Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128130 | G7ICX7 | 87.768 | 327 | 9 | 1 | 1 | 296 | 1 | 327 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034120 | Msa0128130 | 0.854553 | 1.140195e-61 | -8.615850e-47 |
| Msa0128130 | Msa1460040 | 0.892339 | 1.738770e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128130 | MtrunA17_Chr1g0194641 | 87.768 | 327 | 9 | 1 | 1 | 296 | 1 | 327 | 0.0 | 574 |
| Msa0128130 | MtrunA17_Chr1g0160321 | 37.209 | 172 | 90 | 8 | 15 | 182 | 14 | 171 | 7.52e-19 | 85.5 |
| Msa0128130 | MtrunA17_Chr7g0221421 | 29.348 | 276 | 150 | 12 | 37 | 276 | 35 | 301 | 2.97e-18 | 84.0 |
| Msa0128130 | MtrunA17_Chr3g0113571 | 30.570 | 193 | 112 | 7 | 64 | 246 | 16 | 196 | 2.48e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128130 | AT2G16760.1 | 56.402 | 328 | 101 | 8 | 6 | 296 | 5 | 327 | 8.93e-115 | 334 |
| Msa0128130 | AT2G47370.1 | 52.836 | 335 | 114 | 8 | 1 | 296 | 1 | 330 | 1.21e-108 | 318 |
| Msa0128130 | AT2G47370.2 | 50.000 | 280 | 98 | 6 | 1 | 242 | 1 | 276 | 1.12e-82 | 251 |
| Msa0128130 | AT5G28660.1 | 54.545 | 176 | 66 | 4 | 67 | 242 | 5 | 166 | 8.03e-51 | 166 |
| Msa0128130 | AT2G01410.1 | 32.178 | 202 | 111 | 9 | 4 | 196 | 15 | 199 | 1.05e-15 | 77.0 |
Find 70 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTACTCAACTTTC+TGG | 0.135973 | 1_3:-57766021 | Msa0128130:CDS |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1_3:+57766411 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1_3:+57763481 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1_3:-57763526 | Msa0128130:CDS |
| CATCCCCAAGGACGCATTTC+CGG | 0.246404 | 1_3:+57766146 | None:intergenic |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1_3:-57763544 | Msa0128130:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1_3:-57763481 | Msa0128130:CDS |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1_3:-57763445 | Msa0128130:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1_3:-57763494 | Msa0128130:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1_3:-57766115 | Msa0128130:CDS |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1_3:-57763469 | Msa0128130:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1_3:-57763737 | Msa0128130:CDS |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1_3:+57763335 | None:intergenic |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1_3:-57763746 | Msa0128130:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1_3:-57763551 | Msa0128130:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1_3:-57763334 | Msa0128130:CDS |
| TTGGCCGGAAATGCGTCCTT+GGG | 0.354441 | 1_3:-57766150 | Msa0128130:CDS |
| TCAGTTGTTGCAAAATTCTC+AGG | 0.366423 | 1_3:-57763409 | Msa0128130:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1_3:-57763738 | Msa0128130:CDS |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1_3:-57763392 | Msa0128130:CDS |
| GTTGGCCGGAAATGCGTCCT+TGG | 0.388059 | 1_3:-57766151 | Msa0128130:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1_3:-57763729 | Msa0128130:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1_3:+57763329 | None:intergenic |
| ATCAGCAGAGGGAACAGTAT+TGG | 0.437377 | 1_3:-57766202 | Msa0128130:CDS |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1_3:-57763728 | Msa0128130:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1_3:-57766122 | Msa0128130:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1_3:-57763441 | Msa0128130:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1_3:-57766093 | Msa0128130:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1_3:-57763458 | Msa0128130:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1_3:+57763517 | None:intergenic |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1_3:-57763680 | Msa0128130:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1_3:-57763344 | Msa0128130:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1_3:-57763541 | Msa0128130:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1_3:+57766377 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1_3:-57763468 | Msa0128130:CDS |
| CAGTTGTTGCAAAATTCTCA+GGG | 0.533397 | 1_3:-57763408 | Msa0128130:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1_3:-57766298 | Msa0128130:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1_3:+57766371 | None:intergenic |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1_3:+57766336 | None:intergenic |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.543764 | 1_3:-57766165 | Msa0128130:CDS |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1_3:-57763488 | Msa0128130:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1_3:+57766115 | None:intergenic |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1_3:+57766022 | None:intergenic |
| AGTGACTGTACTGAAAGAAA+CGG | 0.558585 | 1_3:-57766175 | Msa0128130:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1_3:+57763797 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1_3:+57763385 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1_3:-57763667 | Msa0128130:intron |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1_3:+57766398 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1_3:+57763454 | None:intergenic |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1_3:-57763367 | Msa0128130:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1_3:-57766387 | Msa0128130:CDS |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1_3:-57763366 | Msa0128130:CDS |
| CCTTGGGGATGACGATTGAC+CGG | 0.594993 | 1_3:-57766134 | Msa0128130:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1_3:-57763340 | Msa0128130:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1_3:-57766232 | Msa0128130:CDS |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1_3:-57763302 | Msa0128130:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1_3:-57766324 | Msa0128130:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1_3:-57763371 | Msa0128130:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1_3:-57763736 | Msa0128130:CDS |
| CCGGTCAATCGTCATCCCCA+AGG | 0.634626 | 1_3:+57766134 | None:intergenic |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1_3:+57766372 | None:intergenic |
| TGTACTGAAAGAAACGGAGT+TGG | 0.646572 | 1_3:-57766169 | Msa0128130:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1_3:-57766128 | Msa0128130:CDS |
| TGGCCGGAAATGCGTCCTTG+GGG | 0.654709 | 1_3:-57766149 | Msa0128130:CDS |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1_3:-57763786 | Msa0128130:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1_3:+57766388 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1_3:-57763540 | Msa0128130:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1_3:+57766403 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1_3:+57766335 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.701939 | 1_3:-57766050 | Msa0128130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAGTTTTTTATATAAAT+TGG | + | chr1_3:57763910-57763929 | None:intergenic | 10.0% |
| !! | TATATAAAAAACTTATGTAA+AGG | - | chr1_3:57763913-57763932 | Msa0128130:intron | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+GGG | + | chr1_3:57764217-57764236 | None:intergenic | 10.0% |
| !!! | TTAAATTATAAGTCTTTTTT+TGG | + | chr1_3:57764218-57764237 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1_3:57764305-57764324 | None:intergenic | 10.0% |
| !!! | TCATTTACTTTTTTTTTTTT+TGG | + | chr1_3:57764762-57764781 | None:intergenic | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | - | chr1_3:57765037-57765056 | Msa0128130:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | - | chr1_3:57765038-57765057 | Msa0128130:intron | 10.0% |
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1_3:57765800-57765819 | Msa0128130:intron | 10.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1_3:57764221-57764240 | Msa0128130:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1_3:57764222-57764241 | Msa0128130:intron | 15.0% |
| !!! | ATTTGTAGATCTTTTTTTTT+TGG | - | chr1_3:57764541-57764560 | Msa0128130:intron | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1_3:57765428-57765447 | None:intergenic | 15.0% |
| !! | ATATATACTGTATAAAACAA+CGG | + | chr1_3:57765453-57765472 | None:intergenic | 15.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1_3:57765541-57765560 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1_3:57765613-57765632 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1_3:57765613-57765632 | None:intergenic | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1_3:57765904-57765923 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1_3:57765908-57765927 | Msa0128130:intron | 15.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1_3:57763858-57763877 | None:intergenic | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1_3:57763856-57763875 | Msa0128130:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1_3:57763905-57763924 | None:intergenic | 20.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1_3:57764021-57764040 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1_3:57764022-57764041 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1_3:57764112-57764131 | Msa0128130:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1_3:57764920-57764939 | Msa0128130:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1_3:57765347-57765366 | Msa0128130:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1_3:57765366-57765385 | Msa0128130:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1_3:57765611-57765630 | Msa0128130:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1_3:57765611-57765630 | Msa0128130:intron | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1_3:57765813-57765832 | Msa0128130:intron | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1_3:57766011-57766030 | Msa0128130:intron | 20.0% |
| !! | ATTACTATTAAGAATCATCT+GGG | + | chr1_3:57766141-57766160 | None:intergenic | 20.0% |
| !! | AATTACTATTAAGAATCATC+TGG | + | chr1_3:57766142-57766161 | None:intergenic | 20.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1_3:57763498-57763517 | None:intergenic | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1_3:57763499-57763518 | Msa0128130:CDS | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1_3:57763763-57763782 | None:intergenic | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1_3:57763855-57763874 | Msa0128130:intron | 25.0% |
| ! | ATAAGATGACATTGAATGAA+TGG | + | chr1_3:57763974-57763993 | None:intergenic | 25.0% |
| ! | TATCAACTGAGTTAAGTTTA+CGG | + | chr1_3:57764151-57764170 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1_3:57764179-57764198 | Msa0128130:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1_3:57764184-57764203 | Msa0128130:intron | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1_3:57764370-57764389 | Msa0128130:intron | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1_3:57764692-57764711 | None:intergenic | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1_3:57764784-57764803 | Msa0128130:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1_3:57764788-57764807 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1_3:57764825-57764844 | None:intergenic | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1_3:57765243-57765262 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1_3:57765538-57765557 | None:intergenic | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1_3:57765723-57765742 | Msa0128130:intron | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1_3:57765812-57765831 | Msa0128130:intron | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1_3:57766020-57766039 | Msa0128130:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1_3:57766021-57766040 | Msa0128130:CDS | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1_3:57766153-57766172 | Msa0128130:CDS | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1_3:57766183-57766202 | Msa0128130:CDS | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1_3:57766213-57766232 | Msa0128130:CDS | 25.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1_3:57766216-57766235 | Msa0128130:CDS | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1_3:57766217-57766236 | Msa0128130:CDS | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1_3:57763495-57763514 | None:intergenic | 30.0% | |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1_3:57763502-57763521 | Msa0128130:CDS | 30.0% |
| TATGTAAAGGAGAGTTTAGT+TGG | - | chr1_3:57763926-57763945 | Msa0128130:intron | 30.0% | |
| ATCAACTGAGTTAAGTTTAC+GGG | + | chr1_3:57764150-57764169 | None:intergenic | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1_3:57764354-57764373 | Msa0128130:intron | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1_3:57764431-57764450 | Msa0128130:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1_3:57764480-57764499 | None:intergenic | 30.0% | |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1_3:57764480-57764499 | Msa0128130:intron | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1_3:57764938-57764957 | Msa0128130:intron | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1_3:57765141-57765160 | Msa0128130:intron | 30.0% |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1_3:57765261-57765280 | None:intergenic | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1_3:57765316-57765335 | None:intergenic | 30.0% |
| AATAACGGTTGTATCTGAAT+TGG | + | chr1_3:57765598-57765617 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1_3:57765687-57765706 | Msa0128130:intron | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1_3:57765688-57765707 | Msa0128130:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1_3:57765731-57765750 | None:intergenic | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1_3:57765731-57765750 | Msa0128130:intron | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1_3:57766019-57766038 | Msa0128130:CDS | 30.0% | |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1_3:57766078-57766097 | None:intergenic | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1_3:57766091-57766110 | None:intergenic | 30.0% |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1_3:57766090-57766109 | Msa0128130:CDS | 30.0% | |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1_3:57766182-57766201 | Msa0128130:CDS | 30.0% |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1_3:57766206-57766225 | Msa0128130:CDS | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1_3:57766243-57766262 | None:intergenic | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1_3:57766263-57766282 | Msa0128130:CDS | 30.0% | |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1_3:57766452-57766471 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1_3:57766453-57766472 | None:intergenic | 30.0% |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1_3:57763458-57763477 | Msa0128130:CDS | 35.0% |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1_3:57763459-57763478 | Msa0128130:CDS | 35.0% | |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1_3:57763508-57763527 | Msa0128130:CDS | 35.0% |
| AGTGACTGTACTGAAAGAAA+CGG | - | chr1_3:57763582-57763601 | Msa0128130:intron | 35.0% | |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1_3:57763707-57763726 | Msa0128130:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1_3:57763738-57763757 | None:intergenic | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1_3:57763736-57763755 | Msa0128130:CDS | 35.0% | |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1_3:57763932-57763951 | Msa0128130:intron | 35.0% |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1_3:57764646-57764665 | Msa0128130:intron | 35.0% | |
| ! | GTTAACTCTTGTTGTGTTGT+AGG | + | chr1_3:57764717-57764736 | None:intergenic | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1_3:57764951-57764970 | Msa0128130:intron | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1_3:57765062-57765081 | Msa0128130:intron | 35.0% |
| GCATGGTGTGCATATTATAT+GGG | + | chr1_3:57765103-57765122 | None:intergenic | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1_3:57765104-57765123 | None:intergenic | 35.0% | |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1_3:57765130-57765149 | None:intergenic | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1_3:57765216-57765235 | None:intergenic | 35.0% | |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1_3:57765772-57765791 | Msa0128130:intron | 35.0% |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1_3:57765852-57765871 | Msa0128130:intron | 35.0% | |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1_3:57766079-57766098 | None:intergenic | 35.0% |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1_3:57766077-57766096 | Msa0128130:CDS | 35.0% | |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1_3:57766103-57766122 | Msa0128130:CDS | 35.0% |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1_3:57766120-57766139 | None:intergenic | 35.0% | |
| ACTATTAAGAATCATCTGGG+TGG | + | chr1_3:57766138-57766157 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1_3:57766269-57766288 | Msa0128130:CDS | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1_3:57766312-57766331 | Msa0128130:CDS | 35.0% | |
| TCAGTTGTTGCAAAATTCTC+AGG | - | chr1_3:57766348-57766367 | Msa0128130:CDS | 35.0% | |
| CAGTTGTTGCAAAATTCTCA+GGG | - | chr1_3:57766349-57766368 | Msa0128130:CDS | 35.0% | |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1_3:57766413-57766432 | Msa0128130:CDS | 35.0% |
| CAATTCCAACCATATGGTTT+AGG | + | chr1_3:57766425-57766444 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1_3:57766423-57766442 | Msa0128130:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1_3:57766455-57766474 | Msa0128130:exon | 35.0% |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1_3:57763349-57763368 | None:intergenic | 40.0% |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1_3:57763388-57763407 | None:intergenic | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1_3:57763389-57763408 | None:intergenic | 40.0% | |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1_3:57763424-57763443 | None:intergenic | 40.0% |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1_3:57763425-57763444 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1_3:57763433-57763452 | Msa0128130:CDS | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1_3:57763525-57763544 | Msa0128130:CDS | 40.0% | |
| !!! | TGCTGATTCTTTTTCCGGTA+CGG | + | chr1_3:57763542-57763561 | None:intergenic | 40.0% |
| TGTACTGAAAGAAACGGAGT+TGG | - | chr1_3:57763588-57763607 | Msa0128130:intron | 40.0% | |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1_3:57763664-57763683 | Msa0128130:intron | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1_3:57764461-57764480 | Msa0128130:intron | 40.0% | |
| ! | CTCTTGTTGTGTTGTAGGAT+AGG | + | chr1_3:57764712-57764731 | None:intergenic | 40.0% |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1_3:57764880-57764899 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1_3:57765176-57765195 | None:intergenic | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1_3:57765177-57765196 | Msa0128130:intron | 40.0% | |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1_3:57765762-57765781 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1_3:57765759-57765778 | Msa0128130:intron | 40.0% |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1_3:57765937-57765956 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1_3:57765938-57765957 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1_3:57766028-57766047 | Msa0128130:CDS | 40.0% | |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1_3:57766029-57766048 | Msa0128130:CDS | 40.0% |
| GAATGGCACAAAACATTGGT+TGG | - | chr1_3:57766094-57766113 | Msa0128130:CDS | 40.0% | |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1_3:57766188-57766207 | Msa0128130:CDS | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1_3:57766231-57766250 | Msa0128130:CDS | 40.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1_3:57766299-57766318 | Msa0128130:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1_3:57766316-57766335 | Msa0128130:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1_3:57766375-57766394 | None:intergenic | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1_3:57766417-57766436 | Msa0128130:CDS | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1_3:57766431-57766450 | None:intergenic | 40.0% | |
| GATGATTATGCCGATGGGTA+TGG | + | chr1_3:57763383-57763402 | None:intergenic | 45.0% | |
| ACCGGAAAAAGAATCAGCAG+AGG | - | chr1_3:57763543-57763562 | Msa0128130:CDS | 45.0% | |
| !!! | CCCTCTGCTGATTCTTTTTC+CGG | + | chr1_3:57763547-57763566 | None:intergenic | 45.0% |
| CCGGAAAAAGAATCAGCAGA+GGG | - | chr1_3:57763544-57763563 | Msa0128130:CDS | 45.0% | |
| ATCAGCAGAGGGAACAGTAT+TGG | - | chr1_3:57763555-57763574 | Msa0128130:CDS | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1_3:57764660-57764679 | Msa0128130:intron | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1_3:57764867-57764886 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1_3:57764970-57764989 | Msa0128130:intron | 45.0% | |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1_3:57764982-57765001 | Msa0128130:intron | 45.0% |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1_3:57765120-57765139 | None:intergenic | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1_3:57765302-57765321 | Msa0128130:intron | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1_3:57765750-57765769 | None:intergenic | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1_3:57765926-57765945 | Msa0128130:intron | 45.0% |
| CTCATCACCTGCATTGAATG+GGG | + | chr1_3:57765936-57765955 | None:intergenic | 45.0% | |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1_3:57765963-57765982 | None:intergenic | 45.0% | |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1_3:57765971-57765990 | Msa0128130:intron | 45.0% |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1_3:57766237-57766256 | Msa0128130:CDS | 45.0% |
| CCAGCAACCACAACCTTATT+AGG | + | chr1_3:57766279-57766298 | None:intergenic | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1_3:57766276-57766295 | Msa0128130:CDS | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1_3:57766289-57766308 | Msa0128130:CDS | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1_3:57766390-57766409 | Msa0128130:CDS | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1_3:57766391-57766410 | Msa0128130:CDS | 45.0% | |
| !!! | ATAAGTTTTTTATATAAATT+GGG | + | chr1_3:57763909-57763928 | None:intergenic | 5.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1_3:57764249-57764268 | Msa0128130:intron | 5.0% |
| CTCTCTCTCTCTCTCTCTCA+TGG | - | chr1_3:57763303-57763322 | Msa0128130:CDS | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1_3:57763357-57763376 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1_3:57763362-57763381 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1_3:57763370-57763389 | Msa0128130:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1_3:57763592-57763611 | Msa0128130:intron | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1_3:57763635-57763654 | Msa0128130:intron | 50.0% | |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1_3:57763645-57763664 | None:intergenic | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1_3:57764673-57764692 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1_3:57764860-57764879 | Msa0128130:intron | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1_3:57764861-57764880 | Msa0128130:intron | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1_3:57764868-57764887 | Msa0128130:intron | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1_3:57764977-57764996 | None:intergenic | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1_3:57765744-57765763 | Msa0128130:intron | 50.0% |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1_3:57766288-57766307 | Msa0128130:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1_3:57766306-57766325 | None:intergenic | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1_3:57766365-57766384 | Msa0128130:CDS | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1_3:57766386-57766405 | Msa0128130:CDS | 50.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1_3:57763372-57763391 | None:intergenic | 55.0% | |
| TTGGCCGGAAATGCGTCCTT+GGG | - | chr1_3:57763607-57763626 | Msa0128130:intron | 55.0% | |
| CATCCCCAAGGACGCATTTC+CGG | + | chr1_3:57763614-57763633 | None:intergenic | 55.0% | |
| CCTTGGGGATGACGATTGAC+CGG | - | chr1_3:57763623-57763642 | Msa0128130:intron | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1_3:57763629-57763648 | Msa0128130:intron | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1_3:57763642-57763661 | Msa0128130:intron | 55.0% | |
| GTTGGCCGGAAATGCGTCCT+TGG | - | chr1_3:57763606-57763625 | Msa0128130:intron | 60.0% | |
| TGGCCGGAAATGCGTCCTTG+GGG | - | chr1_3:57763608-57763627 | Msa0128130:intron | 60.0% | |
| CCGGTCAATCGTCATCCCCA+AGG | + | chr1_3:57763626-57763645 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57763291 | 57766488 | 57763291 | ID=Msa0128130;Name=Msa0128130 |
| chr1_3 | mRNA | 57763291 | 57766488 | 57763291 | ID=Msa0128130-mRNA-1;Parent=Msa0128130;Name=Msa0128130-mRNA-1;_AED=0.15;_eAED=0.15;_QI=31|0.5|0.33|1|1|1|3|0|296 |
| chr1_3 | exon | 57763291 | 57763575 | 57763291 | ID=Msa0128130-mRNA-1:exon:18416;Parent=Msa0128130-mRNA-1 |
| chr1_3 | exon | 57763668 | 57763831 | 57763668 | ID=Msa0128130-mRNA-1:exon:18415;Parent=Msa0128130-mRNA-1 |
| chr1_3 | exon | 57766016 | 57766488 | 57766016 | ID=Msa0128130-mRNA-1:exon:18414;Parent=Msa0128130-mRNA-1 |
| chr1_3 | five_prime_UTR | 57766458 | 57766488 | 57766458 | ID=Msa0128130-mRNA-1:five_prime_utr;Parent=Msa0128130-mRNA-1 |
| chr1_3 | CDS | 57766016 | 57766457 | 57766016 | ID=Msa0128130-mRNA-1:cds;Parent=Msa0128130-mRNA-1 |
| chr1_3 | CDS | 57763668 | 57763831 | 57763668 | ID=Msa0128130-mRNA-1:cds;Parent=Msa0128130-mRNA-1 |
| chr1_3 | CDS | 57763291 | 57763575 | 57763291 | ID=Msa0128130-mRNA-1:cds;Parent=Msa0128130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
