Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128010 | XP_039685731.1 | 88.889 | 63 | 7 | 0 | 459 | 521 | 622 | 684 | 6.75e-24 | 118 |
| Msa0128010 | XP_039685731.1 | 95.258 | 485 | 3 | 1 | 1 | 465 | 83 | 567 | 0.0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128010 | sp|O22898|LACS1_ARATH | 64.124 | 485 | 154 | 1 | 1 | 465 | 61 | 545 | 0.0 | 676 |
| Msa0128010 | sp|O22898|LACS1_ARATH | 59.259 | 54 | 22 | 0 | 465 | 518 | 606 | 659 | 1.55e-12 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128010 | A0A396JRT1 | 88.889 | 63 | 7 | 0 | 459 | 521 | 601 | 663 | 3.00e-24 | 118 |
| Msa0128010 | A0A396JRT1 | 95.062 | 486 | 3 | 2 | 1 | 465 | 61 | 546 | 0.0 | 945 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081740 | Msa0128010 | 0.824235 | 9.010154e-54 | -8.615850e-47 |
| Msa0127960 | Msa0128010 | 0.961267 | 1.666006e-119 | -8.615850e-47 |
| Msa0128010 | Msa0156420 | 0.888501 | 5.581105e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128010 | MtrunA17_Chr1g0194371 | 95.062 | 486 | 3 | 2 | 1 | 465 | 61 | 546 | 0.0 | 945 |
| Msa0128010 | MtrunA17_Chr1g0194371 | 88.889 | 63 | 7 | 0 | 459 | 521 | 601 | 663 | 5.77e-28 | 118 |
| Msa0128010 | MtrunA17_Chr7g0270221 | 59.968 | 622 | 108 | 6 | 1 | 520 | 61 | 643 | 0.0 | 719 |
| Msa0128010 | MtrunA17_Chr5g0396691 | 45.424 | 601 | 245 | 5 | 1 | 520 | 63 | 661 | 2.11e-179 | 520 |
| Msa0128010 | MtrunA17_Chr8g0388081 | 45.118 | 594 | 245 | 6 | 1 | 513 | 2 | 595 | 6.30e-179 | 516 |
| Msa0128010 | MtrunA17_Chr5g0396711 | 44.500 | 600 | 250 | 6 | 1 | 519 | 63 | 660 | 8.97e-171 | 497 |
| Msa0128010 | MtrunA17_Chr1g0162621 | 41.876 | 597 | 265 | 4 | 1 | 516 | 63 | 658 | 1.11e-160 | 471 |
| Msa0128010 | MtrunA17_Chr4g0034181 | 44.969 | 487 | 242 | 4 | 1 | 465 | 62 | 544 | 1.75e-147 | 437 |
| Msa0128010 | MtrunA17_Chr4g0034181 | 47.826 | 69 | 36 | 0 | 448 | 516 | 588 | 656 | 1.30e-11 | 67.4 |
| Msa0128010 | MtrunA17_Chr1g0205711 | 39.167 | 480 | 256 | 9 | 1 | 456 | 100 | 567 | 6.34e-100 | 316 |
| Msa0128010 | MtrunA17_Chr1g0160041 | 33.199 | 497 | 280 | 12 | 10 | 465 | 101 | 586 | 2.01e-74 | 249 |
| Msa0128010 | MtrunA17_Chr3g0124631 | 31.881 | 505 | 292 | 11 | 4 | 465 | 93 | 588 | 2.35e-70 | 238 |
| Msa0128010 | MtrunA17_Chr3g0120731 | 30.081 | 492 | 293 | 11 | 4 | 453 | 124 | 606 | 5.21e-61 | 213 |
| Msa0128010 | MtrunA17_Chr3g0121951 | 24.451 | 638 | 335 | 19 | 6 | 512 | 94 | 715 | 5.61e-29 | 121 |
| Msa0128010 | MtrunA17_Chr3g0121931 | 25.326 | 537 | 309 | 16 | 6 | 465 | 96 | 617 | 7.72e-29 | 120 |
| Msa0128010 | MtrunA17_Chr8g0377991 | 24.349 | 538 | 314 | 17 | 6 | 465 | 98 | 620 | 3.92e-27 | 115 |
| Msa0128010 | MtrunA17_Chr5g0396331 | 23.913 | 460 | 296 | 13 | 18 | 462 | 41 | 461 | 1.66e-25 | 110 |
| Msa0128010 | MtrunA17_Chr5g0395431 | 26.824 | 466 | 270 | 18 | 18 | 464 | 98 | 511 | 1.48e-24 | 107 |
| Msa0128010 | MtrunA17_Chr1g0180541 | 29.032 | 310 | 186 | 11 | 161 | 464 | 191 | 472 | 4.64e-24 | 105 |
| Msa0128010 | MtrunA17_Chr4g0072561 | 26.403 | 481 | 274 | 19 | 6 | 464 | 50 | 472 | 4.32e-23 | 102 |
| Msa0128010 | MtrunA17_Chr2g0327341 | 29.904 | 311 | 178 | 12 | 161 | 464 | 186 | 463 | 1.64e-22 | 100 |
| Msa0128010 | MtrunA17_Chr1g0157401 | 26.299 | 308 | 197 | 9 | 160 | 464 | 204 | 484 | 1.14e-21 | 98.6 |
| Msa0128010 | MtrunA17_Chr1g0180551 | 28.485 | 330 | 183 | 12 | 161 | 478 | 264 | 552 | 1.95e-21 | 98.2 |
| Msa0128010 | MtrunA17_Chr4g0028411 | 28.296 | 311 | 183 | 12 | 161 | 464 | 189 | 466 | 2.12e-21 | 97.4 |
| Msa0128010 | MtrunA17_Chr3g0109731 | 24.294 | 531 | 325 | 19 | 18 | 521 | 41 | 521 | 2.60e-21 | 97.4 |
| Msa0128010 | MtrunA17_Chr4g0000461 | 26.809 | 470 | 265 | 18 | 18 | 465 | 54 | 466 | 4.31e-21 | 96.7 |
| Msa0128010 | MtrunA17_Chr4g0039791 | 25.792 | 442 | 288 | 12 | 26 | 464 | 81 | 485 | 1.02e-20 | 95.5 |
| Msa0128010 | MtrunA17_Chr5g0396311 | 22.609 | 460 | 304 | 13 | 18 | 462 | 41 | 463 | 7.90e-20 | 92.8 |
| Msa0128010 | MtrunA17_Chr8g0370701 | 23.593 | 462 | 297 | 13 | 19 | 462 | 84 | 507 | 3.29e-19 | 90.9 |
| Msa0128010 | MtrunA17_Chr8g0370731 | 25.508 | 443 | 264 | 16 | 43 | 462 | 19 | 418 | 6.00e-19 | 89.7 |
| Msa0128010 | MtrunA17_Chr4g0068151 | 24.444 | 540 | 325 | 18 | 18 | 516 | 47 | 544 | 2.71e-18 | 88.2 |
| Msa0128010 | MtrunA17_Chr5g0406681 | 23.491 | 464 | 302 | 14 | 14 | 462 | 65 | 490 | 2.84e-18 | 88.2 |
| Msa0128010 | MtrunA17_Chr1g0197391 | 29.524 | 315 | 175 | 12 | 161 | 464 | 212 | 490 | 3.41e-18 | 87.8 |
| Msa0128010 | MtrunA17_Chr5g0409791 | 27.687 | 307 | 194 | 9 | 161 | 464 | 211 | 492 | 9.85e-18 | 86.3 |
| Msa0128010 | MtrunA17_Chr1g0186071 | 25.309 | 324 | 193 | 11 | 152 | 464 | 195 | 480 | 8.38e-16 | 80.1 |
| Msa0128010 | MtrunA17_Chr2g0334131 | 35.329 | 167 | 97 | 8 | 305 | 464 | 45 | 207 | 9.73e-16 | 77.8 |
| Msa0128010 | MtrunA17_Chr3g0116271 | 27.796 | 313 | 186 | 13 | 161 | 464 | 201 | 482 | 4.86e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128010 | AT2G47240.1 | 64.124 | 485 | 154 | 1 | 1 | 465 | 61 | 545 | 0.0 | 676 |
| Msa0128010 | AT2G47240.1 | 59.259 | 54 | 22 | 0 | 465 | 518 | 606 | 659 | 1.57e-13 | 73.6 |
| Msa0128010 | AT2G47240.4 | 64.124 | 485 | 154 | 1 | 1 | 465 | 2 | 486 | 0.0 | 676 |
| Msa0128010 | AT2G47240.4 | 59.259 | 54 | 22 | 0 | 465 | 518 | 547 | 600 | 1.33e-13 | 73.9 |
| Msa0128010 | AT2G47240.2 | 64.124 | 485 | 154 | 1 | 1 | 465 | 61 | 545 | 0.0 | 676 |
| Msa0128010 | AT2G47240.2 | 59.259 | 54 | 22 | 0 | 465 | 518 | 606 | 659 | 1.57e-13 | 73.6 |
| Msa0128010 | AT2G47240.3 | 64.124 | 485 | 154 | 1 | 1 | 465 | 61 | 545 | 0.0 | 676 |
| Msa0128010 | AT2G47240.3 | 59.259 | 54 | 22 | 0 | 465 | 518 | 606 | 659 | 1.57e-13 | 73.6 |
| Msa0128010 | AT4G11030.1 | 45.887 | 547 | 269 | 5 | 1 | 520 | 64 | 610 | 1.29e-164 | 482 |
| Msa0128010 | AT4G23850.1 | 45.972 | 509 | 251 | 2 | 1 | 485 | 64 | 572 | 1.07e-163 | 480 |
| Msa0128010 | AT4G23850.1 | 59.615 | 52 | 21 | 0 | 465 | 516 | 609 | 660 | 7.71e-13 | 71.6 |
| Msa0128010 | AT1G64400.1 | 47.216 | 485 | 236 | 1 | 1 | 465 | 64 | 548 | 8.94e-163 | 478 |
| Msa0128010 | AT1G64400.1 | 66.667 | 48 | 16 | 0 | 465 | 512 | 609 | 656 | 4.29e-12 | 69.3 |
| Msa0128010 | AT1G49430.1 | 45.062 | 486 | 246 | 2 | 1 | 465 | 64 | 549 | 5.43e-149 | 442 |
| Msa0128010 | AT1G49430.2 | 43.736 | 439 | 226 | 2 | 1 | 418 | 64 | 502 | 7.08e-129 | 385 |
| Msa0128010 | AT3G05970.1 | 40.833 | 480 | 250 | 8 | 1 | 457 | 103 | 571 | 3.19e-100 | 317 |
| Msa0128010 | AT5G27600.1 | 39.917 | 481 | 253 | 9 | 1 | 457 | 103 | 571 | 7.93e-100 | 316 |
| Msa0128010 | AT1G77590.1 | 31.528 | 517 | 291 | 13 | 1 | 465 | 77 | 582 | 4.71e-72 | 243 |
| Msa0128010 | AT1G77590.2 | 32.063 | 446 | 254 | 11 | 58 | 465 | 2 | 436 | 1.16e-62 | 214 |
| Msa0128010 | AT2G04350.2 | 29.167 | 504 | 306 | 11 | 4 | 465 | 117 | 611 | 1.01e-60 | 213 |
| Msa0128010 | AT2G04350.1 | 29.167 | 504 | 306 | 11 | 4 | 465 | 117 | 611 | 1.01e-60 | 213 |
| Msa0128010 | AT4G14070.1 | 23.680 | 625 | 344 | 18 | 6 | 511 | 116 | 726 | 1.07e-31 | 130 |
| Msa0128010 | AT3G23790.1 | 26.408 | 515 | 292 | 16 | 6 | 447 | 100 | 600 | 2.06e-31 | 129 |
| Msa0128010 | AT1G21530.2 | 25.325 | 462 | 294 | 14 | 18 | 464 | 42 | 467 | 4.22e-26 | 112 |
| Msa0128010 | AT1G66120.1 | 25.882 | 510 | 300 | 16 | 18 | 500 | 41 | 499 | 1.17e-25 | 111 |
| Msa0128010 | AT1G21530.1 | 25.325 | 462 | 292 | 15 | 18 | 464 | 42 | 465 | 2.98e-24 | 106 |
| Msa0128010 | AT2G17650.1 | 25.847 | 472 | 273 | 14 | 18 | 455 | 88 | 516 | 4.99e-24 | 106 |
| Msa0128010 | AT5G16340.1 | 24.953 | 537 | 327 | 19 | 18 | 521 | 42 | 535 | 1.17e-22 | 102 |
| Msa0128010 | AT1G77240.1 | 24.628 | 471 | 288 | 18 | 18 | 464 | 41 | 468 | 1.63e-22 | 101 |
| Msa0128010 | AT1G65880.1 | 24.153 | 472 | 287 | 14 | 18 | 462 | 41 | 468 | 2.20e-22 | 101 |
| Msa0128010 | AT1G65890.1 | 24.788 | 472 | 270 | 17 | 18 | 455 | 41 | 461 | 2.33e-22 | 101 |
| Msa0128010 | AT5G16370.1 | 24.906 | 534 | 331 | 19 | 18 | 521 | 42 | 535 | 3.79e-22 | 100 |
| Msa0128010 | AT1G65060.1 | 28.027 | 446 | 243 | 19 | 18 | 441 | 77 | 466 | 5.87e-22 | 99.8 |
| Msa0128010 | AT1G65060.2 | 28.027 | 446 | 243 | 19 | 18 | 441 | 77 | 466 | 6.75e-22 | 99.4 |
| Msa0128010 | AT4G19010.1 | 28.617 | 311 | 186 | 11 | 161 | 464 | 205 | 486 | 1.73e-21 | 98.6 |
| Msa0128010 | AT3G21230.3 | 25.156 | 481 | 285 | 14 | 6 | 464 | 65 | 492 | 1.93e-21 | 98.2 |
| Msa0128010 | AT1G20560.1 | 23.871 | 465 | 296 | 13 | 18 | 462 | 43 | 469 | 2.13e-21 | 98.2 |
| Msa0128010 | AT3G21230.2 | 25.941 | 478 | 285 | 15 | 6 | 464 | 65 | 492 | 2.24e-21 | 97.8 |
| Msa0128010 | AT3G21230.1 | 28.409 | 352 | 200 | 10 | 117 | 464 | 189 | 492 | 2.89e-21 | 97.8 |
| Msa0128010 | AT3G16910.1 | 25.641 | 468 | 289 | 16 | 18 | 462 | 49 | 480 | 6.34e-21 | 96.7 |
| Msa0128010 | AT1G51680.1 | 27.101 | 476 | 285 | 19 | 6 | 465 | 57 | 486 | 1.16e-19 | 92.8 |
| Msa0128010 | AT1G51680.2 | 27.101 | 476 | 285 | 19 | 6 | 465 | 57 | 486 | 1.18e-19 | 92.4 |
| Msa0128010 | AT1G51680.3 | 27.101 | 476 | 285 | 19 | 6 | 465 | 57 | 486 | 1.93e-19 | 92.0 |
| Msa0128010 | AT4G05160.1 | 30.323 | 310 | 178 | 12 | 161 | 464 | 191 | 468 | 8.94e-19 | 90.1 |
| Msa0128010 | AT1G20560.2 | 27.616 | 344 | 187 | 12 | 140 | 462 | 89 | 391 | 1.68e-17 | 85.5 |
| Msa0128010 | AT5G63380.1 | 27.937 | 315 | 179 | 13 | 161 | 464 | 205 | 482 | 1.96e-17 | 85.9 |
| Msa0128010 | AT1G75960.1 | 24.583 | 480 | 298 | 17 | 5 | 464 | 32 | 467 | 2.14e-17 | 85.5 |
| Msa0128010 | AT1G20490.2 | 27.132 | 258 | 156 | 10 | 161 | 415 | 200 | 428 | 4.14e-14 | 75.1 |
| Msa0128010 | AT1G20490.1 | 27.132 | 258 | 156 | 10 | 161 | 415 | 200 | 428 | 4.14e-14 | 75.1 |
| Msa0128010 | AT5G38120.1 | 26.761 | 284 | 172 | 11 | 161 | 440 | 200 | 451 | 1.07e-13 | 73.9 |
| Msa0128010 | AT5G38120.4 | 26.761 | 284 | 172 | 11 | 161 | 440 | 200 | 451 | 1.29e-13 | 73.6 |
| Msa0128010 | AT5G38120.2 | 26.761 | 284 | 172 | 11 | 161 | 440 | 200 | 451 | 1.29e-13 | 73.6 |
| Msa0128010 | AT5G38120.3 | 26.761 | 284 | 172 | 11 | 161 | 440 | 200 | 451 | 1.49e-13 | 73.6 |
| Msa0128010 | AT1G62940.1 | 28.084 | 381 | 218 | 17 | 158 | 516 | 179 | 525 | 3.14e-12 | 69.3 |
| Msa0128010 | AT2G47245.1 | 74.286 | 35 | 9 | 0 | 1 | 35 | 94 | 128 | 2.47e-11 | 61.6 |
| Msa0128010 | AT1G68270.1 | 32.759 | 174 | 88 | 8 | 308 | 462 | 275 | 438 | 4.08e-11 | 65.9 |
Find 115 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAATTGATTCCATGTATA+TGG | 0.245820 | 1_3:+57637733 | None:intergenic |
| AGGTAGAAACCTCAAAATTT+AGG | 0.261202 | 1_3:+57631747 | None:intergenic |
| GAGAAAATGAATTGCTCTTT+AGG | 0.284055 | 1_3:-57631474 | Msa0128010:three_prime_UTR |
| CATACTATTGGTGTTATGTT+TGG | 0.284855 | 1_3:-57631551 | Msa0128010:three_prime_UTR |
| ATACTTACATCTTCAACTAT+TGG | 0.314643 | 1_3:+57632954 | None:intergenic |
| ATTACCTTTCAATCTCTTAG+AGG | 0.321844 | 1_3:+57637922 | None:intergenic |
| AGACCCGCTTCCATTTGATA+TGG | 0.328595 | 1_3:-57632074 | Msa0128010:CDS |
| GTGGAACCATCCATCTATTA+TGG | 0.334919 | 1_3:+57633205 | None:intergenic |
| TTCTTCAATCTCAGAGCTTA+AGG | 0.341131 | 1_3:+57633765 | None:intergenic |
| TGTGTTAAAACAACACCTTT+AGG | 0.342951 | 1_3:+57636993 | None:intergenic |
| CAACATGATCAAGTATTATA+AGG | 0.357038 | 1_3:-57632011 | Msa0128010:intron |
| GTCAAGTATTTGTCCTCCTT+TGG | 0.368480 | 1_3:-57637063 | Msa0128010:CDS |
| TAAGTACAACAAGCAACTTT+AGG | 0.370162 | 1_3:+57631667 | None:intergenic |
| TTGTATGTCTTCCAAACATA+TGG | 0.379295 | 1_3:+57638855 | None:intergenic |
| CATAGATAGGACCATATGTT+TGG | 0.379474 | 1_3:-57638866 | Msa0128010:intron |
| ATGTTTGGATCCTACTAGTA+TGG | 0.392819 | 1_3:-57631536 | Msa0128010:three_prime_UTR |
| CCTAGCATGCACATTTCATC+TGG | 0.398573 | 1_3:+57633386 | None:intergenic |
| GAAGGATCTGAATGCGTTGC+TGG | 0.399764 | 1_3:-57634638 | Msa0128010:intron |
| ACAAAAGAAGCCATAATAGA+TGG | 0.412059 | 1_3:-57633215 | Msa0128010:CDS |
| ATAATCCTCATAATACCATT+AGG | 0.434153 | 1_3:+57633059 | None:intergenic |
| TGCTTCCTAATGGTATTATG+AGG | 0.438775 | 1_3:-57633064 | Msa0128010:CDS |
| TGGTTTAATTCCAGCGTTTG+TGG | 0.443623 | 1_3:+57637753 | None:intergenic |
| TAGACATATCCGAGTCTAGA+AGG | 0.448129 | 1_3:+57631727 | None:intergenic |
| CGTGTTAGACTAATAATATC+TGG | 0.450794 | 1_3:-57633796 | Msa0128010:CDS |
| ATGGAATCAATTCGTACAAA+AGG | 0.460579 | 1_3:-57637725 | Msa0128010:intron |
| CGATCAAGGATGTGAGCTAA+AGG | 0.462061 | 1_3:+57636769 | None:intergenic |
| TTTCCGTAACGGTGCATCCG+TGG | 0.462706 | 1_3:-57636728 | Msa0128010:CDS |
| TCAAGATAAGAAGGTTAAAG+AGG | 0.465855 | 1_3:-57638109 | Msa0128010:intron |
| CATCCGTGGGTTACTATCAC+GGG | 0.468782 | 1_3:-57636714 | Msa0128010:CDS |
| TCTGGAAATGTAAGAGTAGT+TGG | 0.472023 | 1_3:+57633404 | None:intergenic |
| AAGTCTCTTTCCATATCAAA+TGG | 0.472138 | 1_3:+57632064 | None:intergenic |
| AGAGGATTGTAACCCATGTC+TGG | 0.475731 | 1_3:+57633314 | None:intergenic |
| TTCCGTAACGGTGCATCCGT+GGG | 0.476822 | 1_3:-57636727 | Msa0128010:CDS |
| CATGGAACAATTTGAGGACA+AGG | 0.478090 | 1_3:-57636931 | Msa0128010:intron |
| AAAGATGAGGCCACAAACGC+TGG | 0.481975 | 1_3:-57637763 | Msa0128010:CDS |
| ATTGGAGAAATGCTTCCTAA+TGG | 0.484911 | 1_3:-57633074 | Msa0128010:CDS |
| CCAGATGAAATGTGCATGCT+AGG | 0.486775 | 1_3:-57633386 | Msa0128010:CDS |
| AACCCACGGATGCACCGTTA+CGG | 0.493528 | 1_3:+57636725 | None:intergenic |
| AATCTTGTTAAGCTTTCTCA+AGG | 0.500570 | 1_3:-57633023 | Msa0128010:CDS |
| TAATGAAGTGAAGCCCACTA+TGG | 0.502558 | 1_3:+57637798 | None:intergenic |
| ATTCTTCAATACAACGATCA+AGG | 0.508652 | 1_3:+57636755 | None:intergenic |
| AACGTACTAGCTTTAGTAAG+AGG | 0.510169 | 1_3:-57636966 | Msa0128010:CDS |
| GCGTAAAATTGTTGATGGAA+AGG | 0.513370 | 1_3:-57639005 | Msa0128010:intron |
| GAACTATACAAAAGTTTGAC+TGG | 0.515018 | 1_3:-57631777 | Msa0128010:CDS |
| CAAGGTCCTTACCATAGCCT+TGG | 0.521183 | 1_3:+57633710 | None:intergenic |
| GACATGGGTTACAATCCTCT+TGG | 0.525689 | 1_3:-57633311 | Msa0128010:CDS |
| GTATTATGAGGATTATTGAC+AGG | 0.526644 | 1_3:-57633052 | Msa0128010:CDS |
| CCTCTATGAAATTAGTTGAA+GGG | 0.527464 | 1_3:-57632124 | Msa0128010:intron |
| CTGGAATTAAACCATATACA+TGG | 0.532708 | 1_3:-57637744 | Msa0128010:CDS |
| GTATATATCCTAGGGGACAT+TGG | 0.534838 | 1_3:-57633092 | Msa0128010:intron |
| AAGGAGGACAAATACTTGAC+GGG | 0.536225 | 1_3:+57637066 | None:intergenic |
| TGTATTCAATGAATTGCGGC+TGG | 0.537145 | 1_3:-57633345 | Msa0128010:CDS |
| GATCAAGGATGTGAGCTAAA+GGG | 0.537448 | 1_3:+57636770 | None:intergenic |
| CAGCACGGCACCATACTAGT+AGG | 0.539736 | 1_3:+57631526 | None:intergenic |
| ATTTGATATGGAAAGAGACT+TGG | 0.545381 | 1_3:-57632062 | Msa0128010:CDS |
| GCCTTTGTATGCCAAGGCTA+TGG | 0.547652 | 1_3:-57633721 | Msa0128010:intron |
| GGCTACACTTACAGCCATAG+TGG | 0.547898 | 1_3:-57637812 | Msa0128010:intron |
| AAGGGATTTGAACATATCAA+AGG | 0.551479 | 1_3:-57632106 | Msa0128010:CDS |
| AAAGGAGGACAAATACTTGA+CGG | 0.560929 | 1_3:+57637065 | None:intergenic |
| TGCACAATAATGTATACAAG+TGG | 0.561176 | 1_3:-57637029 | Msa0128010:CDS |
| GCATCCGTGGGTTACTATCA+CGG | 0.561373 | 1_3:-57636715 | Msa0128010:CDS |
| AGGTTTCTACCTTCTAGACT+CGG | 0.565052 | 1_3:-57631736 | Msa0128010:three_prime_UTR |
| ATGTGCTACAAGCATACTAT+TGG | 0.567263 | 1_3:-57631563 | Msa0128010:three_prime_UTR |
| TTTCCATATCAAATGGAAGC+GGG | 0.571957 | 1_3:+57632071 | None:intergenic |
| ATGTATACAAGTGGAACTAG+TGG | 0.575171 | 1_3:-57637020 | Msa0128010:CDS |
| TCCACAATGGATTATCGCAA+TGG | 0.583541 | 1_3:-57638433 | Msa0128010:CDS |
| ACTTGTGCCTTTGTATGCCA+AGG | 0.583881 | 1_3:-57633727 | Msa0128010:CDS |
| CATTAGGTCAAAGCAAGGCT+AGG | 0.588553 | 1_3:-57633823 | Msa0128010:intron |
| AAATCCTCTAAGAGATTGAA+AGG | 0.590421 | 1_3:-57637926 | Msa0128010:intron |
| ACTAGCTTTAGTAAGAGGAA+TGG | 0.591608 | 1_3:-57636961 | Msa0128010:CDS |
| GCCGTGCTGTAATAGCATAT+TGG | 0.592200 | 1_3:-57631512 | Msa0128010:three_prime_UTR |
| ACCATAGCCTTGGCATACAA+AGG | 0.601421 | 1_3:+57633720 | None:intergenic |
| AAGAAGCCATAATAGATGGA+TGG | 0.604745 | 1_3:-57633211 | Msa0128010:CDS |
| GATGTGAGCTAAAGGGAGGA+AGG | 0.614011 | 1_3:+57636777 | None:intergenic |
| GTGCATATGTCATGAGCCAA+AGG | 0.615739 | 1_3:+57637047 | None:intergenic |
| AGATCTACTAGCCTTCAGAA+AGG | 0.615866 | 1_3:-57633934 | Msa0128010:intron |
| ATGTGCATGCTAGGCAATGT+TGG | 0.618977 | 1_3:-57633377 | Msa0128010:CDS |
| TTGCTTTGTGTAGATGACTG+TGG | 0.621448 | 1_3:-57636815 | Msa0128010:intron |
| GCTTCTGCTTTAAAAGCATG+TGG | 0.622653 | 1_3:-57638804 | Msa0128010:CDS |
| CTTTCCATATCAAATGGAAG+CGG | 0.623939 | 1_3:+57632070 | None:intergenic |
| CACACACACAACCTTTCTGA+AGG | 0.627067 | 1_3:+57633923 | None:intergenic |
| CACACCATTAGGTCAAAGCA+AGG | 0.630154 | 1_3:-57633828 | Msa0128010:intron |
| GGAACTAGTGGAGATCCTAA+AGG | 0.633228 | 1_3:-57637008 | Msa0128010:CDS |
| GCCAATATGCTATTACAGCA+CGG | 0.635300 | 1_3:+57631511 | None:intergenic |
| TAACTGTATTCAATGAATTG+CGG | 0.635370 | 1_3:-57633349 | Msa0128010:CDS |
| AAACTTGGCTGGATGAACAA+AGG | 0.640671 | 1_3:-57633987 | Msa0128010:CDS |
| ACAATGGATTATCGCAATGG+AGG | 0.642131 | 1_3:-57638430 | Msa0128010:intron |
| GGGCTTCACTTCATTAACTG+AGG | 0.642336 | 1_3:-57637791 | Msa0128010:CDS |
| CTGACACATATCTCACCACA+TGG | 0.645144 | 1_3:+57633281 | None:intergenic |
| AACTGAGGAAGAGAAAGATG+AGG | 0.647032 | 1_3:-57637776 | Msa0128010:CDS |
| GCTGGAGGAAGTTCCAGACA+TGG | 0.647892 | 1_3:-57633327 | Msa0128010:CDS |
| TCCATTGCGATAATCCATTG+TGG | 0.654182 | 1_3:+57638432 | None:intergenic |
| TTACCAAGTGTGTCATAGAG+AGG | 0.657682 | 1_3:+57638269 | None:intergenic |
| ATATGTTTGGAAGACATACA+AGG | 0.657772 | 1_3:-57638853 | Msa0128010:CDS |
| GCTACACTTACAGCCATAGT+GGG | 0.658633 | 1_3:-57637811 | Msa0128010:intron |
| CTGGAGGAAGTTCCAGACAT+GGG | 0.659695 | 1_3:-57633326 | Msa0128010:CDS |
| ATGGATCTAACTGTCCACAA+TGG | 0.660741 | 1_3:-57638446 | Msa0128010:CDS |
| ATTCAATGAATTGCGGCTGG+AGG | 0.661838 | 1_3:-57633342 | Msa0128010:CDS |
| CATATGTCATGAGCCAAAGG+AGG | 0.664582 | 1_3:+57637050 | None:intergenic |
| GTGCCTCTCTATGACACACT+TGG | 0.668273 | 1_3:-57638272 | Msa0128010:intron |
| CCAGGTTTGACAGAAACATG+TGG | 0.679060 | 1_3:-57633428 | Msa0128010:intron |
| GGATCTGAATGCGTTGCTGG+AGG | 0.681374 | 1_3:-57634635 | Msa0128010:CDS |
| CAAGGATGTGAGCTAAAGGG+AGG | 0.681394 | 1_3:+57636773 | None:intergenic |
| GAAGAGAAAATCAACCTGTG+TGG | 0.682894 | 1_3:+57633186 | None:intergenic |
| TAGGTCAAAGCAAGGCTAGG+CGG | 0.689698 | 1_3:-57633820 | Msa0128010:CDS |
| TGCAGGTATCAAGAAAGCAG+TGG | 0.690402 | 1_3:-57634404 | Msa0128010:intron |
| CCTCTTGGAACTCCTCCATG+TGG | 0.694715 | 1_3:-57633296 | Msa0128010:CDS |
| TACCCCGTGATAGTAACCCA+CGG | 0.697826 | 1_3:+57636711 | None:intergenic |
| ATAGATGGATGGTTCCACAC+AGG | 0.705801 | 1_3:-57633200 | Msa0128010:intron |
| GTTAGACTAATAATATCTGG+AGG | 0.707528 | 1_3:-57633793 | Msa0128010:CDS |
| TGTGGTGAGATATGTGTCAG+AGG | 0.711445 | 1_3:-57633278 | Msa0128010:CDS |
| CCACATGGAGGAGTTCCAAG+AGG | 0.716589 | 1_3:+57633296 | None:intergenic |
| ATCCGTGGGTTACTATCACG+GGG | 0.722483 | 1_3:-57636713 | Msa0128010:intron |
| ACACATATCTCACCACATGG+AGG | 0.748292 | 1_3:+57633284 | None:intergenic |
| TGGCACAACTAAATCCAGTG+AGG | 0.766617 | 1_3:-57634384 | Msa0128010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATAAATTTTTTAAAA+CGG | - | chr1_3:57634129-57634148 | Msa0128010:intron | 0.0% |
| !! | ATTAATAAATATTTGTATCA+AGG | + | chr1_3:57632415-57632434 | None:intergenic | 10.0% |
| !! | TATGAATTAATTAAAGATTA+AGG | + | chr1_3:57633567-57633586 | None:intergenic | 10.0% |
| !! | CCAAAAAAATAAAAATAAAT+TGG | + | chr1_3:57633869-57633888 | None:intergenic | 10.0% |
| !!! | CCAATTTATTTTTATTTTTT+TGG | - | chr1_3:57633866-57633885 | Msa0128010:intron | 10.0% |
| !! | AAATCTATTAAAATTAAGTA+AGG | + | chr1_3:57633941-57633960 | None:intergenic | 10.0% |
| !! | TTCAAAAATTTAAAAGTTTA+AGG | + | chr1_3:57634031-57634050 | None:intergenic | 10.0% |
| !! | TATATTACGTAATAAAATAT+GGG | + | chr1_3:57634589-57634608 | None:intergenic | 10.0% |
| !! | ATATATTACGTAATAAAATA+TGG | + | chr1_3:57634590-57634609 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTTGTTTTGA+AGG | - | chr1_3:57635942-57635961 | Msa0128010:intron | 10.0% |
| !! | TTGTCAAAAAAAAAAAATAT+AGG | + | chr1_3:57636159-57636178 | None:intergenic | 10.0% |
| !! | TTAGAGTTATAAATAAATAT+AGG | + | chr1_3:57636191-57636210 | None:intergenic | 10.0% |
| !!! | ATTTATAACTCTAAAAAAAA+TGG | - | chr1_3:57636197-57636216 | Msa0128010:intron | 10.0% |
| !!! | TGAAATTTAATTAATTTTAG+AGG | - | chr1_3:57636898-57636917 | Msa0128010:intron | 10.0% |
| !!! | AAAATAATAGAAATATTTTG+AGG | + | chr1_3:57637314-57637333 | None:intergenic | 10.0% |
| !!! | TATGTTTTTTATTTAAGATT+TGG | - | chr1_3:57637621-57637640 | Msa0128010:intron | 10.0% |
| !!! | ATGTTTTTTATTTAAGATTT+GGG | - | chr1_3:57637622-57637641 | Msa0128010:intron | 10.0% |
| !!! | ATTGTTTTTTGTTTTGTATT+TGG | - | chr1_3:57631572-57631591 | Msa0128010:three_prime_UTR | 15.0% |
| !!! | AATCATGTTGTTTATAATAT+TGG | - | chr1_3:57632142-57632161 | Msa0128010:intron | 15.0% |
| !!! | TCTTTTTTATATTAGCTATT+TGG | - | chr1_3:57632830-57632849 | Msa0128010:intron | 15.0% |
| !! | AATTAATTTCAATTTGTCAT+TGG | + | chr1_3:57633597-57633616 | None:intergenic | 15.0% |
| !! | AAATAAATTGGTCAATAAAT+GGG | + | chr1_3:57633857-57633876 | None:intergenic | 15.0% |
| !! | AAAATAAATTGGTCAATAAA+TGG | + | chr1_3:57633858-57633877 | None:intergenic | 15.0% |
| !!! | TAAAATTTCCCAATTTTATA+GGG | + | chr1_3:57633910-57633929 | None:intergenic | 15.0% |
| !!! | TTAAAATTTCCCAATTTTAT+AGG | + | chr1_3:57633911-57633930 | None:intergenic | 15.0% |
| !!! | ATTTTTGAACGATTTTTTTT+AGG | - | chr1_3:57634042-57634061 | Msa0128010:intron | 15.0% |
| !!! | AATTAAACAAATTTGATTTG+AGG | - | chr1_3:57634287-57634306 | Msa0128010:intron | 15.0% |
| !! | AGAACTATTAAAATTAAGTA+AGG | - | chr1_3:57634352-57634371 | Msa0128010:intron | 15.0% |
| !!! | TTAAAATGTCTCAATTTTAT+AGG | - | chr1_3:57634382-57634401 | Msa0128010:CDS | 15.0% |
| !!! | TAAAATGTCTCAATTTTATA+GGG | - | chr1_3:57634383-57634402 | Msa0128010:CDS | 15.0% |
| !! | TTAAATTGAAAGAACAATAA+AGG | + | chr1_3:57634623-57634642 | None:intergenic | 15.0% |
| !!! | TATAAAATTACGTTTAAAGT+TGG | - | chr1_3:57634718-57634737 | Msa0128010:intron | 15.0% |
| !!! | TTCACAAAATGTTTTTTTTA+AGG | + | chr1_3:57634943-57634962 | None:intergenic | 15.0% |
| !! | TCATATATAGATACAAAATA+GGG | - | chr1_3:57635120-57635139 | Msa0128010:intron | 15.0% |
| !!! | CTATTTTTTCAGAATTTATT+TGG | + | chr1_3:57635345-57635364 | None:intergenic | 15.0% |
| !! | AGAATTCTTTCAAAAAAAAA+TGG | - | chr1_3:57636220-57636239 | Msa0128010:intron | 15.0% |
| !!! | AAAAAAATGGAGAATTATTT+TGG | - | chr1_3:57636233-57636252 | Msa0128010:intron | 15.0% |
| !!! | AAAAAATGGAGAATTATTTT+GGG | - | chr1_3:57636234-57636253 | Msa0128010:intron | 15.0% |
| !!! | TTTTTTTTTATGAGTTTGTT+TGG | - | chr1_3:57636404-57636423 | Msa0128010:intron | 15.0% |
| !!! | TATTTCTATTATTTTCTTCT+TGG | - | chr1_3:57637319-57637338 | Msa0128010:intron | 15.0% |
| !! | TACAAATATATTTAACTCTT+AGG | - | chr1_3:57638043-57638062 | Msa0128010:intron | 15.0% |
| !!! | AAAGAAAATTTTAATGTAAC+AGG | + | chr1_3:57638159-57638178 | None:intergenic | 15.0% |
| !!! | GTTACATTAAAATTTTCTTT+AGG | - | chr1_3:57638159-57638178 | Msa0128010:CDS | 15.0% |
| !! | ATATATATCTTATGTTAAAG+AGG | - | chr1_3:57638540-57638559 | Msa0128010:intron | 15.0% |
| !! | TATATATCTTATGTTAAAGA+GGG | - | chr1_3:57638541-57638560 | Msa0128010:intron | 15.0% |
| !!! | TTTTTAGTGTTATGTAACTT+AGG | - | chr1_3:57631517-57631536 | Msa0128010:three_prime_UTR | 20.0% |
| !! | TACTATAATGTAAATAGACA+TGG | + | chr1_3:57631920-57631939 | None:intergenic | 20.0% |
| !!! | TATTATTGATGGTCTTATAT+AGG | - | chr1_3:57631982-57632001 | Msa0128010:intron | 20.0% |
| !!! | ATTATTGATGGTCTTATATA+GGG | - | chr1_3:57631983-57632002 | Msa0128010:intron | 20.0% |
| !!! | AATTTCTTCTCTTTAACTTA+TGG | - | chr1_3:57632247-57632266 | Msa0128010:intron | 20.0% |
| !! | CTAAGTTTCAATTTCAATAT+TGG | - | chr1_3:57632573-57632592 | Msa0128010:intron | 20.0% |
| !! | TTATGTATGTTATCTAAGTT+TGG | - | chr1_3:57632623-57632642 | Msa0128010:intron | 20.0% |
| !! | CATGTAAACTATATGAAAAA+TGG | + | chr1_3:57633623-57633642 | None:intergenic | 20.0% |
| !!! | TTTTTGATCCCTATAAAATT+GGG | - | chr1_3:57633899-57633918 | Msa0128010:intron | 20.0% |
| !! | CATAAAAAATAGGGTTAAAT+AGG | + | chr1_3:57634417-57634436 | None:intergenic | 20.0% |
| !!! | AGCATTTTGCATAAAAAATA+GGG | + | chr1_3:57634426-57634445 | None:intergenic | 20.0% |
| !!! | TAGCATTTTGCATAAAAAAT+AGG | + | chr1_3:57634427-57634446 | None:intergenic | 20.0% |
| !!! | AAGTCAAAAAAGTTTCTTTT+TGG | - | chr1_3:57634531-57634550 | Msa0128010:intron | 20.0% |
| !! | TGTAAAAGAAATATCTAATG+TGG | - | chr1_3:57634767-57634786 | Msa0128010:intron | 20.0% |
| !!! | TCTAATGTGGTAATTATTTT+TGG | - | chr1_3:57634780-57634799 | Msa0128010:intron | 20.0% |
| !! | CTCATATATAGATACAAAAT+AGG | - | chr1_3:57635119-57635138 | Msa0128010:intron | 20.0% |
| !!! | CATTTTGTAACTTCTAAATA+TGG | + | chr1_3:57635273-57635292 | None:intergenic | 20.0% |
| !! | TCAAAGTGTACAAATAAATA+TGG | - | chr1_3:57635424-57635443 | Msa0128010:intron | 20.0% |
| !! | CAAAGTGTACAAATAAATAT+GGG | - | chr1_3:57635425-57635444 | Msa0128010:intron | 20.0% |
| !! | TATTATAGTGTTAGTTAGTT+AGG | + | chr1_3:57635760-57635779 | None:intergenic | 20.0% |
| !! | CTAACACTATAATACTTATT+CGG | - | chr1_3:57635766-57635785 | Msa0128010:intron | 20.0% |
| !! | AGTTAACATCTTGTAATTTA+TGG | - | chr1_3:57635796-57635815 | Msa0128010:intron | 20.0% |
| !!! | GTTTTTGAAAAAGTTTATGA+AGG | - | chr1_3:57635901-57635920 | Msa0128010:intron | 20.0% |
| !! | TTGTTACATTAGGTATTAAT+GGG | + | chr1_3:57636339-57636358 | None:intergenic | 20.0% |
| !! | TTTGTTACATTAGGTATTAA+TGG | + | chr1_3:57636340-57636359 | None:intergenic | 20.0% |
| !!! | TCGTTTATATTTGTTACATT+AGG | + | chr1_3:57636349-57636368 | None:intergenic | 20.0% |
| !! | TACTGTATAAAACACAAAAT+AGG | + | chr1_3:57636463-57636482 | None:intergenic | 20.0% |
| !! | AGTCATTAAAAATGTATTAG+AGG | - | chr1_3:57636846-57636865 | Msa0128010:intron | 20.0% |
| !!! | AAAAAGTACATGTATGTATT+TGG | + | chr1_3:57636985-57637004 | None:intergenic | 20.0% |
| !!! | TTATTTAAGATTTGGGTATA+TGG | - | chr1_3:57637629-57637648 | Msa0128010:intron | 20.0% |
| !!! | TATTTAAGATTTGGGTATAT+GGG | - | chr1_3:57637630-57637649 | Msa0128010:intron | 20.0% |
| !! | ATTGAACAAAATTTATGCAT+GGG | + | chr1_3:57637889-57637908 | None:intergenic | 20.0% |
| !! | AATTGAACAAAATTTATGCA+TGG | + | chr1_3:57637890-57637909 | None:intergenic | 20.0% |
| !!! | AGTCATTATTTTGTTTTTGA+AGG | - | chr1_3:57637912-57637931 | Msa0128010:intron | 20.0% |
| !! | ATATATCTTATGTTAAAGAG+GGG | - | chr1_3:57638542-57638561 | Msa0128010:intron | 20.0% |
| !! | TTTGGTTTATGTTCATAGAT+AGG | - | chr1_3:57631590-57631609 | Msa0128010:three_prime_UTR | 25.0% |
| ! | TAAAACACGAATACGAAATT+TGG | + | chr1_3:57631826-57631845 | None:intergenic | 25.0% |
| ! | ATGACCATTTGATTAAGATA+AGG | + | chr1_3:57631868-57631887 | None:intergenic | 25.0% |
| ! | TTCTCAATGTCTATTATTGA+TGG | - | chr1_3:57631971-57631990 | Msa0128010:intron | 25.0% |
| ! | CTTATATAGGGTTCAAAAAT+TGG | - | chr1_3:57631995-57632014 | Msa0128010:intron | 25.0% |
| ! | GGTTCAAAAATTGGAATTTA+TGG | - | chr1_3:57632004-57632023 | Msa0128010:intron | 25.0% |
| ! | GTTGTTTATAATATTGGCAT+AGG | - | chr1_3:57632148-57632167 | Msa0128010:intron | 25.0% |
| !!! | TGTTTTTGTTCAAGATAAGA+AGG | - | chr1_3:57632351-57632370 | Msa0128010:intron | 25.0% |
| ! | ATAAAATAATCCAACCTGAA+AGG | - | chr1_3:57632865-57632884 | Msa0128010:intron | 25.0% |
| !!! | TTTAATTTTGTCAAACTCAC+GGG | + | chr1_3:57633144-57633163 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTGTCAAACTCA+CGG | + | chr1_3:57633145-57633164 | None:intergenic | 25.0% |
| !!! | AAAGTAAATTCTAAGATCTC+CGG | + | chr1_3:57633276-57633295 | None:intergenic | 25.0% |
| ! | TCTTAGAATTTACTTTGTAC+TGG | - | chr1_3:57633280-57633299 | Msa0128010:CDS | 25.0% |
| ! | GAAACATTATAATGCATGTT+TGG | + | chr1_3:57633327-57633346 | None:intergenic | 25.0% |
| !!! | GAAGAATATTTTTTCCGTAA+CGG | - | chr1_3:57633730-57633749 | Msa0128010:CDS | 25.0% |
| !! | GTTTTTGATCCCTATAAAAT+TGG | - | chr1_3:57633898-57633917 | Msa0128010:intron | 25.0% |
| !!! | TAAACAAATTTGATTTGAGG+AGG | - | chr1_3:57634290-57634309 | Msa0128010:intron | 25.0% |
| !!! | AAACAAATTTGATTTGAGGA+GGG | - | chr1_3:57634291-57634310 | Msa0128010:intron | 25.0% |
| !!! | GAGTGCAGAATTTTTTTTTA+TGG | - | chr1_3:57634323-57634342 | Msa0128010:intron | 25.0% |
| !! | AATAGGGTTAAATAGGTTTT+TGG | + | chr1_3:57634410-57634429 | None:intergenic | 25.0% |
| !! | TTTTTATGCAAAATGCTAAC+CGG | - | chr1_3:57634429-57634448 | Msa0128010:intron | 25.0% |
| ! | ATTGAAAAAATGTAGTCACA+CGG | + | chr1_3:57635243-57635262 | None:intergenic | 25.0% |
| ! | AATCACACAACTAAAAAATG+TGG | - | chr1_3:57635366-57635385 | Msa0128010:intron | 25.0% |
| ! | ACATCTTGTAATTTATGGAA+TGG | - | chr1_3:57635801-57635820 | Msa0128010:intron | 25.0% |
| !!! | TTCAATCAATTTTTTGTTGC+AGG | - | chr1_3:57636048-57636067 | Msa0128010:intron | 25.0% |
| !! | TGTGTTTTATACAGTAAACT+TGG | - | chr1_3:57636467-57636486 | Msa0128010:intron | 25.0% |
| !! | ATACATTTTTAATGACTCGA+TGG | + | chr1_3:57636843-57636862 | None:intergenic | 25.0% |
| ! | TAACTGTATTCAATGAATTG+CGG | - | chr1_3:57637120-57637139 | Msa0128010:intron | 25.0% |
| !! | TTGTTAACTCAGGATTTTTA+TGG | + | chr1_3:57637238-57637257 | None:intergenic | 25.0% |
| !!! | TAATAGAAATATTTTGAGGC+AGG | + | chr1_3:57637310-57637329 | None:intergenic | 25.0% |
| ! | ATTGTTTGGTATATATCCTA+GGG | - | chr1_3:57637369-57637388 | Msa0128010:intron | 25.0% |
| ! | ATAATCCTCATAATACCATT+AGG | + | chr1_3:57637413-57637432 | None:intergenic | 25.0% |
| !!! | AACATTTTCAAGATACTCAA+GGG | + | chr1_3:57637483-57637502 | None:intergenic | 25.0% |
| !!! | AAACATTTTCAAGATACTCA+AGG | + | chr1_3:57637484-57637503 | None:intergenic | 25.0% |
| ! | ATACTTACATCTTCAACTAT+TGG | + | chr1_3:57637518-57637537 | None:intergenic | 25.0% |
| ! | TTATTAGCAACATCTTCATT+TGG | + | chr1_3:57637692-57637711 | None:intergenic | 25.0% |
| ! | TAGAGACTAAAATTTCTACA+GGG | - | chr1_3:57637993-57638012 | Msa0128010:intron | 25.0% |
| ! | CAGAAATATACTCAATATAG+TGG | + | chr1_3:57638114-57638133 | None:intergenic | 25.0% |
| ! | CAACATGATCAAGTATTATA+AGG | - | chr1_3:57638458-57638477 | Msa0128010:CDS | 25.0% |
| !!! | AATTTGTTACTATTTGTTCG+AGG | + | chr1_3:57638600-57638619 | None:intergenic | 25.0% |
| !!! | AAATTTGTTGACATTGTAAC+AGG | - | chr1_3:57638658-57638677 | Msa0128010:intron | 25.0% |
| TTGTATGTCTTCCAAACATA+TGG | + | chr1_3:57631617-57631636 | None:intergenic | 30.0% | |
| ATATGTTTGGAAGACATACA+AGG | - | chr1_3:57631616-57631635 | Msa0128010:three_prime_UTR | 30.0% | |
| TGATTGAACAATTATCAGTG+TGG | + | chr1_3:57631791-57631810 | None:intergenic | 30.0% | |
| ATTGTTCAATCAAGATCAGA+CGG | - | chr1_3:57631799-57631818 | Msa0128010:intron | 30.0% | |
| CCATTTGATTAAGATAAGGA+CGG | + | chr1_3:57631864-57631883 | None:intergenic | 30.0% | |
| TAATCAAATGGTCATCAATG+TGG | - | chr1_3:57631873-57631892 | Msa0128010:intron | 30.0% | |
| AGACATTGAGAAGATTTCAT+TGG | + | chr1_3:57631963-57631982 | None:intergenic | 30.0% | |
| TCAAGATAAGAAGGTTAAAG+AGG | - | chr1_3:57632360-57632379 | Msa0128010:intron | 30.0% | |
| ! | CTGCAGACAATATATGTTTT+TGG | + | chr1_3:57632505-57632524 | None:intergenic | 30.0% |
| ! | AAATCCTCTAAGAGATTGAA+AGG | - | chr1_3:57632543-57632562 | Msa0128010:intron | 30.0% |
| ATTACCTTTCAATCTCTTAG+AGG | + | chr1_3:57632550-57632569 | None:intergenic | 30.0% | |
| CTGGAATTAAACCATATACA+TGG | - | chr1_3:57632725-57632744 | Msa0128010:intron | 30.0% | |
| ! | ACGAATTGATTCCATGTATA+TGG | + | chr1_3:57632739-57632758 | None:intergenic | 30.0% |
| ATGGAATCAATTCGTACAAA+AGG | - | chr1_3:57632744-57632763 | Msa0128010:intron | 30.0% | |
| AATCAATTCGTACAAAAGGT+AGG | - | chr1_3:57632748-57632767 | Msa0128010:intron | 30.0% | |
| ! | AGGTAGGTGTATGTTATTTA+AGG | - | chr1_3:57632764-57632783 | Msa0128010:intron | 30.0% |
| TCATTGATCGCATAAATTTC+AGG | + | chr1_3:57632983-57633002 | None:intergenic | 30.0% | |
| TATGCGATCAATGATGTTTA+AGG | - | chr1_3:57632989-57633008 | Msa0128010:CDS | 30.0% | |
| AACTTGCATGATTTGATTGA+AGG | + | chr1_3:57633092-57633111 | None:intergenic | 30.0% | |
| !! | AAGTAAATTCTAAGATCTCC+GGG | + | chr1_3:57633275-57633294 | None:intergenic | 30.0% |
| ! | GGACATTTCTTCTTTTGATA+AGG | + | chr1_3:57633306-57633325 | None:intergenic | 30.0% |
| TAATACGAAACAATCCTTAC+AGG | - | chr1_3:57633370-57633389 | Msa0128010:CDS | 30.0% | |
| AATACGAAACAATCCTTACA+GGG | - | chr1_3:57633371-57633390 | Msa0128010:CDS | 30.0% | |
| TGCACAATAATGTATACAAG+TGG | - | chr1_3:57633440-57633459 | Msa0128010:intron | 30.0% | |
| TGTGTTAAAACAACACCTTT+AGG | + | chr1_3:57633479-57633498 | None:intergenic | 30.0% | |
| ! | TCTTTTCATGGAACAATTTG+AGG | - | chr1_3:57633532-57633551 | Msa0128010:intron | 30.0% |
| ATTCTTCAATACAACGATCA+AGG | + | chr1_3:57633717-57633736 | None:intergenic | 30.0% | |
| AGTACTTGTAGAAAGATAGA+CGG | - | chr1_3:57633823-57633842 | Msa0128010:intron | 30.0% | |
| AAACAAACTTCGTTGTAACA+GGG | + | chr1_3:57634002-57634021 | None:intergenic | 30.0% | |
| TAAACAAACTTCGTTGTAAC+AGG | + | chr1_3:57634003-57634022 | None:intergenic | 30.0% | |
| AAAGAAGTCTTTCTTGAGAA+TGG | - | chr1_3:57635096-57635115 | Msa0128010:intron | 30.0% | |
| CCAAATACGTAAGGAATAAA+GGG | + | chr1_3:57635644-57635663 | None:intergenic | 30.0% | |
| ACTCTATAGATTAATATCCC+TGG | + | chr1_3:57635702-57635721 | None:intergenic | 30.0% | |
| !!! | TAAACTTTTTCAAAAACCCG+TGG | + | chr1_3:57635898-57635917 | None:intergenic | 30.0% |
| TGAAAAAGTTTATGAAGGCA+AGG | - | chr1_3:57635906-57635925 | Msa0128010:intron | 30.0% | |
| ! | TTTTATACAGTAAACTTGGC+TGG | - | chr1_3:57636471-57636490 | Msa0128010:intron | 30.0% |
| CGTGTTAGACTAATAATATC+TGG | - | chr1_3:57636673-57636692 | Msa0128010:intron | 30.0% | |
| GTTAGACTAATAATATCTGG+AGG | - | chr1_3:57636676-57636695 | Msa0128010:intron | 30.0% | |
| !!! | CAATTTTTGAGATAGTTCCA+AGG | + | chr1_3:57636780-57636799 | None:intergenic | 30.0% |
| TATTCCCTCTGAACTTAATT+TGG | - | chr1_3:57636958-57636977 | Msa0128010:CDS | 30.0% | |
| ACAATGATACACTGACATTA+AGG | - | chr1_3:57637010-57637029 | Msa0128010:CDS | 30.0% | |
| GACATTAAGGTTAATATTCC+AGG | - | chr1_3:57637023-57637042 | Msa0128010:CDS | 30.0% | |
| ACAAAAGAAGCCATAATAGA+TGG | - | chr1_3:57637254-57637273 | Msa0128010:intron | 30.0% | |
| CATTGTTTGGTATATATCCT+AGG | - | chr1_3:57637368-57637387 | Msa0128010:intron | 30.0% | |
| TTGTTTGGTATATATCCTAG+GGG | - | chr1_3:57637370-57637389 | Msa0128010:intron | 30.0% | |
| GTATTATGAGGATTATTGAC+AGG | - | chr1_3:57637417-57637436 | Msa0128010:intron | 30.0% | |
| AATCTTGTTAAGCTTTCTCA+AGG | - | chr1_3:57637446-57637465 | Msa0128010:intron | 30.0% | |
| ATGAAGATGTTGCTAATAAG+TGG | - | chr1_3:57637693-57637712 | Msa0128010:intron | 30.0% | |
| TGAAGATGTTGCTAATAAGT+GGG | - | chr1_3:57637694-57637713 | Msa0128010:intron | 30.0% | |
| ATAGCACATATCTCTTCAAT+TGG | + | chr1_3:57637769-57637788 | None:intergenic | 30.0% | |
| !!! | TTTTTGAAGGCATTAAATGC+AGG | - | chr1_3:57637925-57637944 | Msa0128010:intron | 30.0% |
| GTAGAGACTAAAATTTCTAC+AGG | - | chr1_3:57637992-57638011 | Msa0128010:intron | 30.0% | |
| TTTCTGTATCTAGTGTTATG+TGG | - | chr1_3:57638128-57638147 | Msa0128010:CDS | 30.0% | |
| ATCATTTCATCAATAGTGCA+TGG | + | chr1_3:57638232-57638251 | None:intergenic | 30.0% | |
| CAAATTTGTACTACCAAGTT+TGG | - | chr1_3:57638281-57638300 | Msa0128010:CDS | 30.0% | |
| TTAGAGATTCATACCAAACT+TGG | + | chr1_3:57638297-57638316 | None:intergenic | 30.0% | |
| TAGAGGCAGAAAAAATGAAA+AGG | + | chr1_3:57638331-57638350 | None:intergenic | 30.0% | |
| CCTCTATGAAATTAGTTGAA+GGG | - | chr1_3:57638345-57638364 | Msa0128010:intron | 30.0% | |
| AAGGGATTTGAACATATCAA+AGG | - | chr1_3:57638363-57638382 | Msa0128010:intron | 30.0% | |
| AAGTCTCTTTCCATATCAAA+TGG | + | chr1_3:57638408-57638427 | None:intergenic | 30.0% | |
| ATTTGATATGGAAAGAGACT+TGG | - | chr1_3:57638407-57638426 | Msa0128010:intron | 30.0% | |
| CTGCAACATTGAAAAAGAAA+AGG | - | chr1_3:57638433-57638452 | Msa0128010:CDS | 30.0% | |
| AAGAGACAACATCTTAGTAA+GGG | + | chr1_3:57638506-57638525 | None:intergenic | 30.0% | |
| AAAGAGACAACATCTTAGTA+AGG | + | chr1_3:57638507-57638526 | None:intergenic | 30.0% | |
| !! | GGAGTAATAAGGTTGATATT+GGG | - | chr1_3:57638563-57638582 | Msa0128010:intron | 30.0% |
| GAACTATACAAAAGTTTGAC+TGG | - | chr1_3:57638692-57638711 | Msa0128010:intron | 30.0% | |
| AGGTAGAAACCTCAAAATTT+AGG | + | chr1_3:57638725-57638744 | None:intergenic | 30.0% | |
| TAAGTACAACAAGCAACTTT+AGG | + | chr1_3:57638805-57638824 | None:intergenic | 30.0% | |
| !! | CACTTGTTTTCTTCAAACAT+GGG | + | chr1_3:57638853-57638872 | None:intergenic | 30.0% |
| !! | ACACTTGTTTTCTTCAAACA+TGG | + | chr1_3:57638854-57638873 | None:intergenic | 30.0% |
| !! | CATACTATTGGTGTTATGTT+TGG | - | chr1_3:57638918-57638937 | Msa0128010:intron | 30.0% |
| GAGAAAATGAATTGCTCTTT+AGG | - | chr1_3:57638995-57639014 | Msa0128010:intron | 30.0% | |
| ! | GCGTAAAATTGTTGATGGAA+AGG | - | chr1_3:57631464-57631483 | Msa0128010:three_prime_UTR | 35.0% |
| CATAGATAGGACCATATGTT+TGG | - | chr1_3:57631603-57631622 | Msa0128010:three_prime_UTR | 35.0% | |
| CCGTCCTTATCTTAATCAAA+TGG | - | chr1_3:57631861-57631880 | Msa0128010:intron | 35.0% | |
| !! | TGCATCAAAAGCACTTAATC+AGG | + | chr1_3:57632284-57632303 | None:intergenic | 35.0% |
| ! | TGATTAAGTGCTTTTGATGC+AGG | - | chr1_3:57632283-57632302 | Msa0128010:intron | 35.0% |
| AAATGCCTTCAATTGTTAGC+TGG | + | chr1_3:57632605-57632624 | None:intergenic | 35.0% | |
| CTAAGTTTGGTTGTTGTATG+TGG | - | chr1_3:57632636-57632655 | Msa0128010:intron | 35.0% | |
| GTCTACAATTGAGATTTCTC+TGG | - | chr1_3:57632911-57632930 | Msa0128010:intron | 35.0% | |
| ATGTTTAAGGATATCGCAAC+TGG | - | chr1_3:57633002-57633021 | Msa0128010:CDS | 35.0% | |
| TGTTTAAGGATATCGCAACT+GGG | - | chr1_3:57633003-57633022 | Msa0128010:CDS | 35.0% | |
| GGAATCTTGATCCACAATAA+GGG | - | chr1_3:57633024-57633043 | Msa0128010:CDS | 35.0% | |
| AAAGTTACACTCCCTTATTG+TGG | + | chr1_3:57633038-57633057 | None:intergenic | 35.0% | |
| ! | ATGCACTCCATTAGTCTATT+TGG | - | chr1_3:57633206-57633225 | Msa0128010:CDS | 35.0% |
| AAAGGAGGACAAATACTTGA+CGG | + | chr1_3:57633407-57633426 | None:intergenic | 35.0% | |
| ATGTATACAAGTGGAACTAG+TGG | - | chr1_3:57633449-57633468 | Msa0128010:intron | 35.0% | |
| !! | AACGTACTAGCTTTAGTAAG+AGG | - | chr1_3:57633503-57633522 | Msa0128010:intron | 35.0% |
| !! | ACTAGCTTTAGTAAGAGGAA+TGG | - | chr1_3:57633508-57633527 | Msa0128010:intron | 35.0% |
| ! | AAGAGGAATGGATCTTTTCA+TGG | - | chr1_3:57633520-57633539 | Msa0128010:intron | 35.0% |
| CTACACACACAGTATTTAAG+TGG | + | chr1_3:57634810-57634829 | None:intergenic | 35.0% | |
| TGAAGAGTCATGAGATGATA+AGG | - | chr1_3:57634959-57634978 | Msa0128010:intron | 35.0% | |
| TAGATACAAAATAGGGACAG+AGG | - | chr1_3:57635127-57635146 | Msa0128010:intron | 35.0% | |
| TAAATATGGGTGTCAACATG+TGG | - | chr1_3:57635438-57635457 | Msa0128010:intron | 35.0% | |
| ! | AAGCATTGTGACATTGTGAT+TGG | + | chr1_3:57635574-57635593 | None:intergenic | 35.0% |
| ! | AAGCATTGTGACATTGTGAT+TGG | - | chr1_3:57635574-57635593 | Msa0128010:intron | 35.0% |
| CCCTTTATTCCTTACGTATT+TGG | - | chr1_3:57635641-57635660 | Msa0128010:intron | 35.0% | |
| GCCAAATACGTAAGGAATAA+AGG | + | chr1_3:57635645-57635664 | None:intergenic | 35.0% | |
| !!! | ATGTTTTGGCCAAATACGTA+AGG | + | chr1_3:57635653-57635672 | None:intergenic | 35.0% |
| ATAGATTAATATCCCTGGAC+CGG | + | chr1_3:57635697-57635716 | None:intergenic | 35.0% | |
| ! | TTATGGAATGGTTTGCATGA+AGG | - | chr1_3:57635813-57635832 | Msa0128010:intron | 35.0% |
| TTAAAGCCAACATTGTTTGC+TGG | - | chr1_3:57635868-57635887 | Msa0128010:intron | 35.0% | |
| TTACTAGTACATGCAAGAGA+AGG | + | chr1_3:57636588-57636607 | None:intergenic | 35.0% | |
| TTTGACCTAATGGTGTGTAA+AGG | + | chr1_3:57636638-57636657 | None:intergenic | 35.0% | |
| TTCTTCAATCTCAGAGCTTA+AGG | + | chr1_3:57636707-57636726 | None:intergenic | 35.0% | |
| !! | TCACTCTTGTCCTTTTTAGT+TGG | - | chr1_3:57636816-57636835 | Msa0128010:intron | 35.0% |
| TGGTCCAAATTAAGTTCAGA+GGG | + | chr1_3:57636965-57636984 | None:intergenic | 35.0% | |
| TTGGTCCAAATTAAGTTCAG+AGG | + | chr1_3:57636966-57636985 | None:intergenic | 35.0% | |
| TCTGGAAATGTAAGAGTAGT+TGG | + | chr1_3:57637068-57637087 | None:intergenic | 35.0% | |
| ! | ATGGCTTCTTTTGTTAACTC+AGG | + | chr1_3:57637248-57637267 | None:intergenic | 35.0% |
| AAGAAGCCATAATAGATGGA+TGG | - | chr1_3:57637258-57637277 | Msa0128010:intron | 35.0% | |
| ! | GATTGTGTTGTGTCATTGTT+TGG | - | chr1_3:57637355-57637374 | Msa0128010:intron | 35.0% |
| ATTGGAGAAATGCTTCCTAA+TGG | - | chr1_3:57637395-57637414 | Msa0128010:intron | 35.0% | |
| TGCTTCCTAATGGTATTATG+AGG | - | chr1_3:57637405-57637424 | Msa0128010:intron | 35.0% | |
| GAATAGCTTCAAGTCAATAC+TGG | - | chr1_3:57637652-57637671 | Msa0128010:intron | 35.0% | |
| AATAAGTGGGCATATGCAAA+TGG | - | chr1_3:57637707-57637726 | Msa0128010:intron | 35.0% | |
| TGAGAAACAAGGTAACACAT+AGG | - | chr1_3:57637810-57637829 | Msa0128010:intron | 35.0% | |
| GCCTCTATGAAATTAGTTGA+AGG | - | chr1_3:57638344-57638363 | Msa0128010:intron | 35.0% | |
| CCCTTCAACTAATTTCATAG+AGG | + | chr1_3:57638348-57638367 | None:intergenic | 35.0% | |
| TTTCCATATCAAATGGAAGC+GGG | + | chr1_3:57638401-57638420 | None:intergenic | 35.0% | |
| CTTTCCATATCAAATGGAAG+CGG | + | chr1_3:57638402-57638421 | None:intergenic | 35.0% | |
| TGTTAAAGAGGGGAGTAATA+AGG | - | chr1_3:57638552-57638571 | Msa0128010:intron | 35.0% | |
| !! | GGGAGTAATAAGGTTGATAT+TGG | - | chr1_3:57638562-57638581 | Msa0128010:intron | 35.0% |
| ! | GGAGATAAGCCTAAATTTTG+AGG | - | chr1_3:57638713-57638732 | Msa0128010:intron | 35.0% |
| ATGTGCTACAAGCATACTAT+TGG | - | chr1_3:57638906-57638925 | Msa0128010:intron | 35.0% | |
| ATGTTTGGATCCTACTAGTA+TGG | - | chr1_3:57638933-57638952 | Msa0128010:intron | 35.0% | |
| GGATGGCGTAAAATTGTTGA+TGG | - | chr1_3:57631459-57631478 | Msa0128010:three_prime_UTR | 40.0% | |
| !! | GCTTCTGCTTTAAAAGCATG+TGG | - | chr1_3:57631665-57631684 | Msa0128010:three_prime_UTR | 40.0% |
| ! | TGTGGTGCTAAATCTGTAAG+TGG | - | chr1_3:57631683-57631702 | Msa0128010:three_prime_UTR | 40.0% |
| CATGGAGTCACAATTTAGTG+AGG | + | chr1_3:57631902-57631921 | None:intergenic | 40.0% | |
| ATGGATCTAACTGTCCACAA+TGG | - | chr1_3:57632023-57632042 | Msa0128010:CDS | 40.0% | |
| !! | TCCACAATGGATTATCGCAA+TGG | - | chr1_3:57632036-57632055 | Msa0128010:CDS | 40.0% |
| TCCATTGCGATAATCCATTG+TGG | + | chr1_3:57632040-57632059 | None:intergenic | 40.0% | |
| !! | ACAATGGATTATCGCAATGG+AGG | - | chr1_3:57632039-57632058 | Msa0128010:CDS | 40.0% |
| TTACCAAGTGTGTCATAGAG+AGG | + | chr1_3:57632203-57632222 | None:intergenic | 40.0% | |
| ATGCTCCAGCTAACAATTGA+AGG | - | chr1_3:57632597-57632616 | Msa0128010:intron | 40.0% | |
| TAATGAAGTGAAGCCCACTA+TGG | + | chr1_3:57632674-57632693 | None:intergenic | 40.0% | |
| AACTGAGGAAGAGAAAGATG+AGG | - | chr1_3:57632693-57632712 | Msa0128010:intron | 40.0% | |
| TGGTTTAATTCCAGCGTTTG+TGG | + | chr1_3:57632719-57632738 | None:intergenic | 40.0% | |
| ATAATCCAACCTGAAAGGAG+TGG | - | chr1_3:57632870-57632889 | Msa0128010:intron | 40.0% | |
| AACCTGAAAGGAGTGGTATA+GGG | - | chr1_3:57632877-57632896 | Msa0128010:intron | 40.0% | |
| GGGAATCTTGATCCACAATA+AGG | - | chr1_3:57633023-57633042 | Msa0128010:CDS | 40.0% | |
| CCTCACTCCAAATAGACTAA+TGG | + | chr1_3:57633216-57633235 | None:intergenic | 40.0% | |
| ! | CCATTAGTCTATTTGGAGTG+AGG | - | chr1_3:57633213-57633232 | Msa0128010:CDS | 40.0% |
| TCGCACATACTCTTTAATCC+CGG | - | chr1_3:57633254-57633273 | Msa0128010:CDS | 40.0% | |
| AAGGAGGACAAATACTTGAC+GGG | + | chr1_3:57633406-57633425 | None:intergenic | 40.0% | |
| GTCAAGTATTTGTCCTCCTT+TGG | - | chr1_3:57633406-57633425 | Msa0128010:CDS | 40.0% | |
| CATGGAACAATTTGAGGACA+AGG | - | chr1_3:57633538-57633557 | Msa0128010:intron | 40.0% | |
| TTGCTTTGTGTAGATGACTG+TGG | - | chr1_3:57633654-57633673 | Msa0128010:intron | 40.0% | |
| GATCAAGGATGTGAGCTAAA+GGG | + | chr1_3:57633702-57633721 | None:intergenic | 40.0% | |
| ! | AGAGGCACAAATTGAGCTAA+CGG | - | chr1_3:57635145-57635164 | Msa0128010:intron | 40.0% |
| AAATTGAGCTAACGGAGTGT+TGG | - | chr1_3:57635153-57635172 | Msa0128010:intron | 40.0% | |
| TATGTCACACAAGTGCTATC+CGG | + | chr1_3:57635486-57635505 | None:intergenic | 40.0% | |
| CACTTGTGTGACATAGAGTT+GGG | - | chr1_3:57635491-57635510 | Msa0128010:intron | 40.0% | |
| ! | TTGGGTGACATTGATGACAT+TGG | - | chr1_3:57635509-57635528 | Msa0128010:intron | 40.0% |
| ATTTGGCCAAAACATGCGTT+AGG | - | chr1_3:57635658-57635677 | Msa0128010:intron | 40.0% | |
| CATGCTCTACAACTAGTAAG+TGG | - | chr1_3:57636122-57636141 | Msa0128010:intron | 40.0% | |
| AAACTTGGCTGGATGAACAA+AGG | - | chr1_3:57636482-57636501 | Msa0128010:intron | 40.0% | |
| !! | AGATCTACTAGCCTTCAGAA+AGG | - | chr1_3:57636535-57636554 | Msa0128010:intron | 40.0% |
| CTAATGGTGTGTAAAGGAGA+AGG | + | chr1_3:57636632-57636651 | None:intergenic | 40.0% | |
| CTTCTCCTTTACACACCATT+AGG | - | chr1_3:57636630-57636649 | Msa0128010:intron | 40.0% | |
| ACTCGATGGACCAACTAAAA+AGG | + | chr1_3:57636829-57636848 | None:intergenic | 40.0% | |
| TGTATTCAATGAATTGCGGC+TGG | - | chr1_3:57637124-57637143 | Msa0128010:intron | 40.0% | |
| !!! | AGAGGCAAAAGTGTTTTCAC+TGG | - | chr1_3:57637209-57637228 | Msa0128010:intron | 40.0% |
| GTGGAACCATCCATCTATTA+TGG | + | chr1_3:57637267-57637286 | None:intergenic | 40.0% | |
| GAAGAGAAAATCAACCTGTG+TGG | + | chr1_3:57637286-57637305 | None:intergenic | 40.0% | |
| GTATATATCCTAGGGGACAT+TGG | - | chr1_3:57637377-57637396 | Msa0128010:intron | 40.0% | |
| CAAGTTCAGTGAACACTTTC+TGG | - | chr1_3:57637547-57637566 | Msa0128010:intron | 40.0% | |
| AAGCGAACATAGTTTGGAGA+AGG | + | chr1_3:57637744-57637763 | None:intergenic | 40.0% | |
| TTGGTCAAGCGAACATAGTT+TGG | + | chr1_3:57637750-57637769 | None:intergenic | 40.0% | |
| ATCTACAGCTGTGAGAAACA+AGG | - | chr1_3:57637799-57637818 | Msa0128010:CDS | 40.0% | |
| AGGTTTCTACCTTCTAGACT+CGG | - | chr1_3:57638733-57638752 | Msa0128010:intron | 40.0% | |
| TAGACATATCCGAGTCTAGA+AGG | + | chr1_3:57638745-57638764 | None:intergenic | 40.0% | |
| GCCAATATGCTATTACAGCA+CGG | + | chr1_3:57638961-57638980 | None:intergenic | 40.0% | |
| TTTGTCAAAGAGACGAGACG+AGG | - | chr1_3:57631547-57631566 | Msa0128010:three_prime_UTR | 45.0% | |
| GTTGAATGCATGCAGTCACA+CGG | + | chr1_3:57631769-57631788 | None:intergenic | 45.0% | |
| ! | AGTGCTTTTGATGCAGGTTC+TGG | - | chr1_3:57632289-57632308 | Msa0128010:intron | 45.0% |
| GCTACACTTACAGCCATAGT+GGG | - | chr1_3:57632658-57632677 | Msa0128010:intron | 45.0% | |
| GGGCTTCACTTCATTAACTG+AGG | - | chr1_3:57632678-57632697 | Msa0128010:intron | 45.0% | |
| ! | CTATACCACTCCTTTCAGGT+TGG | + | chr1_3:57632878-57632897 | None:intergenic | 45.0% |
| CAACCTGAAAGGAGTGGTAT+AGG | - | chr1_3:57632876-57632895 | Msa0128010:intron | 45.0% | |
| ACCTGAAAGGAGTGGTATAG+GGG | - | chr1_3:57632878-57632897 | Msa0128010:intron | 45.0% | |
| ! | CGGGTTTTCTTTTCCCTGTA+AGG | + | chr1_3:57633387-57633406 | None:intergenic | 45.0% |
| CATATGTCATGAGCCAAAGG+AGG | + | chr1_3:57633422-57633441 | None:intergenic | 45.0% | |
| GTGCATATGTCATGAGCCAA+AGG | + | chr1_3:57633425-57633444 | None:intergenic | 45.0% | |
| GGAACTAGTGGAGATCCTAA+AGG | - | chr1_3:57633461-57633480 | Msa0128010:intron | 45.0% | |
| CGATCAAGGATGTGAGCTAA+AGG | + | chr1_3:57633703-57633722 | None:intergenic | 45.0% | |
| TAGAAAGATAGACGGCACGT+TGG | - | chr1_3:57633831-57633850 | Msa0128010:intron | 45.0% | |
| ATATGGGTGTCAACATGTGG+AGG | - | chr1_3:57635441-57635460 | Msa0128010:intron | 45.0% | |
| TATGGGTGTCAACATGTGGA+GGG | - | chr1_3:57635442-57635461 | Msa0128010:intron | 45.0% | |
| ATGTCACACAAGTGCTATCC+GGG | + | chr1_3:57635485-57635504 | None:intergenic | 45.0% | |
| GCACTTGTGTGACATAGAGT+TGG | - | chr1_3:57635490-57635509 | Msa0128010:intron | 45.0% | |
| CACTTGGGTGACATAGAGTT+GGG | + | chr1_3:57635609-57635628 | None:intergenic | 45.0% | |
| GGTACACCAGCAAACAATGT+TGG | + | chr1_3:57635877-57635896 | None:intergenic | 45.0% | |
| ! | CATTGTTTGCTGGTGTACCA+CGG | - | chr1_3:57635878-57635897 | Msa0128010:intron | 45.0% |
| ! | ATTGTTTGCTGGTGTACCAC+GGG | - | chr1_3:57635879-57635898 | Msa0128010:intron | 45.0% |
| TGCAGGTATCAAGAAAGCAG+TGG | - | chr1_3:57636065-57636084 | Msa0128010:intron | 45.0% | |
| TGGCACAACTAAATCCAGTG+AGG | - | chr1_3:57636085-57636104 | Msa0128010:intron | 45.0% | |
| CCAAAAACTGTTCTCCTCAC+TGG | + | chr1_3:57636102-57636121 | None:intergenic | 45.0% | |
| ! | CCAGTGAGGAGAACAGTTTT+TGG | - | chr1_3:57636099-57636118 | Msa0128010:intron | 45.0% |
| CACACACACAACCTTTCTGA+AGG | + | chr1_3:57636549-57636568 | None:intergenic | 45.0% | |
| CACACCATTAGGTCAAAGCA+AGG | - | chr1_3:57636641-57636660 | Msa0128010:intron | 45.0% | |
| !! | CTAGCCTTGCTTTGACCTAA+TGG | + | chr1_3:57636648-57636667 | None:intergenic | 45.0% |
| CATTAGGTCAAAGCAAGGCT+AGG | - | chr1_3:57636646-57636665 | Msa0128010:intron | 45.0% | |
| ACTTGTGCCTTTGTATGCCA+AGG | - | chr1_3:57636742-57636761 | Msa0128010:CDS | 45.0% | |
| ! | ACCATAGCCTTGGCATACAA+AGG | + | chr1_3:57636752-57636771 | None:intergenic | 45.0% |
| TGTATGCCAAGGCTATGGTA+AGG | - | chr1_3:57636753-57636772 | Msa0128010:CDS | 45.0% | |
| ! | CCACATGTTTCTGTCAAACC+TGG | + | chr1_3:57637044-57637063 | None:intergenic | 45.0% |
| CCAGGTTTGACAGAAACATG+TGG | - | chr1_3:57637041-57637060 | Msa0128010:CDS | 45.0% | |
| CCTAGCATGCACATTTCATC+TGG | + | chr1_3:57637086-57637105 | None:intergenic | 45.0% | |
| CCAGATGAAATGTGCATGCT+AGG | - | chr1_3:57637083-57637102 | Msa0128010:intron | 45.0% | |
| ATGTGCATGCTAGGCAATGT+TGG | - | chr1_3:57637092-57637111 | Msa0128010:intron | 45.0% | |
| ATTCAATGAATTGCGGCTGG+AGG | - | chr1_3:57637127-57637146 | Msa0128010:intron | 45.0% | |
| AGAGGATTGTAACCCATGTC+TGG | + | chr1_3:57637158-57637177 | None:intergenic | 45.0% | |
| ! | GACATGGGTTACAATCCTCT+TGG | - | chr1_3:57637158-57637177 | Msa0128010:intron | 45.0% |
| ACACATATCTCACCACATGG+AGG | + | chr1_3:57637188-57637207 | None:intergenic | 45.0% | |
| CTGACACATATCTCACCACA+TGG | + | chr1_3:57637191-57637210 | None:intergenic | 45.0% | |
| TGTGGTGAGATATGTGTCAG+AGG | - | chr1_3:57637191-57637210 | Msa0128010:intron | 45.0% | |
| ATAGATGGATGGTTCCACAC+AGG | - | chr1_3:57637269-57637288 | Msa0128010:intron | 45.0% | |
| AGACCCGCTTCCATTTGATA+TGG | - | chr1_3:57638395-57638414 | Msa0128010:intron | 45.0% | |
| GCCGTGCTGTAATAGCATAT+TGG | - | chr1_3:57638957-57638976 | Msa0128010:intron | 45.0% | |
| !!! | CAATTTATTTTTATTTTTTT+GGG | - | chr1_3:57633867-57633886 | Msa0128010:intron | 5.0% |
| !! | TTTAAATTAAAAAAAAAGTT+TGG | - | chr1_3:57634832-57634851 | Msa0128010:intron | 5.0% |
| !! | AAAACAATAAAAAAAAAATT+TGG | + | chr1_3:57635993-57636012 | None:intergenic | 5.0% |
| !!! | TTTTAATAATTGATTTTATT+TGG | - | chr1_3:57636010-57636029 | Msa0128010:intron | 5.0% |
| !! | AATAAATTTAATAATTGTAT+TGG | + | chr1_3:57636278-57636297 | None:intergenic | 5.0% |
| !! | ATAGAAATATATTAAAATTA+TGG | - | chr1_3:57636380-57636399 | Msa0128010:intron | 5.0% |
| GTGCCTCTCTATGACACACT+TGG | - | chr1_3:57632197-57632216 | Msa0128010:intron | 50.0% | |
| GGCTACACTTACAGCCATAG+TGG | - | chr1_3:57632657-57632676 | Msa0128010:intron | 50.0% | |
| AAAGATGAGGCCACAAACGC+TGG | - | chr1_3:57632706-57632725 | Msa0128010:intron | 50.0% | |
| TCCCCTATACCACTCCTTTC+AGG | + | chr1_3:57632882-57632901 | None:intergenic | 50.0% | |
| GATGTGAGCTAAAGGGAGGA+AGG | + | chr1_3:57633695-57633714 | None:intergenic | 50.0% | |
| CAAGGATGTGAGCTAAAGGG+AGG | + | chr1_3:57633699-57633718 | None:intergenic | 50.0% | |
| ! | GCATCCGTGGGTTACTATCA+CGG | - | chr1_3:57633754-57633773 | Msa0128010:CDS | 50.0% |
| ! | CATCCGTGGGTTACTATCAC+GGG | - | chr1_3:57633755-57633774 | Msa0128010:CDS | 50.0% |
| ! | ATCCGTGGGTTACTATCACG+GGG | - | chr1_3:57633756-57633775 | Msa0128010:CDS | 50.0% |
| TACCCCGTGATAGTAACCCA+CGG | + | chr1_3:57633761-57633780 | None:intergenic | 50.0% | |
| GTATCCTTAACCCATGCTCG+AGG | + | chr1_3:57634457-57634476 | None:intergenic | 50.0% | |
| ! | GTTGTGACTTGTGAAGCTCC+CGG | - | chr1_3:57635464-57635483 | Msa0128010:intron | 50.0% |
| GCACTTGGGTGACATAGAGT+TGG | + | chr1_3:57635610-57635629 | None:intergenic | 50.0% | |
| GGGAGCTTCAGATAGCACTT+GGG | + | chr1_3:57635624-57635643 | None:intergenic | 50.0% | |
| AGGGAGCTTCAGATAGCACT+TGG | + | chr1_3:57635625-57635644 | None:intergenic | 50.0% | |
| ! | TGTGCGCCTAACGCATGTTT+TGG | + | chr1_3:57635667-57635686 | None:intergenic | 50.0% |
| GAAGGATCTGAATGCGTTGC+TGG | - | chr1_3:57635831-57635850 | Msa0128010:intron | 50.0% | |
| TAGGTCAAAGCAAGGCTAGG+CGG | - | chr1_3:57636649-57636668 | Msa0128010:intron | 50.0% | |
| GCCTTTGTATGCCAAGGCTA+TGG | - | chr1_3:57636748-57636767 | Msa0128010:CDS | 50.0% | |
| CAAGGTCCTTACCATAGCCT+TGG | + | chr1_3:57636762-57636781 | None:intergenic | 50.0% | |
| CAAGGCTATGGTAAGGACCT+TGG | - | chr1_3:57636760-57636779 | Msa0128010:CDS | 50.0% | |
| CTGGAGGAAGTTCCAGACAT+GGG | - | chr1_3:57637143-57637162 | Msa0128010:intron | 50.0% | |
| GCATTTCTCCAATGTCCCCT+AGG | + | chr1_3:57637388-57637407 | None:intergenic | 50.0% | |
| TTTCCGTAACGGTGCATCCG+TGG | - | chr1_3:57633741-57633760 | Msa0128010:CDS | 55.0% | |
| TTCCGTAACGGTGCATCCGT+GGG | - | chr1_3:57633742-57633761 | Msa0128010:CDS | 55.0% | |
| AACCCACGGATGCACCGTTA+CGG | + | chr1_3:57633747-57633766 | None:intergenic | 55.0% | |
| TTAACCCATGCTCGAGGCAC+CGG | + | chr1_3:57634451-57634470 | None:intergenic | 55.0% | |
| ACATGCGTTAGGCGCACATG+TGG | - | chr1_3:57635669-57635688 | Msa0128010:intron | 55.0% | |
| GGATCTGAATGCGTTGCTGG+AGG | - | chr1_3:57635834-57635853 | Msa0128010:intron | 55.0% | |
| GCTGGAGGAAGTTCCAGACA+TGG | - | chr1_3:57637142-57637161 | Msa0128010:intron | 55.0% | |
| CCACATGGAGGAGTTCCAAG+AGG | + | chr1_3:57637176-57637195 | None:intergenic | 55.0% | |
| CCTCTTGGAACTCCTCCATG+TGG | - | chr1_3:57637173-57637192 | Msa0128010:intron | 55.0% | |
| CAGCACGGCACCATACTAGT+AGG | + | chr1_3:57638946-57638965 | None:intergenic | 55.0% | |
| CTAACCGGTGCCTCGAGCAT+GGG | - | chr1_3:57634444-57634463 | Msa0128010:intron | 60.0% | |
| ! | GGTGCCTCGAGCATGGGTTA+AGG | - | chr1_3:57634450-57634469 | Msa0128010:intron | 60.0% |
| GTTAGGCGCACATGTGGTGC+CGG | - | chr1_3:57635675-57635694 | Msa0128010:intron | 60.0% | |
| GCTAACCGGTGCCTCGAGCA+TGG | - | chr1_3:57634443-57634462 | Msa0128010:intron | 65.0% | |
| !! | GCACATGTGGTGCCGGTCCA+GGG | - | chr1_3:57635682-57635701 | Msa0128010:intron | 65.0% |
| !! | CGCACATGTGGTGCCGGTCC+AGG | - | chr1_3:57635681-57635700 | Msa0128010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57631456 | 57639035 | 57631456 | ID=Msa0128010;Name=Msa0128010 |
| chr1_3 | mRNA | 57631456 | 57639035 | 57631456 | ID=Msa0128010-mRNA-1;Parent=Msa0128010;Name=Msa0128010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.87|0.94|1|0.87|0.88|17|302|521 |
| chr1_3 | exon | 57631456 | 57631811 | 57631456 | ID=Msa0128010-mRNA-1:exon:18359;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57632012 | 57632131 | 57632012 | ID=Msa0128010-mRNA-1:exon:18358;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57632962 | 57633101 | 57632962 | ID=Msa0128010-mRNA-1:exon:18357;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57633201 | 57633446 | 57633201 | ID=Msa0128010-mRNA-1:exon:18356;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57633722 | 57633839 | 57633722 | ID=Msa0128010-mRNA-1:exon:18355;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57633935 | 57634010 | 57633935 | ID=Msa0128010-mRNA-1:exon:18354;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57634355 | 57634421 | 57634355 | ID=Msa0128010-mRNA-1:exon:18353;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57634629 | 57634656 | 57634629 | ID=Msa0128010-mRNA-1:exon:18352;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57636714 | 57636824 | 57636714 | ID=Msa0128010-mRNA-1:exon:18351;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57636932 | 57637099 | 57636932 | ID=Msa0128010-mRNA-1:exon:18350;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57637726 | 57637820 | 57637726 | ID=Msa0128010-mRNA-1:exon:18349;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57637927 | 57637966 | 57637927 | ID=Msa0128010-mRNA-1:exon:18348;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57638110 | 57638186 | 57638110 | ID=Msa0128010-mRNA-1:exon:18347;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57638273 | 57638321 | 57638273 | ID=Msa0128010-mRNA-1:exon:18346;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57638431 | 57638487 | 57638431 | ID=Msa0128010-mRNA-1:exon:18345;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57638794 | 57638883 | 57638794 | ID=Msa0128010-mRNA-1:exon:18344;Parent=Msa0128010-mRNA-1 |
| chr1_3 | exon | 57639006 | 57639035 | 57639006 | ID=Msa0128010-mRNA-1:exon:18343;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57639006 | 57639035 | 57639006 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57638794 | 57638883 | 57638794 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57638431 | 57638487 | 57638431 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57638273 | 57638321 | 57638273 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57638110 | 57638186 | 57638110 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57637927 | 57637966 | 57637927 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57637726 | 57637820 | 57637726 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57636932 | 57637099 | 57636932 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57636714 | 57636824 | 57636714 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57634629 | 57634656 | 57634629 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57634355 | 57634421 | 57634355 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57633935 | 57634010 | 57633935 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57633722 | 57633839 | 57633722 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57633201 | 57633446 | 57633201 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57632962 | 57633101 | 57632962 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57632012 | 57632131 | 57632012 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | CDS | 57631758 | 57631811 | 57631758 | ID=Msa0128010-mRNA-1:cds;Parent=Msa0128010-mRNA-1 |
| chr1_3 | three_prime_UTR | 57631456 | 57631757 | 57631456 | ID=Msa0128010-mRNA-1:three_prime_utr;Parent=Msa0128010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
