Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129440 | sp|O64937|EF1A_ORYSJ | 77.136 | 433 | 95 | 3 | 5 | 434 | 4 | 435 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129440 | G7I2V3 | 80.427 | 562 | 56 | 5 | 1 | 525 | 1 | 545 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129440 | Msa0719700 | 0.814123 | 1.808738e-51 | -8.615850e-47 |
| Msa0129440 | Msa0790070 | 0.822670 | 2.091591e-53 | -8.615850e-47 |
| Msa0129440 | Msa1062600 | 0.802749 | 4.839994e-49 | -8.615850e-47 |
| Msa0129440 | Msa1432200 | -0.808953 | 2.403777e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129440 | MtrunA17_Chr1g0196251 | 84.788 | 401 | 35 | 2 | 1 | 400 | 1 | 376 | 0.0 | 695 |
| Msa0129440 | MtrunA17_Chr1g0200121 | 77.442 | 430 | 93 | 3 | 5 | 431 | 4 | 432 | 0.0 | 694 |
| Msa0129440 | MtrunA17_Chr1g0200071 | 77.674 | 430 | 92 | 3 | 5 | 431 | 4 | 432 | 0.0 | 694 |
| Msa0129440 | MtrunA17_Chr1g0200091 | 77.674 | 430 | 92 | 3 | 5 | 431 | 4 | 432 | 0.0 | 694 |
| Msa0129440 | MtrunA17_Chr4g0005781 | 77.209 | 430 | 94 | 3 | 5 | 431 | 4 | 432 | 0.0 | 692 |
| Msa0129440 | MtrunA17_Chr6g0458111 | 75.520 | 433 | 102 | 3 | 5 | 434 | 4 | 435 | 0.0 | 683 |
| Msa0129440 | MtrunA17_Chr6g0458091 | 75.520 | 433 | 102 | 3 | 5 | 434 | 4 | 435 | 0.0 | 683 |
| Msa0129440 | MtrunA17_Chr1g0193591 | 77.442 | 430 | 93 | 3 | 5 | 431 | 4 | 432 | 0.0 | 680 |
| Msa0129440 | MtrunA17_Chr1g0156421 | 72.727 | 429 | 113 | 3 | 6 | 431 | 5 | 432 | 0.0 | 660 |
| Msa0129440 | MtrunA17_Chr1g0204031 | 72.897 | 428 | 111 | 4 | 5 | 431 | 4 | 427 | 0.0 | 641 |
| Msa0129440 | MtrunA17_Chr1g0150331 | 72.979 | 433 | 84 | 5 | 5 | 431 | 4 | 409 | 0.0 | 630 |
| Msa0129440 | MtrunA17_Chr8g0340771 | 71.889 | 434 | 116 | 4 | 3 | 431 | 2 | 434 | 0.0 | 625 |
| Msa0129440 | MtrunA17_Chr8g0336511 | 76.235 | 324 | 74 | 2 | 6 | 326 | 70 | 393 | 0.0 | 514 |
| Msa0129440 | MtrunA17_Chr5g0415391 | 63.682 | 402 | 142 | 3 | 40 | 438 | 1 | 401 | 4.89e-180 | 512 |
| Msa0129440 | MtrunA17_Chr2g0319341 | 65.805 | 348 | 109 | 5 | 103 | 445 | 1 | 343 | 8.49e-158 | 456 |
| Msa0129440 | MtrunA17_Chr2g0298371 | 62.270 | 326 | 100 | 5 | 103 | 423 | 1 | 308 | 3.46e-138 | 401 |
| Msa0129440 | MtrunA17_Chr8g0340371 | 68.776 | 237 | 73 | 1 | 3 | 238 | 2 | 238 | 1.33e-114 | 338 |
| Msa0129440 | MtrunA17_Chr1g0210931 | 59.220 | 282 | 63 | 4 | 154 | 433 | 1 | 232 | 4.81e-106 | 317 |
| Msa0129440 | MtrunA17_Chr1g0210931 | 44.144 | 111 | 46 | 5 | 418 | 517 | 152 | 257 | 2.91e-12 | 67.0 |
| Msa0129440 | MtrunA17_Chr2g0318291 | 65.455 | 220 | 71 | 3 | 6 | 222 | 7 | 224 | 1.76e-97 | 294 |
| Msa0129440 | MtrunA17_Chr6g0483121 | 34.895 | 427 | 268 | 7 | 6 | 425 | 89 | 512 | 5.71e-85 | 272 |
| Msa0129440 | MtrunA17_Chr8g0392641 | 34.272 | 426 | 270 | 7 | 5 | 423 | 143 | 565 | 7.38e-80 | 260 |
| Msa0129440 | MtrunA17_Chr8g0380091 | 34.396 | 439 | 272 | 8 | 3 | 431 | 270 | 702 | 5.21e-79 | 261 |
| Msa0129440 | MtrunA17_Chr1g0204041 | 76.623 | 154 | 34 | 1 | 3 | 154 | 2 | 155 | 3.40e-78 | 243 |
| Msa0129440 | MtrunA17_Chr1g0156411 | 79.286 | 140 | 27 | 1 | 7 | 144 | 10 | 149 | 6.70e-73 | 228 |
| Msa0129440 | MtrunA17_Chr1g0200111 | 61.017 | 177 | 57 | 3 | 263 | 428 | 1 | 176 | 1.78e-64 | 207 |
| Msa0129440 | MtrunA17_Chr2g0318281 | 52.252 | 222 | 97 | 4 | 243 | 463 | 6 | 219 | 6.75e-63 | 205 |
| Msa0129440 | MtrunA17_Chr8g0340361 | 52.973 | 185 | 69 | 4 | 263 | 431 | 1 | 183 | 1.19e-54 | 182 |
| Msa0129440 | MtrunA17_Chr8g0341021 | 74.038 | 104 | 27 | 0 | 1 | 104 | 1 | 104 | 4.90e-50 | 167 |
| Msa0129440 | MtrunA17_Chr2g0298381 | 80.412 | 97 | 19 | 0 | 4 | 100 | 3 | 99 | 1.05e-49 | 166 |
| Msa0129440 | MtrunA17_Chr4g0026961 | 48.718 | 195 | 83 | 5 | 194 | 385 | 32 | 212 | 4.65e-49 | 168 |
| Msa0129440 | MtrunA17_Chr1g0211481 | 78.481 | 79 | 17 | 0 | 6 | 84 | 4 | 82 | 1.27e-36 | 131 |
| Msa0129440 | MtrunA17_Chr2g0319351 | 82.667 | 75 | 13 | 0 | 4 | 78 | 3 | 77 | 1.64e-36 | 130 |
| Msa0129440 | MtrunA17_Chr7g0259481 | 27.982 | 436 | 252 | 14 | 6 | 428 | 61 | 447 | 4.25e-35 | 137 |
| Msa0129440 | MtrunA17_Chr3g0116821 | 28.217 | 443 | 249 | 17 | 5 | 425 | 89 | 484 | 2.19e-30 | 124 |
| Msa0129440 | MtrunA17_Chr8g0341041 | 73.239 | 71 | 19 | 0 | 212 | 282 | 2 | 72 | 2.06e-26 | 105 |
| Msa0129440 | MtrunA17_Chr8g0341041 | 53.846 | 65 | 29 | 1 | 373 | 436 | 99 | 163 | 3.28e-15 | 73.6 |
| Msa0129440 | MtrunA17_Chr1g0200101 | 60.920 | 87 | 28 | 2 | 153 | 235 | 29 | 113 | 2.79e-26 | 103 |
| Msa0129440 | MtrunA17_Chr1g0200101 | 69.388 | 49 | 15 | 0 | 22 | 70 | 2 | 50 | 1.40e-15 | 73.2 |
| Msa0129440 | MtrunA17_Chr2g0287231 | 30.453 | 243 | 139 | 6 | 4 | 243 | 12 | 227 | 2.94e-26 | 107 |
| Msa0129440 | MtrunA17_Chr7g0261801 | 60.606 | 66 | 23 | 1 | 154 | 219 | 1 | 63 | 4.36e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129440 | AT1G07920.1 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07940.4 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07940.1 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07940.2 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07940.3 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT5G60390.3 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT5G60390.1 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT5G60390.2 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07930.1 | 74.664 | 446 | 109 | 3 | 5 | 447 | 4 | 448 | 0.0 | 686 |
| Msa0129440 | AT1G07930.2 | 81.028 | 253 | 46 | 1 | 5 | 255 | 4 | 256 | 3.84e-151 | 437 |
| Msa0129440 | AT1G07930.2 | 58.824 | 119 | 47 | 2 | 330 | 447 | 254 | 371 | 5.29e-35 | 135 |
| Msa0129440 | AT1G18070.1 | 33.565 | 432 | 277 | 7 | 4 | 428 | 97 | 525 | 4.20e-81 | 263 |
| Msa0129440 | AT1G18070.2 | 33.565 | 432 | 277 | 7 | 4 | 428 | 97 | 525 | 4.20e-81 | 263 |
| Msa0129440 | AT1G18070.3 | 32.880 | 441 | 279 | 7 | 4 | 428 | 97 | 536 | 2.27e-78 | 256 |
| Msa0129440 | AT5G10630.1 | 32.648 | 438 | 275 | 9 | 4 | 427 | 235 | 666 | 2.47e-73 | 246 |
| Msa0129440 | AT5G10630.5 | 32.648 | 438 | 275 | 9 | 4 | 427 | 236 | 667 | 2.52e-73 | 246 |
| Msa0129440 | AT5G10630.2 | 32.648 | 438 | 275 | 9 | 4 | 427 | 236 | 667 | 2.52e-73 | 246 |
| Msa0129440 | AT5G10630.3 | 32.648 | 438 | 275 | 9 | 4 | 427 | 306 | 737 | 8.67e-73 | 246 |
| Msa0129440 | AT5G10630.4 | 32.648 | 438 | 275 | 9 | 4 | 427 | 311 | 742 | 1.13e-72 | 246 |
| Msa0129440 | AT4G20360.1 | 29.157 | 439 | 250 | 15 | 5 | 425 | 76 | 471 | 3.72e-35 | 137 |
| Msa0129440 | AT4G20360.2 | 29.157 | 439 | 250 | 15 | 5 | 425 | 76 | 471 | 3.72e-35 | 137 |
| Msa0129440 | AT4G02930.1 | 27.460 | 437 | 254 | 14 | 6 | 428 | 65 | 452 | 3.77e-33 | 132 |
| Msa0129440 | AT1G35550.1 | 58.511 | 94 | 38 | 1 | 339 | 431 | 5 | 98 | 1.09e-31 | 118 |
| Msa0129440 | AT5G08650.2 | 27.157 | 313 | 168 | 11 | 10 | 310 | 88 | 352 | 1.22e-13 | 73.9 |
| Msa0129440 | AT5G08650.1 | 27.157 | 313 | 168 | 11 | 10 | 310 | 88 | 352 | 1.61e-13 | 73.9 |
Find 147 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTCTCCAAGAATT+TGG | 0.123160 | 1_3:-59363087 | None:intergenic |
| ATACCTACCCTTAGAGTATT+TGG | 0.130334 | 1_3:-59362427 | None:intergenic |
| TTCTCCAACAAAACCAGATA+TGG | 0.236979 | 1_3:-59362523 | None:intergenic |
| AACATGAGAAGTAAATTTAA+TGG | 0.238423 | 1_3:-59362922 | None:intergenic |
| ATTCCATTTGTTCCCATATC+TGG | 0.240138 | 1_3:+59362510 | Msa0129440:CDS |
| CATATTAACATCGTATTTCT+TGG | 0.257748 | 1_3:+59361876 | Msa0129440:CDS |
| GCCTCTTCGGTTCTTTGATT+TGG | 0.261061 | 1_3:-59362611 | None:intergenic |
| ATAGCCAACCTTCCTCAAAA+AGG | 0.296356 | 1_3:-59362475 | None:intergenic |
| ACCCTGAAGAATGGTGATTC+TGG | 0.297405 | 1_3:+59363266 | Msa0129440:CDS |
| TTTGGTCGATAGCTTCAAAA+AGG | 0.298256 | 1_3:-59362593 | None:intergenic |
| AACTACACCCAAATACTCTA+AGG | 0.307481 | 1_3:+59362419 | Msa0129440:CDS |
| CAAGCTTGGCGGTATTAAAA+AGG | 0.326591 | 1_3:+59361944 | Msa0129440:CDS |
| AATGAGAGTGCAGTGGTATT+TGG | 0.329020 | 1_3:-59362105 | None:intergenic |
| CCCCAGAATCACCATTCTTC+AGG | 0.334262 | 1_3:-59363268 | None:intergenic |
| TGAGCAGGAGCCCAAATTCT+TGG | 0.334339 | 1_3:+59363076 | Msa0129440:CDS |
| CTTCAGTTTGCACCCCAGTT+GGG | 0.336275 | 1_3:-59362755 | None:intergenic |
| CCCTGAAGAATGGTGATTCT+GGG | 0.347297 | 1_3:+59363267 | Msa0129440:CDS |
| GGTCTCATCGAGGCCCTTCC+TGG | 0.352054 | 1_3:+59362804 | Msa0129440:CDS |
| GTTTACATGATTGGAGGAAT+TGG | 0.353938 | 1_3:+59362669 | Msa0129440:CDS |
| ATCCAGTCTGTTTACATGAT+TGG | 0.356086 | 1_3:+59362660 | Msa0129440:CDS |
| TACCTACCCTTAGAGTATTT+GGG | 0.363508 | 1_3:-59362426 | None:intergenic |
| TTTCTTGGTCATGTCGACTC+TGG | 0.367175 | 1_3:+59361891 | Msa0129440:CDS |
| GAAGAAAGCGAAGACGTATC+AGG | 0.380345 | 1_3:+59363238 | Msa0129440:CDS |
| CTCATCATTGATTCCACAAC+TGG | 0.380881 | 1_3:+59362197 | Msa0129440:CDS |
| TCACCATTCTCCAAGAATTT+GGG | 0.381691 | 1_3:-59363086 | None:intergenic |
| GCAAAAGTCACCGCCATTCC+TGG | 0.382256 | 1_3:-59362732 | None:intergenic |
| AATTTAATGGCTTCCATGGC+TGG | 0.387563 | 1_3:-59362909 | None:intergenic |
| GAAGAAAAGGAAGGAGGATC+AGG | 0.390903 | 1_3:+59363430 | Msa0129440:CDS |
| GCTCTTCTTGCCTATGCTCT+TGG | 0.393731 | 1_3:+59362260 | Msa0129440:CDS |
| TGTTAAGAACATGTCTGTTA+AGG | 0.398012 | 1_3:+59362845 | Msa0129440:CDS |
| GGCTTATCTGATGGCCTCTT+CGG | 0.413447 | 1_3:-59362624 | None:intergenic |
| AGCTTCTACCACGATGGGCT+TGG | 0.417027 | 1_3:-59363309 | None:intergenic |
| CTTGATGAAATCTCTGTGTC+CGG | 0.421534 | 1_3:-59362135 | None:intergenic |
| TCAAGGATAGGTTGAAGAAA+AGG | 0.423588 | 1_3:+59363417 | Msa0129440:CDS |
| ACTTCAGTTTGCACCCCAGT+TGG | 0.434027 | 1_3:-59362756 | None:intergenic |
| AAACCAGATATGGGAACAAA+TGG | 0.436814 | 1_3:-59362513 | None:intergenic |
| GCCCTTCCTGGTGACATTGT+GGG | 0.446835 | 1_3:+59362816 | Msa0129440:CDS |
| TTGATGAAATCTCTGTGTCC+GGG | 0.450681 | 1_3:-59362134 | None:intergenic |
| AGGCTCTACCACCATGGGCT+TGG | 0.457938 | 1_3:-59363132 | None:intergenic |
| TTGTAATATTGTGCTTGAGC+AGG | 0.460239 | 1_3:+59363061 | Msa0129440:CDS |
| TCTCCAACAAAACCAGATAT+GGG | 0.461660 | 1_3:-59362522 | None:intergenic |
| AGTAAATTTAATGGCTTCCA+TGG | 0.461788 | 1_3:-59362913 | None:intergenic |
| GTATTTGGTTGTCTCAAACT+TGG | 0.462120 | 1_3:-59362090 | None:intergenic |
| TTCTTGGTCATGTCGACTCT+GGG | 0.463114 | 1_3:+59361892 | Msa0129440:CDS |
| AGCGTTCATTCAAGTATGCT+TGG | 0.463969 | 1_3:+59362009 | Msa0129440:CDS |
| TTCATCAAGAACATGTTAAC+CGG | 0.467333 | 1_3:+59362149 | Msa0129440:CDS |
| TGGATCATCGTTGGAGTTTG+AGG | 0.467858 | 1_3:-59362889 | None:intergenic |
| AAACAGACTGGATTGGTAAT+CGG | 0.468921 | 1_3:-59362650 | None:intergenic |
| TGCACTCTCATTGACGCCCC+CGG | 0.472324 | 1_3:+59362116 | Msa0129440:CDS |
| TTCTACCACGATGGGCTTGG+TGG | 0.479765 | 1_3:-59363306 | None:intergenic |
| ACTAATGGGTGATGATGAAA+AGG | 0.484147 | 1_3:+59361851 | None:intergenic |
| AATCCAACGGGCACAGTTTG+AGG | 0.486804 | 1_3:-59363392 | None:intergenic |
| AGGAAGGAGGATCAGGATGC+AGG | 0.487697 | 1_3:+59363437 | Msa0129440:CDS |
| TCTGGGAAGTCAACCACTGC+TGG | 0.494688 | 1_3:+59361909 | Msa0129440:CDS |
| GCGTTCATTCAAGTATGCTT+GGG | 0.497325 | 1_3:+59362010 | Msa0129440:CDS |
| GGCACAGTTTGAGGCACAGT+TGG | 0.504148 | 1_3:-59363383 | None:intergenic |
| GGCCCTTCCTGGTGACATTG+TGG | 0.504323 | 1_3:+59362815 | Msa0129440:CDS |
| CCCAGAATCACCATTCTTCA+GGG | 0.505435 | 1_3:-59363267 | None:intergenic |
| GGTTTGTTAACAAACTTGAC+AGG | 0.506060 | 1_3:+59363036 | Msa0129440:CDS |
| CTCAAGGCTGAGCGTGAAAG+AGG | 0.511631 | 1_3:+59362044 | Msa0129440:CDS |
| GAGGTGTGGCAGTCAACAAC+AGG | 0.511861 | 1_3:-59362990 | None:intergenic |
| ACACCTCCCACATTCCTGTC+AGG | 0.513123 | 1_3:+59363006 | Msa0129440:CDS |
| GAATAAGGCTCTACCACCAT+GGG | 0.515040 | 1_3:-59363137 | None:intergenic |
| CCAGTCATAACACGACCAAC+AGG | 0.515746 | 1_3:-59362699 | None:intergenic |
| CCTGTTGGTCGTGTTATGAC+TGG | 0.525185 | 1_3:+59362699 | Msa0129440:CDS |
| CCGTTGGATTTGTCAAGGAT+AGG | 0.527120 | 1_3:+59363405 | Msa0129440:CDS |
| CAGTCTGTTTACATGATTGG+AGG | 0.528372 | 1_3:+59362663 | Msa0129440:CDS |
| AACTGGGGTGCAAACTGAAG+TGG | 0.528426 | 1_3:+59362758 | Msa0129440:CDS |
| CTCCAATCATGTAAACAGAC+TGG | 0.529766 | 1_3:-59362662 | None:intergenic |
| TGAGAACAGCACAGTCAGCT+AGG | 0.530586 | 1_3:-59362178 | None:intergenic |
| GAGCCCAAATTCTTGGAGAA+TGG | 0.531029 | 1_3:+59363083 | Msa0129440:CDS |
| ACTAACCTTGACTGGTACAA+AGG | 0.533811 | 1_3:+59362564 | Msa0129440:CDS |
| CTATCCTTGACAAATCCAAC+GGG | 0.537107 | 1_3:-59363404 | None:intergenic |
| TGGCGAGCTTCTACCACGAT+GGG | 0.537485 | 1_3:-59363314 | None:intergenic |
| ATTGTCTTTAATCACCCTGA+TGG | 0.538431 | 1_3:+59362945 | Msa0129440:CDS |
| AAATTCTTGGAGAATGGTGA+TGG | 0.539259 | 1_3:+59363089 | Msa0129440:CDS |
| ACATTCCTGTCAGGTTCGAT+AGG | 0.539310 | 1_3:+59363015 | Msa0129440:CDS |
| TTCCATGGCTGGATCATCGT+TGG | 0.541665 | 1_3:-59362898 | None:intergenic |
| TTCAGTTTGCACCCCAGTTG+GGG | 0.542574 | 1_3:-59362754 | None:intergenic |
| TCCCACAATGTCACCAGGAA+GGG | 0.549053 | 1_3:-59362817 | None:intergenic |
| GGTCATTTGATCTACAAGCT+TGG | 0.551826 | 1_3:+59361930 | Msa0129440:CDS |
| TTGATTCACACCAAGAGCAT+AGG | 0.553135 | 1_3:-59362270 | None:intergenic |
| ACGCGTCAAACTGTCGCTGT+TGG | 0.556425 | 1_3:+59363197 | Msa0129440:CDS |
| TCTACCACCATGGGCTTGGT+TGG | 0.557020 | 1_3:-59363128 | None:intergenic |
| GGGCCTCGATGAGACCTTCG+TGG | 0.559901 | 1_3:-59362797 | None:intergenic |
| TGATGAAATCTCTGTGTCCG+GGG | 0.561129 | 1_3:-59362133 | None:intergenic |
| ACTGGGGTGCAAACTGAAGT+GGG | 0.561155 | 1_3:+59362759 | Msa0129440:CDS |
| CATTTGATCTACAAGCTTGG+CGG | 0.561645 | 1_3:+59361933 | Msa0129440:CDS |
| GGATAGGTTGAAGAAAAGGA+AGG | 0.561915 | 1_3:+59363421 | Msa0129440:CDS |
| CCTGATGGCAAAATTCCACT+TGG | 0.562991 | 1_3:+59362960 | Msa0129440:CDS |
| GGTTGTCTCAAACTTGGACA+TGG | 0.565353 | 1_3:-59362084 | None:intergenic |
| AATTCTTGGAGAATGGTGAT+GGG | 0.565487 | 1_3:+59363090 | Msa0129440:CDS |
| GGAATTGGAGTCGTTCCTGT+TGG | 0.569737 | 1_3:+59362684 | Msa0129440:CDS |
| ACAAACCTATCGAACCTGAC+AGG | 0.572871 | 1_3:-59363020 | None:intergenic |
| GCAAACTGAAGTGGGGTCTG+TGG | 0.575499 | 1_3:+59362767 | Msa0129440:CDS |
| AGCGCTCTACTAACCTTGAC+TGG | 0.576756 | 1_3:+59362556 | Msa0129440:CDS |
| TAGGTTGAAGAAAAGGAAGG+AGG | 0.577864 | 1_3:+59363424 | Msa0129440:CDS |
| ATCCCACAATGTCACCAGGA+AGG | 0.588205 | 1_3:-59362818 | None:intergenic |
| ACAGTCAGCTAGGGACGTGC+CGG | 0.591534 | 1_3:-59362168 | None:intergenic |
| GGCAAGAAGAGCATGTTCAC+CGG | 0.592106 | 1_3:-59362249 | None:intergenic |
| ACTGGTGTGGAGGGTCAGAC+CGG | 0.593264 | 1_3:+59362230 | Msa0129440:CDS |
| TGGGACCTTTGTACCAGTCA+AGG | 0.594819 | 1_3:-59362569 | None:intergenic |
| TATCGAACCTGACAGGAATG+TGG | 0.595501 | 1_3:-59363013 | None:intergenic |
| TCTACCACGATGGGCTTGGT+GGG | 0.595568 | 1_3:-59363305 | None:intergenic |
| CAGGATGTGACCCTGAAGAA+TGG | 0.597590 | 1_3:+59363257 | Msa0129440:CDS |
| TGAATAAGGCTCTACCACCA+TGG | 0.601922 | 1_3:-59363138 | None:intergenic |
| GAGAACAGCACAGTCAGCTA+GGG | 0.604178 | 1_3:-59362177 | None:intergenic |
| ACTACACCCAAATACTCTAA+GGG | 0.604905 | 1_3:+59362420 | Msa0129440:CDS |
| TGTGCCCGTTGGATTTGTCA+AGG | 0.604956 | 1_3:+59363400 | Msa0129440:CDS |
| AATCGGAGAGGCTTATCTGA+TGG | 0.606723 | 1_3:-59362633 | None:intergenic |
| CTCCAACGATGATCCAGCCA+TGG | 0.610686 | 1_3:+59362896 | Msa0129440:CDS |
| TGTCGCTGTTGGAATCATCA+AGG | 0.614162 | 1_3:+59363208 | Msa0129440:CDS |
| ACTGTAAAACGAGCAAGTGA+AGG | 0.615698 | 1_3:-59363167 | None:intergenic |
| CCTGAAGAATGGTGATTCTG+GGG | 0.623820 | 1_3:+59363268 | Msa0129440:CDS |
| ATCGAACCTGACAGGAATGT+GGG | 0.625089 | 1_3:-59363012 | None:intergenic |
| GTGCCTCAAACTGTGCCCGT+TGG | 0.625594 | 1_3:+59363389 | Msa0129440:CDS |
| CCTATCCTTGACAAATCCAA+CGG | 0.625599 | 1_3:-59363405 | None:intergenic |
| GATGAAATCTCTGTGTCCGG+GGG | 0.626260 | 1_3:-59362132 | None:intergenic |
| AGTCTCAAAACTACCAGTTG+TGG | 0.628159 | 1_3:-59362210 | None:intergenic |
| ACCAAATCAAAGAACCGAAG+AGG | 0.629290 | 1_3:+59362610 | Msa0129440:CDS |
| AATGATTCCAACCAAGCCCA+TGG | 0.631313 | 1_3:+59363121 | Msa0129440:CDS |
| ATCATGTAAACAGACTGGAT+TGG | 0.632280 | 1_3:-59362657 | None:intergenic |
| TTGGGTACTTGACAAGCTCA+AGG | 0.633687 | 1_3:+59362028 | Msa0129440:CDS |
| ATGACTGGTGTCTTGAAACC+AGG | 0.642546 | 1_3:+59362714 | Msa0129440:CDS |
| ATGGCGAGCTTCTACCACGA+TGG | 0.644669 | 1_3:-59363315 | None:intergenic |
| TTAAATCCCACAATGTCACC+AGG | 0.648032 | 1_3:-59362822 | None:intergenic |
| TGACAGGAATGTGGGAGGTG+TGG | 0.650950 | 1_3:-59363004 | None:intergenic |
| AATGATCTGCTGCTGCAACA+AGG | 0.655864 | 1_3:+59362292 | Msa0129440:CDS |
| GGAGTGAATGATGATAGTTA+TGG | 0.660119 | 1_3:-59363334 | None:intergenic |
| GACTGGATTGGTAATCGGAG+AGG | 0.662580 | 1_3:-59362645 | None:intergenic |
| GTAGATCAAATGACCAGCAG+TGG | 0.668207 | 1_3:-59361922 | None:intergenic |
| AAGGAGGATCAGGATGCAGG+AGG | 0.673232 | 1_3:+59363440 | Msa0129440:CDS |
| CTGGGGTGCAAACTGAAGTG+GGG | 0.680721 | 1_3:+59362760 | Msa0129440:CDS |
| CACCCAAATACTCTAAGGGT+AGG | 0.688916 | 1_3:+59362424 | Msa0129440:CDS |
| TGCCTCTGACAGTAAAACGT+GGG | 0.690401 | 1_3:-59363355 | None:intergenic |
| TGGTGTCTTGAAACCAGGAA+TGG | 0.690662 | 1_3:+59362719 | Msa0129440:CDS |
| GGGCGTCAATGAGAGTGCAG+TGG | 0.692540 | 1_3:-59362112 | None:intergenic |
| TCTGTTAAGGATCTCAAGCG+AGG | 0.696365 | 1_3:+59362858 | Msa0129440:CDS |
| ATGCCTCTGACAGTAAAACG+TGG | 0.699093 | 1_3:-59363356 | None:intergenic |
| ATTCTTGGAGAATGGTGATG+GGG | 0.711641 | 1_3:+59363091 | Msa0129440:CDS |
| ACAACAGGTGTATAGCCAAG+TGG | 0.715229 | 1_3:-59362975 | None:intergenic |
| TCTGTGGAGATGCACCACGA+AGG | 0.722148 | 1_3:+59362783 | Msa0129440:CDS |
| GATTCCAACCAAGCCCATGG+TGG | 0.724767 | 1_3:+59363124 | Msa0129440:CDS |
| TGTCTTGAAACCAGGAATGG+CGG | 0.726983 | 1_3:+59362722 | Msa0129440:CDS |
| GAACCTGACAGGAATGTGGG+AGG | 0.727653 | 1_3:-59363009 | None:intergenic |
| GATTCCCACCAAGCCCATCG+TGG | 0.738518 | 1_3:+59363301 | Msa0129440:CDS |
| GCACCACGAAGGTCTCATCG+AGG | 0.783900 | 1_3:+59362794 | Msa0129440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAAATACAACTTTAAA+GGG | - | chr1_3:59362338-59362357 | None:intergenic | 15.0% |
| !! | ATAAACAAATACAACTTTAA+AGG | - | chr1_3:59362339-59362358 | None:intergenic | 15.0% |
| !! | TAAACAAATACAACTTTAAA+GGG | - | chr1_3:59362338-59362357 | None:intergenic | 15.0% |
| !! | ATAAACAAATACAACTTTAA+AGG | - | chr1_3:59362339-59362358 | None:intergenic | 15.0% |
| !!! | AAACAAATACAACTTTAAAG+GGG | - | chr1_3:59362337-59362356 | None:intergenic | 20.0% |
| !! | AACATGAGAAGTAAATTTAA+TGG | - | chr1_3:59362925-59362944 | None:intergenic | 20.0% |
| !!! | AAACAAATACAACTTTAAAG+GGG | - | chr1_3:59362337-59362356 | None:intergenic | 20.0% |
| !! | AACATGAGAAGTAAATTTAA+TGG | - | chr1_3:59362925-59362944 | None:intergenic | 20.0% |
| ! | CATATTAACATCGTATTTCT+TGG | + | chr1_3:59361876-59361895 | Msa0129440:CDS | 25.0% |
| !!! | AGTGAAGGATATTTTGAATA+AGG | - | chr1_3:59363155-59363174 | None:intergenic | 25.0% |
| ! | CATATTAACATCGTATTTCT+TGG | + | chr1_3:59361876-59361895 | Msa0129440:CDS | 25.0% |
| !!! | AGTGAAGGATATTTTGAATA+AGG | - | chr1_3:59363155-59363174 | None:intergenic | 25.0% |
| TTCATCAAGAACATGTTAAC+CGG | + | chr1_3:59362149-59362168 | Msa0129440:CDS | 30.0% | |
| TTATCATCTATCTTGACAGA+TGG | + | chr1_3:59362392-59362411 | Msa0129440:intron | 30.0% | |
| TGTTAAGAACATGTCTGTTA+AGG | + | chr1_3:59362845-59362864 | Msa0129440:CDS | 30.0% | |
| AGTAAATTTAATGGCTTCCA+TGG | - | chr1_3:59362916-59362935 | None:intergenic | 30.0% | |
| ! | ATTGAAGAAGTGAATTTTGC+TGG | + | chr1_3:59363494-59363513 | Msa0129440:CDS | 30.0% |
| TTCATCAAGAACATGTTAAC+CGG | + | chr1_3:59362149-59362168 | Msa0129440:CDS | 30.0% | |
| TTATCATCTATCTTGACAGA+TGG | + | chr1_3:59362392-59362411 | Msa0129440:intron | 30.0% | |
| TGTTAAGAACATGTCTGTTA+AGG | + | chr1_3:59362845-59362864 | Msa0129440:CDS | 30.0% | |
| AGTAAATTTAATGGCTTCCA+TGG | - | chr1_3:59362916-59362935 | None:intergenic | 30.0% | |
| ! | ATTGAAGAAGTGAATTTTGC+TGG | + | chr1_3:59363494-59363513 | Msa0129440:CDS | 30.0% |
| GTATTTGGTTGTCTCAAACT+TGG | - | chr1_3:59362093-59362112 | None:intergenic | 35.0% | |
| ! | AAATACAACTTTAAAGGGGC+TGG | - | chr1_3:59362333-59362352 | None:intergenic | 35.0% |
| AACTACACCCAAATACTCTA+AGG | + | chr1_3:59362419-59362438 | Msa0129440:CDS | 35.0% | |
| ACTACACCCAAATACTCTAA+GGG | + | chr1_3:59362420-59362439 | Msa0129440:CDS | 35.0% | |
| ! | TACCTACCCTTAGAGTATTT+GGG | - | chr1_3:59362429-59362448 | None:intergenic | 35.0% |
| ! | ATACCTACCCTTAGAGTATT+TGG | - | chr1_3:59362430-59362449 | None:intergenic | 35.0% |
| ATTCCATTTGTTCCCATATC+TGG | + | chr1_3:59362510-59362529 | Msa0129440:CDS | 35.0% | |
| AAACCAGATATGGGAACAAA+TGG | - | chr1_3:59362516-59362535 | None:intergenic | 35.0% | |
| TCTCCAACAAAACCAGATAT+GGG | - | chr1_3:59362525-59362544 | None:intergenic | 35.0% | |
| TTCTCCAACAAAACCAGATA+TGG | - | chr1_3:59362526-59362545 | None:intergenic | 35.0% | |
| TTGGTCGATAGCTTCAAAAA+GGG | - | chr1_3:59362595-59362614 | None:intergenic | 35.0% | |
| TTTGGTCGATAGCTTCAAAA+AGG | - | chr1_3:59362596-59362615 | None:intergenic | 35.0% | |
| !! | AAACAGACTGGATTGGTAAT+CGG | - | chr1_3:59362653-59362672 | None:intergenic | 35.0% |
| ATCATGTAAACAGACTGGAT+TGG | - | chr1_3:59362660-59362679 | None:intergenic | 35.0% | |
| ATCCAGTCTGTTTACATGAT+TGG | + | chr1_3:59362660-59362679 | Msa0129440:CDS | 35.0% | |
| GTTTACATGATTGGAGGAAT+TGG | + | chr1_3:59362669-59362688 | Msa0129440:CDS | 35.0% | |
| ATTGTCTTTAATCACCCTGA+TGG | + | chr1_3:59362945-59362964 | Msa0129440:CDS | 35.0% | |
| !! | GGTTTGTTAACAAACTTGAC+AGG | + | chr1_3:59363036-59363055 | Msa0129440:CDS | 35.0% |
| TTGTAATATTGTGCTTGAGC+AGG | + | chr1_3:59363061-59363080 | Msa0129440:CDS | 35.0% | |
| TCACCATTCTCCAAGAATTT+GGG | - | chr1_3:59363089-59363108 | None:intergenic | 35.0% | |
| ATCACCATTCTCCAAGAATT+TGG | - | chr1_3:59363090-59363109 | None:intergenic | 35.0% | |
| AAATTCTTGGAGAATGGTGA+TGG | + | chr1_3:59363089-59363108 | Msa0129440:CDS | 35.0% | |
| AATTCTTGGAGAATGGTGAT+GGG | + | chr1_3:59363090-59363109 | Msa0129440:CDS | 35.0% | |
| GGAGTGAATGATGATAGTTA+TGG | - | chr1_3:59363337-59363356 | None:intergenic | 35.0% | |
| ! | TCAAGGATAGGTTGAAGAAA+AGG | + | chr1_3:59363417-59363436 | Msa0129440:CDS | 35.0% |
| ! | TCAGCATCGAAGAAAAAGAA+GGG | + | chr1_3:59363470-59363489 | Msa0129440:CDS | 35.0% |
| GTATTTGGTTGTCTCAAACT+TGG | - | chr1_3:59362093-59362112 | None:intergenic | 35.0% | |
| ! | AAATACAACTTTAAAGGGGC+TGG | - | chr1_3:59362333-59362352 | None:intergenic | 35.0% |
| AACTACACCCAAATACTCTA+AGG | + | chr1_3:59362419-59362438 | Msa0129440:CDS | 35.0% | |
| ACTACACCCAAATACTCTAA+GGG | + | chr1_3:59362420-59362439 | Msa0129440:CDS | 35.0% | |
| ! | TACCTACCCTTAGAGTATTT+GGG | - | chr1_3:59362429-59362448 | None:intergenic | 35.0% |
| ! | ATACCTACCCTTAGAGTATT+TGG | - | chr1_3:59362430-59362449 | None:intergenic | 35.0% |
| ATTCCATTTGTTCCCATATC+TGG | + | chr1_3:59362510-59362529 | Msa0129440:CDS | 35.0% | |
| AAACCAGATATGGGAACAAA+TGG | - | chr1_3:59362516-59362535 | None:intergenic | 35.0% | |
| TCTCCAACAAAACCAGATAT+GGG | - | chr1_3:59362525-59362544 | None:intergenic | 35.0% | |
| TTCTCCAACAAAACCAGATA+TGG | - | chr1_3:59362526-59362545 | None:intergenic | 35.0% | |
| TTGGTCGATAGCTTCAAAAA+GGG | - | chr1_3:59362595-59362614 | None:intergenic | 35.0% | |
| TTTGGTCGATAGCTTCAAAA+AGG | - | chr1_3:59362596-59362615 | None:intergenic | 35.0% | |
| !! | AAACAGACTGGATTGGTAAT+CGG | - | chr1_3:59362653-59362672 | None:intergenic | 35.0% |
| ATCATGTAAACAGACTGGAT+TGG | - | chr1_3:59362660-59362679 | None:intergenic | 35.0% | |
| ATCCAGTCTGTTTACATGAT+TGG | + | chr1_3:59362660-59362679 | Msa0129440:CDS | 35.0% | |
| GTTTACATGATTGGAGGAAT+TGG | + | chr1_3:59362669-59362688 | Msa0129440:CDS | 35.0% | |
| ATTGTCTTTAATCACCCTGA+TGG | + | chr1_3:59362945-59362964 | Msa0129440:CDS | 35.0% | |
| !! | GGTTTGTTAACAAACTTGAC+AGG | + | chr1_3:59363036-59363055 | Msa0129440:CDS | 35.0% |
| TTGTAATATTGTGCTTGAGC+AGG | + | chr1_3:59363061-59363080 | Msa0129440:CDS | 35.0% | |
| TCACCATTCTCCAAGAATTT+GGG | - | chr1_3:59363089-59363108 | None:intergenic | 35.0% | |
| ATCACCATTCTCCAAGAATT+TGG | - | chr1_3:59363090-59363109 | None:intergenic | 35.0% | |
| AAATTCTTGGAGAATGGTGA+TGG | + | chr1_3:59363089-59363108 | Msa0129440:CDS | 35.0% | |
| AATTCTTGGAGAATGGTGAT+GGG | + | chr1_3:59363090-59363109 | Msa0129440:CDS | 35.0% | |
| GGAGTGAATGATGATAGTTA+TGG | - | chr1_3:59363337-59363356 | None:intergenic | 35.0% | |
| ! | TCAAGGATAGGTTGAAGAAA+AGG | + | chr1_3:59363417-59363436 | Msa0129440:CDS | 35.0% |
| ! | TCAGCATCGAAGAAAAAGAA+GGG | + | chr1_3:59363470-59363489 | Msa0129440:CDS | 35.0% |
| GGTCATTTGATCTACAAGCT+TGG | + | chr1_3:59361930-59361949 | Msa0129440:CDS | 40.0% | |
| CATTTGATCTACAAGCTTGG+CGG | + | chr1_3:59361933-59361952 | Msa0129440:CDS | 40.0% | |
| CAAGCTTGGCGGTATTAAAA+AGG | + | chr1_3:59361944-59361963 | Msa0129440:CDS | 40.0% | |
| AGCGTTCATTCAAGTATGCT+TGG | + | chr1_3:59362009-59362028 | Msa0129440:CDS | 40.0% | |
| GCGTTCATTCAAGTATGCTT+GGG | + | chr1_3:59362010-59362029 | Msa0129440:CDS | 40.0% | |
| ! | AATGAGAGTGCAGTGGTATT+TGG | - | chr1_3:59362108-59362127 | None:intergenic | 40.0% |
| TTGATGAAATCTCTGTGTCC+GGG | - | chr1_3:59362137-59362156 | None:intergenic | 40.0% | |
| CTTGATGAAATCTCTGTGTC+CGG | - | chr1_3:59362138-59362157 | None:intergenic | 40.0% | |
| !! | CTCATCATTGATTCCACAAC+TGG | + | chr1_3:59362197-59362216 | Msa0129440:CDS | 40.0% |
| AGTCTCAAAACTACCAGTTG+TGG | - | chr1_3:59362213-59362232 | None:intergenic | 40.0% | |
| !!! | ACAACTGGTAGTTTTGAGAC+TGG | + | chr1_3:59362212-59362231 | Msa0129440:CDS | 40.0% |
| ! | TTGATTCACACCAAGAGCAT+AGG | - | chr1_3:59362273-59362292 | None:intergenic | 40.0% |
| ! | AGAATTTCTCCCCCTTTTTG+AGG | + | chr1_3:59362463-59362482 | Msa0129440:CDS | 40.0% |
| TAGCCAACCTTCCTCAAAAA+GGG | - | chr1_3:59362477-59362496 | None:intergenic | 40.0% | |
| ATAGCCAACCTTCCTCAAAA+AGG | - | chr1_3:59362478-59362497 | None:intergenic | 40.0% | |
| !!! | GTTCCCATATCTGGTTTTGT+TGG | + | chr1_3:59362519-59362538 | Msa0129440:CDS | 40.0% |
| ACTAACCTTGACTGGTACAA+AGG | + | chr1_3:59362564-59362583 | Msa0129440:CDS | 40.0% | |
| TCGATAGCTTCAAAAAGGGT+GGG | - | chr1_3:59362591-59362610 | None:intergenic | 40.0% | |
| ACCAAATCAAAGAACCGAAG+AGG | + | chr1_3:59362610-59362629 | Msa0129440:CDS | 40.0% | |
| CTCCAATCATGTAAACAGAC+TGG | - | chr1_3:59362665-59362684 | None:intergenic | 40.0% | |
| CAGTCTGTTTACATGATTGG+AGG | + | chr1_3:59362663-59362682 | Msa0129440:CDS | 40.0% | |
| TTAAATCCCACAATGTCACC+AGG | - | chr1_3:59362825-59362844 | None:intergenic | 40.0% | |
| AATTTAATGGCTTCCATGGC+TGG | - | chr1_3:59362912-59362931 | None:intergenic | 40.0% | |
| ! | CAAGTGGAATTTTGCCATCA+GGG | - | chr1_3:59362962-59362981 | None:intergenic | 40.0% |
| ! | ATTCTTGGAGAATGGTGATG+GGG | + | chr1_3:59363091-59363110 | Msa0129440:CDS | 40.0% |
| ACTGTAAAACGAGCAAGTGA+AGG | - | chr1_3:59363170-59363189 | None:intergenic | 40.0% | |
| CTATCCTTGACAAATCCAAC+GGG | - | chr1_3:59363407-59363426 | None:intergenic | 40.0% | |
| CCTATCCTTGACAAATCCAA+CGG | - | chr1_3:59363408-59363427 | None:intergenic | 40.0% | |
| ! | GGATAGGTTGAAGAAAAGGA+AGG | + | chr1_3:59363421-59363440 | Msa0129440:CDS | 40.0% |
| ! | TAGGTTGAAGAAAAGGAAGG+AGG | + | chr1_3:59363424-59363443 | Msa0129440:CDS | 40.0% |
| ! | GTCAGCATCGAAGAAAAAGA+AGG | + | chr1_3:59363469-59363488 | Msa0129440:CDS | 40.0% |
| ! | CAGCATCGAAGAAAAAGAAG+GGG | + | chr1_3:59363471-59363490 | Msa0129440:CDS | 40.0% |
| GGTCATTTGATCTACAAGCT+TGG | + | chr1_3:59361930-59361949 | Msa0129440:CDS | 40.0% | |
| CATTTGATCTACAAGCTTGG+CGG | + | chr1_3:59361933-59361952 | Msa0129440:CDS | 40.0% | |
| CAAGCTTGGCGGTATTAAAA+AGG | + | chr1_3:59361944-59361963 | Msa0129440:CDS | 40.0% | |
| AGCGTTCATTCAAGTATGCT+TGG | + | chr1_3:59362009-59362028 | Msa0129440:CDS | 40.0% | |
| GCGTTCATTCAAGTATGCTT+GGG | + | chr1_3:59362010-59362029 | Msa0129440:CDS | 40.0% | |
| ! | AATGAGAGTGCAGTGGTATT+TGG | - | chr1_3:59362108-59362127 | None:intergenic | 40.0% |
| TTGATGAAATCTCTGTGTCC+GGG | - | chr1_3:59362137-59362156 | None:intergenic | 40.0% | |
| CTTGATGAAATCTCTGTGTC+CGG | - | chr1_3:59362138-59362157 | None:intergenic | 40.0% | |
| !! | CTCATCATTGATTCCACAAC+TGG | + | chr1_3:59362197-59362216 | Msa0129440:CDS | 40.0% |
| AGTCTCAAAACTACCAGTTG+TGG | - | chr1_3:59362213-59362232 | None:intergenic | 40.0% | |
| !!! | ACAACTGGTAGTTTTGAGAC+TGG | + | chr1_3:59362212-59362231 | Msa0129440:CDS | 40.0% |
| ! | TTGATTCACACCAAGAGCAT+AGG | - | chr1_3:59362273-59362292 | None:intergenic | 40.0% |
| ! | AGAATTTCTCCCCCTTTTTG+AGG | + | chr1_3:59362463-59362482 | Msa0129440:CDS | 40.0% |
| TAGCCAACCTTCCTCAAAAA+GGG | - | chr1_3:59362477-59362496 | None:intergenic | 40.0% | |
| ATAGCCAACCTTCCTCAAAA+AGG | - | chr1_3:59362478-59362497 | None:intergenic | 40.0% | |
| !!! | GTTCCCATATCTGGTTTTGT+TGG | + | chr1_3:59362519-59362538 | Msa0129440:CDS | 40.0% |
| ACTAACCTTGACTGGTACAA+AGG | + | chr1_3:59362564-59362583 | Msa0129440:CDS | 40.0% | |
| TCGATAGCTTCAAAAAGGGT+GGG | - | chr1_3:59362591-59362610 | None:intergenic | 40.0% | |
| ACCAAATCAAAGAACCGAAG+AGG | + | chr1_3:59362610-59362629 | Msa0129440:CDS | 40.0% | |
| CTCCAATCATGTAAACAGAC+TGG | - | chr1_3:59362665-59362684 | None:intergenic | 40.0% | |
| CAGTCTGTTTACATGATTGG+AGG | + | chr1_3:59362663-59362682 | Msa0129440:CDS | 40.0% | |
| TTAAATCCCACAATGTCACC+AGG | - | chr1_3:59362825-59362844 | None:intergenic | 40.0% | |
| AATTTAATGGCTTCCATGGC+TGG | - | chr1_3:59362912-59362931 | None:intergenic | 40.0% | |
| ! | CAAGTGGAATTTTGCCATCA+GGG | - | chr1_3:59362962-59362981 | None:intergenic | 40.0% |
| ! | ATTCTTGGAGAATGGTGATG+GGG | + | chr1_3:59363091-59363110 | Msa0129440:CDS | 40.0% |
| ACTGTAAAACGAGCAAGTGA+AGG | - | chr1_3:59363170-59363189 | None:intergenic | 40.0% | |
| CTATCCTTGACAAATCCAAC+GGG | - | chr1_3:59363407-59363426 | None:intergenic | 40.0% | |
| CCTATCCTTGACAAATCCAA+CGG | - | chr1_3:59363408-59363427 | None:intergenic | 40.0% | |
| ! | GGATAGGTTGAAGAAAAGGA+AGG | + | chr1_3:59363421-59363440 | Msa0129440:CDS | 40.0% |
| ! | TAGGTTGAAGAAAAGGAAGG+AGG | + | chr1_3:59363424-59363443 | Msa0129440:CDS | 40.0% |
| ! | GTCAGCATCGAAGAAAAAGA+AGG | + | chr1_3:59363469-59363488 | Msa0129440:CDS | 40.0% |
| ! | CAGCATCGAAGAAAAAGAAG+GGG | + | chr1_3:59363471-59363490 | Msa0129440:CDS | 40.0% |
| !! | TTTCTTGGTCATGTCGACTC+TGG | + | chr1_3:59361891-59361910 | Msa0129440:CDS | 45.0% |
| !! | TTCTTGGTCATGTCGACTCT+GGG | + | chr1_3:59361892-59361911 | Msa0129440:CDS | 45.0% |
| GTAGATCAAATGACCAGCAG+TGG | - | chr1_3:59361925-59361944 | None:intergenic | 45.0% | |
| TTGGGTACTTGACAAGCTCA+AGG | + | chr1_3:59362028-59362047 | Msa0129440:CDS | 45.0% | |
| GGTTGTCTCAAACTTGGACA+TGG | - | chr1_3:59362087-59362106 | None:intergenic | 45.0% | |
| TGATGAAATCTCTGTGTCCG+GGG | - | chr1_3:59362136-59362155 | None:intergenic | 45.0% | |
| !!! | TGGTAGTTTTGAGACTGGTG+TGG | + | chr1_3:59362217-59362236 | Msa0129440:CDS | 45.0% |
| !!! | TAGTTTTGAGACTGGTGTGG+AGG | + | chr1_3:59362220-59362239 | Msa0129440:CDS | 45.0% |
| !!! | AGTTTTGAGACTGGTGTGGA+GGG | + | chr1_3:59362221-59362240 | Msa0129440:CDS | 45.0% |
| AATGATCTGCTGCTGCAACA+AGG | + | chr1_3:59362292-59362311 | Msa0129440:CDS | 45.0% | |
| ! | CACCCAAATACTCTAAGGGT+AGG | + | chr1_3:59362424-59362443 | Msa0129440:CDS | 45.0% |
| !! | TTTCTCCCCCTTTTTGAGGA+AGG | + | chr1_3:59362467-59362486 | Msa0129440:CDS | 45.0% |
| AGCCAACCTTCCTCAAAAAG+GGG | - | chr1_3:59362476-59362495 | None:intergenic | 45.0% | |
| GTCGATAGCTTCAAAAAGGG+TGG | - | chr1_3:59362592-59362611 | None:intergenic | 45.0% | |
| GCCTCTTCGGTTCTTTGATT+TGG | - | chr1_3:59362614-59362633 | None:intergenic | 45.0% | |
| AATCGGAGAGGCTTATCTGA+TGG | - | chr1_3:59362636-59362655 | None:intergenic | 45.0% | |
| ATGACTGGTGTCTTGAAACC+AGG | + | chr1_3:59362714-59362733 | Msa0129440:CDS | 45.0% | |
| TGGTGTCTTGAAACCAGGAA+TGG | + | chr1_3:59362719-59362738 | Msa0129440:CDS | 45.0% | |
| TGTCTTGAAACCAGGAATGG+CGG | + | chr1_3:59362722-59362741 | Msa0129440:CDS | 45.0% | |
| TCTGTTAAGGATCTCAAGCG+AGG | + | chr1_3:59362858-59362877 | Msa0129440:CDS | 45.0% | |
| TGGATCATCGTTGGAGTTTG+AGG | - | chr1_3:59362892-59362911 | None:intergenic | 45.0% | |
| ! | CCAAGTGGAATTTTGCCATC+AGG | - | chr1_3:59362963-59362982 | None:intergenic | 45.0% |
| CCTGATGGCAAAATTCCACT+TGG | + | chr1_3:59362960-59362979 | Msa0129440:CDS | 45.0% | |
| ACAACAGGTGTATAGCCAAG+TGG | - | chr1_3:59362978-59362997 | None:intergenic | 45.0% | |
| ATCGAACCTGACAGGAATGT+GGG | - | chr1_3:59363015-59363034 | None:intergenic | 45.0% | |
| TATCGAACCTGACAGGAATG+TGG | - | chr1_3:59363016-59363035 | None:intergenic | 45.0% | |
| ACATTCCTGTCAGGTTCGAT+AGG | + | chr1_3:59363015-59363034 | Msa0129440:CDS | 45.0% | |
| ACAAACCTATCGAACCTGAC+AGG | - | chr1_3:59363023-59363042 | None:intergenic | 45.0% | |
| GAGCCCAAATTCTTGGAGAA+TGG | + | chr1_3:59363083-59363102 | Msa0129440:CDS | 45.0% | |
| AATGATTCCAACCAAGCCCA+TGG | + | chr1_3:59363121-59363140 | Msa0129440:CDS | 45.0% | |
| GAATAAGGCTCTACCACCAT+GGG | - | chr1_3:59363140-59363159 | None:intergenic | 45.0% | |
| TGAATAAGGCTCTACCACCA+TGG | - | chr1_3:59363141-59363160 | None:intergenic | 45.0% | |
| TGTCGCTGTTGGAATCATCA+AGG | + | chr1_3:59363208-59363227 | Msa0129440:CDS | 45.0% | |
| GAAGAAAGCGAAGACGTATC+AGG | + | chr1_3:59363238-59363257 | Msa0129440:CDS | 45.0% | |
| ACCCTGAAGAATGGTGATTC+TGG | + | chr1_3:59363266-59363285 | Msa0129440:CDS | 45.0% | |
| CCCAGAATCACCATTCTTCA+GGG | - | chr1_3:59363270-59363289 | None:intergenic | 45.0% | |
| CCCTGAAGAATGGTGATTCT+GGG | + | chr1_3:59363267-59363286 | Msa0129440:CDS | 45.0% | |
| CCTGAAGAATGGTGATTCTG+GGG | + | chr1_3:59363268-59363287 | Msa0129440:CDS | 45.0% | |
| TGCCTCTGACAGTAAAACGT+GGG | - | chr1_3:59363358-59363377 | None:intergenic | 45.0% | |
| ATGCCTCTGACAGTAAAACG+TGG | - | chr1_3:59363359-59363378 | None:intergenic | 45.0% | |
| CCGTTGGATTTGTCAAGGAT+AGG | + | chr1_3:59363405-59363424 | Msa0129440:CDS | 45.0% | |
| GAAGAAAAGGAAGGAGGATC+AGG | + | chr1_3:59363430-59363449 | Msa0129440:CDS | 45.0% | |
| !! | TTTCTTGGTCATGTCGACTC+TGG | + | chr1_3:59361891-59361910 | Msa0129440:CDS | 45.0% |
| !! | TTCTTGGTCATGTCGACTCT+GGG | + | chr1_3:59361892-59361911 | Msa0129440:CDS | 45.0% |
| GTAGATCAAATGACCAGCAG+TGG | - | chr1_3:59361925-59361944 | None:intergenic | 45.0% | |
| TTGGGTACTTGACAAGCTCA+AGG | + | chr1_3:59362028-59362047 | Msa0129440:CDS | 45.0% | |
| GGTTGTCTCAAACTTGGACA+TGG | - | chr1_3:59362087-59362106 | None:intergenic | 45.0% | |
| TGATGAAATCTCTGTGTCCG+GGG | - | chr1_3:59362136-59362155 | None:intergenic | 45.0% | |
| !!! | TGGTAGTTTTGAGACTGGTG+TGG | + | chr1_3:59362217-59362236 | Msa0129440:CDS | 45.0% |
| !!! | TAGTTTTGAGACTGGTGTGG+AGG | + | chr1_3:59362220-59362239 | Msa0129440:CDS | 45.0% |
| !!! | AGTTTTGAGACTGGTGTGGA+GGG | + | chr1_3:59362221-59362240 | Msa0129440:CDS | 45.0% |
| AATGATCTGCTGCTGCAACA+AGG | + | chr1_3:59362292-59362311 | Msa0129440:CDS | 45.0% | |
| ! | CACCCAAATACTCTAAGGGT+AGG | + | chr1_3:59362424-59362443 | Msa0129440:CDS | 45.0% |
| !! | TTTCTCCCCCTTTTTGAGGA+AGG | + | chr1_3:59362467-59362486 | Msa0129440:CDS | 45.0% |
| AGCCAACCTTCCTCAAAAAG+GGG | - | chr1_3:59362476-59362495 | None:intergenic | 45.0% | |
| GTCGATAGCTTCAAAAAGGG+TGG | - | chr1_3:59362592-59362611 | None:intergenic | 45.0% | |
| GCCTCTTCGGTTCTTTGATT+TGG | - | chr1_3:59362614-59362633 | None:intergenic | 45.0% | |
| AATCGGAGAGGCTTATCTGA+TGG | - | chr1_3:59362636-59362655 | None:intergenic | 45.0% | |
| ATGACTGGTGTCTTGAAACC+AGG | + | chr1_3:59362714-59362733 | Msa0129440:CDS | 45.0% | |
| TGGTGTCTTGAAACCAGGAA+TGG | + | chr1_3:59362719-59362738 | Msa0129440:CDS | 45.0% | |
| TGTCTTGAAACCAGGAATGG+CGG | + | chr1_3:59362722-59362741 | Msa0129440:CDS | 45.0% | |
| TCTGTTAAGGATCTCAAGCG+AGG | + | chr1_3:59362858-59362877 | Msa0129440:CDS | 45.0% | |
| TGGATCATCGTTGGAGTTTG+AGG | - | chr1_3:59362892-59362911 | None:intergenic | 45.0% | |
| ! | CCAAGTGGAATTTTGCCATC+AGG | - | chr1_3:59362963-59362982 | None:intergenic | 45.0% |
| CCTGATGGCAAAATTCCACT+TGG | + | chr1_3:59362960-59362979 | Msa0129440:CDS | 45.0% | |
| ACAACAGGTGTATAGCCAAG+TGG | - | chr1_3:59362978-59362997 | None:intergenic | 45.0% | |
| ATCGAACCTGACAGGAATGT+GGG | - | chr1_3:59363015-59363034 | None:intergenic | 45.0% | |
| TATCGAACCTGACAGGAATG+TGG | - | chr1_3:59363016-59363035 | None:intergenic | 45.0% | |
| ACATTCCTGTCAGGTTCGAT+AGG | + | chr1_3:59363015-59363034 | Msa0129440:CDS | 45.0% | |
| ACAAACCTATCGAACCTGAC+AGG | - | chr1_3:59363023-59363042 | None:intergenic | 45.0% | |
| GAGCCCAAATTCTTGGAGAA+TGG | + | chr1_3:59363083-59363102 | Msa0129440:CDS | 45.0% | |
| AATGATTCCAACCAAGCCCA+TGG | + | chr1_3:59363121-59363140 | Msa0129440:CDS | 45.0% | |
| GAATAAGGCTCTACCACCAT+GGG | - | chr1_3:59363140-59363159 | None:intergenic | 45.0% | |
| TGAATAAGGCTCTACCACCA+TGG | - | chr1_3:59363141-59363160 | None:intergenic | 45.0% | |
| TGTCGCTGTTGGAATCATCA+AGG | + | chr1_3:59363208-59363227 | Msa0129440:CDS | 45.0% | |
| GAAGAAAGCGAAGACGTATC+AGG | + | chr1_3:59363238-59363257 | Msa0129440:CDS | 45.0% | |
| ACCCTGAAGAATGGTGATTC+TGG | + | chr1_3:59363266-59363285 | Msa0129440:CDS | 45.0% | |
| CCCAGAATCACCATTCTTCA+GGG | - | chr1_3:59363270-59363289 | None:intergenic | 45.0% | |
| CCCTGAAGAATGGTGATTCT+GGG | + | chr1_3:59363267-59363286 | Msa0129440:CDS | 45.0% | |
| CCTGAAGAATGGTGATTCTG+GGG | + | chr1_3:59363268-59363287 | Msa0129440:CDS | 45.0% | |
| TGCCTCTGACAGTAAAACGT+GGG | - | chr1_3:59363358-59363377 | None:intergenic | 45.0% | |
| ATGCCTCTGACAGTAAAACG+TGG | - | chr1_3:59363359-59363378 | None:intergenic | 45.0% | |
| CCGTTGGATTTGTCAAGGAT+AGG | + | chr1_3:59363405-59363424 | Msa0129440:CDS | 45.0% | |
| GAAGAAAAGGAAGGAGGATC+AGG | + | chr1_3:59363430-59363449 | Msa0129440:CDS | 45.0% | |
| GATGAAATCTCTGTGTCCGG+GGG | - | chr1_3:59362135-59362154 | None:intergenic | 50.0% | |
| GAGAACAGCACAGTCAGCTA+GGG | - | chr1_3:59362180-59362199 | None:intergenic | 50.0% | |
| TGAGAACAGCACAGTCAGCT+AGG | - | chr1_3:59362181-59362200 | None:intergenic | 50.0% | |
| ! | GGCAAGAAGAGCATGTTCAC+CGG | - | chr1_3:59362252-59362271 | None:intergenic | 50.0% |
| GCTCTTCTTGCCTATGCTCT+TGG | + | chr1_3:59362260-59362279 | Msa0129440:CDS | 50.0% | |
| !! | TCCCCCTTTTTGAGGAAGGT+TGG | + | chr1_3:59362471-59362490 | Msa0129440:CDS | 50.0% |
| GCCAACCTTCCTCAAAAAGG+GGG | - | chr1_3:59362475-59362494 | None:intergenic | 50.0% | |
| AGCGCTCTACTAACCTTGAC+TGG | + | chr1_3:59362556-59362575 | Msa0129440:CDS | 50.0% | |
| TGGGACCTTTGTACCAGTCA+AGG | - | chr1_3:59362572-59362591 | None:intergenic | 50.0% | |
| GGCTTATCTGATGGCCTCTT+CGG | - | chr1_3:59362627-59362646 | None:intergenic | 50.0% | |
| !! | GACTGGATTGGTAATCGGAG+AGG | - | chr1_3:59362648-59362667 | None:intergenic | 50.0% |
| GGAATTGGAGTCGTTCCTGT+TGG | + | chr1_3:59362684-59362703 | Msa0129440:CDS | 50.0% | |
| CCAGTCATAACACGACCAAC+AGG | - | chr1_3:59362702-59362721 | None:intergenic | 50.0% | |
| CCTGTTGGTCGTGTTATGAC+TGG | + | chr1_3:59362699-59362718 | Msa0129440:CDS | 50.0% | |
| TTCAGTTTGCACCCCAGTTG+GGG | - | chr1_3:59362757-59362776 | None:intergenic | 50.0% | |
| CTTCAGTTTGCACCCCAGTT+GGG | - | chr1_3:59362758-59362777 | None:intergenic | 50.0% | |
| ACTTCAGTTTGCACCCCAGT+TGG | - | chr1_3:59362759-59362778 | None:intergenic | 50.0% | |
| AACTGGGGTGCAAACTGAAG+TGG | + | chr1_3:59362758-59362777 | Msa0129440:CDS | 50.0% | |
| ACTGGGGTGCAAACTGAAGT+GGG | + | chr1_3:59362759-59362778 | Msa0129440:CDS | 50.0% | |
| TCCCACAATGTCACCAGGAA+GGG | - | chr1_3:59362820-59362839 | None:intergenic | 50.0% | |
| ATCCCACAATGTCACCAGGA+AGG | - | chr1_3:59362821-59362840 | None:intergenic | 50.0% | |
| TTCCATGGCTGGATCATCGT+TGG | - | chr1_3:59362901-59362920 | None:intergenic | 50.0% | |
| TGAGCAGGAGCCCAAATTCT+TGG | + | chr1_3:59363076-59363095 | Msa0129440:CDS | 50.0% | |
| CAGGATGTGACCCTGAAGAA+TGG | + | chr1_3:59363257-59363276 | Msa0129440:CDS | 50.0% | |
| CCCCAGAATCACCATTCTTC+AGG | - | chr1_3:59363271-59363290 | None:intergenic | 50.0% | |
| ! | CTCCCACGTTTTACTGTCAG+AGG | + | chr1_3:59363353-59363372 | Msa0129440:CDS | 50.0% |
| AATCCAACGGGCACAGTTTG+AGG | - | chr1_3:59363395-59363414 | None:intergenic | 50.0% | |
| TGTGCCCGTTGGATTTGTCA+AGG | + | chr1_3:59363400-59363419 | Msa0129440:CDS | 50.0% | |
| GATGAAATCTCTGTGTCCGG+GGG | - | chr1_3:59362135-59362154 | None:intergenic | 50.0% | |
| GAGAACAGCACAGTCAGCTA+GGG | - | chr1_3:59362180-59362199 | None:intergenic | 50.0% | |
| TGAGAACAGCACAGTCAGCT+AGG | - | chr1_3:59362181-59362200 | None:intergenic | 50.0% | |
| ! | GGCAAGAAGAGCATGTTCAC+CGG | - | chr1_3:59362252-59362271 | None:intergenic | 50.0% |
| GCTCTTCTTGCCTATGCTCT+TGG | + | chr1_3:59362260-59362279 | Msa0129440:CDS | 50.0% | |
| !! | TCCCCCTTTTTGAGGAAGGT+TGG | + | chr1_3:59362471-59362490 | Msa0129440:CDS | 50.0% |
| GCCAACCTTCCTCAAAAAGG+GGG | - | chr1_3:59362475-59362494 | None:intergenic | 50.0% | |
| AGCGCTCTACTAACCTTGAC+TGG | + | chr1_3:59362556-59362575 | Msa0129440:CDS | 50.0% | |
| TGGGACCTTTGTACCAGTCA+AGG | - | chr1_3:59362572-59362591 | None:intergenic | 50.0% | |
| GGCTTATCTGATGGCCTCTT+CGG | - | chr1_3:59362627-59362646 | None:intergenic | 50.0% | |
| !! | GACTGGATTGGTAATCGGAG+AGG | - | chr1_3:59362648-59362667 | None:intergenic | 50.0% |
| GGAATTGGAGTCGTTCCTGT+TGG | + | chr1_3:59362684-59362703 | Msa0129440:CDS | 50.0% | |
| CCAGTCATAACACGACCAAC+AGG | - | chr1_3:59362702-59362721 | None:intergenic | 50.0% | |
| CCTGTTGGTCGTGTTATGAC+TGG | + | chr1_3:59362699-59362718 | Msa0129440:CDS | 50.0% | |
| TTCAGTTTGCACCCCAGTTG+GGG | - | chr1_3:59362757-59362776 | None:intergenic | 50.0% | |
| CTTCAGTTTGCACCCCAGTT+GGG | - | chr1_3:59362758-59362777 | None:intergenic | 50.0% | |
| ACTTCAGTTTGCACCCCAGT+TGG | - | chr1_3:59362759-59362778 | None:intergenic | 50.0% | |
| AACTGGGGTGCAAACTGAAG+TGG | + | chr1_3:59362758-59362777 | Msa0129440:CDS | 50.0% | |
| ACTGGGGTGCAAACTGAAGT+GGG | + | chr1_3:59362759-59362778 | Msa0129440:CDS | 50.0% | |
| TCCCACAATGTCACCAGGAA+GGG | - | chr1_3:59362820-59362839 | None:intergenic | 50.0% | |
| ATCCCACAATGTCACCAGGA+AGG | - | chr1_3:59362821-59362840 | None:intergenic | 50.0% | |
| TTCCATGGCTGGATCATCGT+TGG | - | chr1_3:59362901-59362920 | None:intergenic | 50.0% | |
| TGAGCAGGAGCCCAAATTCT+TGG | + | chr1_3:59363076-59363095 | Msa0129440:CDS | 50.0% | |
| CAGGATGTGACCCTGAAGAA+TGG | + | chr1_3:59363257-59363276 | Msa0129440:CDS | 50.0% | |
| CCCCAGAATCACCATTCTTC+AGG | - | chr1_3:59363271-59363290 | None:intergenic | 50.0% | |
| ! | CTCCCACGTTTTACTGTCAG+AGG | + | chr1_3:59363353-59363372 | Msa0129440:CDS | 50.0% |
| AATCCAACGGGCACAGTTTG+AGG | - | chr1_3:59363395-59363414 | None:intergenic | 50.0% | |
| TGTGCCCGTTGGATTTGTCA+AGG | + | chr1_3:59363400-59363419 | Msa0129440:CDS | 50.0% | |
| TCTGGGAAGTCAACCACTGC+TGG | + | chr1_3:59361909-59361928 | Msa0129440:CDS | 55.0% | |
| CTCAAGGCTGAGCGTGAAAG+AGG | + | chr1_3:59362044-59362063 | Msa0129440:CDS | 55.0% | |
| GCAAAAGTCACCGCCATTCC+TGG | - | chr1_3:59362735-59362754 | None:intergenic | 55.0% | |
| ! | CGGTGACTTTTGCCCCAACT+GGG | + | chr1_3:59362742-59362761 | Msa0129440:CDS | 55.0% |
| ! | GGTGACTTTTGCCCCAACTG+GGG | + | chr1_3:59362743-59362762 | Msa0129440:CDS | 55.0% |
| CTGGGGTGCAAACTGAAGTG+GGG | + | chr1_3:59362760-59362779 | Msa0129440:CDS | 55.0% | |
| GCAAACTGAAGTGGGGTCTG+TGG | + | chr1_3:59362767-59362786 | Msa0129440:CDS | 55.0% | |
| TCTGTGGAGATGCACCACGA+AGG | + | chr1_3:59362783-59362802 | Msa0129440:CDS | 55.0% | |
| GCCCTTCCTGGTGACATTGT+GGG | + | chr1_3:59362816-59362835 | Msa0129440:CDS | 55.0% | |
| CTCCAACGATGATCCAGCCA+TGG | + | chr1_3:59362896-59362915 | Msa0129440:CDS | 55.0% | |
| GAGGTGTGGCAGTCAACAAC+AGG | - | chr1_3:59362993-59363012 | None:intergenic | 55.0% | |
| TGACAGGAATGTGGGAGGTG+TGG | - | chr1_3:59363007-59363026 | None:intergenic | 55.0% | |
| ACACCTCCCACATTCCTGTC+AGG | + | chr1_3:59363006-59363025 | Msa0129440:CDS | 55.0% | |
| GAACCTGACAGGAATGTGGG+AGG | - | chr1_3:59363012-59363031 | None:intergenic | 55.0% | |
| GATTCCAACCAAGCCCATGG+TGG | + | chr1_3:59363124-59363143 | Msa0129440:CDS | 55.0% | |
| ! | TCTACCACCATGGGCTTGGT+TGG | - | chr1_3:59363131-59363150 | None:intergenic | 55.0% |
| ACGCGTCAAACTGTCGCTGT+TGG | + | chr1_3:59363197-59363216 | Msa0129440:CDS | 55.0% | |
| ! | TCTACCACGATGGGCTTGGT+GGG | - | chr1_3:59363308-59363327 | None:intergenic | 55.0% |
| ! | TTCTACCACGATGGGCTTGG+TGG | - | chr1_3:59363309-59363328 | None:intergenic | 55.0% |
| ! | AGCTTCTACCACGATGGGCT+TGG | - | chr1_3:59363312-59363331 | None:intergenic | 55.0% |
| TGGCGAGCTTCTACCACGAT+GGG | - | chr1_3:59363317-59363336 | None:intergenic | 55.0% | |
| ATGGCGAGCTTCTACCACGA+TGG | - | chr1_3:59363318-59363337 | None:intergenic | 55.0% | |
| ! | GGCACAGTTTGAGGCACAGT+TGG | - | chr1_3:59363386-59363405 | None:intergenic | 55.0% |
| AGGAAGGAGGATCAGGATGC+AGG | + | chr1_3:59363437-59363456 | Msa0129440:CDS | 55.0% | |
| AAGGAGGATCAGGATGCAGG+AGG | + | chr1_3:59363440-59363459 | Msa0129440:CDS | 55.0% | |
| TCTGGGAAGTCAACCACTGC+TGG | + | chr1_3:59361909-59361928 | Msa0129440:CDS | 55.0% | |
| CTCAAGGCTGAGCGTGAAAG+AGG | + | chr1_3:59362044-59362063 | Msa0129440:CDS | 55.0% | |
| GCAAAAGTCACCGCCATTCC+TGG | - | chr1_3:59362735-59362754 | None:intergenic | 55.0% | |
| ! | CGGTGACTTTTGCCCCAACT+GGG | + | chr1_3:59362742-59362761 | Msa0129440:CDS | 55.0% |
| ! | GGTGACTTTTGCCCCAACTG+GGG | + | chr1_3:59362743-59362762 | Msa0129440:CDS | 55.0% |
| CTGGGGTGCAAACTGAAGTG+GGG | + | chr1_3:59362760-59362779 | Msa0129440:CDS | 55.0% | |
| GCAAACTGAAGTGGGGTCTG+TGG | + | chr1_3:59362767-59362786 | Msa0129440:CDS | 55.0% | |
| TCTGTGGAGATGCACCACGA+AGG | + | chr1_3:59362783-59362802 | Msa0129440:CDS | 55.0% | |
| GCCCTTCCTGGTGACATTGT+GGG | + | chr1_3:59362816-59362835 | Msa0129440:CDS | 55.0% | |
| CTCCAACGATGATCCAGCCA+TGG | + | chr1_3:59362896-59362915 | Msa0129440:CDS | 55.0% | |
| GAGGTGTGGCAGTCAACAAC+AGG | - | chr1_3:59362993-59363012 | None:intergenic | 55.0% | |
| TGACAGGAATGTGGGAGGTG+TGG | - | chr1_3:59363007-59363026 | None:intergenic | 55.0% | |
| ACACCTCCCACATTCCTGTC+AGG | + | chr1_3:59363006-59363025 | Msa0129440:CDS | 55.0% | |
| GAACCTGACAGGAATGTGGG+AGG | - | chr1_3:59363012-59363031 | None:intergenic | 55.0% | |
| GATTCCAACCAAGCCCATGG+TGG | + | chr1_3:59363124-59363143 | Msa0129440:CDS | 55.0% | |
| ! | TCTACCACCATGGGCTTGGT+TGG | - | chr1_3:59363131-59363150 | None:intergenic | 55.0% |
| ACGCGTCAAACTGTCGCTGT+TGG | + | chr1_3:59363197-59363216 | Msa0129440:CDS | 55.0% | |
| ! | TCTACCACGATGGGCTTGGT+GGG | - | chr1_3:59363308-59363327 | None:intergenic | 55.0% |
| ! | TTCTACCACGATGGGCTTGG+TGG | - | chr1_3:59363309-59363328 | None:intergenic | 55.0% |
| ! | AGCTTCTACCACGATGGGCT+TGG | - | chr1_3:59363312-59363331 | None:intergenic | 55.0% |
| TGGCGAGCTTCTACCACGAT+GGG | - | chr1_3:59363317-59363336 | None:intergenic | 55.0% | |
| ATGGCGAGCTTCTACCACGA+TGG | - | chr1_3:59363318-59363337 | None:intergenic | 55.0% | |
| ! | GGCACAGTTTGAGGCACAGT+TGG | - | chr1_3:59363386-59363405 | None:intergenic | 55.0% |
| AGGAAGGAGGATCAGGATGC+AGG | + | chr1_3:59363437-59363456 | Msa0129440:CDS | 55.0% | |
| AAGGAGGATCAGGATGCAGG+AGG | + | chr1_3:59363440-59363459 | Msa0129440:CDS | 55.0% | |
| ! | GGGCGTCAATGAGAGTGCAG+TGG | - | chr1_3:59362115-59362134 | None:intergenic | 60.0% |
| TGCACTCTCATTGACGCCCC+CGG | + | chr1_3:59362116-59362135 | Msa0129440:CDS | 60.0% | |
| ACAGTCAGCTAGGGACGTGC+CGG | - | chr1_3:59362171-59362190 | None:intergenic | 60.0% | |
| ACTGGTGTGGAGGGTCAGAC+CGG | + | chr1_3:59362230-59362249 | Msa0129440:CDS | 60.0% | |
| ! | GCGGTGACTTTTGCCCCAAC+TGG | + | chr1_3:59362741-59362760 | Msa0129440:CDS | 60.0% |
| GCACCACGAAGGTCTCATCG+AGG | + | chr1_3:59362794-59362813 | Msa0129440:CDS | 60.0% | |
| GGCCCTTCCTGGTGACATTG+TGG | + | chr1_3:59362815-59362834 | Msa0129440:CDS | 60.0% | |
| AGGCTCTACCACCATGGGCT+TGG | - | chr1_3:59363135-59363154 | None:intergenic | 60.0% | |
| GATTCCCACCAAGCCCATCG+TGG | + | chr1_3:59363301-59363320 | Msa0129440:CDS | 60.0% | |
| GTGCCTCAAACTGTGCCCGT+TGG | + | chr1_3:59363389-59363408 | Msa0129440:CDS | 60.0% | |
| ! | GGGCGTCAATGAGAGTGCAG+TGG | - | chr1_3:59362115-59362134 | None:intergenic | 60.0% |
| TGCACTCTCATTGACGCCCC+CGG | + | chr1_3:59362116-59362135 | Msa0129440:CDS | 60.0% | |
| ACAGTCAGCTAGGGACGTGC+CGG | - | chr1_3:59362171-59362190 | None:intergenic | 60.0% | |
| ACTGGTGTGGAGGGTCAGAC+CGG | + | chr1_3:59362230-59362249 | Msa0129440:CDS | 60.0% | |
| ! | GCGGTGACTTTTGCCCCAAC+TGG | + | chr1_3:59362741-59362760 | Msa0129440:CDS | 60.0% |
| GCACCACGAAGGTCTCATCG+AGG | + | chr1_3:59362794-59362813 | Msa0129440:CDS | 60.0% | |
| GGCCCTTCCTGGTGACATTG+TGG | + | chr1_3:59362815-59362834 | Msa0129440:CDS | 60.0% | |
| AGGCTCTACCACCATGGGCT+TGG | - | chr1_3:59363135-59363154 | None:intergenic | 60.0% | |
| GATTCCCACCAAGCCCATCG+TGG | + | chr1_3:59363301-59363320 | Msa0129440:CDS | 60.0% | |
| GTGCCTCAAACTGTGCCCGT+TGG | + | chr1_3:59363389-59363408 | Msa0129440:CDS | 60.0% | |
| GGGCCTCGATGAGACCTTCG+TGG | - | chr1_3:59362800-59362819 | None:intergenic | 65.0% | |
| GGTCTCATCGAGGCCCTTCC+TGG | + | chr1_3:59362804-59362823 | Msa0129440:CDS | 65.0% | |
| GGGCCTCGATGAGACCTTCG+TGG | - | chr1_3:59362800-59362819 | None:intergenic | 65.0% | |
| GGTCTCATCGAGGCCCTTCC+TGG | + | chr1_3:59362804-59362823 | Msa0129440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59361855 | 59363529 | 59361855 | ID=Msa0129440;Name=Msa0129440 |
| chr1_3 | mRNA | 59361855 | 59363529 | 59361855 | ID=Msa0129440-mRNA-1;Parent=Msa0129440;Name=Msa0129440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|1|2|0|525 |
| chr1_3 | exon | 59361855 | 59362313 | 59361855 | ID=Msa0129440-mRNA-1:exon:19304;Parent=Msa0129440-mRNA-1 |
| chr1_3 | exon | 59362411 | 59363529 | 59362411 | ID=Msa0129440-mRNA-1:exon:19305;Parent=Msa0129440-mRNA-1 |
| chr1_3 | CDS | 59361855 | 59362313 | 59361855 | ID=Msa0129440-mRNA-1:cds;Parent=Msa0129440-mRNA-1 |
| chr1_3 | CDS | 59362411 | 59363529 | 59362411 | ID=Msa0129440-mRNA-1:cds;Parent=Msa0129440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
