Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460040 | XP_003591397.1 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460040 | G7ICX7 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034120 | Msa1460040 | 0.951068 | 4.447675e-109 | -8.615850e-47 |
| Msa0035340 | Msa1460040 | 0.811826 | 5.765790e-51 | -8.615850e-47 |
| Msa0067330 | Msa1460040 | 0.820823 | 5.594441e-53 | -8.615850e-47 |
| Msa0701220 | Msa1460040 | 0.801240 | 9.885748e-49 | -8.615850e-47 |
| Msa0795870 | Msa1460040 | 0.815438 | 9.245740e-52 | -8.615850e-47 |
| Msa0833650 | Msa1460040 | 0.822660 | 2.103462e-53 | -8.615850e-47 |
| Msa0128130 | Msa1460040 | 0.892339 | 1.738770e-74 | -8.615850e-47 |
| Msa0158860 | Msa1460040 | 0.833388 | 5.487787e-56 | -8.615850e-47 |
| Msa0174120 | Msa1460040 | 0.894717 | 1.896906e-75 | -8.615850e-47 |
| Msa1240770 | Msa1460040 | 0.804832 | 1.787560e-49 | -8.615850e-47 |
| Msa0369790 | Msa1460040 | 0.812596 | 3.915000e-51 | -8.615850e-47 |
| Msa0464000 | Msa1460040 | 0.814244 | 1.700840e-51 | -8.615850e-47 |
| Msa1132840 | Msa1460040 | 0.822014 | 2.971218e-53 | -8.615850e-47 |
| Msa1174230 | Msa1460040 | 0.801577 | 8.433420e-49 | -8.615850e-47 |
| Msa0509550 | Msa1460040 | 0.802720 | 4.907110e-49 | -8.615850e-47 |
| Msa0580370 | Msa1460040 | 0.823506 | 1.335277e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460040 | MtrunA17_Chr1g0194641 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| Msa1460040 | MtrunA17_Chr7g0221421 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 8.91e-31 | 119 |
| Msa1460040 | MtrunA17_Chr1g0160321 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.42e-28 | 113 |
| Msa1460040 | MtrunA17_Chr3g0113571 | 31.227 | 269 | 164 | 10 | 55 | 307 | 6 | 269 | 1.35e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460040 | AT2G16760.1 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 4.01e-142 | 405 |
| Msa1460040 | AT2G47370.1 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.74e-134 | 385 |
| Msa1460040 | AT2G47370.2 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.53e-108 | 317 |
| Msa1460040 | AT5G28660.1 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.12e-45 | 153 |
| Msa1460040 | AT2G01410.1 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.20e-25 | 103 |
Find 91 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAATCTGTTTAGGTTTA+TGG | 0.005941 | tig0040624:-6696 | None:intergenic |
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | tig0040624:+2233 | Msa1460040:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | tig0040624:+6296 | Msa1460040:CDS |
| AAACAGATTTGGTTAAAATT+TGG | 0.186616 | tig0040624:+6706 | Msa1460040:three_prime_UTR |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | tig0040624:-1843 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | tig0040624:-6470 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | tig0040624:+6425 | Msa1460040:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | tig0040624:+6407 | Msa1460040:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | tig0040624:+6470 | Msa1460040:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | tig0040624:-2108 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | tig0040624:+6506 | Msa1460040:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | tig0040624:+6457 | Msa1460040:CDS |
| GATAAACTCTGGTAGAAATT+TGG | 0.292992 | tig0040624:+6785 | Msa1460040:three_prime_UTR |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | tig0040624:+6482 | Msa1460040:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | tig0040624:+6213 | Msa1460040:CDS |
| GTTAAAATTTGGTGTTCCTT+TGG | 0.311459 | tig0040624:+6717 | Msa1460040:three_prime_UTR |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | tig0040624:-6616 | None:intergenic |
| TCCATAAACCTAAACAGATT+TGG | 0.320624 | tig0040624:+6695 | Msa1460040:three_prime_UTR |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | tig0040624:+6204 | Msa1460040:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | tig0040624:+6400 | Msa1460040:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | tig0040624:+6617 | Msa1460040:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | tig0040624:+2104 | Msa1460040:CDS |
| TCAGTTGTTGCAAAATTCTC+AGG | 0.366423 | tig0040624:+6542 | Msa1460040:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | tig0040624:+6212 | Msa1460040:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | tig0040624:-6310 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | tig0040624:+6559 | Msa1460040:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | tig0040624:+6221 | Msa1460040:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | tig0040624:-6622 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | tig0040624:-6332 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | tig0040624:+6222 | Msa1460040:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.453388 | tig0040624:+2161 | Msa1460040:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | tig0040624:+2132 | Msa1460040:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | tig0040624:+6510 | Msa1460040:CDS |
| ATGAACAAGCCATGAGAGAG+AGG | 0.480971 | tig0040624:-1809 | None:intergenic |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | tig0040624:-2056 | None:intergenic |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | tig0040624:+2052 | Msa1460040:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | tig0040624:+6493 | Msa1460040:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | tig0040624:+2103 | Msa1460040:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | tig0040624:-6434 | None:intergenic |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | tig0040624:+6270 | Msa1460040:CDS |
| GGTATAATGCTCAATGTCAA+TGG | 0.522644 | tig0040624:+6854 | Msa1460040:three_prime_UTR |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | tig0040624:+6382 | Msa1460040:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | tig0040624:+6607 | Msa1460040:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | tig0040624:+6410 | Msa1460040:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | tig0040624:-1877 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | tig0040624:+6483 | Msa1460040:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | tig0040624:+2089 | Msa1460040:CDS |
| ACACTCCTCCCTCTCTCTCA+TGG | 0.532798 | tig0040624:+1800 | None:intergenic |
| CAGTTGTTGCAAAATTCTCA+GGG | 0.533397 | tig0040624:+6543 | Msa1460040:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | tig0040624:+1956 | Msa1460040:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | tig0040624:-1883 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | tig0040624:+6317 | Msa1460040:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | tig0040624:-1918 | None:intergenic |
| CTAGAATCCGATTCCTACTC+CGG | 0.544388 | tig0040624:-2139 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | tig0040624:+6463 | Msa1460040:CDS |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | tig0040624:+2079 | Msa1460040:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | tig0040624:-2232 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | tig0040624:+6287 | Msa1460040:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | tig0040624:-6153 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | tig0040624:-6566 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | tig0040624:+6283 | Msa1460040:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | tig0040624:-1856 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | tig0040624:-6497 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | tig0040624:+6376 | Msa1460040:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | tig0040624:+6584 | Msa1460040:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | tig0040624:+1867 | Msa1460040:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | tig0040624:+6377 | Msa1460040:CDS |
| TAATGCTCAATGTCAATGGT+AGG | 0.584520 | tig0040624:+6858 | Msa1460040:three_prime_UTR |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | tig0040624:+6585 | Msa1460040:CDS |
| ACAAGCCATGAGAGAGAGGG+AGG | 0.592092 | tig0040624:-1805 | None:intergenic |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | tig0040624:+2120 | Msa1460040:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | tig0040624:+6611 | Msa1460040:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | tig0040624:+2022 | Msa1460040:CDS |
| CTATCTAGAAAGATAAACTC+TGG | 0.603512 | tig0040624:+6774 | Msa1460040:three_prime_UTR |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | tig0040624:+6649 | Msa1460040:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | tig0040624:+2085 | Msa1460040:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | tig0040624:+1930 | Msa1460040:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | tig0040624:+6580 | Msa1460040:CDS |
| TGAACAAGCCATGAGAGAGA+GGG | 0.619703 | tig0040624:-1808 | None:intergenic |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | tig0040624:+6214 | Msa1460040:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | tig0040624:-1882 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | tig0040624:+2105 | Msa1460040:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | tig0040624:+2126 | Msa1460040:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | tig0040624:-6331 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | tig0040624:+6164 | Msa1460040:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | tig0040624:-1866 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | tig0040624:+6411 | Msa1460040:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | tig0040624:-1851 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | tig0040624:-1919 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | tig0040624:-6328 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | tig0040624:+2204 | Msa1460040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTTTTTTATATAAATT+GGG | - | tig0040624:2406-2425 | None:intergenic | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | - | tig0040624:2407-2426 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+GGG | - | tig0040624:2719-2738 | None:intergenic | 10.0% |
| !!! | TTAAATTATAAGTCTTTTTT+TGG | - | tig0040624:2720-2739 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGAAAAAATTC+TGG | + | tig0040624:3030-3049 | Msa1460040:intron | 10.0% |
| !! | GAAAAAATATTAAAAAAATC+TGG | + | tig0040624:3109-3128 | Msa1460040:intron | 10.0% |
| !! | TTAAAAAAACAAAAAAATTC+TGG | + | tig0040624:3246-3265 | Msa1460040:intron | 10.0% |
| !! | AAAAAAATATTAAAAACTTC+TGG | + | tig0040624:3367-3386 | Msa1460040:intron | 10.0% |
| !! | TATCTAAAAAATTAAAATTC+TGG | + | tig0040624:3487-3506 | Msa1460040:intron | 10.0% |
| !!! | GAAAAATAATGAAAAAATTT+TGG | - | tig0040624:3942-3961 | None:intergenic | 10.0% |
| !! | TTTATAGTATTAAAAAATTC+AGG | - | tig0040624:4303-4322 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | - | tig0040624:4383-4402 | None:intergenic | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | + | tig0040624:5223-5242 | Msa1460040:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | + | tig0040624:5224-5243 | Msa1460040:intron | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | - | tig0040624:5639-5658 | None:intergenic | 10.0% |
| !! | CAATATTAATTTCTAATTTA+TGG | + | tig0040624:5993-6012 | Msa1460040:intron | 10.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | + | tig0040624:2411-2430 | Msa1460040:intron | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | + | tig0040624:2723-2742 | Msa1460040:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | + | tig0040624:2724-2743 | Msa1460040:intron | 15.0% |
| !!! | ATATTTAAGCCTATTTATTT+TGG | - | tig0040624:2807-2826 | None:intergenic | 15.0% |
| !! | AAAATAAATAGGCTTAAATA+TGG | + | tig0040624:2806-2825 | Msa1460040:intron | 15.0% |
| !!! | CAAATTTTTTTTATAGCTTT+TGG | + | tig0040624:2872-2891 | Msa1460040:intron | 15.0% |
| !!! | CAAAATTTTTTTATAGCTTT+TGG | + | tig0040624:2933-2952 | Msa1460040:intron | 15.0% |
| !! | AAAATTATAAAAGATTTGCA+GGG | - | tig0040624:4324-4343 | None:intergenic | 15.0% |
| !! | AAAAATTATAAAAGATTTGC+AGG | - | tig0040624:4323-4342 | None:intergenic | 15.0% |
| !!! | ATTTTCATTAGTATTTTTTC+CGG | + | tig0040624:3729-3748 | Msa1460040:intron | 15.0% |
| !!! | ATTTTTGTGTATTTATAAAG+CGG | + | tig0040624:3754-3773 | Msa1460040:intron | 15.0% |
| !! | AGGAAAAAATTAAAAAAATC+TGG | - | tig0040624:4017-4036 | None:intergenic | 15.0% |
| !! | AAAAATTATAAAAGATTTGC+AGG | + | tig0040624:4323-4342 | Msa1460040:intron | 15.0% |
| !! | AAAATTATAAAAGATTTGCA+GGG | + | tig0040624:4324-4343 | Msa1460040:intron | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | + | tig0040624:4384-4403 | Msa1460040:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | + | tig0040624:4385-4404 | Msa1460040:intron | 15.0% |
| !!! | CAAAAAATTTTTATAGCTTT+TGG | - | tig0040624:4444-4463 | None:intergenic | 15.0% |
| !!! | TTTGTAGATCTTTTTTTTTT+TGG | + | tig0040624:4729-4748 | Msa1460040:intron | 15.0% |
| !!! | CTCATTTACTTTTTTTTTTT+TGG | - | tig0040624:4950-4969 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | - | tig0040624:5614-5633 | None:intergenic | 15.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | - | tig0040624:5722-5741 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | - | tig0040624:5806-5825 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | - | tig0040624:5806-5825 | None:intergenic | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | - | tig0040624:6097-6116 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | + | tig0040624:6101-6120 | Msa1460040:intron | 15.0% |
| !! | CCTAAAAACATGAATATATT+CGG | - | tig0040624:2355-2374 | None:intergenic | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | + | tig0040624:2353-2372 | Msa1460040:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | - | tig0040624:2402-2421 | None:intergenic | 20.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | - | tig0040624:2523-2542 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | - | tig0040624:2524-2543 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | + | tig0040624:2614-2633 | Msa1460040:intron | 20.0% |
| !! | AACTTCTTACCAAAATAAAT+AGG | + | tig0040624:2795-2814 | Msa1460040:intron | 20.0% |
| !! | AGCTATAAAAAAAATTTGCA+GGG | - | tig0040624:2870-2889 | None:intergenic | 20.0% |
| !! | AAGCTATAAAAAAAATTTGC+AGG | - | tig0040624:2871-2890 | None:intergenic | 20.0% |
| !!! | AGCTATAAAAAAATTTTGCA+GGG | - | tig0040624:2931-2950 | None:intergenic | 20.0% |
| !!! | AAGCTATAAAAAAATTTTGC+AGG | - | tig0040624:2932-2951 | None:intergenic | 20.0% |
| !!! | TTCTGGAAAATTGAAAAAAA+CGG | + | tig0040624:3384-3403 | Msa1460040:intron | 20.0% |
| !! | CGAAAATAAAAATGAAATTC+TGG | + | tig0040624:3539-3558 | Msa1460040:intron | 20.0% |
| !!! | AGTATTTCTCAAAAATTTTC+CGG | + | tig0040624:3611-3630 | Msa1460040:intron | 20.0% |
| !! | TATAAATACACAAAAATTCC+CGG | - | tig0040624:3633-3652 | None:intergenic | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | + | tig0040624:3645-3664 | Msa1460040:intron | 20.0% |
| !!! | TTTTCATTAGTATTTTTTCC+GGG | + | tig0040624:3730-3749 | Msa1460040:intron | 20.0% |
| !! | TATAAATACACAAAAATTCC+CGG | - | tig0040624:3633-3652 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTATTTATAAAGC+GGG | + | tig0040624:3755-3774 | Msa1460040:intron | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | + | tig0040624:3645-3664 | Msa1460040:intron | 20.0% |
| !!! | AAGCTATAAAAATTTTTTGC+AGG | + | tig0040624:4445-4464 | Msa1460040:intron | 20.0% |
| !!! | AGCTATAAAAATTTTTTGCA+GGG | + | tig0040624:4446-4465 | Msa1460040:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | + | tig0040624:5533-5552 | Msa1460040:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | + | tig0040624:5804-5823 | Msa1460040:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | + | tig0040624:5804-5823 | Msa1460040:intron | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | + | tig0040624:6006-6025 | Msa1460040:intron | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | + | tig0040624:6204-6223 | Msa1460040:CDS | 20.0% |
| !!! | AATTTTAACCAAATCTGTTT+AGG | - | tig0040624:6706-6725 | None:intergenic | 20.0% |
| !!! | AAACAGATTTGGTTAAAATT+TGG | + | tig0040624:6706-6725 | Msa1460040:three_prime_UTR | 20.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | - | tig0040624:1995-2014 | None:intergenic | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | + | tig0040624:1996-2015 | Msa1460040:CDS | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | - | tig0040624:2260-2279 | None:intergenic | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | + | tig0040624:2352-2371 | Msa1460040:intron | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | - | tig0040624:2476-2495 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | tig0040624:2681-2700 | Msa1460040:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | + | tig0040624:2686-2705 | Msa1460040:intron | 25.0% |
| !! | AATAGGCTTAAATATGGTTT+TGG | + | tig0040624:2812-2831 | Msa1460040:intron | 25.0% |
| ! | TGAAAAAAACGGAAAAAATC+TGG | + | tig0040624:3395-3414 | Msa1460040:intron | 25.0% |
| !! | GTATTTCTCAAAAATTTTCC+GGG | + | tig0040624:3612-3631 | Msa1460040:intron | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | + | tig0040624:3644-3663 | Msa1460040:intron | 25.0% |
| !!! | CATATTTTTTCCCTTATTCT+CGG | - | tig0040624:3658-3677 | None:intergenic | 25.0% |
| ! | ATACATAAAAAACCTAAGCT+CGG | - | tig0040624:3693-3712 | None:intergenic | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | + | tig0040624:3644-3663 | Msa1460040:intron | 25.0% |
| !!! | TGTATTTTTTCCCTTATTCT+CGG | - | tig0040624:3801-3820 | None:intergenic | 25.0% |
| !! | ATGTCGAAAATTTGAAATTC+TGG | - | tig0040624:3891-3910 | None:intergenic | 25.0% |
| !! | TTGCAAAAATAAGTCAGTTT+TGG | - | tig0040624:4479-4498 | None:intergenic | 25.0% |
| !!! | AAAACTGACTTATTTTTGCA+AGG | + | tig0040624:4478-4497 | Msa1460040:intron | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | + | tig0040624:4557-4576 | Msa1460040:intron | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | - | tig0040624:4880-4899 | None:intergenic | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | + | tig0040624:4971-4990 | Msa1460040:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | - | tig0040624:4975-4994 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | - | tig0040624:5012-5031 | None:intergenic | 25.0% |
| !! | TATGATTGCTTTGTTATGTT+TGG | + | tig0040624:5125-5144 | Msa1460040:intron | 25.0% |
| !! | ATGATTGCTTTGTTATGTTT+GGG | + | tig0040624:5126-5145 | Msa1460040:intron | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | - | tig0040624:5429-5448 | None:intergenic | 25.0% |
| ! | TTGGAACAGTTAACAAAATA+TGG | + | tig0040624:5552-5571 | Msa1460040:intron | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | - | tig0040624:5719-5738 | None:intergenic | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | + | tig0040624:5916-5935 | Msa1460040:intron | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | + | tig0040624:6005-6024 | Msa1460040:intron | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | + | tig0040624:6213-6232 | Msa1460040:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | + | tig0040624:6214-6233 | Msa1460040:CDS | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | - | tig0040624:6334-6353 | None:intergenic | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | - | tig0040624:6335-6354 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | + | tig0040624:6347-6366 | Msa1460040:CDS | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | + | tig0040624:6377-6396 | Msa1460040:CDS | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | + | tig0040624:6407-6426 | Msa1460040:CDS | 25.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | + | tig0040624:6410-6429 | Msa1460040:CDS | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | + | tig0040624:6411-6430 | Msa1460040:CDS | 25.0% |
| !!! | TTCCTTTGGTTTTTTATGTT+TGG | + | tig0040624:6731-6750 | Msa1460040:three_prime_UTR | 25.0% |
| ! | AACCAAACATAAAAAACCAA+AGG | - | tig0040624:6736-6755 | None:intergenic | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | - | tig0040624:1992-2011 | None:intergenic | 30.0% | |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | + | tig0040624:1999-2018 | Msa1460040:CDS | 30.0% |
| TATCAACTGAGCTAAGTTTA+CGG | - | tig0040624:2653-2672 | None:intergenic | 30.0% | |
| !!! | AAAACTTGCCTATTTTTGCA+GGG | - | tig0040624:2960-2979 | None:intergenic | 30.0% |
| TGTATTTATAAACCGAGCTT+AGG | + | tig0040624:3678-3697 | Msa1460040:intron | 30.0% | |
| TTAGTATATATGTCGAGCTT+AGG | - | tig0040624:3834-3853 | None:intergenic | 30.0% | |
| !!! | AAAACTGGTCTATTTTTGCA+GGG | + | tig0040624:4417-4436 | Msa1460040:intron | 30.0% |
| AAATACGTGTCGTGATATAT+CGG | + | tig0040624:4541-4560 | Msa1460040:intron | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | + | tig0040624:4618-4637 | Msa1460040:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | - | tig0040624:4667-4686 | None:intergenic | 30.0% | |
| !! | GAGGTGATTATTGTTTTACA+TGG | + | tig0040624:4667-4686 | Msa1460040:intron | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | - | tig0040624:4905-4924 | None:intergenic | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | + | tig0040624:5327-5346 | Msa1460040:intron | 30.0% |
| ATGTGAAAACTGAGCAATTA+AGG | - | tig0040624:5447-5466 | None:intergenic | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | - | tig0040624:5502-5521 | None:intergenic | 30.0% |
| TTGCTTATAAATGTGATCAG+AGG | + | tig0040624:5880-5899 | Msa1460040:intron | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | + | tig0040624:5881-5900 | Msa1460040:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | - | tig0040624:5924-5943 | None:intergenic | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | + | tig0040624:5924-5943 | Msa1460040:intron | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | + | tig0040624:6212-6231 | Msa1460040:CDS | 30.0% | |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | - | tig0040624:6271-6290 | None:intergenic | 30.0% |
| ! | GTTCAAGATTGATTTAACAC+AGG | + | tig0040624:6376-6395 | Msa1460040:CDS | 30.0% |
| AGAGGAAGTGAAGATAATTA+AGG | + | tig0040624:6400-6419 | Msa1460040:CDS | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | - | tig0040624:6437-6456 | None:intergenic | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | + | tig0040624:6457-6476 | Msa1460040:CDS | 30.0% | |
| ! | CAATAGCATGCTTCTTTTTA+GGG | - | tig0040624:6646-6665 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | - | tig0040624:6647-6666 | None:intergenic | 30.0% |
| TCCATAAACCTAAACAGATT+TGG | + | tig0040624:6695-6714 | Msa1460040:three_prime_UTR | 30.0% | |
| ! | ACCAAATCTGTTTAGGTTTA+TGG | - | tig0040624:6699-6718 | None:intergenic | 30.0% |
| !! | GTTAAAATTTGGTGTTCCTT+TGG | + | tig0040624:6717-6736 | Msa1460040:three_prime_UTR | 30.0% |
| CTATCTAGAAAGATAAACTC+TGG | + | tig0040624:6774-6793 | Msa1460040:three_prime_UTR | 30.0% | |
| GATAAACTCTGGTAGAAATT+TGG | + | tig0040624:6785-6804 | Msa1460040:three_prime_UTR | 30.0% | |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | + | tig0040624:1955-1974 | Msa1460040:CDS | 35.0% |
| TTTCAGAGAATGTGCAAAGT+GGG | + | tig0040624:1956-1975 | Msa1460040:CDS | 35.0% | |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | + | tig0040624:2005-2024 | Msa1460040:CDS | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | + | tig0040624:2079-2098 | Msa1460040:CDS | 35.0% |
| TTGCTTATGATCTTTCTACG+TGG | + | tig0040624:2204-2223 | Msa1460040:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | - | tig0040624:2235-2254 | None:intergenic | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | + | tig0040624:2233-2252 | Msa1460040:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | + | tig0040624:2424-2443 | Msa1460040:intron | 35.0% | |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | + | tig0040624:2430-2449 | Msa1460040:intron | 35.0% |
| ATCAACTGAGCTAAGTTTAC+GGG | - | tig0040624:2652-2671 | None:intergenic | 35.0% | |
| ! | AAAACTGACCTATTTTCGCA+GGG | - | tig0040624:2899-2918 | None:intergenic | 35.0% |
| !!! | CAAAACTTGCCTATTTTTGC+AGG | - | tig0040624:2961-2980 | None:intergenic | 35.0% |
| !! | AAAACTGGCATAGTTTTGCA+GGG | + | tig0040624:4356-4375 | Msa1460040:intron | 35.0% |
| ! | CTGCAAAAATAGACCAGTTT+TGG | - | tig0040624:4418-4437 | None:intergenic | 35.0% |
| !!! | CAAAACTGGTCTATTTTTGC+AGG | + | tig0040624:4416-4435 | Msa1460040:intron | 35.0% |
| TGAAAACGTGAAGACTAACA+TGG | + | tig0040624:4834-4853 | Msa1460040:intron | 35.0% | |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | - | tig0040624:4900-4919 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | + | tig0040624:5248-5267 | Msa1460040:intron | 35.0% |
| GCATGGTGTGCATATTATAT+GGG | - | tig0040624:5289-5308 | None:intergenic | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | - | tig0040624:5290-5309 | None:intergenic | 35.0% | |
| AAAGAGAACAATAAACGTGC+AGG | - | tig0040624:5316-5335 | None:intergenic | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | - | tig0040624:5402-5421 | None:intergenic | 35.0% | |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | + | tig0040624:5965-5984 | Msa1460040:intron | 35.0% |
| CTATATTGAAATGTGCTAGC+TGG | + | tig0040624:6045-6064 | Msa1460040:intron | 35.0% | |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | - | tig0040624:6272-6291 | None:intergenic | 35.0% |
| CACTATTCACTCCAAAAGAA+TGG | + | tig0040624:6270-6289 | Msa1460040:CDS | 35.0% | |
| GGTGGTAAACAATTCCATTA+AGG | - | tig0040624:6313-6332 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | + | tig0040624:6463-6482 | Msa1460040:CDS | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | + | tig0040624:6506-6525 | Msa1460040:CDS | 35.0% | |
| TCAGTTGTTGCAAAATTCTC+AGG | + | tig0040624:6542-6561 | Msa1460040:CDS | 35.0% | |
| CAGTTGTTGCAAAATTCTCA+GGG | + | tig0040624:6543-6562 | Msa1460040:CDS | 35.0% | |
| ! | GAAAGTGTACCTAAACCATA+TGG | + | tig0040624:6607-6626 | Msa1460040:CDS | 35.0% |
| CAATTCCAACCATATGGTTT+AGG | - | tig0040624:6619-6638 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | + | tig0040624:6617-6636 | Msa1460040:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | + | tig0040624:6649-6668 | Msa1460040:CDS | 35.0% |
| TATACCGACAGAGAAAAACA+AGG | - | tig0040624:6840-6859 | None:intergenic | 35.0% | |
| GGTATAATGCTCAATGTCAA+TGG | + | tig0040624:6854-6873 | Msa1460040:three_prime_UTR | 35.0% | |
| TAATGCTCAATGTCAATGGT+AGG | + | tig0040624:6858-6877 | Msa1460040:three_prime_UTR | 35.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | - | tig0040624:1846-1865 | None:intergenic | 40.0% |
| AGAGAGATGATTATGCCGAT+GGG | - | tig0040624:1885-1904 | None:intergenic | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | - | tig0040624:1886-1905 | None:intergenic | 40.0% | |
| ! | TAGTGATAGACGTGAGTTGA+GGG | - | tig0040624:1921-1940 | None:intergenic | 40.0% |
| ATAGTGATAGACGTGAGTTG+AGG | - | tig0040624:1922-1941 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | + | tig0040624:1930-1949 | Msa1460040:CDS | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | + | tig0040624:2022-2041 | Msa1460040:CDS | 40.0% | |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | - | tig0040624:2039-2058 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | + | tig0040624:2085-2104 | Msa1460040:CDS | 40.0% |
| GTTGTAAACGCTGATGTTAG+AGG | + | tig0040624:2161-2180 | Msa1460040:CDS | 40.0% | |
| TGCAGGGACTAAAACCAAAA+CGG | - | tig0040624:4401-4420 | None:intergenic | 40.0% | |
| ! | CAAAACTGACCTATTTTCGC+AGG | - | tig0040624:2900-2919 | None:intergenic | 40.0% |
| ! | CTGCGAAAATAGGTCAGTTT+TGG | + | tig0040624:2898-2917 | Msa1460040:intron | 40.0% |
| ! | CTTTTGGTCCCTGCAAAAAT+AGG | + | tig0040624:2949-2968 | Msa1460040:intron | 40.0% |
| !! | CAAAACTGGCATAGTTTTGC+AGG | + | tig0040624:4355-4374 | Msa1460040:intron | 40.0% |
| AAGTGTGTGTAAGTTTCCTG+AGG | + | tig0040624:4648-4667 | Msa1460040:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | - | tig0040624:5067-5086 | None:intergenic | 40.0% | |
| GTTATGTTTGGGCGTAGTAA+AGG | + | tig0040624:5137-5156 | Msa1460040:intron | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | - | tig0040624:5362-5381 | None:intergenic | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | + | tig0040624:5363-5382 | Msa1460040:intron | 40.0% | |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | - | tig0040624:5955-5974 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | + | tig0040624:5952-5971 | Msa1460040:intron | 40.0% |
| TCTCATCACCTGCATTGAAT+GGG | - | tig0040624:6130-6149 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | - | tig0040624:6131-6150 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | + | tig0040624:6221-6240 | Msa1460040:CDS | 40.0% | |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | + | tig0040624:6222-6241 | Msa1460040:CDS | 40.0% |
| CTATTAAGAATCCATCTGGG+TGG | - | tig0040624:6331-6350 | None:intergenic | 40.0% | |
| ! | GATTGATTTAACACAGGGAG+AGG | + | tig0040624:6382-6401 | Msa1460040:CDS | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | + | tig0040624:6425-6444 | Msa1460040:CDS | 40.0% |
| AAATCCTTCAGGGAGATTAG+TGG | + | tig0040624:6493-6512 | Msa1460040:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | + | tig0040624:6510-6529 | Msa1460040:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | - | tig0040624:6569-6588 | None:intergenic | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | + | tig0040624:6611-6630 | Msa1460040:CDS | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | - | tig0040624:6625-6644 | None:intergenic | 40.0% | |
| !!! | CAGTCCTTGTTTTTCTCTGT+CGG | + | tig0040624:6833-6852 | Msa1460040:three_prime_UTR | 40.0% |
| TGAACAAGCCATGAGAGAGA+GGG | - | tig0040624:1811-1830 | None:intergenic | 45.0% | |
| ATGAACAAGCCATGAGAGAG+AGG | - | tig0040624:1812-1831 | None:intergenic | 45.0% | |
| GATGATTATGCCGATGGGTA+TGG | - | tig0040624:1880-1899 | None:intergenic | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | + | tig0040624:2040-2059 | Msa1460040:CDS | 45.0% | |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | - | tig0040624:2044-2063 | None:intergenic | 45.0% |
| CCGGAAAAAGAATCACCAGA+GGG | + | tig0040624:2041-2060 | Msa1460040:CDS | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | + | tig0040624:2052-2071 | Msa1460040:CDS | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | - | tig0040624:2059-2078 | None:intergenic | 45.0% | |
| CTAGAATCCGATTCCTACTC+CGG | - | tig0040624:2142-2161 | None:intergenic | 45.0% | |
| !! | GGTTTTGGTCCCTGCAAAAT+AGG | + | tig0040624:2827-2846 | Msa1460040:intron | 45.0% |
| ! | CAAAACGGGCCTATTTTGCA+GGG | - | tig0040624:2839-2858 | None:intergenic | 45.0% |
| GCAGGGACTAAAACCAAAAC+GGG | - | tig0040624:4402-4421 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCCCTGCGAAAAT+AGG | + | tig0040624:2888-2907 | Msa1460040:intron | 45.0% |
| GCAGGGACTAAAAGCAAAAC+TGG | + | tig0040624:4341-4360 | Msa1460040:intron | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | tig0040624:4402-4421 | Msa1460040:intron | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | + | tig0040624:4848-4867 | Msa1460040:intron | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | - | tig0040624:5054-5073 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | + | tig0040624:5156-5175 | Msa1460040:intron | 45.0% | |
| !! | ATGAAGAACGGCATCGACAA+AGG | + | tig0040624:5168-5187 | Msa1460040:intron | 45.0% |
| ATAAACGTGCAGGTCATGCA+TGG | - | tig0040624:5306-5325 | None:intergenic | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | + | tig0040624:5488-5507 | Msa1460040:intron | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | - | tig0040624:5943-5962 | None:intergenic | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | + | tig0040624:6119-6138 | Msa1460040:intron | 45.0% |
| CTCATCACCTGCATTGAATG+GGG | - | tig0040624:6129-6148 | None:intergenic | 45.0% | |
| AACTGCAACATCGTCTGCAA+AGG | - | tig0040624:6156-6175 | None:intergenic | 45.0% | |
| ! | GATGTTGCAGTTGATGCAGA+AGG | + | tig0040624:6164-6183 | Msa1460040:CDS | 45.0% |
| GGAATTGTTTACCACCCAGA+TGG | + | tig0040624:6317-6336 | Msa1460040:CDS | 45.0% | |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | + | tig0040624:6431-6450 | Msa1460040:CDS | 45.0% |
| CCAGCAACCACAACCTTATT+AGG | - | tig0040624:6473-6492 | None:intergenic | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | + | tig0040624:6470-6489 | Msa1460040:CDS | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | + | tig0040624:6483-6502 | Msa1460040:CDS | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | + | tig0040624:6584-6603 | Msa1460040:CDS | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | + | tig0040624:6585-6604 | Msa1460040:CDS | 45.0% | |
| !!! | TATATTAATAATTTTATGTT+AGG | + | tig0040624:2751-2770 | Msa1460040:intron | 5.0% |
| !! | TAAAAAAATTAAAAAAATTC+TGG | + | tig0040624:3061-3080 | Msa1460040:intron | 5.0% |
| !! | TAAAAAAATAAAAAAAATTC+TGG | + | tig0040624:3148-3167 | Msa1460040:intron | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | tig0040624:3197-3216 | Msa1460040:intron | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | tig0040624:3197-3216 | Msa1460040:intron | 5.0% |
| !! | AAATGAAAAAAATTAAAAAA+AGG | - | tig0040624:4037-4056 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | tig0040624:3197-3216 | None:intergenic | 5.0% |
| !!! | GAAAAAATATTAAAAAATTT+TGG | - | tig0040624:4120-4139 | None:intergenic | 5.0% |
| !!! | TTAAAAAAATTTTAAAATTC+TGG | - | tig0040624:4167-4186 | None:intergenic | 5.0% |
| !! | TAAAAAAATTAAAAAAATTC+TGG | - | tig0040624:3061-3080 | None:intergenic | 5.0% |
| TGAAGAGGAAGAGAATGGCG+AGG | - | tig0040624:1854-1873 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | - | tig0040624:1859-1878 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | + | tig0040624:1867-1886 | Msa1460040:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | + | tig0040624:2089-2108 | Msa1460040:CDS | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | + | tig0040624:2132-2151 | Msa1460040:CDS | 50.0% | |
| ! | CCAAAACGGGCCTATTTTGC+AGG | - | tig0040624:2840-2859 | None:intergenic | 50.0% |
| ! | CCTGCAAAATAGGCCCGTTT+TGG | + | tig0040624:2837-2856 | Msa1460040:intron | 50.0% |
| TCGGACTCAACCATGTAGCT+TGG | - | tig0040624:4861-4880 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | + | tig0040624:5047-5066 | Msa1460040:intron | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | + | tig0040624:5048-5067 | Msa1460040:intron | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | + | tig0040624:5055-5074 | Msa1460040:intron | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | - | tig0040624:5163-5182 | None:intergenic | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | + | tig0040624:5937-5956 | Msa1460040:intron | 50.0% |
| GTGGTTGCTGGAAATCCTTC+AGG | + | tig0040624:6482-6501 | Msa1460040:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | - | tig0040624:6500-6519 | None:intergenic | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | + | tig0040624:6559-6578 | Msa1460040:CDS | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | + | tig0040624:6580-6599 | Msa1460040:CDS | 50.0% | |
| ACAAGCCATGAGAGAGAGGG+AGG | - | tig0040624:1808-1827 | None:intergenic | 55.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | - | tig0040624:1869-1888 | None:intergenic | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | + | tig0040624:2104-2123 | Msa1460040:CDS | 55.0% | |
| CATCCCCAACGACGCATTTC+CGG | - | tig0040624:2111-2130 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | + | tig0040624:2120-2139 | Msa1460040:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | + | tig0040624:2126-2145 | Msa1460040:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | + | tig0040624:2103-2122 | Msa1460040:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | + | tig0040624:2105-2124 | Msa1460040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040624 | gene | 1801 | 6922 | 1801 | ID=Msa1460040;Name=Msa1460040 |
| tig0040624 | mRNA | 1801 | 6922 | 1801 | ID=Msa1460040-mRNA-1;Parent=Msa1460040;Name=Msa1460040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=18|1|1|1|1|1|2|240|327 |
| tig0040624 | exon | 1801 | 2260 | 1801 | ID=Msa1460040-mRNA-1:exon:22537;Parent=Msa1460040-mRNA-1 |
| tig0040624 | exon | 6141 | 6922 | 6141 | ID=Msa1460040-mRNA-1:exon:22538;Parent=Msa1460040-mRNA-1 |
| tig0040624 | five_prime_UTR | 1801 | 1818 | 1801 | ID=Msa1460040-mRNA-1:five_prime_utr;Parent=Msa1460040-mRNA-1 |
| tig0040624 | CDS | 1819 | 2260 | 1819 | ID=Msa1460040-mRNA-1:cds;Parent=Msa1460040-mRNA-1 |
| tig0040624 | CDS | 6141 | 6682 | 6141 | ID=Msa1460040-mRNA-1:cds;Parent=Msa1460040-mRNA-1 |
| tig0040624 | three_prime_UTR | 6683 | 6922 | 6683 | ID=Msa1460040-mRNA-1:three_prime_utr;Parent=Msa1460040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
