Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719700 | KEH16502.1 | 86.449 | 214 | 23 | 2 | 1 | 214 | 1 | 208 | 3.67e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719700 | sp|Q500U8|TKPR1_ARATH | 68.919 | 148 | 45 | 1 | 4 | 151 | 7 | 153 | 2.12e-65 | 207 |
| Msa0719700 | sp|Q500U8|TKPR1_ARATH | 55.556 | 54 | 24 | 0 | 144 | 197 | 224 | 277 | 8.35e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719700 | A0A072TGL0 | 86.449 | 214 | 23 | 2 | 1 | 214 | 1 | 208 | 1.75e-127 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719700 | Msa1023450 | 0.880641 | 4.644504e-70 | -8.615850e-47 |
| Msa0719700 | Msa1062600 | 0.903105 | 4.891882e-79 | -8.615850e-47 |
| Msa0719700 | Msa1102700 | 0.885506 | 7.668849e-72 | -8.615850e-47 |
| Msa0129440 | Msa0719700 | 0.814123 | 1.808738e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719700 | MtrunA17_Chr2g0331211 | 87.417 | 151 | 19 | 0 | 1 | 151 | 1 | 151 | 4.03e-89 | 265 |
| Msa0719700 | MtrunA17_Chr2g0331211 | 86.792 | 53 | 7 | 0 | 145 | 197 | 223 | 275 | 7.70e-26 | 102 |
| Msa0719700 | MtrunA17_Chr8g0364051 | 52.703 | 148 | 68 | 2 | 5 | 151 | 8 | 154 | 2.54e-44 | 150 |
| Msa0719700 | MtrunA17_Chr4g0039311 | 49.068 | 161 | 73 | 3 | 5 | 164 | 11 | 163 | 3.01e-44 | 150 |
| Msa0719700 | MtrunA17_Chr3g0077231 | 50.676 | 148 | 71 | 2 | 5 | 151 | 6 | 152 | 1.25e-43 | 148 |
| Msa0719700 | MtrunA17_Chr8g0363831 | 52.027 | 148 | 69 | 2 | 5 | 151 | 9 | 155 | 2.28e-43 | 148 |
| Msa0719700 | MtrunA17_Chr3g0077221 | 49.677 | 155 | 76 | 2 | 5 | 158 | 10 | 163 | 2.55e-42 | 145 |
| Msa0719700 | MtrunA17_Chr4g0039321 | 50.000 | 148 | 72 | 2 | 5 | 151 | 9 | 155 | 6.94e-42 | 144 |
| Msa0719700 | MtrunA17_Chr4g0002661 | 48.366 | 153 | 69 | 4 | 4 | 156 | 12 | 154 | 8.51e-37 | 130 |
| Msa0719700 | MtrunA17_Chr1g0155411 | 44.898 | 147 | 78 | 2 | 5 | 151 | 8 | 151 | 6.89e-34 | 123 |
| Msa0719700 | MtrunA17_Chr1g0155431 | 45.522 | 134 | 72 | 1 | 5 | 138 | 8 | 140 | 7.35e-33 | 120 |
| Msa0719700 | MtrunA17_Chr4g0002961 | 46.405 | 153 | 72 | 4 | 4 | 156 | 12 | 154 | 1.87e-32 | 119 |
| Msa0719700 | MtrunA17_Chr5g0423551 | 46.479 | 142 | 73 | 2 | 4 | 144 | 3 | 142 | 5.65e-31 | 115 |
| Msa0719700 | MtrunA17_Chr4g0048961 | 44.961 | 129 | 69 | 2 | 4 | 132 | 13 | 139 | 1.52e-27 | 106 |
| Msa0719700 | MtrunA17_Chr3g0106111 | 43.846 | 130 | 72 | 1 | 1 | 130 | 1 | 129 | 5.45e-27 | 105 |
| Msa0719700 | MtrunA17_Chr2g0333781 | 40.678 | 177 | 87 | 6 | 5 | 178 | 20 | 181 | 1.69e-26 | 103 |
| Msa0719700 | MtrunA17_Chr5g0431311 | 43.165 | 139 | 74 | 2 | 5 | 143 | 5 | 138 | 2.23e-26 | 103 |
| Msa0719700 | MtrunA17_Chr4g0042101 | 38.854 | 157 | 86 | 3 | 4 | 153 | 23 | 176 | 2.35e-26 | 103 |
| Msa0719700 | MtrunA17_Chr7g0245741 | 42.188 | 128 | 72 | 2 | 4 | 130 | 7 | 133 | 5.66e-26 | 102 |
| Msa0719700 | MtrunA17_Chr7g0245671 | 40.458 | 131 | 76 | 2 | 4 | 133 | 7 | 136 | 2.59e-25 | 100 |
| Msa0719700 | MtrunA17_Chr4g0001321 | 47.482 | 139 | 62 | 4 | 5 | 143 | 17 | 144 | 4.37e-25 | 100 |
| Msa0719700 | MtrunA17_Chr7g0245731 | 40.845 | 142 | 80 | 4 | 4 | 144 | 57 | 195 | 1.97e-24 | 99.0 |
| Msa0719700 | MtrunA17_Chr7g0245641 | 38.636 | 132 | 78 | 2 | 4 | 133 | 44 | 174 | 2.10e-24 | 99.0 |
| Msa0719700 | MtrunA17_Chr7g0245631 | 41.860 | 129 | 73 | 2 | 4 | 131 | 7 | 134 | 2.88e-24 | 97.8 |
| Msa0719700 | MtrunA17_Chr7g0245691 | 38.636 | 132 | 78 | 2 | 4 | 133 | 7 | 137 | 5.95e-24 | 97.1 |
| Msa0719700 | MtrunA17_Chr4g0010991 | 38.281 | 128 | 76 | 2 | 5 | 130 | 8 | 134 | 1.85e-23 | 95.9 |
| Msa0719700 | MtrunA17_Chr2g0291541 | 37.838 | 148 | 90 | 2 | 5 | 151 | 10 | 156 | 2.00e-22 | 92.8 |
| Msa0719700 | MtrunA17_Chr7g0275521 | 37.500 | 152 | 92 | 3 | 3 | 152 | 5 | 155 | 6.01e-21 | 89.0 |
| Msa0719700 | MtrunA17_Chr2g0282011 | 36.434 | 129 | 81 | 1 | 3 | 131 | 6 | 133 | 2.30e-19 | 84.7 |
| Msa0719700 | MtrunA17_Chr2g0281991 | 34.194 | 155 | 93 | 3 | 3 | 156 | 6 | 152 | 1.46e-18 | 82.4 |
| Msa0719700 | MtrunA17_Chr2g0282001 | 34.615 | 130 | 84 | 1 | 2 | 131 | 4 | 132 | 5.41e-17 | 78.2 |
| Msa0719700 | MtrunA17_Chr4g0039331 | 28.467 | 137 | 73 | 1 | 88 | 199 | 2 | 138 | 3.33e-13 | 64.7 |
| Msa0719700 | MtrunA17_Chr7g0245711 | 34.579 | 107 | 67 | 3 | 38 | 144 | 4 | 107 | 4.06e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719700 | AT4G35420.1 | 68.919 | 148 | 45 | 1 | 4 | 151 | 7 | 153 | 2.15e-66 | 207 |
| Msa0719700 | AT4G35420.1 | 55.556 | 54 | 24 | 0 | 144 | 197 | 224 | 277 | 8.49e-16 | 75.1 |
| Msa0719700 | AT1G51410.1 | 52.980 | 151 | 69 | 2 | 2 | 151 | 6 | 155 | 2.74e-43 | 148 |
| Msa0719700 | AT1G09480.2 | 55.039 | 129 | 57 | 1 | 5 | 133 | 8 | 135 | 4.05e-43 | 147 |
| Msa0719700 | AT1G09480.1 | 55.039 | 129 | 57 | 1 | 5 | 133 | 55 | 182 | 9.05e-43 | 147 |
| Msa0719700 | AT1G09490.1 | 52.083 | 144 | 67 | 2 | 5 | 147 | 8 | 150 | 6.93e-42 | 144 |
| Msa0719700 | AT1G66800.1 | 50.000 | 146 | 69 | 2 | 5 | 150 | 8 | 149 | 2.53e-41 | 142 |
| Msa0719700 | AT1G09510.1 | 52.482 | 141 | 65 | 2 | 5 | 144 | 8 | 147 | 3.39e-40 | 140 |
| Msa0719700 | AT1G09500.3 | 47.945 | 146 | 75 | 1 | 5 | 149 | 8 | 153 | 3.87e-40 | 139 |
| Msa0719700 | AT5G19440.1 | 48.000 | 175 | 81 | 4 | 5 | 179 | 10 | 174 | 5.86e-40 | 139 |
| Msa0719700 | AT1G09500.1 | 47.945 | 146 | 75 | 1 | 5 | 149 | 8 | 153 | 8.59e-40 | 139 |
| Msa0719700 | AT4G27250.2 | 36.364 | 209 | 102 | 8 | 6 | 195 | 14 | 210 | 5.01e-32 | 119 |
| Msa0719700 | AT5G42800.1 | 48.062 | 129 | 66 | 1 | 5 | 133 | 8 | 135 | 5.16e-32 | 119 |
| Msa0719700 | AT4G27250.1 | 36.493 | 211 | 99 | 8 | 6 | 195 | 14 | 210 | 5.83e-32 | 119 |
| Msa0719700 | AT5G58490.1 | 43.972 | 141 | 74 | 2 | 5 | 145 | 9 | 144 | 1.16e-30 | 115 |
| Msa0719700 | AT1G68540.1 | 42.446 | 139 | 79 | 1 | 7 | 144 | 6 | 144 | 1.35e-30 | 115 |
| Msa0719700 | AT1G61720.1 | 40.541 | 148 | 86 | 2 | 4 | 151 | 12 | 157 | 4.41e-30 | 114 |
| Msa0719700 | AT1G25460.1 | 43.151 | 146 | 80 | 3 | 7 | 151 | 6 | 149 | 2.69e-29 | 111 |
| Msa0719700 | AT2G33590.1 | 47.183 | 142 | 71 | 3 | 4 | 144 | 8 | 146 | 1.10e-28 | 110 |
| Msa0719700 | AT2G33600.1 | 51.376 | 109 | 52 | 1 | 4 | 112 | 8 | 115 | 5.82e-28 | 108 |
| Msa0719700 | AT2G02400.1 | 38.095 | 147 | 88 | 2 | 5 | 151 | 6 | 149 | 9.50e-27 | 104 |
| Msa0719700 | AT1G09490.2 | 48.182 | 110 | 55 | 2 | 39 | 147 | 11 | 119 | 4.48e-26 | 102 |
| Msa0719700 | AT1G76470.1 | 50.893 | 112 | 54 | 1 | 4 | 115 | 6 | 116 | 5.76e-26 | 102 |
| Msa0719700 | AT1G15950.6 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 4.56e-25 | 99.4 |
| Msa0719700 | AT1G15950.5 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 4.96e-25 | 99.4 |
| Msa0719700 | AT1G15950.4 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 7.39e-25 | 99.4 |
| Msa0719700 | AT2G45400.4 | 45.802 | 131 | 64 | 4 | 5 | 132 | 40 | 166 | 9.81e-25 | 98.2 |
| Msa0719700 | AT1G15950.3 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 1.08e-24 | 99.8 |
| Msa0719700 | AT1G15950.1 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 1.08e-24 | 99.8 |
| Msa0719700 | AT1G15950.2 | 42.857 | 147 | 77 | 4 | 5 | 151 | 13 | 152 | 1.48e-24 | 99.4 |
| Msa0719700 | AT1G09500.2 | 44.643 | 112 | 61 | 1 | 39 | 149 | 8 | 119 | 1.68e-24 | 98.2 |
| Msa0719700 | AT2G45400.2 | 45.802 | 131 | 64 | 4 | 5 | 132 | 40 | 166 | 1.81e-24 | 98.6 |
| Msa0719700 | AT2G45400.1 | 45.802 | 131 | 64 | 4 | 5 | 132 | 40 | 166 | 3.43e-24 | 98.6 |
| Msa0719700 | AT1G80820.2 | 41.497 | 147 | 79 | 4 | 5 | 151 | 8 | 147 | 8.15e-23 | 93.2 |
| Msa0719700 | AT1G80820.1 | 41.497 | 147 | 79 | 4 | 5 | 151 | 8 | 147 | 2.21e-22 | 93.2 |
| Msa0719700 | AT2G45400.3 | 40.206 | 97 | 53 | 3 | 37 | 132 | 17 | 109 | 6.13e-12 | 63.9 |
| Msa0719700 | AT2G23910.3 | 26.712 | 146 | 103 | 2 | 6 | 151 | 11 | 152 | 3.90e-11 | 61.2 |
| Msa0719700 | AT2G23910.2 | 26.712 | 146 | 103 | 2 | 6 | 151 | 11 | 152 | 4.05e-11 | 61.2 |
| Msa0719700 | AT2G23910.1 | 26.712 | 146 | 103 | 2 | 6 | 151 | 11 | 152 | 5.25e-11 | 61.2 |
Find 42 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAAAGTTGAACATTTA+TGG | 0.085081 | 5_1:-15142929 | Msa0719700:CDS |
| ATTAGAACAGTTAGAGATTT+AGG | 0.154769 | 5_1:-15143049 | Msa0719700:intron |
| TAGCTTCGACAATGCGATTA+TGG | 0.197247 | 5_1:-15142847 | Msa0719700:CDS |
| ACTAGTCCAAGCTGATTTAA+TGG | 0.234242 | 5_1:-15142877 | Msa0719700:CDS |
| CGCAAGGACACTCTACCTTT+TGG | 0.261628 | 5_1:+15141727 | None:intergenic |
| GACTCGTCTATTGGTATGTT+TGG | 0.328808 | 5_1:+15142470 | None:intergenic |
| AGTTGAACATTTATGGAAGT+TGG | 0.340616 | 5_1:-15142922 | Msa0719700:CDS |
| AATAATTGATAATGATGATT+TGG | 0.352042 | 5_1:-15141788 | Msa0719700:CDS |
| AGGATCATTTGATATATGAT+TGG | 0.357612 | 5_1:+15142788 | None:intergenic |
| CAAAATACAGGCAGAAATCT+TGG | 0.360481 | 5_1:-15142609 | Msa0719700:intron |
| GAATGCAAAGTATGTGTAAC+AGG | 0.368238 | 5_1:-15143133 | Msa0719700:CDS |
| AGCTTCGACAATGCGATTAT+GGG | 0.388369 | 5_1:-15142846 | Msa0719700:CDS |
| CTCCAAGATGACTCGTCTAT+TGG | 0.402699 | 5_1:+15142461 | None:intergenic |
| GGATCATTTGATATATGATT+GGG | 0.413478 | 5_1:+15142789 | None:intergenic |
| GTATGTGTAACAGGAGCTTC+AGG | 0.422762 | 5_1:-15143124 | Msa0719700:CDS |
| TTTCTTCCATTAAATCAGCT+TGG | 0.450929 | 5_1:+15142871 | None:intergenic |
| TAGAGTGTCCTTGCGTTTCA+CGG | 0.461971 | 5_1:-15141719 | Msa0719700:CDS |
| AACACAACTCGAACATGGGC+TGG | 0.466054 | 5_1:+15142536 | None:intergenic |
| TTTGATATATGATTGGGTAC+TGG | 0.478192 | 5_1:+15142795 | None:intergenic |
| ATGCTAGCAAATCGTTATCC+TGG | 0.493557 | 5_1:-15141760 | Msa0719700:CDS |
| GGCTAACACAACTCGAACAT+GGG | 0.497892 | 5_1:+15142532 | None:intergenic |
| AGGCTTTGTTCTCATAAAGA+AGG | 0.503784 | 5_1:+15141839 | None:intergenic |
| TTTAGCGTACCTTGGACCGC+TGG | 0.513714 | 5_1:+15142584 | None:intergenic |
| CGGCTAACACAACTCGAACA+TGG | 0.521148 | 5_1:+15142531 | None:intergenic |
| ACAACACATTTAGCGTACCT+TGG | 0.521196 | 5_1:+15142576 | None:intergenic |
| TCATATATCAAATGATCCTA+AGG | 0.522536 | 5_1:-15142784 | Msa0719700:intron |
| CCTGGTTTCCCATTCCCAAA+AGG | 0.524676 | 5_1:-15141742 | Msa0719700:CDS |
| ACTAGTTTGAGTCTTTCTGT+TGG | 0.538144 | 5_1:+15142894 | None:intergenic |
| TGAACATTTATGGAAGTTGG+AGG | 0.548932 | 5_1:-15142919 | Msa0719700:CDS |
| CAATTATTGCTGAACTGCAA+AGG | 0.555112 | 5_1:+15141803 | None:intergenic |
| TATGAGAACAAAGCCTCTCA+TGG | 0.568344 | 5_1:-15141832 | Msa0719700:CDS |
| ATCTTGGAACCAGCGGTCCA+AGG | 0.581499 | 5_1:-15142593 | Msa0719700:CDS |
| AGGATAACGATTTGCTAGCA+TGG | 0.597463 | 5_1:+15141762 | None:intergenic |
| GAACATTTATGGAAGTTGGA+GGG | 0.598986 | 5_1:-15142918 | Msa0719700:CDS |
| AATGCGATTATGGGATGCAA+AGG | 0.600616 | 5_1:-15142837 | Msa0719700:CDS |
| GTGAACCACCGTGAAACGCA+AGG | 0.619513 | 5_1:+15141711 | None:intergenic |
| AGAACAAAGCCTCTCATGGT+AGG | 0.634432 | 5_1:-15141828 | Msa0719700:CDS |
| GCAAAGGTACCTACCATGAG+AGG | 0.646700 | 5_1:+15141819 | None:intergenic |
| TATATGATTGGGTACTGGAG+AGG | 0.647630 | 5_1:+15142800 | None:intergenic |
| GGCAGAAATCTTGGAACCAG+CGG | 0.649586 | 5_1:-15142600 | Msa0719700:CDS |
| AGTGTCCTTGCGTTTCACGG+TGG | 0.687838 | 5_1:-15141716 | Msa0719700:CDS |
| ACTAACAGCTGAAGATGACG+CGG | 0.706152 | 5_1:+15142511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTTATATTTTTCAT+AGG | - | chr5_1:15142074-15142093 | Msa0719700:intron | 10.0% |
| !!! | ATTTCATTTATATTTTTCAT+AGG | - | chr5_1:15142074-15142093 | Msa0719700:intron | 10.0% |
| !! | TACAAATATATAATTACTTG+AGG | + | chr5_1:15142432-15142451 | None:intergenic | 15.0% |
| !! | GTAATAGTAATACTATAAAA+GGG | + | chr5_1:15142515-15142534 | None:intergenic | 15.0% |
| !! | AGTAATAGTAATACTATAAA+AGG | + | chr5_1:15142516-15142535 | None:intergenic | 15.0% |
| !!! | AATAATTGATAATGATGATT+TGG | - | chr5_1:15143041-15143060 | Msa0719700:intron | 15.0% |
| !! | TACAAATATATAATTACTTG+AGG | + | chr5_1:15142432-15142451 | None:intergenic | 15.0% |
| !! | GTAATAGTAATACTATAAAA+GGG | + | chr5_1:15142515-15142534 | None:intergenic | 15.0% |
| !! | AGTAATAGTAATACTATAAA+AGG | + | chr5_1:15142516-15142535 | None:intergenic | 15.0% |
| !!! | AATAATTGATAATGATGATT+TGG | - | chr5_1:15143041-15143060 | Msa0719700:intron | 15.0% |
| !! | ACAAACATGTTATTGAATTA+GGG | - | chr5_1:15142644-15142663 | Msa0719700:intron | 20.0% |
| !!! | TGTTAGTTTAATTAGCAATA+TGG | + | chr5_1:15142896-15142915 | None:intergenic | 20.0% |
| !! | ATATTGCTAATTAAACTAAC+AGG | - | chr5_1:15142895-15142914 | Msa0719700:CDS | 20.0% |
| !! | TATTGCTAATTAAACTAACA+GGG | - | chr5_1:15142896-15142915 | Msa0719700:CDS | 20.0% |
| !! | ACAAACATGTTATTGAATTA+GGG | - | chr5_1:15142644-15142663 | Msa0719700:intron | 20.0% |
| !!! | TGTTAGTTTAATTAGCAATA+TGG | + | chr5_1:15142896-15142915 | None:intergenic | 20.0% |
| !! | ATATTGCTAATTAAACTAAC+AGG | - | chr5_1:15142895-15142914 | Msa0719700:CDS | 20.0% |
| !! | TATTGCTAATTAAACTAACA+GGG | - | chr5_1:15142896-15142915 | Msa0719700:CDS | 20.0% |
| ! | ATTAGAACAGTTAGAGATTT+AGG | - | chr5_1:15141780-15141799 | Msa0719700:CDS | 25.0% |
| ! | GTGAAAAGTGAAAATACATT+TGG | + | chr5_1:15141826-15141845 | None:intergenic | 25.0% |
| ! | CCTGCAAGTATATATAAAAA+TGG | + | chr5_1:15141875-15141894 | None:intergenic | 25.0% |
| !!! | CCATTTTTATATATACTTGC+AGG | - | chr5_1:15141872-15141891 | Msa0719700:CDS | 25.0% |
| ! | AGCATAAAGTTGAACATTTA+TGG | - | chr5_1:15141900-15141919 | Msa0719700:intron | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | + | chr5_1:15142043-15142062 | None:intergenic | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | + | chr5_1:15142044-15142063 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | - | chr5_1:15142045-15142064 | Msa0719700:intron | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | + | chr5_1:15142064-15142083 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | - | chr5_1:15142208-15142227 | Msa0719700:intron | 25.0% |
| ! | AGATAATGAAATGTAATTCG+AGG | - | chr5_1:15142567-15142586 | Msa0719700:CDS | 25.0% |
| ! | GACAAACATGTTATTGAATT+AGG | - | chr5_1:15142643-15142662 | Msa0719700:intron | 25.0% |
| ! | ATTCTACCATCATTCATAAT+TGG | - | chr5_1:15142747-15142766 | Msa0719700:intron | 25.0% |
| ! | ATTGCTAATTAAACTAACAG+GGG | - | chr5_1:15142897-15142916 | Msa0719700:CDS | 25.0% |
| ! | ATTAGAACAGTTAGAGATTT+AGG | - | chr5_1:15141780-15141799 | Msa0719700:CDS | 25.0% |
| ! | GTGAAAAGTGAAAATACATT+TGG | + | chr5_1:15141826-15141845 | None:intergenic | 25.0% |
| ! | CCTGCAAGTATATATAAAAA+TGG | + | chr5_1:15141875-15141894 | None:intergenic | 25.0% |
| !!! | CCATTTTTATATATACTTGC+AGG | - | chr5_1:15141872-15141891 | Msa0719700:CDS | 25.0% |
| ! | AGCATAAAGTTGAACATTTA+TGG | - | chr5_1:15141900-15141919 | Msa0719700:intron | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | + | chr5_1:15142043-15142062 | None:intergenic | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | + | chr5_1:15142044-15142063 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | - | chr5_1:15142045-15142064 | Msa0719700:intron | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | + | chr5_1:15142064-15142083 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | - | chr5_1:15142208-15142227 | Msa0719700:intron | 25.0% |
| ! | AGATAATGAAATGTAATTCG+AGG | - | chr5_1:15142567-15142586 | Msa0719700:CDS | 25.0% |
| ! | GACAAACATGTTATTGAATT+AGG | - | chr5_1:15142643-15142662 | Msa0719700:intron | 25.0% |
| ! | ATTCTACCATCATTCATAAT+TGG | - | chr5_1:15142747-15142766 | Msa0719700:intron | 25.0% |
| ! | ATTGCTAATTAAACTAACAG+GGG | - | chr5_1:15142897-15142916 | Msa0719700:CDS | 25.0% |
| AGTTGAACATTTATGGAAGT+TGG | - | chr5_1:15141907-15141926 | Msa0719700:intron | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | + | chr5_1:15141961-15141980 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | + | chr5_1:15142037-15142056 | None:intergenic | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | + | chr5_1:15142116-15142135 | None:intergenic | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | - | chr5_1:15142130-15142149 | Msa0719700:intron | 30.0% | |
| GGGAAACATAGAAATTTCAA+TGG | - | chr5_1:15142917-15142936 | Msa0719700:CDS | 30.0% | |
| ACATAGAAATTTCAATGGCA+TGG | - | chr5_1:15142922-15142941 | Msa0719700:CDS | 30.0% | |
| AGTTGAACATTTATGGAAGT+TGG | - | chr5_1:15141907-15141926 | Msa0719700:intron | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | + | chr5_1:15141961-15141980 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | + | chr5_1:15142037-15142056 | None:intergenic | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | + | chr5_1:15142116-15142135 | None:intergenic | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | - | chr5_1:15142130-15142149 | Msa0719700:intron | 30.0% | |
| GGGAAACATAGAAATTTCAA+TGG | - | chr5_1:15142917-15142936 | Msa0719700:CDS | 30.0% | |
| ACATAGAAATTTCAATGGCA+TGG | - | chr5_1:15142922-15142941 | Msa0719700:CDS | 30.0% | |
| GAATGCAAAGTATGTGTAAC+AGG | - | chr5_1:15141696-15141715 | Msa0719700:CDS | 35.0% | |
| ! | ATGAAGCGACTTCTTTTGTT+TGG | - | chr5_1:15141747-15141766 | Msa0719700:CDS | 35.0% |
| TGAACATTTATGGAAGTTGG+AGG | - | chr5_1:15141910-15141929 | Msa0719700:intron | 35.0% | |
| GAACATTTATGGAAGTTGGA+GGG | - | chr5_1:15141911-15141930 | Msa0719700:intron | 35.0% | |
| ! | ACTAGTTTGAGTCTTTCTGT+TGG | + | chr5_1:15141938-15141957 | None:intergenic | 35.0% |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | - | chr5_1:15141952-15141971 | Msa0719700:intron | 35.0% |
| ! | CAAGATTTCTGCCTGTATTT+TGG | + | chr5_1:15142222-15142241 | None:intergenic | 35.0% |
| CAAAATACAGGCAGAAATCT+TGG | - | chr5_1:15142220-15142239 | Msa0719700:intron | 35.0% | |
| CATGTTATTGAATTAGGGCA+TGG | - | chr5_1:15142649-15142668 | Msa0719700:intron | 35.0% | |
| TGGGAATATTGCAATGAGAA+AGG | - | chr5_1:15142708-15142727 | Msa0719700:intron | 35.0% | |
| CAATGAGAAAGGAATAGACT+TGG | - | chr5_1:15142719-15142738 | Msa0719700:intron | 35.0% | |
| CTAGGTCCAATTATGAATGA+TGG | + | chr5_1:15142756-15142775 | None:intergenic | 35.0% | |
| CATAAATATGTTGGCAAGCT+AGG | + | chr5_1:15142774-15142793 | None:intergenic | 35.0% | |
| GCAGTGGAACATAAATATGT+TGG | + | chr5_1:15142783-15142802 | None:intergenic | 35.0% | |
| AGAAATTTCAATGGCATGGA+AGG | - | chr5_1:15142926-15142945 | Msa0719700:CDS | 35.0% | |
| !! | AGGCTTTGTTCTCATAAAGA+AGG | + | chr5_1:15142993-15143012 | None:intergenic | 35.0% |
| CAATTATTGCTGAACTGCAA+AGG | + | chr5_1:15143029-15143048 | None:intergenic | 35.0% | |
| GAATGCAAAGTATGTGTAAC+AGG | - | chr5_1:15141696-15141715 | Msa0719700:CDS | 35.0% | |
| ! | ATGAAGCGACTTCTTTTGTT+TGG | - | chr5_1:15141747-15141766 | Msa0719700:CDS | 35.0% |
| TGAACATTTATGGAAGTTGG+AGG | - | chr5_1:15141910-15141929 | Msa0719700:intron | 35.0% | |
| GAACATTTATGGAAGTTGGA+GGG | - | chr5_1:15141911-15141930 | Msa0719700:intron | 35.0% | |
| ! | ACTAGTTTGAGTCTTTCTGT+TGG | + | chr5_1:15141938-15141957 | None:intergenic | 35.0% |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | - | chr5_1:15141952-15141971 | Msa0719700:intron | 35.0% |
| ! | CAAGATTTCTGCCTGTATTT+TGG | + | chr5_1:15142222-15142241 | None:intergenic | 35.0% |
| CAAAATACAGGCAGAAATCT+TGG | - | chr5_1:15142220-15142239 | Msa0719700:intron | 35.0% | |
| CATGTTATTGAATTAGGGCA+TGG | - | chr5_1:15142649-15142668 | Msa0719700:intron | 35.0% | |
| TGGGAATATTGCAATGAGAA+AGG | - | chr5_1:15142708-15142727 | Msa0719700:intron | 35.0% | |
| CAATGAGAAAGGAATAGACT+TGG | - | chr5_1:15142719-15142738 | Msa0719700:intron | 35.0% | |
| CTAGGTCCAATTATGAATGA+TGG | + | chr5_1:15142756-15142775 | None:intergenic | 35.0% | |
| CATAAATATGTTGGCAAGCT+AGG | + | chr5_1:15142774-15142793 | None:intergenic | 35.0% | |
| GCAGTGGAACATAAATATGT+TGG | + | chr5_1:15142783-15142802 | None:intergenic | 35.0% | |
| AGAAATTTCAATGGCATGGA+AGG | - | chr5_1:15142926-15142945 | Msa0719700:CDS | 35.0% | |
| !! | AGGCTTTGTTCTCATAAAGA+AGG | + | chr5_1:15142993-15143012 | None:intergenic | 35.0% |
| CAATTATTGCTGAACTGCAA+AGG | + | chr5_1:15143029-15143048 | None:intergenic | 35.0% | |
| TAGCTTCGACAATGCGATTA+TGG | - | chr5_1:15141982-15142001 | Msa0719700:intron | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | - | chr5_1:15141983-15142002 | Msa0719700:intron | 40.0% | |
| AATGCGATTATGGGATGCAA+AGG | - | chr5_1:15141992-15142011 | Msa0719700:intron | 40.0% | |
| !! | TATATGATTGGGTACTGGAG+AGG | + | chr5_1:15142032-15142051 | None:intergenic | 40.0% |
| TGTATAGTCTCCATGATGTG+AGG | + | chr5_1:15142143-15142162 | None:intergenic | 40.0% | |
| ACAACACATTTAGCGTACCT+TGG | + | chr5_1:15142256-15142275 | None:intergenic | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | + | chr5_1:15142362-15142381 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | - | chr5_1:15142366-15142385 | Msa0719700:intron | 40.0% | |
| TGAATTGTGTGAGAAACTCC+AGG | - | chr5_1:15142397-15142416 | Msa0719700:intron | 40.0% | |
| TACTTGAGGAAATGTGTACC+TGG | + | chr5_1:15142418-15142437 | None:intergenic | 40.0% | |
| ATTTCAATGGCATGGAAGGA+TGG | - | chr5_1:15142930-15142949 | Msa0719700:CDS | 40.0% | |
| TTTCAATGGCATGGAAGGAT+GGG | - | chr5_1:15142931-15142950 | Msa0719700:CDS | 40.0% | |
| TATGAGAACAAAGCCTCTCA+TGG | - | chr5_1:15142997-15143016 | Msa0719700:intron | 40.0% | |
| !! | AGGATAACGATTTGCTAGCA+TGG | + | chr5_1:15143070-15143089 | None:intergenic | 40.0% |
| ATGCTAGCAAATCGTTATCC+TGG | - | chr5_1:15143069-15143088 | Msa0719700:CDS | 40.0% | |
| !! | ACACTCTACCTTTTGGGAAT+GGG | + | chr5_1:15143098-15143117 | None:intergenic | 40.0% |
| TAGCTTCGACAATGCGATTA+TGG | - | chr5_1:15141982-15142001 | Msa0719700:intron | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | - | chr5_1:15141983-15142002 | Msa0719700:intron | 40.0% | |
| AATGCGATTATGGGATGCAA+AGG | - | chr5_1:15141992-15142011 | Msa0719700:intron | 40.0% | |
| !! | TATATGATTGGGTACTGGAG+AGG | + | chr5_1:15142032-15142051 | None:intergenic | 40.0% |
| TGTATAGTCTCCATGATGTG+AGG | + | chr5_1:15142143-15142162 | None:intergenic | 40.0% | |
| ACAACACATTTAGCGTACCT+TGG | + | chr5_1:15142256-15142275 | None:intergenic | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | + | chr5_1:15142362-15142381 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | - | chr5_1:15142366-15142385 | Msa0719700:intron | 40.0% | |
| TGAATTGTGTGAGAAACTCC+AGG | - | chr5_1:15142397-15142416 | Msa0719700:intron | 40.0% | |
| TACTTGAGGAAATGTGTACC+TGG | + | chr5_1:15142418-15142437 | None:intergenic | 40.0% | |
| ATTTCAATGGCATGGAAGGA+TGG | - | chr5_1:15142930-15142949 | Msa0719700:CDS | 40.0% | |
| TTTCAATGGCATGGAAGGAT+GGG | - | chr5_1:15142931-15142950 | Msa0719700:CDS | 40.0% | |
| TATGAGAACAAAGCCTCTCA+TGG | - | chr5_1:15142997-15143016 | Msa0719700:intron | 40.0% | |
| !! | AGGATAACGATTTGCTAGCA+TGG | + | chr5_1:15143070-15143089 | None:intergenic | 40.0% |
| ATGCTAGCAAATCGTTATCC+TGG | - | chr5_1:15143069-15143088 | Msa0719700:CDS | 40.0% | |
| !! | ACACTCTACCTTTTGGGAAT+GGG | + | chr5_1:15143098-15143117 | None:intergenic | 40.0% |
| GTATGTGTAACAGGAGCTTC+AGG | - | chr5_1:15141705-15141724 | Msa0719700:CDS | 45.0% | |
| ! | AACAGGAGCTTCAGGCTTTT+TGG | - | chr5_1:15141713-15141732 | Msa0719700:CDS | 45.0% |
| !!! | CTTCAGGCTTTTTGGCTTCT+TGG | - | chr5_1:15141721-15141740 | Msa0719700:CDS | 45.0% |
| GGCTAACACAACTCGAACAT+GGG | + | chr5_1:15142300-15142319 | None:intergenic | 45.0% | |
| ACTAACAGCTGAAGATGACG+CGG | + | chr5_1:15142321-15142340 | None:intergenic | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | + | chr5_1:15142371-15142390 | None:intergenic | 45.0% | |
| TTGAATTAGGGCATGGTACC+CGG | - | chr5_1:15142656-15142675 | Msa0719700:intron | 45.0% | |
| ACTGGCAGAAAAAGCAGCTT+GGG | - | chr5_1:15142689-15142708 | Msa0719700:intron | 45.0% | |
| ! | GATGTGCTAGGCTTGTTCAA+AGG | - | chr5_1:15142807-15142826 | Msa0719700:CDS | 45.0% |
| AGAACAAAGCCTCTCATGGT+AGG | - | chr5_1:15143001-15143020 | Msa0719700:intron | 45.0% | |
| !! | GACACTCTACCTTTTGGGAA+TGG | + | chr5_1:15143099-15143118 | None:intergenic | 45.0% |
| ! | GCAAGGACACTCTACCTTTT+GGG | + | chr5_1:15143104-15143123 | None:intergenic | 45.0% |
| ! | TAGAGTGTCCTTGCGTTTCA+CGG | - | chr5_1:15143110-15143129 | Msa0719700:CDS | 45.0% |
| GTATGTGTAACAGGAGCTTC+AGG | - | chr5_1:15141705-15141724 | Msa0719700:CDS | 45.0% | |
| ! | AACAGGAGCTTCAGGCTTTT+TGG | - | chr5_1:15141713-15141732 | Msa0719700:CDS | 45.0% |
| !!! | CTTCAGGCTTTTTGGCTTCT+TGG | - | chr5_1:15141721-15141740 | Msa0719700:CDS | 45.0% |
| GGCTAACACAACTCGAACAT+GGG | + | chr5_1:15142300-15142319 | None:intergenic | 45.0% | |
| ACTAACAGCTGAAGATGACG+CGG | + | chr5_1:15142321-15142340 | None:intergenic | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | + | chr5_1:15142371-15142390 | None:intergenic | 45.0% | |
| TTGAATTAGGGCATGGTACC+CGG | - | chr5_1:15142656-15142675 | Msa0719700:intron | 45.0% | |
| ACTGGCAGAAAAAGCAGCTT+GGG | - | chr5_1:15142689-15142708 | Msa0719700:intron | 45.0% | |
| ! | GATGTGCTAGGCTTGTTCAA+AGG | - | chr5_1:15142807-15142826 | Msa0719700:CDS | 45.0% |
| AGAACAAAGCCTCTCATGGT+AGG | - | chr5_1:15143001-15143020 | Msa0719700:intron | 45.0% | |
| !! | GACACTCTACCTTTTGGGAA+TGG | + | chr5_1:15143099-15143118 | None:intergenic | 45.0% |
| ! | GCAAGGACACTCTACCTTTT+GGG | + | chr5_1:15143104-15143123 | None:intergenic | 45.0% |
| ! | TAGAGTGTCCTTGCGTTTCA+CGG | - | chr5_1:15143110-15143129 | Msa0719700:CDS | 45.0% |
| !!! | TTTTTTTTTTATTTTACAAA+TGG | - | chr5_1:15142601-15142620 | Msa0719700:CDS | 5.0% |
| !!! | TTTTTTTTTTATTTTACAAA+TGG | - | chr5_1:15142601-15142620 | Msa0719700:CDS | 5.0% |
| GGCAGAAATCTTGGAACCAG+CGG | - | chr5_1:15142229-15142248 | Msa0719700:intron | 50.0% | |
| AACACAACTCGAACATGGGC+TGG | + | chr5_1:15142296-15142315 | None:intergenic | 50.0% | |
| CGGCTAACACAACTCGAACA+TGG | + | chr5_1:15142301-15142320 | None:intergenic | 50.0% | |
| !! | TCTGCCAGTGTCTTTGAGAC+CGG | + | chr5_1:15142678-15142697 | None:intergenic | 50.0% |
| CACTGGCAGAAAAAGCAGCT+TGG | - | chr5_1:15142688-15142707 | Msa0719700:intron | 50.0% | |
| TCCACTGCATCTGATGTGCT+AGG | - | chr5_1:15142795-15142814 | Msa0719700:CDS | 50.0% | |
| !! | GCAAAGGTACCTACCATGAG+AGG | + | chr5_1:15143013-15143032 | None:intergenic | 50.0% |
| !! | CCTTTTGGGAATGGGAAACC+AGG | + | chr5_1:15143090-15143109 | None:intergenic | 50.0% |
| CCTGGTTTCCCATTCCCAAA+AGG | - | chr5_1:15143087-15143106 | Msa0719700:CDS | 50.0% | |
| ! | CGCAAGGACACTCTACCTTT+TGG | + | chr5_1:15143105-15143124 | None:intergenic | 50.0% |
| GGCAGAAATCTTGGAACCAG+CGG | - | chr5_1:15142229-15142248 | Msa0719700:intron | 50.0% | |
| AACACAACTCGAACATGGGC+TGG | + | chr5_1:15142296-15142315 | None:intergenic | 50.0% | |
| CGGCTAACACAACTCGAACA+TGG | + | chr5_1:15142301-15142320 | None:intergenic | 50.0% | |
| !! | TCTGCCAGTGTCTTTGAGAC+CGG | + | chr5_1:15142678-15142697 | None:intergenic | 50.0% |
| CACTGGCAGAAAAAGCAGCT+TGG | - | chr5_1:15142688-15142707 | Msa0719700:intron | 50.0% | |
| TCCACTGCATCTGATGTGCT+AGG | - | chr5_1:15142795-15142814 | Msa0719700:CDS | 50.0% | |
| !! | GCAAAGGTACCTACCATGAG+AGG | + | chr5_1:15143013-15143032 | None:intergenic | 50.0% |
| !! | CCTTTTGGGAATGGGAAACC+AGG | + | chr5_1:15143090-15143109 | None:intergenic | 50.0% |
| CCTGGTTTCCCATTCCCAAA+AGG | - | chr5_1:15143087-15143106 | Msa0719700:CDS | 50.0% | |
| ! | CGCAAGGACACTCTACCTTT+TGG | + | chr5_1:15143105-15143124 | None:intergenic | 50.0% |
| ATCTTGGAACCAGCGGTCCA+AGG | - | chr5_1:15142236-15142255 | Msa0719700:intron | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | + | chr5_1:15142248-15142267 | None:intergenic | 55.0% | |
| GTACCCGGTCTCAAAGACAC+TGG | - | chr5_1:15142671-15142690 | Msa0719700:intron | 55.0% | |
| !! | CTGCCAGTGTCTTTGAGACC+GGG | + | chr5_1:15142677-15142696 | None:intergenic | 55.0% |
| GCCTAGCACATCAGATGCAG+TGG | + | chr5_1:15142799-15142818 | None:intergenic | 55.0% | |
| AGTGTCCTTGCGTTTCACGG+TGG | - | chr5_1:15143113-15143132 | Msa0719700:CDS | 55.0% | |
| GTGAACCACCGTGAAACGCA+AGG | + | chr5_1:15143121-15143140 | None:intergenic | 55.0% | |
| ATCTTGGAACCAGCGGTCCA+AGG | - | chr5_1:15142236-15142255 | Msa0719700:intron | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | + | chr5_1:15142248-15142267 | None:intergenic | 55.0% | |
| GTACCCGGTCTCAAAGACAC+TGG | - | chr5_1:15142671-15142690 | Msa0719700:intron | 55.0% | |
| !! | CTGCCAGTGTCTTTGAGACC+GGG | + | chr5_1:15142677-15142696 | None:intergenic | 55.0% |
| GCCTAGCACATCAGATGCAG+TGG | + | chr5_1:15142799-15142818 | None:intergenic | 55.0% | |
| AGTGTCCTTGCGTTTCACGG+TGG | - | chr5_1:15143113-15143132 | Msa0719700:CDS | 55.0% | |
| GTGAACCACCGTGAAACGCA+AGG | + | chr5_1:15143121-15143140 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15141693 | 15143158 | 15141693 | ID=Msa0719700;Name=Msa0719700 |
| chr5_1 | mRNA | 15141693 | 15143158 | 15141693 | ID=Msa0719700-mRNA-1;Parent=Msa0719700;Name=Msa0719700-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0.66|0.5|4|0|214 |
| chr5_1 | exon | 15143050 | 15143158 | 15143050 | ID=Msa0719700-mRNA-1:exon:5875;Parent=Msa0719700-mRNA-1 |
| chr5_1 | exon | 15142785 | 15142957 | 15142785 | ID=Msa0719700-mRNA-1:exon:5874;Parent=Msa0719700-mRNA-1 |
| chr5_1 | exon | 15142473 | 15142621 | 15142473 | ID=Msa0719700-mRNA-1:exon:5873;Parent=Msa0719700-mRNA-1 |
| chr5_1 | exon | 15141693 | 15141903 | 15141693 | ID=Msa0719700-mRNA-1:exon:5872;Parent=Msa0719700-mRNA-1 |
| chr5_1 | CDS | 15143050 | 15143158 | 15143050 | ID=Msa0719700-mRNA-1:cds;Parent=Msa0719700-mRNA-1 |
| chr5_1 | CDS | 15142785 | 15142957 | 15142785 | ID=Msa0719700-mRNA-1:cds;Parent=Msa0719700-mRNA-1 |
| chr5_1 | CDS | 15142473 | 15142621 | 15142473 | ID=Msa0719700-mRNA-1:cds;Parent=Msa0719700-mRNA-1 |
| chr5_1 | CDS | 15141693 | 15141903 | 15141693 | ID=Msa0719700-mRNA-1:cds;Parent=Msa0719700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
