.0%
!! CTGAGCCCGGGCTAGTGCCC+AGG - chr1_4:22665267-22665286 Msa0156420:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 22659210 22670036 22659210 ID=Msa0156420;Name=Msa0156420
chr1_4 mRNA 22659210 22670036 22659210 ID=Msa0156420-mRNA-1;Parent=Msa0156420;Name=Msa0156420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=167|0.83|0.89|0.94|0.94|0.89|19|302|650
chr1_4 exon 22659210 22659565 22659210 ID=Msa0156420-mRNA-1:exon:8052;Parent=Msa0156420-mRNA-1
chr1_4 exon 22659766 22659885 22659766 ID=Msa0156420-mRNA-1:exon:8051;Parent=Msa0156420-mRNA-1
chr1_4 exon 22660425 22660607 22660425 ID=Msa0156420-mRNA-1:exon:8050;Parent=Msa0156420-mRNA-1
chr1_4 exon 22660716 22660855 22660716 ID=Msa0156420-mRNA-1:exon:8049;Parent=Msa0156420-mRNA-1
chr1_4 exon 22660955 22661200 22660955 ID=Msa0156420-mRNA-1:exon:8048;Parent=Msa0156420-mRNA-1
chr1_4 exon 22661515 22661632 22661515 ID=Msa0156420-mRNA-1:exon:8047;Parent=Msa0156420-mRNA-1
chr1_4 exon 22663152 22663244 22663152 ID=Msa0156420-mRNA-1:exon:8046;Parent=Msa0156420-mRNA-1
chr1_4 exon 22663924 22664025 22663924 ID=Msa0156420-mRNA-1:exon:8045;Parent=Msa0156420-mRNA-1
chr1_4 exon 22666741 22666851 22666741 ID=Msa0156420-mRNA-1:exon:8044;Parent=Msa0156420-mRNA-1
chr1_4 exon 22666959 22667126 22666959 ID=Msa0156420-mRNA-1:exon:8043;Parent=Msa0156420-mRNA-1
chr1_4 exon 22667978 22668072 22667978 ID=Msa0156420-mRNA-1:exon:8042;Parent=Msa0156420-mRNA-1
chr1_4 exon 22668178 22668217 22668178 ID=Msa0156420-mRNA-1:exon:8041;Parent=Msa0156420-mRNA-1
chr1_4 exon 22668357 22668433 22668357 ID=Msa0156420-mRNA-1:exon:8040;Parent=Msa0156420-mRNA-1
chr1_4 exon 22668520 22668568 22668520 ID=Msa0156420-mRNA-1:exon:8039;Parent=Msa0156420-mRNA-1
chr1_4 exon 22668678 22668734 22668678 ID=Msa0156420-mRNA-1:exon:8038;Parent=Msa0156420-mRNA-1
chr1_4 exon 22669040 22669129 22669040 ID=Msa0156420-mRNA-1:exon:8037;Parent=Msa0156420-mRNA-1
chr1_4 exon 22669252 22669315 22669252 ID=Msa0156420-mRNA-1:exon:8036;Parent=Msa0156420-mRNA-1
chr1_4 exon 22669403 22669567 22669403 ID=Msa0156420-mRNA-1:exon:8035;Parent=Msa0156420-mRNA-1
chr1_4 exon 22669889 22670036 22669889 ID=Msa0156420-mRNA-1:exon:8034;Parent=Msa0156420-mRNA-1
chr1_4 five_prime_UTR 22669889 22670036 22669889 ID=Msa0156420-mRNA-1:five_prime_utr;Parent=Msa0156420-mRNA-1
chr1_4 five_prime_UTR 22669549 22669567 22669549 ID=Msa0156420-mRNA-1:five_prime_utr;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22669403 22669548 22669403 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22669252 22669315 22669252 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22669040 22669129 22669040 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22668678 22668734 22668678 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22668520 22668568 22668520 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22668357 22668433 22668357 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22668178 22668217 22668178 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22667978 22668072 22667978 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22666959 22667126 22666959 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22666741 22666851 22666741 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22663924 22664025 22663924 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22663152 22663244 22663152 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22661515 22661632 22661515 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22660955 22661200 22660955 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22660716 22660855 22660716 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22660425 22660607 22660425 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22659766 22659885 22659766 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 CDS 22659512 22659565 22659512 ID=Msa0156420-mRNA-1:cds;Parent=Msa0156420-mRNA-1
chr1_4 three_prime_UTR 22659210 22659511 22659210 ID=Msa0156420-mRNA-1:three_prime_utr;Parent=Msa0156420-mRNA-1
Gene Sequence

>Msa0156420

ATGAAGAGCTTTTCAATTAAGGTTGAGAAAGGAAAGGAAGGAAAAAATGGCATGCTTTCTGTTGGTCCTGTTTACCGTAACCTTCTCTCCAAAAATGAATTCCCTCCAATGGATCCTGATTTCACCTCTGCTTGGGATATTTTCAGTACGTCTGTCAAAAAACATCCTCAAAACCGCATGCTGGGATGGCGTAAAATTGTTGATGGAAAGATAGGACCATATGTTTGGAAGACATACAAGGAAGCTTATGATGAAGTTTTACAAATTGCTTCTGCTTTAAAAGCATGTGGTGCTAAATCTGGTTCAAAAATTGGAATTTATGGATCTAACTGTCCGCAATGGATTATCGCAATGGAGGCTTGTTCTGCACAAAACTTTATTTGTGTCCCTCTCTATGACACACTTGGTTCTGGTGCTATAAATTTTATCATAGATCATGCAGAAATAGATTATGTTTTTGTTCAAGATAAGAAGGTTAAAGAGCTTTTGAATGCTGACTGTAAATCCTCTAAGAGATTGAAAGCCATAGTGGGCTTCACTTCATTAACTGAGGAAGAGAAAGATGAGGCCACAAACGCTGGAATTAAACCATATACATGGAATCAATTCGTACAAAAGGGAAAAGAAAACCCGTCAAGTATTTGTCCTCCTTTGGCTCATGACATATGCACAATAATGTATACAAGTGGAACTAGTGGAGATCCTAAAGGTGTTGTTTTAACACATGAAAACGTACTAGCTTTAGTAAGAGGAATGGATCTTTTCATGGAACAATTTGAGGACAAGATGACTGTGGATGATGTGTATTTATCCTTCCTCCCTTTAGCTCACATCCTTGATCGTTGTATTGAAGAATATTTTTTCCGTAACGGTGCATCCGTTGGTTACTATCACGGGTACGAAAAGGGCTATTGGGCTGGACTTGGCACAAAAAGAGGAGCAGCTGAGCCCGGGCTAGTGCCCAGGCTAGCTGGGGGGTGTCACCGCCCCTGTACACCGGATCTGAATGCGTTGCTGGAGGATTTAAGTGAGTTAAAGCCAACATTGTTTGCTGGTGTACCACGGGTTTTTGAAAAAGTTTATGAAGGCAAGGTCAAAGCAAGGCTAGGCGGACGTGTTAGACTAATAATATCTGGAGGTGCAGCCTTAAGCTCTGAGATTGAAGAATTCTTGCGTGTCACTACTTGTGCCTTTGTATGCCAAGGCTATGGTTTGACAGAAACATGTGGACCAACTACTCTTACATTTCCAGATGAAATGTGCATGCTAGGCAATGTTGGTGTTGTAACTGTATTCAATGAATTGCGGCTGGAGGAAGTTCCAGACATGGGTTACAATCCTCTTGGAACTCCTCCATGTGGTGAGATATGTGTCAGAGGCAAAAGTGTTTTCATTGGTTACCATAAAAATCCTGAGTTAACAAAAGAAGCCATAATAGATGGATGGTTCCACACAGGGGACATTGGAGAAATGCTTCCTAATGGTATTATGAGGATTATTGACAGGAAGAAGAATCTTGTTAAGCTTTCTCAAGGAGAGTATATAGCACTTGAGTATCTTGAAAATGTTTATACAATCACTCCAATAGTTGAAGATATTTGGGTATATGGGAATAGCTTCAAGTCAATACTGGTTGCAGTAGTAGTTCCAAATGAAGATGTTGCTAATAAGTGGGCATATGCAAATGGTCACATATCTTCCTTCTCCAAACTATGTTCGCTTGACCAATTGAAGAGATATGTGCTATCTGAGCTCAAATCTACAGCTGTGAGAAACAAGTTGAAGGGATTTGAACATATCAAAGGCGTAATATTAGACCCGCTTCCATTTGATATGGAAAGAGACTTGGTAACTGCAACATTGAAAAAGAAAAGGAACAACATGATCAAGTATTATAAGGTTGAGATAGACGAACTATACAAAAGTTTGACTGGAGATAAGCCTAAATTTTGA
Protein sequence

>Msa0156420

MKSFSIKVEKGKEGKNGMLSVGPVYRNLLSKNEFPPMDPDFTSAWDIFSTSVKKHPQNRMLGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEACSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFTSLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSICPPLAHDICTIMYTSGTSGDPKGVVLTHENVLALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHGYEKGYWAGLGTKRGAAEPGLVPRLAGGCHRPCTPDLNALLEDLSELKPTLFAGVPRVFEKVYEGKVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYGLTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVFIGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIMRIIDRKKNLVKLSQGEYIALEYLENVYTITPIVEDIWVYGNSFKSILVAVVVPNEDVANKWAYANGHISSFSKLCSLDQLKRYVLSELKSTAVRNKLKGFEHIKGVILDPLPFDMERDLVTATLKKKRNNMIKYYKVEIDELYKSLTGDKPKF*