Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128850 | XP_003591515.1 | 93.019 | 530 | 16 | 1 | 1 | 509 | 1 | 530 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128850 | sp|O22252|MHX_ARATH | 67.235 | 528 | 143 | 5 | 9 | 509 | 15 | 539 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128850 | G7IF47 | 93.019 | 530 | 16 | 1 | 1 | 509 | 1 | 530 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0128850 | Msa1379740 | 0.844594 | 6.862030e-59 | -8.615850e-47 |
| Msa0128850 | Msa1464150 | 0.804725 | 1.881997e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128850 | MtrunA17_Chr1g0195461 | 93.019 | 530 | 16 | 1 | 1 | 509 | 1 | 530 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128850 | AT2G47600.1 | 67.235 | 528 | 143 | 5 | 9 | 509 | 15 | 539 | 0.0 | 721 |
Find 151 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAACTGATCTGAAATTT+TGG | 0.162293 | 1_3:-58697829 | Msa0128850:five_prime_UTR |
| ATACATATTTGCTTACTATT+TGG | 0.181267 | 1_3:-58695289 | Msa0128850:CDS |
| ACTTTGGAAACTATTGTTTA+TGG | 0.190902 | 1_3:-58691448 | Msa0128850:three_prime_UTR |
| GGTCTGTATAATACAAATTA+AGG | 0.196530 | 1_3:+58691700 | None:intergenic |
| CTATCTTCTCTTAAGGTTTC+CGG | 0.198106 | 1_3:-58691760 | Msa0128850:CDS |
| ATCCCGGTTCTTTCAATCTA+TGG | 0.213459 | 1_3:-58697603 | Msa0128850:CDS |
| GTATGTAATACAATAAAATA+AGG | 0.265963 | 1_3:+58691555 | None:intergenic |
| TTATTAAACATGAGAAAGTT+TGG | 0.284616 | 1_3:-58697520 | Msa0128850:CDS |
| GCAATGACGGTGTTTGTTGC+TGG | 0.288678 | 1_3:+58698499 | None:intergenic |
| TATTGCAGATATTAGTCTTT+TGG | 0.293432 | 1_3:-58697489 | Msa0128850:CDS |
| CAATTGCAAACATCACTTGC+AGG | 0.310992 | 1_3:-58693515 | Msa0128850:intron |
| ATAACCTCAGCTTTAGTAAC+AGG | 0.311261 | 1_3:+58697539 | None:intergenic |
| TGTTGTACTATCTTCTCTTA+AGG | 0.316583 | 1_3:-58691767 | Msa0128850:CDS |
| CAAGGAAGAGTGATGACTTC+TGG | 0.317220 | 1_3:+58691628 | None:intergenic |
| TTCCTTGGTCCCTCGTGTAT+TGG | 0.330460 | 1_3:-58691612 | Msa0128850:three_prime_UTR |
| ATTGATGCTATACGGAATCT+AGG | 0.335694 | 1_3:-58697428 | Msa0128850:CDS |
| GTTGTATTATGTATAGTATA+TGG | 0.339524 | 1_3:-58691667 | Msa0128850:three_prime_UTR |
| TCCTCTGGCACCCAGTCCTC+TGG | 0.346252 | 1_3:+58695635 | None:intergenic |
| ATACATAGGTAGAGAAATAT+AGG | 0.349225 | 1_3:+58695767 | None:intergenic |
| TGCTCATTGGACTTCTGTTT+AGG | 0.350292 | 1_3:+58695608 | None:intergenic |
| CAATTTGATTGGAGACTTAC+CGG | 0.353350 | 1_3:+58698455 | None:intergenic |
| GACAGAAGACAGAAACAAAC+TGG | 0.355547 | 1_3:-58698583 | Msa0128850:five_prime_UTR |
| TCCCACAGAGTTATTACGTT+TGG | 0.361503 | 1_3:+58695858 | None:intergenic |
| GTATTGGCATACCTCTTCTA+AGG | 0.369504 | 1_3:-58691596 | Msa0128850:three_prime_UTR |
| GCAGAACCAACGAGTGTTCC+AGG | 0.370899 | 1_3:+58696524 | None:intergenic |
| GAGAGGGAAAACAATTTGAT+TGG | 0.375241 | 1_3:+58698444 | None:intergenic |
| ATCATGCTTGCCACTAAATC+AGG | 0.376042 | 1_3:+58693570 | None:intergenic |
| CTCATCATGACCCAGAAAAC+TGG | 0.377169 | 1_3:+58697739 | None:intergenic |
| ACCTAAAATAATTGTGCATA+AGG | 0.381520 | 1_3:+58698332 | None:intergenic |
| CATCTCTTGGAAATAGTGTT+AGG | 0.383494 | 1_3:-58697682 | Msa0128850:CDS |
| TGTTTGTTGCTGGGTGAAAA+AGG | 0.386200 | 1_3:+58698509 | None:intergenic |
| AGCTTGGAGGACCAAGACTT+TGG | 0.399701 | 1_3:-58691834 | Msa0128850:CDS |
| GAGATGAGAGGCCAGAGGAC+TGG | 0.400303 | 1_3:-58695646 | Msa0128850:CDS |
| TTGTTGACAGTACTTCAGTA+TGG | 0.402969 | 1_3:-58695831 | Msa0128850:CDS |
| AAATCCATCCGTGAGCAATA+TGG | 0.403168 | 1_3:+58693835 | None:intergenic |
| AGATGAGAGGCCAGAGGACT+GGG | 0.404824 | 1_3:-58695645 | Msa0128850:CDS |
| AGAGCACTCCACTTGCTCAT+TGG | 0.407702 | 1_3:+58695595 | None:intergenic |
| ACATAATACAACAATGGATA+AGG | 0.408035 | 1_3:+58691678 | None:intergenic |
| TAGCTACTATTGATGCTATA+CGG | 0.408093 | 1_3:-58697436 | Msa0128850:CDS |
| GACCTCATGGCCTGATTTAG+TGG | 0.424047 | 1_3:-58693580 | Msa0128850:CDS |
| TTCACCCTAGAGAGGAACTT+TGG | 0.425398 | 1_3:-58691464 | Msa0128850:three_prime_UTR |
| TGCCAAATCCAAGTAGCAAA+AGG | 0.426022 | 1_3:+58697794 | None:intergenic |
| TTTCCATAGATTGAAAGAAC+CGG | 0.427654 | 1_3:+58697600 | None:intergenic |
| CAGAAGTCATCACTCTTCCT+TGG | 0.433663 | 1_3:-58691627 | Msa0128850:three_prime_UTR |
| GGTGATGTGAATGTTATCTT+TGG | 0.433695 | 1_3:-58697862 | Msa0128850:intron |
| AGTTTCCAAAGTTCCTCTCT+AGG | 0.444295 | 1_3:+58691459 | None:intergenic |
| TGGAGACTTACCGGCGAAGA+TGG | 0.447611 | 1_3:+58698464 | None:intergenic |
| CATAATACAACAATGGATAA+GGG | 0.459605 | 1_3:+58691679 | None:intergenic |
| GCTTGGAGGACCAAGACTTT+GGG | 0.459664 | 1_3:-58691833 | Msa0128850:CDS |
| TATGTAATACAATAAAATAA+GGG | 0.460893 | 1_3:+58691556 | None:intergenic |
| GAATTTAGAATTGAAAATTG+AGG | 0.464057 | 1_3:+58698377 | None:intergenic |
| TTCTGTTTAGGAGTCTCCTC+TGG | 0.464478 | 1_3:+58695620 | None:intergenic |
| AATTTAGAATTGAAAATTGA+GGG | 0.466104 | 1_3:+58698378 | None:intergenic |
| AATACAATTCTAAATGAATC+CGG | 0.467656 | 1_3:+58691741 | None:intergenic |
| GTCTGTATAATACAAATTAA+GGG | 0.472461 | 1_3:+58691701 | None:intergenic |
| CAATGACGGTGTTTGTTGCT+GGG | 0.473628 | 1_3:+58698500 | None:intergenic |
| TTGATGCTATACGGAATCTA+GGG | 0.475105 | 1_3:-58697427 | Msa0128850:CDS |
| TGGAAACTATTGTTTATGGC+TGG | 0.476306 | 1_3:-58691444 | Msa0128850:three_prime_UTR |
| CACTAGCCAGTGGGACCTCA+TGG | 0.480616 | 1_3:-58693593 | Msa0128850:CDS |
| TACATAGGTAGAGAAATATA+GGG | 0.482391 | 1_3:+58695768 | None:intergenic |
| ATGTATAGTATATGGTTCCT+AGG | 0.486712 | 1_3:-58691659 | Msa0128850:three_prime_UTR |
| AATCTAGGGGACTTGTATGC+TGG | 0.488664 | 1_3:-58697413 | Msa0128850:CDS |
| CAAGCATTCAAGGGAGGTTG+TGG | 0.489055 | 1_3:-58697570 | Msa0128850:CDS |
| TTTAGTGGAGAAACATCTCT+TGG | 0.489986 | 1_3:-58697695 | Msa0128850:CDS |
| TACCACACAAACAGCGTGGA+TGG | 0.500886 | 1_3:+58696484 | None:intergenic |
| GATCTTATAAGTTGTGTCAC+AGG | 0.501702 | 1_3:-58693753 | Msa0128850:intron |
| CCTCTCCGAATCCAAAATGC+AGG | 0.501742 | 1_3:-58691946 | Msa0128850:CDS |
| GCCAGAGGACTGGGTGCCAG+AGG | 0.506783 | 1_3:-58695636 | Msa0128850:CDS |
| ATCCGTGAGCAATATGGCAC+GGG | 0.508022 | 1_3:+58693841 | None:intergenic |
| TATTTGGAGACAGCAATTTG+TGG | 0.508898 | 1_3:-58695273 | Msa0128850:CDS |
| GCCAAATCCAAGTAGCAAAA+GGG | 0.513444 | 1_3:+58697795 | None:intergenic |
| GAGGACCAAGACTTTGGGCA+TGG | 0.513831 | 1_3:-58691828 | Msa0128850:CDS |
| TAATATTTAGGTTTGGGACC+TGG | 0.520382 | 1_3:-58696542 | Msa0128850:intron |
| TTGAATTGATAGAGCAGAGA+GGG | 0.522746 | 1_3:+58698428 | None:intergenic |
| GTTTCCAAAGTTCCTCTCTA+GGG | 0.525870 | 1_3:+58691460 | None:intergenic |
| AAAATGTGGTCAAGCATTCA+AGG | 0.527731 | 1_3:-58697580 | Msa0128850:CDS |
| TTACATTGTGACTAAGATAA+CGG | 0.532903 | 1_3:-58693775 | Msa0128850:CDS |
| ATCAGGCCATGAGGTCCCAC+TGG | 0.534624 | 1_3:+58693587 | None:intergenic |
| TTCCATAGATTGAAAGAACC+GGG | 0.535724 | 1_3:+58697601 | None:intergenic |
| ATGTTGGCATTGGTGTTCCA+TGG | 0.536328 | 1_3:-58692008 | Msa0128850:CDS |
| GTAACCCATGCCCAAAGTCT+TGG | 0.537079 | 1_3:+58691823 | None:intergenic |
| CCACACAAACAGCGTGGATG+GGG | 0.537126 | 1_3:+58696486 | None:intergenic |
| ACCACACAAACAGCGTGGAT+GGG | 0.540101 | 1_3:+58696485 | None:intergenic |
| CCCCATCCACGCTGTTTGTG+TGG | 0.540973 | 1_3:-58696486 | Msa0128850:CDS |
| CTTTCAATCTATGGAAAATG+TGG | 0.541423 | 1_3:-58697594 | Msa0128850:CDS |
| AGAACGTGTTTACATTTGCA+TGG | 0.543137 | 1_3:+58698557 | None:intergenic |
| GAATTCGCCGGTGGCAATGA+CGG | 0.549191 | 1_3:+58698486 | None:intergenic |
| TGAGATACATCCAACGGAAG+TGG | 0.554803 | 1_3:+58691891 | None:intergenic |
| CAAGGTTATAGAAACAAGAC+TGG | 0.557010 | 1_3:-58695315 | Msa0128850:CDS |
| AGGACCAAGACTTTGGGCAT+GGG | 0.560608 | 1_3:-58691827 | Msa0128850:CDS |
| TGTGTGGTAATTCCAAAAGC+AGG | 0.563593 | 1_3:-58696470 | Msa0128850:CDS |
| AGAGTGATGACTTCTGGAGA+GGG | 0.568361 | 1_3:+58691634 | None:intergenic |
| TTTAGAATTGAAAATTGAGG+GGG | 0.573797 | 1_3:+58698380 | None:intergenic |
| ACAAACACCGTCATTGCCAC+CGG | 0.574351 | 1_3:-58698493 | Msa0128850:five_prime_UTR |
| ATGTAATACAATAAAATAAG+GGG | 0.574807 | 1_3:+58691557 | None:intergenic |
| TGTAATACAATAAAATAAGG+GGG | 0.575055 | 1_3:+58691558 | None:intergenic |
| CGTGCCATATTGCTCACGGA+TGG | 0.575588 | 1_3:-58693839 | Msa0128850:CDS |
| TACAAAGTATCTATAAGCCA+TGG | 0.575688 | 1_3:+58691991 | None:intergenic |
| CCGGCGAATTCCATCTTCGC+CGG | 0.580070 | 1_3:-58698474 | Msa0128850:five_prime_UTR |
| GTAATACAATAAAATAAGGG+GGG | 0.582188 | 1_3:+58691559 | None:intergenic |
| ACAGAAGTCCAATGAGCAAG+TGG | 0.582888 | 1_3:-58695603 | Msa0128850:CDS |
| GTGAACATATATGTTGGCAT+TGG | 0.584692 | 1_3:-58692018 | Msa0128850:CDS |
| CTCTCCGAATCCAAAATGCA+GGG | 0.585004 | 1_3:-58691945 | Msa0128850:CDS |
| AATTCAGTGAACATATATGT+TGG | 0.588017 | 1_3:-58692024 | Msa0128850:CDS |
| TAATACAATAAAATAAGGGG+GGG | 0.589302 | 1_3:+58691560 | None:intergenic |
| CTAGGGGACTTGTATGCTGG+AGG | 0.592030 | 1_3:-58697410 | Msa0128850:intron |
| GATTATCGGCTATAACATCC+CGG | 0.597399 | 1_3:-58697619 | Msa0128850:CDS |
| TACTATACATAATACAACAA+TGG | 0.599493 | 1_3:+58691672 | None:intergenic |
| TTGGGACCTGGAACACTCGT+TGG | 0.601934 | 1_3:-58696530 | Msa0128850:CDS |
| CATCCGTGAGCAATATGGCA+CGG | 0.604119 | 1_3:+58693840 | None:intergenic |
| GCAATTTGTGGATGCACTGA+CGG | 0.607292 | 1_3:-58695261 | Msa0128850:intron |
| ATAGTAGCTAATGAAATCTG+AGG | 0.608171 | 1_3:+58697449 | None:intergenic |
| TGCCAATACACGAGGGACCA+AGG | 0.608354 | 1_3:+58691610 | None:intergenic |
| ATTTAGAATTGAAAATTGAG+GGG | 0.612355 | 1_3:+58698379 | None:intergenic |
| ATTAAATCTTCACCCTAGAG+AGG | 0.615522 | 1_3:-58691472 | Msa0128850:three_prime_UTR |
| GAACAATATCTATATCCGCA+TGG | 0.616505 | 1_3:-58693922 | Msa0128850:CDS |
| CATTTACAGCACTAGCCAGT+GGG | 0.620095 | 1_3:-58693602 | Msa0128850:CDS |
| ATTGTGCATAAGGCAAGTTG+TGG | 0.626035 | 1_3:+58698342 | None:intergenic |
| AAGAGTGATGACTTCTGGAG+AGG | 0.626377 | 1_3:+58691633 | None:intergenic |
| CCGGCGAAGATGGAATTCGC+CGG | 0.627878 | 1_3:+58698474 | None:intergenic |
| CTCCAAACGTAATAACTCTG+TGG | 0.633255 | 1_3:-58695860 | Msa0128850:CDS |
| TCCAAACGTAATAACTCTGT+GGG | 0.636007 | 1_3:-58695859 | Msa0128850:CDS |
| GCATTTACAGCACTAGCCAG+TGG | 0.639064 | 1_3:-58693603 | Msa0128850:CDS |
| GACTTCTGGAGAGGGCACCT+AGG | 0.639315 | 1_3:+58691642 | None:intergenic |
| AAATGTGGTCAAGCATTCAA+GGG | 0.639474 | 1_3:-58697579 | Msa0128850:CDS |
| CTCCGAATCCAAAATGCAGG+GGG | 0.644346 | 1_3:-58691943 | Msa0128850:CDS |
| TTTGAAGTGCAAGAGATGAG+AGG | 0.653443 | 1_3:-58695658 | Msa0128850:intron |
| ATTGAATTGATAGAGCAGAG+AGG | 0.661520 | 1_3:+58698427 | None:intergenic |
| TGCAAGAGATGAGAGGCCAG+AGG | 0.661620 | 1_3:-58695651 | Msa0128850:CDS |
| AGATCCTGTTACTAAAGCTG+AGG | 0.663014 | 1_3:-58697543 | Msa0128850:CDS |
| CTTATGCTCAAGACAAACGT+TGG | 0.664142 | 1_3:-58695791 | Msa0128850:CDS |
| GCGAAGATGGAATTCGCCGG+TGG | 0.665334 | 1_3:+58698477 | None:intergenic |
| AAAGCGAACATAAATCTCCA+CGG | 0.667049 | 1_3:+58693870 | None:intergenic |
| TGATGCAGAAAATTCTGACA+AGG | 0.670071 | 1_3:-58695333 | Msa0128850:CDS |
| CAAAACTGAGATACATCCAA+CGG | 0.671625 | 1_3:+58691885 | None:intergenic |
| TCTCCGAATCCAAAATGCAG+GGG | 0.673864 | 1_3:-58691944 | Msa0128850:CDS |
| TGCCACTAAATCAGGCCATG+AGG | 0.674005 | 1_3:+58693578 | None:intergenic |
| GGTTATAGAAACAAGACTGG+AGG | 0.674995 | 1_3:-58695312 | Msa0128850:CDS |
| AAACGTAATAACTCTGTGGG+AGG | 0.682559 | 1_3:-58695856 | Msa0128850:CDS |
| AAGAGGTATGCCAATACACG+AGG | 0.689617 | 1_3:+58691602 | None:intergenic |
| TGATGCTATACGGAATCTAG+GGG | 0.693834 | 1_3:-58697426 | Msa0128850:CDS |
| ATACTGAAGTACTGTCAACA+AGG | 0.696254 | 1_3:+58695833 | None:intergenic |
| TGTGGTCAAGCATTCAAGGG+AGG | 0.696613 | 1_3:-58697576 | Msa0128850:CDS |
| GCCAGAAAATTCGAGCCATG+CGG | 0.701112 | 1_3:+58693907 | None:intergenic |
| TCCGTGAGCAATATGGCACG+GGG | 0.703400 | 1_3:+58693842 | None:intergenic |
| ACAGAAGACAGAAACAAACT+GGG | 0.703734 | 1_3:-58698582 | Msa0128850:five_prime_UTR |
| GAATTACCACACAAACAGCG+TGG | 0.704440 | 1_3:+58696480 | None:intergenic |
| AGAGGTATGCCAATACACGA+GGG | 0.724082 | 1_3:+58691603 | None:intergenic |
| AGGTGGAACAGCTACCTCTG+GGG | 0.738813 | 1_3:+58695507 | None:intergenic |
| ATTCATTCAGAAAACCCCAG+AGG | 0.754168 | 1_3:-58695521 | Msa0128850:intron |
| CCGTGAGCAATATGGCACGG+GGG | 0.777065 | 1_3:+58693843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAAAATAAATAAAT+AGG | - | chr1_3:58697338-58697357 | Msa0128850:intron | 0.0% |
| !!! | TTAAAATATTAGTTTTCAAA+AGG | - | chr1_3:58692027-58692046 | Msa0128850:CDS | 10.0% |
| !!! | TATAGAAAAATAGATTTTAA+AGG | - | chr1_3:58693181-58693200 | Msa0128850:intron | 10.0% |
| !! | AATTCATTTATAAAATGAAA+AGG | + | chr1_3:58695042-58695061 | None:intergenic | 10.0% |
| !! | TTGAATTATAAATTTATATG+GGG | - | chr1_3:58695893-58695912 | Msa0128850:intron | 10.0% |
| !! | TCTTAACTTATATATTAATA+CGG | + | chr1_3:58697304-58697323 | None:intergenic | 10.0% |
| !!! | TCTTCTTTTTTTTTTTTTAT+CGG | + | chr1_3:58697461-58697480 | None:intergenic | 10.0% |
| !! | ATAAAAAAAAAAAAAGAAGA+TGG | - | chr1_3:58697461-58697480 | Msa0128850:CDS | 10.0% |
| !! | TATGTAATACAATAAAATAA+GGG | + | chr1_3:58698474-58698493 | None:intergenic | 10.0% |
| !!! | AATTTAGAATTGAAAATTGA+GGG | + | chr1_3:58691652-58691671 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAAATGAT+TGG | - | chr1_3:58692257-58692276 | Msa0128850:intron | 15.0% |
| !! | GAAAAATGTATAAAATGATT+GGG | - | chr1_3:58692258-58692277 | Msa0128850:intron | 15.0% |
| !!! | AATTGCTTTTTATATTTTGA+GGG | - | chr1_3:58693412-58693431 | Msa0128850:intron | 15.0% |
| !!! | ATGTTTAAACTTTAAAACAA+AGG | + | chr1_3:58693690-58693709 | None:intergenic | 15.0% |
| !!! | AAACTTTTAAATACTTCTAA+TGG | + | chr1_3:58694040-58694059 | None:intergenic | 15.0% |
| !!! | AATCATTTTAATGAAGAAAA+CGG | - | chr1_3:58694461-58694480 | Msa0128850:intron | 15.0% |
| !! | TAAAAAAACAATGTAAAGTT+TGG | - | chr1_3:58695777-58695796 | Msa0128850:CDS | 15.0% |
| !! | AGAGTAACTAAAAATAAATT+TGG | - | chr1_3:58696763-58696782 | Msa0128850:intron | 15.0% |
| !! | TTAACTTATATATTAATACG+GGG | + | chr1_3:58697302-58697321 | None:intergenic | 15.0% |
| !! | CTTAACTTATATATTAATAC+GGG | + | chr1_3:58697303-58697322 | None:intergenic | 15.0% |
| !!! | CTATATGTAAGTTATTTTAT+TGG | - | chr1_3:58697899-58697918 | Msa0128850:intron | 15.0% |
| !! | ATGTAATACAATAAAATAAG+GGG | + | chr1_3:58698473-58698492 | None:intergenic | 15.0% |
| !! | GTATGTAATACAATAAAATA+AGG | + | chr1_3:58698475-58698494 | None:intergenic | 15.0% |
| !!! | CATACTAATATATTTTTTGT+TGG | - | chr1_3:58698490-58698509 | Msa0128850:five_prime_UTR | 15.0% |
| !!! | ATTTAGAATTGAAAATTGAG+GGG | + | chr1_3:58691651-58691670 | None:intergenic | 20.0% |
| !!! | GAATTTAGAATTGAAAATTG+AGG | + | chr1_3:58691653-58691672 | None:intergenic | 20.0% |
| !! | TTCAATGATTAAGAAAATTG+AGG | + | chr1_3:58691742-58691761 | None:intergenic | 20.0% |
| !!! | TATTTATTTCTATGCATTGA+CGG | - | chr1_3:58691795-58691814 | Msa0128850:CDS | 20.0% |
| !!! | TTTTAAGTGACAAAATATCT+TGG | + | chr1_3:58692013-58692032 | None:intergenic | 20.0% |
| !!! | GTATTGTTTTATTGGATTAT+CGG | - | chr1_3:58692394-58692413 | Msa0128850:intron | 20.0% |
| !! | TTATTAAACATGAGAAAGTT+TGG | - | chr1_3:58692507-58692526 | Msa0128850:intron | 20.0% |
| !!! | TTGATATGTTCATTGATTTT+GGG | - | chr1_3:58692686-58692705 | Msa0128850:intron | 20.0% |
| !!! | AATAGATTTTAAAGGTACAA+AGG | - | chr1_3:58693189-58693208 | Msa0128850:intron | 20.0% |
| !!! | TTCTCTAAAATTTAATTGCA+AGG | - | chr1_3:58693246-58693265 | Msa0128850:intron | 20.0% |
| !!! | CAATTGCTTTTTATATTTTG+AGG | - | chr1_3:58693411-58693430 | Msa0128850:intron | 20.0% |
| !!! | ATTGCTTTTTATATTTTGAG+GGG | - | chr1_3:58693413-58693432 | Msa0128850:intron | 20.0% |
| !! | TATAACTGTGCTTAATATTT+AGG | - | chr1_3:58693473-58693492 | Msa0128850:intron | 20.0% |
| !!! | CATTTGGTTATACATAATTT+TGG | - | chr1_3:58693646-58693665 | Msa0128850:intron | 20.0% |
| !! | CGGGTTAATAAAAAATAAAA+AGG | + | chr1_3:58693734-58693753 | None:intergenic | 20.0% |
| !! | AAACTGTATTGCAAAATTTA+GGG | - | chr1_3:58693808-58693827 | Msa0128850:CDS | 20.0% |
| !! | AAACAATAAAACTGATGATA+CGG | + | chr1_3:58694088-58694107 | None:intergenic | 20.0% |
| !! | TTCATAAAGAAGTTTAATGT+AGG | - | chr1_3:58694138-58694157 | Msa0128850:intron | 20.0% |
| !!! | ATCATTTTAATGAAGAAAAC+GGG | - | chr1_3:58694462-58694481 | Msa0128850:intron | 20.0% |
| !! | ATACATATTTGCTTACTATT+TGG | - | chr1_3:58694738-58694757 | Msa0128850:intron | 20.0% |
| !!! | TAGTTAATCAGGAAATTTTA+TGG | - | chr1_3:58694959-58694978 | Msa0128850:intron | 20.0% |
| !! | AATTATAAATTTATATGGGG+AGG | - | chr1_3:58695896-58695915 | Msa0128850:intron | 20.0% |
| !! | ATTATAAATTTATATGGGGA+GGG | - | chr1_3:58695897-58695916 | Msa0128850:intron | 20.0% |
| !! | TGAACATTAGTTCATTAATA+AGG | - | chr1_3:58695984-58696003 | Msa0128850:intron | 20.0% |
| !! | TATAATTTACTGTAAAGAAG+TGG | + | chr1_3:58696329-58696348 | None:intergenic | 20.0% |
| !! | CTAATAGTTACCAAAATTTA+TGG | - | chr1_3:58696624-58696643 | Msa0128850:intron | 20.0% |
| !!! | ATTTTTTTAGTTTAACCTGA+AGG | - | chr1_3:58696669-58696688 | Msa0128850:intron | 20.0% |
| !! | GTCCTAAATATTAACTATAA+TGG | - | chr1_3:58696808-58696827 | Msa0128850:intron | 20.0% |
| !! | CTCCATTATAGTTAATATTT+AGG | + | chr1_3:58696813-58696832 | None:intergenic | 20.0% |
| !! | TATATGTACTTAGAACAATT+AGG | + | chr1_3:58697030-58697049 | None:intergenic | 20.0% |
| !! | AAGTACATATATTTCGATAT+AGG | - | chr1_3:58697039-58697058 | Msa0128850:intron | 20.0% |
| !! | TAAATTTCAATAACAAAAGC+AGG | + | chr1_3:58697603-58697622 | None:intergenic | 20.0% |
| !! | TTATTGAAATTTAGTGAGAT+CGG | - | chr1_3:58697610-58697629 | Msa0128850:CDS | 20.0% |
| !! | GAGATAATTTAATATGTATG+TGG | - | chr1_3:58697727-58697746 | Msa0128850:CDS | 20.0% |
| !!! | ATTCATTGTTGACATTTTTA+TGG | + | chr1_3:58697783-58697802 | None:intergenic | 20.0% |
| !! | AATACAATTCTAAATGAATC+CGG | + | chr1_3:58698289-58698308 | None:intergenic | 20.0% |
| !! | GTCTGTATAATACAAATTAA+GGG | + | chr1_3:58698329-58698348 | None:intergenic | 20.0% |
| !! | TACTATACATAATACAACAA+TGG | + | chr1_3:58698358-58698377 | None:intergenic | 20.0% |
| !! | GTTGTATTATGTATAGTATA+TGG | - | chr1_3:58698360-58698379 | Msa0128850:five_prime_UTR | 20.0% |
| !! | TGTAATACAATAAAATAAGG+GGG | + | chr1_3:58698472-58698491 | None:intergenic | 20.0% |
| !! | TTTAGAATTGAAAATTGAGG+GGG | + | chr1_3:58691650-58691669 | None:intergenic | 25.0% |
| ! | ACCTAAAATAATTGTGCATA+AGG | + | chr1_3:58691698-58691717 | None:intergenic | 25.0% |
| !! | TGTAGTTGATATGATTTGAT+TGG | - | chr1_3:58691883-58691902 | Msa0128850:CDS | 25.0% |
| !!! | ACATAACTGATCTGAAATTT+TGG | - | chr1_3:58692198-58692217 | Msa0128850:intron | 25.0% |
| !! | AGGATATTGTTGTATTTTCT+TGG | - | chr1_3:58692365-58692384 | Msa0128850:intron | 25.0% |
| !!! | TATTGCAGATATTAGTCTTT+TGG | - | chr1_3:58692538-58692557 | Msa0128850:intron | 25.0% |
| !!! | CTTGATATGTTCATTGATTT+TGG | - | chr1_3:58692685-58692704 | Msa0128850:intron | 25.0% |
| ! | GAAATTTACTGAATTTATGC+TGG | - | chr1_3:58692722-58692741 | Msa0128850:intron | 25.0% |
| !! | GTTAATATGTCTTTCCATTT+TGG | - | chr1_3:58692852-58692871 | Msa0128850:intron | 25.0% |
| ! | AAAGTGGAAAGACAAATAAA+AGG | + | chr1_3:58692884-58692903 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTCTTTCCACTT+TGG | - | chr1_3:58692883-58692902 | Msa0128850:intron | 25.0% |
| ! | TTTATTTGTCTTTCCACTTT+GGG | - | chr1_3:58692884-58692903 | Msa0128850:intron | 25.0% |
| ! | TCTTTAGGTATGTTAATCAT+AGG | + | chr1_3:58692998-58693017 | None:intergenic | 25.0% |
| ! | GATTAACATACCTAAAGAAT+TGG | - | chr1_3:58693000-58693019 | Msa0128850:intron | 25.0% |
| !! | TGTGCTTAATATTTAGGTTT+GGG | - | chr1_3:58693479-58693498 | Msa0128850:intron | 25.0% |
| !! | TTGGTTATACATAATTTTGG+AGG | - | chr1_3:58693649-58693668 | Msa0128850:intron | 25.0% |
| !!! | ACTTTAAAACAAAGGAATGT+TGG | + | chr1_3:58693682-58693701 | None:intergenic | 25.0% |
| ! | ATCAAATTACAGTTCTTACA+CGG | + | chr1_3:58693754-58693773 | None:intergenic | 25.0% |
| ! | CAAACTGTATTGCAAAATTT+AGG | - | chr1_3:58693807-58693826 | Msa0128850:CDS | 25.0% |
| !! | GATACGATTTTACATTTCAA+TGG | - | chr1_3:58693883-58693902 | Msa0128850:CDS | 25.0% |
| ! | TATGAATATTCCGCATAAAA+AGG | + | chr1_3:58694124-58694143 | None:intergenic | 25.0% |
| ! | AAAGAAGTTTAATGTAGGTA+TGG | - | chr1_3:58694143-58694162 | Msa0128850:intron | 25.0% |
| ! | TACATAGGTAGAGAAATATA+GGG | + | chr1_3:58694262-58694281 | None:intergenic | 25.0% |
| ! | ATACATAGGTAGAGAAATAT+AGG | + | chr1_3:58694263-58694282 | None:intergenic | 25.0% |
| ! | TGCACTTCAAATATAAAATG+AGG | + | chr1_3:58694360-58694379 | None:intergenic | 25.0% |
| !!! | TCATTTTAATGAAGAAAACG+GGG | - | chr1_3:58694463-58694482 | Msa0128850:intron | 25.0% |
| ! | AAATAGTTATACTAGAATCG+TGG | + | chr1_3:58694902-58694921 | None:intergenic | 25.0% |
| ! | AATGTTAATGAATCTCTGAT+AGG | + | chr1_3:58694935-58694954 | None:intergenic | 25.0% |
| ! | TATCAGAGATTCATTAACAT+TGG | - | chr1_3:58694934-58694953 | Msa0128850:intron | 25.0% |
| !! | AGGAAATTTTATGGATATGA+AGG | - | chr1_3:58694968-58694987 | Msa0128850:intron | 25.0% |
| ! | GTTAAGAATTTCATCATAAG+AGG | + | chr1_3:58695011-58695030 | None:intergenic | 25.0% |
| !! | AGCTACTTTATAAGGAAATA+TGG | + | chr1_3:58695222-58695241 | None:intergenic | 25.0% |
| !! | TAACAATGAGCTACTTTATA+AGG | + | chr1_3:58695230-58695249 | None:intergenic | 25.0% |
| ! | AACTATGTAAAGCAACAATA+GGG | + | chr1_3:58695373-58695392 | None:intergenic | 25.0% |
| ! | TAACTATGTAAAGCAACAAT+AGG | + | chr1_3:58695374-58695393 | None:intergenic | 25.0% |
| !! | TAGTATGTTTCTGAATGAAA+TGG | - | chr1_3:58695449-58695468 | Msa0128850:intron | 25.0% |
| !! | AGTATGTTTCTGAATGAAAT+GGG | - | chr1_3:58695450-58695469 | Msa0128850:intron | 25.0% |
| ! | AAGTTTCAAAGGTTACATAT+AGG | + | chr1_3:58695668-58695687 | None:intergenic | 25.0% |
| !!! | ATGTAACCTTTGAAACTTAA+AGG | - | chr1_3:58695670-58695689 | Msa0128850:intron | 25.0% |
| ! | GTTACAAACGTGAAATTTAA+AGG | - | chr1_3:58695701-58695720 | Msa0128850:intron | 25.0% |
| ! | ATGCATCTCTTTATTATCAA+AGG | + | chr1_3:58695842-58695861 | None:intergenic | 25.0% |
| !! | AGATGCATTAGTTTATGAAT+GGG | - | chr1_3:58695854-58695873 | Msa0128850:CDS | 25.0% |
| !!! | GGTGTGTAATTTTTTTAAAC+AGG | - | chr1_3:58696057-58696076 | Msa0128850:intron | 25.0% |
| !!! | GTGTAATTTTTTTAAACAGG+TGG | - | chr1_3:58696060-58696079 | Msa0128850:intron | 25.0% |
| !!! | TGTTCATTTTTTTAGACTCT+TGG | + | chr1_3:58696090-58696109 | None:intergenic | 25.0% |
| ! | TTACATTGTGACTAAGATAA+CGG | - | chr1_3:58696252-58696271 | Msa0128850:intron | 25.0% |
| ! | GATGAAATAAGTCATTAACA+AGG | + | chr1_3:58696364-58696383 | None:intergenic | 25.0% |
| !! | ATACATCTCATTCTTACTTT+TGG | - | chr1_3:58696548-58696567 | Msa0128850:intron | 25.0% |
| ! | AATGTAGACATATGTACAAA+TGG | - | chr1_3:58697208-58697227 | Msa0128850:intron | 25.0% |
| ! | ATTATGAACATAAGTGAACT+TGG | - | chr1_3:58697576-58697595 | Msa0128850:CDS | 25.0% |
| ! | AAATGTGAAGTTTGAATTGA+TGG | + | chr1_3:58697672-58697691 | None:intergenic | 25.0% |
| ! | ACCTAGAAAATTTATTTCCT+AGG | - | chr1_3:58697810-58697829 | Msa0128850:five_prime_UTR | 25.0% |
| !! | TCCTAGGAAATAAATTTTCT+AGG | + | chr1_3:58697814-58697833 | None:intergenic | 25.0% |
| ! | TCGAATCAAATTTCATTGTT+TGG | - | chr1_3:58697836-58697855 | Msa0128850:five_prime_UTR | 25.0% |
| ! | ATCAAATTTCATTGTTTGGT+TGG | - | chr1_3:58697840-58697859 | Msa0128850:five_prime_UTR | 25.0% |
| ! | AATTCAGTGAACATATATGT+TGG | - | chr1_3:58698003-58698022 | Msa0128850:intron | 25.0% |
| ! | GGTCTGTATAATACAAATTA+AGG | + | chr1_3:58698330-58698349 | None:intergenic | 25.0% |
| ! | CATAATACAACAATGGATAA+GGG | + | chr1_3:58698351-58698370 | None:intergenic | 25.0% |
| ! | ACATAATACAACAATGGATA+AGG | + | chr1_3:58698352-58698371 | None:intergenic | 25.0% |
| !!! | ATTTTTAAAAGCCTTAGAAG+AGG | + | chr1_3:58698445-58698464 | None:intergenic | 25.0% |
| ! | TAATACAATAAAATAAGGGG+GGG | + | chr1_3:58698470-58698489 | None:intergenic | 25.0% |
| ! | GTAATACAATAAAATAAGGG+GGG | + | chr1_3:58698471-58698490 | None:intergenic | 25.0% |
| !! | ACTTTGGAAACTATTGTTTA+TGG | - | chr1_3:58698579-58698598 | Msa0128850:five_prime_UTR | 25.0% |
| ! | GCCTTATGCACAATTATTTT+AGG | - | chr1_3:58691694-58691713 | Msa0128850:three_prime_UTR | 30.0% |
| ACATCATGGAGTGATTTAAT+TGG | + | chr1_3:58691842-58691861 | None:intergenic | 30.0% | |
| CTGATCTATGCTTATATATC+AGG | - | chr1_3:58692144-58692163 | Msa0128850:intron | 30.0% | |
| !! | GAAAGCTACTTGATTTTTAG+TGG | - | chr1_3:58692317-58692336 | Msa0128850:intron | 30.0% |
| TTTCCATAGATTGAAAGAAC+CGG | + | chr1_3:58692430-58692449 | None:intergenic | 30.0% | |
| CTTTCAATCTATGGAAAATG+TGG | - | chr1_3:58692433-58692452 | Msa0128850:intron | 30.0% | |
| ATAGTAGCTAATGAAATCTG+AGG | + | chr1_3:58692581-58692600 | None:intergenic | 30.0% | |
| TAGCTACTATTGATGCTATA+CGG | - | chr1_3:58692591-58692610 | Msa0128850:intron | 30.0% | |
| ! | TTTTGAACTCTGTCTTTCAT+AGG | - | chr1_3:58692655-58692674 | Msa0128850:intron | 30.0% |
| TTATTTGTCTTTCCACTTTG+GGG | - | chr1_3:58692885-58692904 | Msa0128850:intron | 30.0% | |
| TTAGGTATGTTAATCATAGG+TGG | + | chr1_3:58692995-58693014 | None:intergenic | 30.0% | |
| TGTCAACTAACCAATTCTTT+AGG | + | chr1_3:58693013-58693032 | None:intergenic | 30.0% | |
| ! | CGACGATTTTAAACAGTTTA+AGG | + | chr1_3:58693037-58693056 | None:intergenic | 30.0% |
| ! | GTGTTTTCTTTCAAATTGTG+AGG | + | chr1_3:58693070-58693089 | None:intergenic | 30.0% |
| ! | TATTTTGTATATGTCAGTGC+TGG | - | chr1_3:58693324-58693343 | Msa0128850:intron | 30.0% |
| ! | CTGTGCTTAATATTTAGGTT+TGG | - | chr1_3:58693478-58693497 | Msa0128850:intron | 30.0% |
| TTGAAAAAGATTGCAGATCT+AGG | - | chr1_3:58693584-58693603 | Msa0128850:CDS | 30.0% | |
| ! | TATGGATAGTAGAGCTATTT+TGG | - | chr1_3:58693609-58693628 | Msa0128850:CDS | 30.0% |
| !!! | TAGAGCTATTTTGGTCATTT+TGG | - | chr1_3:58693618-58693637 | Msa0128850:CDS | 30.0% |
| !!! | AGAGCTATTTTGGTCATTTT+GGG | - | chr1_3:58693619-58693638 | Msa0128850:CDS | 30.0% |
| TCAAATTACAGTTCTTACAC+GGG | + | chr1_3:58693753-58693772 | None:intergenic | 30.0% | |
| ATACAGTTTGTAAGAAGAGA+AGG | + | chr1_3:58693797-58693816 | None:intergenic | 30.0% | |
| GTAAACGTAATAATACACGT+TGG | + | chr1_3:58693909-58693928 | None:intergenic | 30.0% | |
| !! | CTTCAGTTTGTTTCATGTTT+TGG | - | chr1_3:58694286-58694305 | Msa0128850:intron | 30.0% |
| AGAAAGGTCAAAATTTGAGA+GGG | + | chr1_3:58694328-58694347 | None:intergenic | 30.0% | |
| TAGAAAGGTCAAAATTTGAG+AGG | + | chr1_3:58694329-58694348 | None:intergenic | 30.0% | |
| CAAATTTCACTACAATAAGG+TGG | + | chr1_3:58694540-58694559 | None:intergenic | 30.0% | |
| CACCTTATTGTAGTGAAATT+TGG | - | chr1_3:58694538-58694557 | Msa0128850:intron | 30.0% | |
| AGCCAAATTTCACTACAATA+AGG | + | chr1_3:58694543-58694562 | None:intergenic | 30.0% | |
| ! | TTTTCTGCATCATCTATTTG+AGG | + | chr1_3:58694686-58694705 | None:intergenic | 30.0% |
| !! | TAACATTGGCTTAGTTAATC+AGG | - | chr1_3:58694948-58694967 | Msa0128850:intron | 30.0% |
| TAGTCAAGCTAAATTTCTTG+AGG | - | chr1_3:58695342-58695361 | Msa0128850:CDS | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | + | chr1_3:58695494-58695513 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | - | chr1_3:58695516-58695535 | Msa0128850:intron | 30.0% |
| !! | CTGTAACCTTTGAAACTTAA+AGG | + | chr1_3:58695525-58695544 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTACAGAT+AGG | - | chr1_3:58695527-58695546 | Msa0128850:CDS | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr1_3:58695545-58695564 | Msa0128850:CDS | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr1_3:58695554-58695573 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr1_3:58695556-58695575 | Msa0128850:CDS | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr1_3:58695612-58695631 | Msa0128850:CDS | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr1_3:58695516-58695535 | None:intergenic | 30.0% |
| ATTTCACGTTTGTAACAGAT+AGG | + | chr1_3:58695697-58695716 | None:intergenic | 30.0% | |
| !!! | CCTAGTTTTATGCATTTCAT+TGG | + | chr1_3:58695745-58695764 | None:intergenic | 30.0% |
| CCAATGAAATGCATAAAACT+AGG | - | chr1_3:58695742-58695761 | Msa0128850:intron | 30.0% | |
| ! | GAGATGCATTAGTTTATGAA+TGG | - | chr1_3:58695853-58695872 | Msa0128850:CDS | 30.0% |
| !! | ATTAATAAGGAGTACTGATG+TGG | - | chr1_3:58695997-58696016 | Msa0128850:intron | 30.0% |
| !! | TTAATAAGGAGTACTGATGT+GGG | - | chr1_3:58695998-58696017 | Msa0128850:intron | 30.0% |
| !!! | TCTTTTTTTACCTCTTCAAC+AGG | - | chr1_3:58696382-58696401 | Msa0128850:intron | 30.0% |
| ! | ACTATAATGGAGTTAGCTTA+TGG | - | chr1_3:58696821-58696840 | Msa0128850:intron | 30.0% |
| GATTAATCAAATGCTCTAGT+AGG | - | chr1_3:58697070-58697089 | Msa0128850:intron | 30.0% | |
| AAAAAAAAGAAGATGGACCT+AGG | - | chr1_3:58697468-58697487 | Msa0128850:CDS | 30.0% | |
| !!! | CGTACATTTTTTAATGCAAG+AGG | - | chr1_3:58697635-58697654 | Msa0128850:CDS | 30.0% |
| CTTAAGATCGCTGTATAATT+GGG | + | chr1_3:58697757-58697776 | None:intergenic | 30.0% | |
| ACTTAAGATCGCTGTATAAT+TGG | + | chr1_3:58697758-58697777 | None:intergenic | 30.0% | |
| ! | GAAATTTGATTCGAAATCCT+AGG | + | chr1_3:58697830-58697849 | None:intergenic | 30.0% |
| AAATTTCATTGTTTGGTTGG+AGG | - | chr1_3:58697843-58697862 | Msa0128850:five_prime_UTR | 30.0% | |
| CAGATGGGTATTAAATGAAA+GGG | + | chr1_3:58697875-58697894 | None:intergenic | 30.0% | |
| TCAGATGGGTATTAAATGAA+AGG | + | chr1_3:58697876-58697895 | None:intergenic | 30.0% | |
| CTTACATATAGAACTCAGAT+GGG | + | chr1_3:58697890-58697909 | None:intergenic | 30.0% | |
| ACTTACATATAGAACTCAGA+TGG | + | chr1_3:58697891-58697910 | None:intergenic | 30.0% | |
| TAAAGCTTCTTCATAGAACA+AGG | + | chr1_3:58697935-58697954 | None:intergenic | 30.0% | |
| ! | TATGAAGAAGCTTTATAGAG+CGG | - | chr1_3:58697940-58697959 | Msa0128850:intron | 30.0% |
| ! | TACAAAGTATCTATAAGCCA+TGG | + | chr1_3:58698039-58698058 | None:intergenic | 30.0% |
| !!! | GTATCTCAGTTTTGATTGTT+AGG | - | chr1_3:58698151-58698170 | Msa0128850:intron | 30.0% |
| ! | ATTGTTAGGCGTATAGTTTT+TGG | - | chr1_3:58698165-58698184 | Msa0128850:intron | 30.0% |
| TGTTGTACTATCTTCTCTTA+AGG | - | chr1_3:58698260-58698279 | Msa0128850:intron | 30.0% | |
| ATGTATAGTATATGGTTCCT+AGG | - | chr1_3:58698368-58698387 | Msa0128850:five_prime_UTR | 30.0% | |
| ACAGAAGACAGAAACAAACT+GGG | - | chr1_3:58691445-58691464 | Msa0128850:three_prime_UTR | 35.0% | |
| AGAACGTGTTTACATTTGCA+TGG | + | chr1_3:58691473-58691492 | None:intergenic | 35.0% | |
| CAATTTGATTGGAGACTTAC+CGG | + | chr1_3:58691575-58691594 | None:intergenic | 35.0% | |
| GAGAGGGAAAACAATTTGAT+TGG | + | chr1_3:58691586-58691605 | None:intergenic | 35.0% | |
| TTGAATTGATAGAGCAGAGA+GGG | + | chr1_3:58691602-58691621 | None:intergenic | 35.0% | |
| ATTGAATTGATAGAGCAGAG+AGG | + | chr1_3:58691603-58691622 | None:intergenic | 35.0% | |
| AATTGAAAATTGAGGGGGAA+TGG | + | chr1_3:58691645-58691664 | None:intergenic | 35.0% | |
| ACACGCATACAAATACATCA+TGG | + | chr1_3:58691856-58691875 | None:intergenic | 35.0% | |
| GGTGATGTGAATGTTATCTT+TGG | - | chr1_3:58692165-58692184 | Msa0128850:intron | 35.0% | |
| ! | ATTGAAACCCTTTTGCTACT+TGG | - | chr1_3:58692225-58692244 | Msa0128850:intron | 35.0% |
| TTTAGTGGAGAAACATCTCT+TGG | - | chr1_3:58692332-58692351 | Msa0128850:intron | 35.0% | |
| CATCTCTTGGAAATAGTGTT+AGG | - | chr1_3:58692345-58692364 | Msa0128850:intron | 35.0% | |
| !! | GGTCTTGCGTATTGTTTTAT+TGG | - | chr1_3:58692386-58692405 | Msa0128850:intron | 35.0% |
| TTCCATAGATTGAAAGAACC+GGG | + | chr1_3:58692429-58692448 | None:intergenic | 35.0% | |
| AAAATGTGGTCAAGCATTCA+AGG | - | chr1_3:58692447-58692466 | Msa0128850:intron | 35.0% | |
| AAATGTGGTCAAGCATTCAA+GGG | - | chr1_3:58692448-58692467 | Msa0128850:intron | 35.0% | |
| ! | ATAACCTCAGCTTTAGTAAC+AGG | + | chr1_3:58692491-58692510 | None:intergenic | 35.0% |
| !!! | GATATTAGTCTTTTGGCGTT+TGG | - | chr1_3:58692545-58692564 | Msa0128850:intron | 35.0% |
| ATTGATGCTATACGGAATCT+AGG | - | chr1_3:58692599-58692618 | Msa0128850:intron | 35.0% | |
| TTGATGCTATACGGAATCTA+GGG | - | chr1_3:58692600-58692619 | Msa0128850:intron | 35.0% | |
| AACTCTGTCTTTCATAGGAT+GGG | - | chr1_3:58692660-58692679 | Msa0128850:intron | 35.0% | |
| ATCTTACTAACTCTGCTTAG+TGG | - | chr1_3:58692785-58692804 | Msa0128850:intron | 35.0% | |
| AACTCTGCTTAGTGGAAAAA+AGG | - | chr1_3:58692793-58692812 | Msa0128850:intron | 35.0% | |
| ATGTTAATCATAGGTGGAGT+TGG | + | chr1_3:58692989-58693008 | None:intergenic | 35.0% | |
| CTTGATCTTTAAGCTTACGT+TGG | - | chr1_3:58693129-58693148 | Msa0128850:intron | 35.0% | |
| GCACAGTTATAGAGAGTTAT+AGG | + | chr1_3:58693464-58693483 | None:intergenic | 35.0% | |
| ! | TAATATTTAGGTTTGGGACC+TGG | - | chr1_3:58693485-58693504 | Msa0128850:intron | 35.0% |
| !! | TTTTTCAACTCTCCTGCTTT+TGG | + | chr1_3:58693572-58693591 | None:intergenic | 35.0% |
| TAAGACTACCTCTCACTTTA+AGG | - | chr1_3:58693853-58693872 | Msa0128850:CDS | 35.0% | |
| AAGACTACCTCTCACTTTAA+GGG | - | chr1_3:58693854-58693873 | Msa0128850:CDS | 35.0% | |
| ! | ATTGTCCTAACTTGCAGATT+GGG | + | chr1_3:58693973-58693992 | None:intergenic | 35.0% |
| ! | AATTGTCCTAACTTGCAGAT+TGG | + | chr1_3:58693974-58693993 | None:intergenic | 35.0% |
| ! | TCCTGATTGTCCTTTTTATG+CGG | - | chr1_3:58694111-58694130 | Msa0128850:intron | 35.0% |
| TCCAAACGTAATAACTCTGT+GGG | - | chr1_3:58694168-58694187 | Msa0128850:intron | 35.0% | |
| !! | ATACTGAAGTACTGTCAACA+AGG | + | chr1_3:58694197-58694216 | None:intergenic | 35.0% |
| TTGTTGACAGTACTTCAGTA+TGG | - | chr1_3:58694196-58694215 | Msa0128850:intron | 35.0% | |
| ACAAACTGAAGCACATACAT+AGG | + | chr1_3:58694277-58694296 | None:intergenic | 35.0% | |
| ! | AATGAGGTGTCAGAATAGAA+AGG | + | chr1_3:58694344-58694363 | None:intergenic | 35.0% |
| TCATGCAAGCAAATTGTTTC+AGG | + | chr1_3:58694588-58694607 | None:intergenic | 35.0% | |
| TGATGCAGAAAATTCTGACA+AGG | - | chr1_3:58694694-58694713 | Msa0128850:intron | 35.0% | |
| CAAGGTTATAGAAACAAGAC+TGG | - | chr1_3:58694712-58694731 | Msa0128850:intron | 35.0% | |
| TATTTGGAGACAGCAATTTG+TGG | - | chr1_3:58694754-58694773 | Msa0128850:intron | 35.0% | |
| ! | GCTGTGGTTGTTGTTATAAT+TGG | + | chr1_3:58694845-58694864 | None:intergenic | 35.0% |
| ! | ACTAGAATCGTGGATTTTGA+AGG | + | chr1_3:58694892-58694911 | None:intergenic | 35.0% |
| AGTACCTGTTGAATTTCAGA+TGG | - | chr1_3:58695195-58695214 | Msa0128850:intron | 35.0% | |
| GTACCTGTTGAATTTCAGAT+GGG | - | chr1_3:58695196-58695215 | Msa0128850:intron | 35.0% | |
| !! | CTTGCTCGTATTGTTGATTT+GGG | - | chr1_3:58695419-58695438 | Msa0128850:intron | 35.0% |
| GTTTCACGTTTGTAACAGAT+AGG | - | chr1_3:58695498-58695517 | Msa0128850:intron | 35.0% | |
| CTTTCTATCAACCTCCATTA+AGG | + | chr1_3:58695583-58695602 | None:intergenic | 35.0% | |
| !! | CTTAATGGAGGTTGATAGAA+AGG | - | chr1_3:58695581-58695600 | Msa0128850:CDS | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr1_3:58695608-58695627 | None:intergenic | 35.0% |
| !! | AAGCTTCTAAGGTTTCAGAT+AGG | + | chr1_3:58695639-58695658 | None:intergenic | 35.0% |
| CTGAAACCTTAGAAGCTTAA+AGG | - | chr1_3:58695641-58695660 | Msa0128850:CDS | 35.0% | |
| ATAGGTCCTTTAAGCTTCTA+AGG | + | chr1_3:58695650-58695669 | None:intergenic | 35.0% | |
| !! | AACAATGTAAAGTTTGGTGC+TGG | - | chr1_3:58695783-58695802 | Msa0128850:CDS | 35.0% |
| ATAAATTTATATGGGGAGGG+AGG | - | chr1_3:58695900-58695919 | Msa0128850:intron | 35.0% | |
| TATCGTCAATTTCTGATGAC+TGG | - | chr1_3:58696036-58696055 | Msa0128850:intron | 35.0% | |
| GAACAATATCTATATCCGCA+TGG | - | chr1_3:58696105-58696124 | Msa0128850:intron | 35.0% | |
| AAAGCGAACATAAATCTCCA+CGG | + | chr1_3:58696160-58696179 | None:intergenic | 35.0% | |
| GATCTTATAAGTTGTGTCAC+AGG | - | chr1_3:58696274-58696293 | Msa0128850:intron | 35.0% | |
| TTTACTGTAAAGAAGTGGAG+CGG | + | chr1_3:58696324-58696343 | None:intergenic | 35.0% | |
| AGCATTTATTCCTGTTGAAG+AGG | + | chr1_3:58696395-58696414 | None:intergenic | 35.0% | |
| ! | AAGCTGCACTCCATAAATTT+TGG | + | chr1_3:58696637-58696656 | None:intergenic | 35.0% |
| !!! | GGAGTGCAGCTTTTTATTTT+TGG | - | chr1_3:58696645-58696664 | Msa0128850:intron | 35.0% |
| !! | TTTAACCTGAAGGTTCTGAA+AGG | - | chr1_3:58696679-58696698 | Msa0128850:intron | 35.0% |
| ATGGAAGTTTACTGAAGTAC+AGG | - | chr1_3:58696840-58696859 | Msa0128850:intron | 35.0% | |
| TGGAAGTTTACTGAAGTACA+GGG | - | chr1_3:58696841-58696860 | Msa0128850:intron | 35.0% | |
| !!! | GTTGCGCTCTTTTTTTTTTG+TGG | - | chr1_3:58697121-58697140 | Msa0128850:intron | 35.0% |
| TCTCTAATTGCTGTGAATGT+AGG | + | chr1_3:58697711-58697730 | None:intergenic | 35.0% | |
| TCATAGAACAAGGATTTGAC+AGG | + | chr1_3:58697925-58697944 | None:intergenic | 35.0% | |
| GTGAACATATATGTTGGCAT+TGG | - | chr1_3:58698009-58698028 | Msa0128850:intron | 35.0% | |
| CAAAACTGAGATACATCCAA+CGG | + | chr1_3:58698145-58698164 | None:intergenic | 35.0% | |
| CTATCTTCTCTTAAGGTTTC+CGG | - | chr1_3:58698267-58698286 | Msa0128850:intron | 35.0% | |
| ATTAAATCTTCACCCTAGAG+AGG | - | chr1_3:58698555-58698574 | Msa0128850:five_prime_UTR | 35.0% | |
| TGGAAACTATTGTTTATGGC+TGG | - | chr1_3:58698583-58698602 | Msa0128850:five_prime_UTR | 35.0% | |
| GACAGAAGACAGAAACAAAC+TGG | - | chr1_3:58691444-58691463 | Msa0128850:three_prime_UTR | 40.0% | |
| ! | TGTTTGTTGCTGGGTGAAAA+AGG | + | chr1_3:58691521-58691540 | None:intergenic | 40.0% |
| ATTGTGCATAAGGCAAGTTG+TGG | + | chr1_3:58691688-58691707 | None:intergenic | 40.0% | |
| !! | ACCCTTTTGCTACTTGGATT+TGG | - | chr1_3:58692231-58692250 | Msa0128850:intron | 40.0% |
| GCCAAATCCAAGTAGCAAAA+GGG | + | chr1_3:58692235-58692254 | None:intergenic | 40.0% | |
| TGCCAAATCCAAGTAGCAAA+AGG | + | chr1_3:58692236-58692255 | None:intergenic | 40.0% | |
| ! | TGGGTACTTATCCAGTTTTC+TGG | - | chr1_3:58692277-58692296 | Msa0128850:intron | 40.0% |
| ! | GGGTACTTATCCAGTTTTCT+GGG | - | chr1_3:58692278-58692297 | Msa0128850:intron | 40.0% |
| ! | GATTATCGGCTATAACATCC+CGG | - | chr1_3:58692408-58692427 | Msa0128850:intron | 40.0% |
| ATCCCGGTTCTTTCAATCTA+TGG | - | chr1_3:58692424-58692443 | Msa0128850:intron | 40.0% | |
| AGATCCTGTTACTAAAGCTG+AGG | - | chr1_3:58692484-58692503 | Msa0128850:intron | 40.0% | |
| TGATGCTATACGGAATCTAG+GGG | - | chr1_3:58692601-58692620 | Msa0128850:intron | 40.0% | |
| GAACTCTGTCTTTCATAGGA+TGG | - | chr1_3:58692659-58692678 | Msa0128850:intron | 40.0% | |
| ! | ATAAAAGGTGTGCGCCAAAA+TGG | + | chr1_3:58692869-58692888 | None:intergenic | 40.0% |
| !!! | TTTGGGGTAGGCAACTTTTT+TGG | - | chr1_3:58692901-58692920 | Msa0128850:intron | 40.0% |
| TGTGTGGTAATTCCAAAAGC+AGG | - | chr1_3:58693557-58693576 | Msa0128850:CDS | 40.0% | |
| AGATTGCAGATCTAGGAGTA+TGG | - | chr1_3:58693591-58693610 | Msa0128850:CDS | 40.0% | |
| !! | GGTCATTTTGGGCTTACATT+TGG | - | chr1_3:58693630-58693649 | Msa0128850:intron | 40.0% |
| CTAACATCCCTTAAAGTGAG+AGG | + | chr1_3:58693864-58693883 | None:intergenic | 40.0% | |
| TGGATATTCATCGTCAGCTT+AGG | + | chr1_3:58693936-58693955 | None:intergenic | 40.0% | |
| ! | TTGTCCTAACTTGCAGATTG+GGG | + | chr1_3:58693972-58693991 | None:intergenic | 40.0% |
| TCCGCATAAAAAGGACAATC+AGG | + | chr1_3:58694115-58694134 | None:intergenic | 40.0% | |
| CTCCAAACGTAATAACTCTG+TGG | - | chr1_3:58694167-58694186 | Msa0128850:intron | 40.0% | |
| TCCCACAGAGTTATTACGTT+TGG | + | chr1_3:58694172-58694191 | None:intergenic | 40.0% | |
| AAACGTAATAACTCTGTGGG+AGG | - | chr1_3:58694171-58694190 | Msa0128850:intron | 40.0% | |
| CTTATGCTCAAGACAAACGT+TGG | - | chr1_3:58694236-58694255 | Msa0128850:intron | 40.0% | |
| ! | TTTGAAGTGCAAGAGATGAG+AGG | - | chr1_3:58694369-58694388 | Msa0128850:intron | 40.0% |
| TGCTCATTGGACTTCTGTTT+AGG | + | chr1_3:58694422-58694441 | None:intergenic | 40.0% | |
| !! | TCTGGGGTTTTCTGAATGAA+TGG | + | chr1_3:58694507-58694526 | None:intergenic | 40.0% |
| ATTCATTCAGAAAACCCCAG+AGG | - | chr1_3:58694506-58694525 | Msa0128850:intron | 40.0% | |
| GGTTATAGAAACAAGACTGG+AGG | - | chr1_3:58694715-58694734 | Msa0128850:intron | 40.0% | |
| TAACAACAACCACAGCCAAT+TGG | - | chr1_3:58694849-58694868 | Msa0128850:intron | 40.0% | |
| TAAAGCAGATAATAGCCTCG+TGG | - | chr1_3:58695129-58695148 | Msa0128850:intron | 40.0% | |
| CCAAATCAACAATACGAGCA+AGG | + | chr1_3:58695421-58695440 | None:intergenic | 40.0% | |
| ! | CCTTGCTCGTATTGTTGATT+TGG | - | chr1_3:58695418-58695437 | Msa0128850:intron | 40.0% |
| GGTTTCAGATAGGTCCTTAA+TGG | - | chr1_3:58695566-58695585 | Msa0128850:CDS | 40.0% | |
| TTCAGATAGGTCCTTAATGG+AGG | - | chr1_3:58695569-58695588 | Msa0128850:CDS | 40.0% | |
| GAAATTTAAAGGACCCAGAG+AGG | - | chr1_3:58695712-58695731 | Msa0128850:intron | 40.0% | |
| !! | TGTAAAGTTTGGTGCTGGTT+TGG | - | chr1_3:58695788-58695807 | Msa0128850:CDS | 40.0% |
| ATCGAGCAATTTACTGACGT+TGG | - | chr1_3:58695814-58695833 | Msa0128850:CDS | 40.0% | |
| AAATCCATCCGTGAGCAATA+TGG | + | chr1_3:58696195-58696214 | None:intergenic | 40.0% | |
| ! | TGCTCTCTTCTTTTCATCAG+TGG | - | chr1_3:58696223-58696242 | Msa0128850:intron | 40.0% |
| ! | GCTCTCTTCTTTTCATCAGT+GGG | - | chr1_3:58696224-58696243 | Msa0128850:intron | 40.0% |
| AGTCATTAACAAGGCAACTG+TGG | + | chr1_3:58696355-58696374 | None:intergenic | 40.0% | |
| ATCATGCTTGCCACTAAATC+AGG | + | chr1_3:58696460-58696479 | None:intergenic | 40.0% | |
| TGCTGAACGTCAAAAAACAG+CGG | - | chr1_3:58696483-58696502 | Msa0128850:CDS | 40.0% | |
| CAATTGCAAACATCACTTGC+AGG | - | chr1_3:58696512-58696531 | Msa0128850:CDS | 40.0% | |
| AACTTCCTTTCAGAACCTTC+AGG | + | chr1_3:58696687-58696706 | None:intergenic | 40.0% | |
| AAGGAAGTTATAACCTCCAG+TGG | - | chr1_3:58696698-58696717 | Msa0128850:intron | 40.0% | |
| ATAAGAAGTTGAACCACTGG+AGG | + | chr1_3:58696714-58696733 | None:intergenic | 40.0% | |
| TCCAGTGGTTCAACTTCTTA+TGG | - | chr1_3:58696713-58696732 | Msa0128850:intron | 40.0% | |
| TCCATAAGAAGTTGAACCAC+TGG | + | chr1_3:58696717-58696736 | None:intergenic | 40.0% | |
| ACTCTTGAGATGTTCGAAAC+AGG | + | chr1_3:58696748-58696767 | None:intergenic | 40.0% | |
| GGAAGTTTACTGAAGTACAG+GGG | - | chr1_3:58696842-58696861 | Msa0128850:intron | 40.0% | |
| !!! | ATAGTTTTTGGTGCAGAGCT+TGG | - | chr1_3:58698177-58698196 | Msa0128850:intron | 40.0% |
| ! | GTATTGGCATACCTCTTCTA+AGG | - | chr1_3:58698431-58698450 | Msa0128850:five_prime_UTR | 40.0% |
| GTTTCCAAAGTTCCTCTCTA+GGG | + | chr1_3:58698570-58698589 | None:intergenic | 40.0% | |
| AGTTTCCAAAGTTCCTCTCT+AGG | + | chr1_3:58698571-58698590 | None:intergenic | 40.0% | |
| TGTTGCTGGGTGAAAAAGGA+GGG | + | chr1_3:58691517-58691536 | None:intergenic | 45.0% | |
| TTGTTGCTGGGTGAAAAAGG+AGG | + | chr1_3:58691518-58691537 | None:intergenic | 45.0% | |
| ! | CAATGACGGTGTTTGTTGCT+GGG | + | chr1_3:58691530-58691549 | None:intergenic | 45.0% |
| CTCATCATGACCCAGAAAAC+TGG | + | chr1_3:58692291-58692310 | None:intergenic | 45.0% | |
| AATCTAGGGGACTTGTATGC+TGG | - | chr1_3:58692614-58692633 | Msa0128850:intron | 45.0% | |
| !! | TTGTCTTTCCACTTTGGGGT+AGG | - | chr1_3:58692889-58692908 | Msa0128850:intron | 45.0% |
| AAAAGTTGCCTACCCCAAAG+TGG | + | chr1_3:58692900-58692919 | None:intergenic | 45.0% | |
| GAATTACCACACAAACAGCG+TGG | + | chr1_3:58693550-58693569 | None:intergenic | 45.0% | |
| ATTGGGGTACAAGCTTGTGT+TGG | + | chr1_3:58693956-58693975 | None:intergenic | 45.0% | |
| TGTACCCCAATCTGCAAGTT+AGG | - | chr1_3:58693965-58693984 | Msa0128850:intron | 45.0% | |
| TTCTGTTTAGGAGTCTCCTC+TGG | + | chr1_3:58694410-58694429 | None:intergenic | 45.0% | |
| ACAGAAGTCCAATGAGCAAG+TGG | - | chr1_3:58694424-58694443 | Msa0128850:intron | 45.0% | |
| GCAATTTGTGGATGCACTGA+CGG | - | chr1_3:58694766-58694785 | Msa0128850:intron | 45.0% | |
| !! | CACAGCCAATTGGTGATGTT+GGG | - | chr1_3:58694859-58694878 | Msa0128850:intron | 45.0% |
| TCATAAGAGGCCTGCACTAT+AGG | + | chr1_3:58694998-58695017 | None:intergenic | 45.0% | |
| AATAGCCTCGTGGAGTTTAC+AGG | - | chr1_3:58695139-58695158 | Msa0128850:intron | 45.0% | |
| TTGATCCTGTAAACTCCACG+AGG | + | chr1_3:58695147-58695166 | None:intergenic | 45.0% | |
| ! | TGGCCCATCTGAAATTCAAC+AGG | + | chr1_3:58695202-58695221 | None:intergenic | 45.0% |
| AAATGGGTCAAATACCTCCC+TGG | - | chr1_3:58695466-58695485 | Msa0128850:intron | 45.0% | |
| AATGGGTCAAATACCTCCCT+GGG | - | chr1_3:58695467-58695486 | Msa0128850:intron | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | + | chr1_3:58695486-58695505 | None:intergenic | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | + | chr1_3:58695487-58695506 | None:intergenic | 45.0% | |
| !! | AAAGGACCCAGAGAGGTATT+TGG | - | chr1_3:58695719-58695738 | Msa0128850:intron | 45.0% |
| CATTGGCCAAATACCTCTCT+GGG | + | chr1_3:58695728-58695747 | None:intergenic | 45.0% | |
| TCATTGGCCAAATACCTCTC+TGG | + | chr1_3:58695729-58695748 | None:intergenic | 45.0% | |
| AGTTTACTGAAGTACAGGGG+CGG | - | chr1_3:58696845-58696864 | Msa0128850:intron | 45.0% | |
| CTGGACTCTCGATATTAGTG+AGG | - | chr1_3:58696870-58696889 | Msa0128850:intron | 45.0% | |
| CTGCTGACATACTTCAGCAT+GGG | + | chr1_3:58697534-58697553 | None:intergenic | 45.0% | |
| TCTGCTGACATACTTCAGCA+TGG | + | chr1_3:58697535-58697554 | None:intergenic | 45.0% | |
| !! | ATGTTGGCATTGGTGTTCCA+TGG | - | chr1_3:58698019-58698038 | Msa0128850:intron | 45.0% |
| CTCTCCGAATCCAAAATGCA+GGG | - | chr1_3:58698082-58698101 | Msa0128850:intron | 45.0% | |
| TCTCCGAATCCAAAATGCAG+GGG | - | chr1_3:58698083-58698102 | Msa0128850:intron | 45.0% | |
| TGAGATACATCCAACGGAAG+TGG | + | chr1_3:58698139-58698158 | None:intergenic | 45.0% | |
| ! | AGAGTGATGACTTCTGGAGA+GGG | + | chr1_3:58698396-58698415 | None:intergenic | 45.0% |
| ! | AAGAGTGATGACTTCTGGAG+AGG | + | chr1_3:58698397-58698416 | None:intergenic | 45.0% |
| CAAGGAAGAGTGATGACTTC+TGG | + | chr1_3:58698402-58698421 | None:intergenic | 45.0% | |
| CAGAAGTCATCACTCTTCCT+TGG | - | chr1_3:58698400-58698419 | Msa0128850:five_prime_UTR | 45.0% | |
| ! | AGAGGTATGCCAATACACGA+GGG | + | chr1_3:58698427-58698446 | None:intergenic | 45.0% |
| ! | AAGAGGTATGCCAATACACG+AGG | + | chr1_3:58698428-58698447 | None:intergenic | 45.0% |
| TTCACCCTAGAGAGGAACTT+TGG | - | chr1_3:58698563-58698582 | Msa0128850:five_prime_UTR | 45.0% | |
| !! | ATTTGAATTATAAATTTATA+TGG | - | chr1_3:58695891-58695910 | Msa0128850:intron | 5.0% |
| !! | TTTGAATTATAAATTTATAT+GGG | - | chr1_3:58695892-58695911 | Msa0128850:intron | 5.0% |
| !! | ATGTATATAAATTAAAAAAA+TGG | - | chr1_3:58697275-58697294 | Msa0128850:intron | 5.0% |
| GTTGCTGGGTGAAAAAGGAG+GGG | + | chr1_3:58691516-58691535 | None:intergenic | 50.0% | |
| ! | GCAATGACGGTGTTTGTTGC+TGG | + | chr1_3:58691531-58691550 | None:intergenic | 50.0% |
| ACAAACACCGTCATTGCCAC+CGG | - | chr1_3:58691534-58691553 | Msa0128850:three_prime_UTR | 50.0% | |
| TGTGGTCAAGCATTCAAGGG+AGG | - | chr1_3:58692451-58692470 | Msa0128850:intron | 50.0% | |
| CAAGCATTCAAGGGAGGTTG+TGG | - | chr1_3:58692457-58692476 | Msa0128850:intron | 50.0% | |
| ACCACACAAACAGCGTGGAT+GGG | + | chr1_3:58693545-58693564 | None:intergenic | 50.0% | |
| TACCACACAAACAGCGTGGA+TGG | + | chr1_3:58693546-58693565 | None:intergenic | 50.0% | |
| ! | AGAGCACTCCACTTGCTCAT+TGG | + | chr1_3:58694435-58694454 | None:intergenic | 50.0% |
| AAGGTGGAACAGCTACCTCT+GGG | + | chr1_3:58694524-58694543 | None:intergenic | 50.0% | |
| TAAGGTGGAACAGCTACCTC+TGG | + | chr1_3:58694525-58694544 | None:intergenic | 50.0% | |
| CCAACATCACCAATTGGCTG+TGG | + | chr1_3:58694861-58694880 | None:intergenic | 50.0% | |
| !! | CCACAGCCAATTGGTGATGT+TGG | - | chr1_3:58694858-58694877 | Msa0128850:intron | 50.0% |
| TGAAGGCTTGCCTATAGTGC+AGG | - | chr1_3:58694985-58695004 | Msa0128850:intron | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr1_3:58695483-58695502 | None:intergenic | 50.0% | |
| ! | TCCGCATGGCTCGAATTTTC+TGG | - | chr1_3:58696119-58696138 | Msa0128850:intron | 50.0% |
| GCCAGAAAATTCGAGCCATG+CGG | + | chr1_3:58696123-58696142 | None:intergenic | 50.0% | |
| !!! | GGCAGCTGTTACTTTTACCG+TGG | - | chr1_3:58696140-58696159 | Msa0128850:intron | 50.0% |
| ATCCGTGAGCAATATGGCAC+GGG | + | chr1_3:58696189-58696208 | None:intergenic | 50.0% | |
| CATCCGTGAGCAATATGGCA+CGG | + | chr1_3:58696190-58696209 | None:intergenic | 50.0% | |
| GACCTCATGGCCTGATTTAG+TGG | - | chr1_3:58696447-58696466 | Msa0128850:CDS | 50.0% | |
| TGCCACTAAATCAGGCCATG+AGG | + | chr1_3:58696452-58696471 | None:intergenic | 50.0% | |
| AGGATACCCGTGCATACAGA+CGG | - | chr1_3:58697090-58697109 | Msa0128850:intron | 50.0% | |
| AAGATGGACCTAGGCTACTG+TGG | - | chr1_3:58697477-58697496 | Msa0128850:CDS | 50.0% | |
| CTGACATACTTCAGCATGGG+CGG | + | chr1_3:58697531-58697550 | None:intergenic | 50.0% | |
| ! | CCTGCATTTTGGATTCGGAG+AGG | + | chr1_3:58698084-58698103 | None:intergenic | 50.0% |
| CCTCTCCGAATCCAAAATGC+AGG | - | chr1_3:58698081-58698100 | Msa0128850:intron | 50.0% | |
| CTCCGAATCCAAAATGCAGG+GGG | - | chr1_3:58698084-58698103 | Msa0128850:intron | 50.0% | |
| ! | GTCCCCCTGCATTTTGGATT+CGG | + | chr1_3:58698089-58698108 | None:intergenic | 50.0% |
| ! | AGCTAAGTCCCCCTGCATTT+TGG | + | chr1_3:58698095-58698114 | None:intergenic | 50.0% |
| ! | GTTTTCTTCGCCACTTCCGT+TGG | - | chr1_3:58698126-58698145 | Msa0128850:intron | 50.0% |
| !!! | GTTTTTGGTGCAGAGCTTGG+AGG | - | chr1_3:58698180-58698199 | Msa0128850:intron | 50.0% |
| AGCTTGGAGGACCAAGACTT+TGG | - | chr1_3:58698193-58698212 | Msa0128850:intron | 50.0% | |
| GCTTGGAGGACCAAGACTTT+GGG | - | chr1_3:58698194-58698213 | Msa0128850:intron | 50.0% | |
| AGGACCAAGACTTTGGGCAT+GGG | - | chr1_3:58698200-58698219 | Msa0128850:intron | 50.0% | |
| GTAACCCATGCCCAAAGTCT+TGG | + | chr1_3:58698207-58698226 | None:intergenic | 50.0% | |
| CAGCAGCATGAAAAACGCAC+AGG | + | chr1_3:58698229-58698248 | None:intergenic | 50.0% | |
| ! | GTGCGTTTTTCATGCTGCTG+TGG | - | chr1_3:58698229-58698248 | Msa0128850:intron | 50.0% |
| TTCCTTGGTCCCTCGTGTAT+TGG | - | chr1_3:58698415-58698434 | Msa0128850:five_prime_UTR | 50.0% | |
| GAATTCGCCGGTGGCAATGA+CGG | + | chr1_3:58691544-58691563 | None:intergenic | 55.0% | |
| TGGAGACTTACCGGCGAAGA+TGG | + | chr1_3:58691566-58691585 | None:intergenic | 55.0% | |
| CTAGGGGACTTGTATGCTGG+AGG | - | chr1_3:58692617-58692636 | Msa0128850:intron | 55.0% | |
| TTGGGACCTGGAACACTCGT+TGG | - | chr1_3:58693497-58693516 | Msa0128850:intron | 55.0% | |
| GCAGAACCAACGAGTGTTCC+AGG | + | chr1_3:58693506-58693525 | None:intergenic | 55.0% | |
| CCACACAAACAGCGTGGATG+GGG | + | chr1_3:58693544-58693563 | None:intergenic | 55.0% | |
| TGCAAGAGATGAGAGGCCAG+AGG | - | chr1_3:58694376-58694395 | Msa0128850:intron | 55.0% | |
| AGATGAGAGGCCAGAGGACT+GGG | - | chr1_3:58694382-58694401 | Msa0128850:intron | 55.0% | |
| AGGTGGAACAGCTACCTCTG+GGG | + | chr1_3:58694523-58694542 | None:intergenic | 55.0% | |
| GCGAGCCCAACATCACCAAT+TGG | + | chr1_3:58694867-58694886 | None:intergenic | 55.0% | |
| TCCGTGAGCAATATGGCACG+GGG | + | chr1_3:58696188-58696207 | None:intergenic | 55.0% | |
| CGTGCCATATTGCTCACGGA+TGG | - | chr1_3:58696188-58696207 | Msa0128850:intron | 55.0% | |
| GGATACCCGTGCATACAGAC+GGG | - | chr1_3:58697091-58697110 | Msa0128850:intron | 55.0% | |
| ! | TGCCACAGTGTGCCTTGTTG+AGG | - | chr1_3:58697504-58697523 | Msa0128850:CDS | 55.0% |
| GACCTCAACAAGGCACACTG+TGG | + | chr1_3:58697509-58697528 | None:intergenic | 55.0% | |
| GAGGACCAAGACTTTGGGCA+TGG | - | chr1_3:58698199-58698218 | Msa0128850:intron | 55.0% | |
| TGCCAATACACGAGGGACCA+AGG | + | chr1_3:58698420-58698439 | None:intergenic | 55.0% | |
| GCGAAGATGGAATTCGCCGG+TGG | + | chr1_3:58691553-58691572 | None:intergenic | 60.0% | |
| CCGGCGAAGATGGAATTCGC+CGG | + | chr1_3:58691556-58691575 | None:intergenic | 60.0% | |
| CCGGCGAATTCCATCTTCGC+CGG | - | chr1_3:58691553-58691572 | Msa0128850:three_prime_UTR | 60.0% | |
| CCCCATCCACGCTGTTTGTG+TGG | - | chr1_3:58693541-58693560 | Msa0128850:CDS | 60.0% | |
| GAGATGAGAGGCCAGAGGAC+TGG | - | chr1_3:58694381-58694400 | Msa0128850:intron | 60.0% | |
| CCGTGAGCAATATGGCACGG+GGG | + | chr1_3:58696187-58696206 | None:intergenic | 60.0% | |
| CCCCCGTGCCATATTGCTCA+CGG | - | chr1_3:58696184-58696203 | Msa0128850:intron | 60.0% | |
| CTGAAGTACAGGGGCGGATC+TGG | - | chr1_3:58696851-58696870 | Msa0128850:intron | 60.0% | |
| GCTCACCCGTCTGTATGCAC+GGG | + | chr1_3:58697099-58697118 | None:intergenic | 60.0% | |
| CGCTCACCCGTCTGTATGCA+CGG | + | chr1_3:58697100-58697119 | None:intergenic | 60.0% | |
| GGCAAGTGCCACAGTAGCCT+AGG | + | chr1_3:58697488-58697507 | None:intergenic | 60.0% | |
| AGCATGGGCGGACCTCAACA+AGG | + | chr1_3:58697519-58697538 | None:intergenic | 60.0% | |
| !! | GACTTCTGGAGAGGGCACCT+AGG | + | chr1_3:58698388-58698407 | None:intergenic | 60.0% |
| TCCTCTGGCACCCAGTCCTC+TGG | + | chr1_3:58694395-58694414 | None:intergenic | 65.0% | |
| GCCAGAGGACTGGGTGCCAG+AGG | - | chr1_3:58694391-58694410 | Msa0128850:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58691443 | 58698606 | 58691443 | ID=Msa0128850;Name=Msa0128850 |
| chr1_3 | mRNA | 58691443 | 58698606 | 58691443 | ID=Msa0128850-mRNA-1;Parent=Msa0128850;Name=Msa0128850-mRNA-1;_AED=0.09;_eAED=0.09;_QI=365|1|1|1|0.87|0.77|9|307|509 |
| chr1_3 | exon | 58691443 | 58692047 | 58691443 | ID=Msa0128850-mRNA-1:exon:18953;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58693516 | 58693645 | 58693516 | ID=Msa0128850-mRNA-1:exon:18952;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58693754 | 58693970 | 58693754 | ID=Msa0128850-mRNA-1:exon:18951;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58695262 | 58695386 | 58695262 | ID=Msa0128850-mRNA-1:exon:18950;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58695522 | 58695673 | 58695522 | ID=Msa0128850-mRNA-1:exon:18949;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58695771 | 58695889 | 58695771 | ID=Msa0128850-mRNA-1:exon:18948;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58696442 | 58696554 | 58696442 | ID=Msa0128850-mRNA-1:exon:18947;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58697411 | 58697878 | 58697411 | ID=Msa0128850-mRNA-1:exon:18946;Parent=Msa0128850-mRNA-1 |
| chr1_3 | exon | 58698334 | 58698606 | 58698334 | ID=Msa0128850-mRNA-1:exon:18945;Parent=Msa0128850-mRNA-1 |
| chr1_3 | five_prime_UTR | 58698334 | 58698606 | 58698334 | ID=Msa0128850-mRNA-1:five_prime_utr;Parent=Msa0128850-mRNA-1 |
| chr1_3 | five_prime_UTR | 58697787 | 58697878 | 58697787 | ID=Msa0128850-mRNA-1:five_prime_utr;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58697411 | 58697786 | 58697411 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58696442 | 58696554 | 58696442 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58695771 | 58695889 | 58695771 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58695522 | 58695673 | 58695522 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58695262 | 58695386 | 58695262 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58693754 | 58693970 | 58693754 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58693516 | 58693645 | 58693516 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | CDS | 58691750 | 58692047 | 58691750 | ID=Msa0128850-mRNA-1:cds;Parent=Msa0128850-mRNA-1 |
| chr1_3 | three_prime_UTR | 58691443 | 58691749 | 58691443 | ID=Msa0128850-mRNA-1:three_prime_utr;Parent=Msa0128850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
