Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034120 | XP_003591397.1 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034120 | G7ICX7 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019900 | Msa0034120 | 0.811357 | 7.289111e-51 | -8.615850e-47 |
| Msa0032460 | Msa0034120 | 0.802756 | 4.823404e-49 | -8.615850e-47 |
| Msa0034120 | Msa0035270 | 0.803941 | 2.740584e-49 | -8.615850e-47 |
| Msa0034120 | Msa0035340 | 0.813903 | 2.022190e-51 | -8.615850e-47 |
| Msa0034120 | Msa0065020 | 0.800080 | 1.704706e-48 | -8.615850e-47 |
| Msa0034120 | Msa0067330 | 0.819563 | 1.087447e-52 | -8.615850e-47 |
| Msa0034120 | Msa0128130 | 0.854553 | 1.140195e-61 | -8.615850e-47 |
| Msa0034120 | Msa0158860 | 0.832501 | 9.117844e-56 | -8.615850e-47 |
| Msa0034120 | Msa0174120 | 0.969569 | 2.575866e-130 | -8.615850e-47 |
| Msa0034120 | Msa0226310 | 0.811687 | 6.179863e-51 | -8.615850e-47 |
| Msa0034120 | Msa0304570 | 0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0034120 | Msa0304680 | 0.824886 | 6.328783e-54 | -8.615850e-47 |
| Msa0034120 | Msa0453040 | 0.801267 | 9.761463e-49 | -8.615850e-47 |
| Msa0034120 | Msa0580370 | 0.814722 | 1.332955e-51 | -8.615850e-47 |
| Msa0034120 | Msa0701220 | 0.803283 | 3.752886e-49 | -8.615850e-47 |
| Msa0034120 | Msa0780910 | 0.807083 | 6.010140e-50 | -8.615850e-47 |
| Msa0034120 | Msa0795870 | 0.806835 | 6.780935e-50 | -8.615850e-47 |
| Msa0034120 | Msa0821160 | 0.810195 | 1.300773e-50 | -8.615850e-47 |
| Msa0034120 | Msa0833650 | 0.812389 | 4.345026e-51 | -8.615850e-47 |
| Msa0034120 | Msa1042160 | 0.800165 | 1.638244e-48 | -8.615850e-47 |
| Msa0034120 | Msa1042190 | 0.801452 | 8.943736e-49 | -8.615850e-47 |
| Msa0034120 | Msa1077990 | 0.801099 | 1.056330e-48 | -8.615850e-47 |
| Msa0034120 | Msa1132840 | 0.814009 | 1.916426e-51 | -8.615850e-47 |
| Msa0034120 | Msa1174230 | 0.803157 | 3.986076e-49 | -8.615850e-47 |
| Msa0034120 | Msa1174780 | 0.802199 | 6.284689e-49 | -8.615850e-47 |
| Msa0034120 | Msa1240770 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa0034120 | Msa1276830 | 0.804905 | 1.725824e-49 | -8.615850e-47 |
| Msa0034120 | Msa1460040 | 0.951068 | 4.447675e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034120 | MtrunA17_Chr1g0194641 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Msa0034120 | MtrunA17_Chr7g0221421 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 8.91e-31 | 119 |
| Msa0034120 | MtrunA17_Chr1g0160321 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.42e-28 | 113 |
| Msa0034120 | MtrunA17_Chr3g0113571 | 31.227 | 269 | 164 | 10 | 55 | 307 | 6 | 269 | 1.35e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034120 | AT2G16760.1 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 4.01e-142 | 405 |
| Msa0034120 | AT2G47370.1 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.74e-134 | 385 |
| Msa0034120 | AT2G47370.2 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.53e-108 | 317 |
| Msa0034120 | AT5G28660.1 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.12e-45 | 153 |
| Msa0034120 | AT2G01410.1 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.20e-25 | 103 |
Find 88 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAATCTGTTTAGGTTTA+TGG | 0.005941 | 1_1:+62007290 | None:intergenic |
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1_1:-62010070 | Msa0034120:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1_1:-62007690 | Msa0034120:CDS |
| AAACAGATTTGGTTAAAATT+TGG | 0.186616 | 1_1:-62007280 | Msa0034120:three_prime_UTR |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1_1:+62010460 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1_1:+62007516 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1_1:-62007561 | Msa0034120:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1_1:-62007579 | Msa0034120:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1_1:-62007516 | Msa0034120:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1_1:+62010195 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1_1:-62007480 | Msa0034120:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1_1:-62007529 | Msa0034120:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1_1:-62010164 | Msa0034120:CDS |
| GATAAACTCTGGTAGAAATT+TGG | 0.292992 | 1_1:-62007201 | Msa0034120:three_prime_UTR |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1_1:-62007504 | Msa0034120:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1_1:-62007773 | Msa0034120:CDS |
| GTTAAAATTTGGTGTTCCTT+TGG | 0.311459 | 1_1:-62007269 | Msa0034120:three_prime_UTR |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1_1:+62007370 | None:intergenic |
| TCCATAAACCTAAACAGATT+TGG | 0.320624 | 1_1:-62007291 | Msa0034120:three_prime_UTR |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1_1:-62007782 | Msa0034120:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1_1:-62007586 | Msa0034120:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1_1:-62007369 | Msa0034120:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1_1:-62010199 | Msa0034120:CDS |
| TCAGTTGTTGCAAAATTCTC+AGG | 0.366423 | 1_1:-62007444 | Msa0034120:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1_1:-62007774 | Msa0034120:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1_1:+62007676 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1_1:-62007427 | Msa0034120:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1_1:-62007765 | Msa0034120:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1_1:+62007364 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1_1:+62007654 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1_1:-62007764 | Msa0034120:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1_1:-62010171 | Msa0034120:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1_1:-62007476 | Msa0034120:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1_1:+62010247 | None:intergenic |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1_1:-62010251 | Msa0034120:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1_1:-62010142 | Msa0034120:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1_1:-62007493 | Msa0034120:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1_1:-62010200 | Msa0034120:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1_1:+62007552 | None:intergenic |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1_1:-62007716 | Msa0034120:CDS |
| GGTATAATGCTCAATGTCAA+TGG | 0.522644 | 1_1:-62007132 | Msa0034120:three_prime_UTR |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1_1:-62007604 | Msa0034120:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1_1:-62007379 | Msa0034120:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1_1:-62007576 | Msa0034120:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1_1:+62010426 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1_1:-62007503 | Msa0034120:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1_1:-62010214 | Msa0034120:CDS |
| CAGTTGTTGCAAAATTCTCA+GGG | 0.533397 | 1_1:-62007443 | Msa0034120:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1_1:-62010347 | Msa0034120:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1_1:+62010420 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1_1:-62007669 | Msa0034120:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1_1:+62010385 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1_1:-62007523 | Msa0034120:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1_1:+62010164 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1_1:-62010224 | Msa0034120:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1_1:+62010071 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1_1:-62007699 | Msa0034120:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1_1:+62007833 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1_1:+62007420 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1_1:-62007703 | Msa0034120:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1_1:+62010447 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1_1:+62007489 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1_1:-62007610 | Msa0034120:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1_1:-62007402 | Msa0034120:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1_1:-62010436 | Msa0034120:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1_1:-62007609 | Msa0034120:CDS |
| TAATGCTCAATGTCAATGGT+AGG | 0.584520 | 1_1:-62007128 | Msa0034120:three_prime_UTR |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1_1:-62007401 | Msa0034120:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1_1:-62010183 | Msa0034120:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1_1:-62007375 | Msa0034120:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1_1:-62010281 | Msa0034120:CDS |
| CTATCTAGAAAGATAAACTC+TGG | 0.603512 | 1_1:-62007212 | Msa0034120:three_prime_UTR |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1_1:-62007337 | Msa0034120:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1_1:-62010218 | Msa0034120:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1_1:-62010373 | Msa0034120:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1_1:-62007406 | Msa0034120:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1_1:-62007772 | Msa0034120:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1_1:+62010421 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1_1:-62010198 | Msa0034120:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1_1:-62010177 | Msa0034120:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1_1:+62007655 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1_1:-62007822 | Msa0034120:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1_1:+62010437 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1_1:-62007575 | Msa0034120:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1_1:+62010452 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1_1:+62010384 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1_1:+62007658 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1_1:-62010099 | Msa0034120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTTTTTTATATAAATT+GGG | + | chr1_1:62007710-62007729 | None:intergenic | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | + | chr1_1:62007711-62007730 | None:intergenic | 10.0% |
| !!! | TTAAATTATAAGTCTTTTTT+GGG | + | chr1_1:62008022-62008041 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1_1:62008109-62008128 | None:intergenic | 10.0% |
| !!! | ATCATTTACTTTTTTTTTTT+TGG | + | chr1_1:62008566-62008585 | None:intergenic | 10.0% |
| !! | TTAATAATTCAATATAAGAT+AGG | - | chr1_1:62008841-62008860 | Msa0034120:intron | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1_1:62009256-62009275 | None:intergenic | 10.0% |
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1_1:62009614-62009633 | Msa0034120:intron | 10.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1_1:62007715-62007734 | Msa0034120:CDS | 15.0% |
| !!! | CTTAAATTATAAGTCTTTTT+TGG | + | chr1_1:62008023-62008042 | None:intergenic | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1_1:62008025-62008044 | Msa0034120:intron | 15.0% |
| !!! | ATTTGTAGATCTTTTTTTTT+TGG | - | chr1_1:62008345-62008364 | Msa0034120:intron | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1_1:62009231-62009250 | None:intergenic | 15.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1_1:62009339-62009358 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+AGG | + | chr1_1:62009423-62009442 | None:intergenic | 15.0% |
| !!! | CTTTATTTAATGAATCTAAA+AGG | - | chr1_1:62009421-62009440 | Msa0034120:intron | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1_1:62009423-62009442 | None:intergenic | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1_1:62009718-62009737 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1_1:62009722-62009741 | Msa0034120:intron | 15.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1_1:62007659-62007678 | None:intergenic | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1_1:62007657-62007676 | Msa0034120:CDS | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1_1:62007706-62007725 | None:intergenic | 20.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1_1:62007823-62007842 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1_1:62007824-62007843 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1_1:62007917-62007936 | Msa0034120:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1_1:62008723-62008742 | Msa0034120:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1_1:62009150-62009169 | Msa0034120:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1_1:62009169-62009188 | Msa0034120:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1_1:62009469-62009488 | Msa0034120:intron | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1_1:62009627-62009646 | Msa0034120:intron | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1_1:62009825-62009844 | Msa0034120:intron | 20.0% |
| !!! | AATTTTAACCAAATCTGTTT+AGG | + | chr1_1:62010327-62010346 | None:intergenic | 20.0% |
| !!! | AAACAGATTTGGTTAAAATT+TGG | - | chr1_1:62010327-62010346 | Msa0034120:CDS | 20.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1_1:62007299-62007318 | None:intergenic | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1_1:62007300-62007319 | Msa0034120:three_prime_UTR | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1_1:62007564-62007583 | None:intergenic | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1_1:62007656-62007675 | Msa0034120:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1_1:62007776-62007795 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1_1:62007984-62008003 | Msa0034120:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1_1:62007989-62008008 | Msa0034120:intron | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1_1:62008174-62008193 | Msa0034120:intron | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1_1:62008496-62008515 | None:intergenic | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1_1:62008587-62008606 | Msa0034120:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1_1:62008591-62008610 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1_1:62008628-62008647 | None:intergenic | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1_1:62009046-62009065 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1_1:62009336-62009355 | None:intergenic | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1_1:62009533-62009552 | Msa0034120:intron | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1_1:62009626-62009645 | Msa0034120:intron | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1_1:62009834-62009853 | Msa0034120:intron | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1_1:62009835-62009854 | Msa0034120:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1_1:62009955-62009974 | None:intergenic | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1_1:62009956-62009975 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1_1:62009968-62009987 | Msa0034120:intron | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1_1:62009998-62010017 | Msa0034120:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1_1:62010028-62010047 | Msa0034120:intron | 25.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1_1:62010031-62010050 | Msa0034120:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1_1:62010032-62010051 | Msa0034120:intron | 25.0% |
| !!! | TTCCTTTGGTTTTTTATGTT+TGG | - | chr1_1:62010352-62010371 | Msa0034120:CDS | 25.0% |
| ! | AACCAAACATAAAAAACCAA+AGG | + | chr1_1:62010357-62010376 | None:intergenic | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1_1:62007296-62007315 | None:intergenic | 30.0% | |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1_1:62007303-62007322 | Msa0034120:three_prime_UTR | 30.0% |
| TATCAACTGAGCTAAGTTTA+CGG | + | chr1_1:62007956-62007975 | None:intergenic | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1_1:62008158-62008177 | Msa0034120:intron | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1_1:62008235-62008254 | Msa0034120:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1_1:62008284-62008303 | None:intergenic | 30.0% | |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1_1:62008284-62008303 | Msa0034120:intron | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1_1:62008521-62008540 | None:intergenic | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1_1:62008741-62008760 | Msa0034120:intron | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1_1:62008944-62008963 | Msa0034120:intron | 30.0% |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1_1:62009064-62009083 | None:intergenic | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1_1:62009119-62009138 | None:intergenic | 30.0% |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1_1:62009497-62009516 | Msa0034120:intron | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1_1:62009498-62009517 | Msa0034120:intron | 30.0% | |
| TCGGTCCTATATATAAAGTT+TGG | + | chr1_1:62009541-62009560 | None:intergenic | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1_1:62009833-62009852 | Msa0034120:intron | 30.0% | |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1_1:62009892-62009911 | None:intergenic | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1_1:62009905-62009924 | None:intergenic | 30.0% |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1_1:62009904-62009923 | Msa0034120:intron | 30.0% | |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1_1:62009997-62010016 | Msa0034120:intron | 30.0% |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1_1:62010021-62010040 | Msa0034120:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1_1:62010058-62010077 | None:intergenic | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1_1:62010078-62010097 | Msa0034120:CDS | 30.0% | |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1_1:62010267-62010286 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1_1:62010268-62010287 | None:intergenic | 30.0% |
| TCCATAAACCTAAACAGATT+TGG | - | chr1_1:62010316-62010335 | Msa0034120:CDS | 30.0% | |
| ! | ACCAAATCTGTTTAGGTTTA+TGG | + | chr1_1:62010320-62010339 | None:intergenic | 30.0% |
| !! | GTTAAAATTTGGTGTTCCTT+TGG | - | chr1_1:62010338-62010357 | Msa0034120:CDS | 30.0% |
| CTATCTAGAAAGATAAACTC+TGG | - | chr1_1:62010395-62010414 | Msa0034120:CDS | 30.0% | |
| GATAAACTCTGGTAGAAATT+TGG | - | chr1_1:62010406-62010425 | Msa0034120:CDS | 30.0% | |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1_1:62007259-62007278 | Msa0034120:three_prime_UTR | 35.0% |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1_1:62007260-62007279 | Msa0034120:three_prime_UTR | 35.0% | |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1_1:62007309-62007328 | Msa0034120:exon | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1_1:62007383-62007402 | Msa0034120:CDS | 35.0% |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1_1:62007508-62007527 | Msa0034120:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1_1:62007539-62007558 | None:intergenic | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1_1:62007537-62007556 | Msa0034120:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1_1:62007728-62007747 | Msa0034120:CDS | 35.0% | |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1_1:62007734-62007753 | Msa0034120:CDS | 35.0% |
| ATCAACTGAGCTAAGTTTAC+GGG | + | chr1_1:62007955-62007974 | None:intergenic | 35.0% | |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1_1:62008450-62008469 | Msa0034120:intron | 35.0% | |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1_1:62008516-62008535 | None:intergenic | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1_1:62008754-62008773 | Msa0034120:intron | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1_1:62008865-62008884 | Msa0034120:intron | 35.0% |
| GCATGGTGTGCATATTATAT+GGG | + | chr1_1:62008906-62008925 | None:intergenic | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1_1:62008907-62008926 | None:intergenic | 35.0% | |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1_1:62008933-62008952 | None:intergenic | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1_1:62009019-62009038 | None:intergenic | 35.0% | |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1_1:62009586-62009605 | Msa0034120:intron | 35.0% |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1_1:62009666-62009685 | Msa0034120:intron | 35.0% | |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1_1:62009893-62009912 | None:intergenic | 35.0% |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1_1:62009891-62009910 | Msa0034120:intron | 35.0% | |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1_1:62009917-62009936 | Msa0034120:intron | 35.0% |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1_1:62009934-62009953 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1_1:62010084-62010103 | Msa0034120:CDS | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1_1:62010127-62010146 | Msa0034120:CDS | 35.0% | |
| TCAGTTGTTGCAAAATTCTC+AGG | - | chr1_1:62010163-62010182 | Msa0034120:CDS | 35.0% | |
| CAGTTGTTGCAAAATTCTCA+GGG | - | chr1_1:62010164-62010183 | Msa0034120:CDS | 35.0% | |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1_1:62010228-62010247 | Msa0034120:CDS | 35.0% |
| CAATTCCAACCATATGGTTT+AGG | + | chr1_1:62010240-62010259 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1_1:62010238-62010257 | Msa0034120:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1_1:62010270-62010289 | Msa0034120:CDS | 35.0% |
| TATACCGACAGAGAAAAACA+AGG | + | chr1_1:62010461-62010480 | None:intergenic | 35.0% | |
| GGTATAATGCTCAATGTCAA+TGG | - | chr1_1:62010475-62010494 | Msa0034120:CDS | 35.0% | |
| TAATGCTCAATGTCAATGGT+AGG | - | chr1_1:62010479-62010498 | Msa0034120:CDS | 35.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1_1:62007150-62007169 | None:intergenic | 40.0% |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1_1:62007189-62007208 | None:intergenic | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1_1:62007190-62007209 | None:intergenic | 40.0% | |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1_1:62007225-62007244 | None:intergenic | 40.0% |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1_1:62007226-62007245 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1_1:62007234-62007253 | Msa0034120:three_prime_UTR | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1_1:62007326-62007345 | Msa0034120:CDS | 40.0% | |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1_1:62007343-62007362 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1_1:62007389-62007408 | Msa0034120:CDS | 40.0% |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1_1:62007465-62007484 | Msa0034120:CDS | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1_1:62008265-62008284 | Msa0034120:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1_1:62008683-62008702 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1_1:62008979-62008998 | None:intergenic | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1_1:62008980-62008999 | Msa0034120:intron | 40.0% | |
| TTATATATAGGACCGACCAG+AGG | - | chr1_1:62009545-62009564 | Msa0034120:intron | 40.0% | |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1_1:62009576-62009595 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1_1:62009573-62009592 | Msa0034120:intron | 40.0% |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1_1:62009751-62009770 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1_1:62009752-62009771 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1_1:62009842-62009861 | Msa0034120:intron | 40.0% | |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1_1:62009843-62009862 | Msa0034120:intron | 40.0% |
| GAATGGCACAAAACATTGGT+TGG | - | chr1_1:62009908-62009927 | Msa0034120:intron | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1_1:62009952-62009971 | None:intergenic | 40.0% | |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1_1:62010003-62010022 | Msa0034120:intron | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1_1:62010046-62010065 | Msa0034120:intron | 40.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1_1:62010114-62010133 | Msa0034120:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1_1:62010131-62010150 | Msa0034120:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1_1:62010190-62010209 | None:intergenic | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1_1:62010232-62010251 | Msa0034120:CDS | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1_1:62010246-62010265 | None:intergenic | 40.0% | |
| !!! | CAGTCCTTGTTTTTCTCTGT+CGG | - | chr1_1:62010454-62010473 | Msa0034120:CDS | 40.0% |
| GATGATTATGCCGATGGGTA+TGG | + | chr1_1:62007184-62007203 | None:intergenic | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1_1:62007344-62007363 | Msa0034120:CDS | 45.0% | |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1_1:62007348-62007367 | None:intergenic | 45.0% |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1_1:62007345-62007364 | Msa0034120:CDS | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1_1:62007356-62007375 | Msa0034120:CDS | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1_1:62007363-62007382 | None:intergenic | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1_1:62008464-62008483 | Msa0034120:intron | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1_1:62008670-62008689 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1_1:62008773-62008792 | Msa0034120:intron | 45.0% | |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1_1:62008785-62008804 | Msa0034120:intron | 45.0% |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1_1:62008923-62008942 | None:intergenic | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1_1:62009105-62009124 | Msa0034120:intron | 45.0% | |
| CAATAGGTAGTACCTCTGGT+CGG | + | chr1_1:62009560-62009579 | None:intergenic | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1_1:62009564-62009583 | None:intergenic | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1_1:62009740-62009759 | Msa0034120:intron | 45.0% |
| CTCATCACCTGCATTGAATG+GGG | + | chr1_1:62009750-62009769 | None:intergenic | 45.0% | |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1_1:62009777-62009796 | None:intergenic | 45.0% | |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1_1:62009785-62009804 | Msa0034120:intron | 45.0% |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1_1:62009938-62009957 | Msa0034120:intron | 45.0% | |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1_1:62010052-62010071 | Msa0034120:intron | 45.0% |
| CCAGCAACCACAACCTTATT+AGG | + | chr1_1:62010094-62010113 | None:intergenic | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1_1:62010091-62010110 | Msa0034120:CDS | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1_1:62010104-62010123 | Msa0034120:CDS | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1_1:62010205-62010224 | Msa0034120:CDS | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1_1:62010206-62010225 | Msa0034120:CDS | 45.0% | |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1_1:62008053-62008072 | Msa0034120:intron | 5.0% |
| CTCTCTCTCTCTCTCTCTCA+TGG | - | chr1_1:62007104-62007123 | Msa0034120:three_prime_UTR | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1_1:62007158-62007177 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1_1:62007163-62007182 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1_1:62007171-62007190 | Msa0034120:three_prime_UTR | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1_1:62007393-62007412 | Msa0034120:CDS | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1_1:62007436-62007455 | Msa0034120:CDS | 50.0% | |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1_1:62007446-62007465 | None:intergenic | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1_1:62008477-62008496 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1_1:62008663-62008682 | Msa0034120:intron | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1_1:62008664-62008683 | Msa0034120:intron | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1_1:62008671-62008690 | Msa0034120:intron | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1_1:62008780-62008799 | None:intergenic | 50.0% | |
| !! | CGACCAGAGGTACTACCTAT+TGG | - | chr1_1:62009558-62009577 | Msa0034120:intron | 50.0% |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1_1:62010103-62010122 | Msa0034120:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1_1:62010121-62010140 | None:intergenic | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1_1:62010180-62010199 | Msa0034120:CDS | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1_1:62010201-62010220 | Msa0034120:CDS | 50.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1_1:62007173-62007192 | None:intergenic | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1_1:62007408-62007427 | Msa0034120:CDS | 55.0% | |
| CATCCCCAACGACGCATTTC+CGG | + | chr1_1:62007415-62007434 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1_1:62007424-62007443 | Msa0034120:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1_1:62007430-62007449 | Msa0034120:CDS | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1_1:62007443-62007462 | Msa0034120:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1_1:62007407-62007426 | Msa0034120:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1_1:62007409-62007428 | Msa0034120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62007086 | 62010543 | 62007086 | ID=Msa0034120;Name=Msa0034120 |
| chr1_1 | mRNA | 62007086 | 62010543 | 62007086 | ID=Msa0034120-mRNA-1;Parent=Msa0034120;Name=Msa0034120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=37|1|1|1|1|1|2|240|327 |
| chr1_1 | exon | 62007086 | 62007867 | 62007086 | ID=Msa0034120-mRNA-1:exon:19479;Parent=Msa0034120-mRNA-1 |
| chr1_1 | exon | 62010065 | 62010543 | 62010065 | ID=Msa0034120-mRNA-1:exon:19478;Parent=Msa0034120-mRNA-1 |
| chr1_1 | five_prime_UTR | 62010507 | 62010543 | 62010507 | ID=Msa0034120-mRNA-1:five_prime_utr;Parent=Msa0034120-mRNA-1 |
| chr1_1 | CDS | 62010065 | 62010506 | 62010065 | ID=Msa0034120-mRNA-1:cds;Parent=Msa0034120-mRNA-1 |
| chr1_1 | CDS | 62007326 | 62007867 | 62007326 | ID=Msa0034120-mRNA-1:cds;Parent=Msa0034120-mRNA-1 |
| chr1_1 | three_prime_UTR | 62007086 | 62007325 | 62007086 | ID=Msa0034120-mRNA-1:three_prime_utr;Parent=Msa0034120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
