Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0129460 | XP_003591588.1 | 98.586 | 495 | 7 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1019 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0129460 | sp|O24467|LE14B_PRUAR | 70.833 | 456 | 128 | 3 | 18 | 472 | 5 | 456 | 0.0 | 667 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0129460 | G7I2T4 | 98.586 | 495 | 7 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1019 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0083030 | Msa0129460 | 0.954100 | 6.308434e-112 | -8.615850e-47 |
Msa0129460 | Msa1416350 | 0.941027 | 8.476366e-101 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0129460 | MtrunA17_Chr1g0196321 | 98.586 | 495 | 7 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1019 |
Msa0129460 | MtrunA17_Chr2g0286731 | 69.954 | 436 | 127 | 2 | 49 | 484 | 32 | 463 | 0.0 | 645 |
Msa0129460 | MtrunA17_Chr7g0253861 | 23.297 | 279 | 143 | 7 | 224 | 465 | 96 | 340 | 1.65e-16 | 80.9 |
Msa0129460 | MtrunA17_Chr4g0067151 | 26.800 | 250 | 164 | 6 | 224 | 464 | 76 | 315 | 9.39e-16 | 78.2 |
Msa0129460 | MtrunA17_Chr1g0185501 | 25.311 | 241 | 137 | 5 | 224 | 464 | 109 | 306 | 2.51e-15 | 77.0 |
Msa0129460 | MtrunA17_Chr3g0093681 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 2.72e-13 | 72.4 |
Msa0129460 | MtrunA17_Chr1g0172501 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 8.90e-13 | 70.5 |
Msa0129460 | MtrunA17_Chr6g0448921 | 30.667 | 150 | 93 | 3 | 224 | 373 | 57 | 195 | 9.02e-13 | 70.9 |
Msa0129460 | MtrunA17_Chr5g0405851 | 31.933 | 119 | 77 | 1 | 224 | 342 | 335 | 449 | 3.88e-11 | 65.1 |
Msa0129460 | MtrunA17_Chr8g0352821 | 23.554 | 242 | 135 | 7 | 229 | 468 | 228 | 421 | 5.14e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0129460 | AT4G03020.1 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0129460 | AT4G03020.2 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0129460 | AT4G03020.3 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0129460 | AT2G43770.1 | 23.843 | 281 | 139 | 6 | 224 | 465 | 94 | 338 | 4.11e-18 | 85.9 |
Msa0129460 | AT3G49660.1 | 24.542 | 273 | 181 | 7 | 208 | 468 | 53 | 312 | 3.95e-15 | 76.6 |
Msa0129460 | AT4G02730.1 | 26.141 | 241 | 125 | 7 | 224 | 459 | 126 | 318 | 7.67e-12 | 67.0 |
Msa0129460 | AT1G11160.1 | 24.696 | 247 | 138 | 7 | 224 | 469 | 56 | 255 | 1.19e-11 | 67.8 |
Msa0129460 | AT1G11160.2 | 24.696 | 247 | 138 | 7 | 224 | 469 | 56 | 255 | 1.21e-11 | 67.8 |
Msa0129460 | AT1G11160.4 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.34e-11 | 67.8 |
Msa0129460 | AT1G11160.3 | 24.696 | 247 | 138 | 6 | 224 | 469 | 14 | 213 | 1.36e-11 | 67.8 |
Msa0129460 | AT5G08390.1 | 29.333 | 150 | 95 | 3 | 224 | 373 | 57 | 195 | 2.12e-11 | 67.0 |
Msa0129460 | AT1G61210.3 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 5.16e-11 | 65.9 |
Msa0129460 | AT1G61210.1 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 7.82e-11 | 65.5 |
Msa0129460 | AT1G61210.2 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 8.53e-11 | 65.1 |
Msa0129460 | AT5G23430.1 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 8.74e-11 | 65.1 |
Msa0129460 | AT5G23430.3 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.05e-11 | 65.1 |
Msa0129460 | AT5G23430.2 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.05e-11 | 65.1 |
Find 120 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCTTCTGCTTTGGGTAAT+TGG | 0.178793 | 1_3:-59415878 | None:intergenic |
AATCTCTTACAGGTGATTTA+TGG | 0.181919 | 1_3:-59420865 | None:intergenic |
ATGTGCAAATTGTTACAAAA+AGG | 0.220757 | 1_3:-59415916 | None:intergenic |
CTATGCTCGTTAGCTCTTCT+TGG | 0.255220 | 1_3:+59420909 | Msa0129460:CDS |
AGCAGATATTTACCTGTAAA+TGG | 0.272385 | 1_3:+59417455 | Msa0129460:CDS |
ATATGATCTTGAAACAAATA+AGG | 0.306324 | 1_3:+59418246 | Msa0129460:CDS |
TAGCACTGGAAAATCTAAAA+AGG | 0.311940 | 1_3:+59417244 | Msa0129460:CDS |
ATATGGTGTTTGACATAATA+AGG | 0.315445 | 1_3:+59421106 | Msa0129460:three_prime_UTR |
GACGATGGAGGATACTCTTT+TGG | 0.318718 | 1_3:+59418151 | Msa0129460:CDS |
TTCATGGAATCTTCTGCTTT+GGG | 0.326986 | 1_3:-59415885 | None:intergenic |
GTTCATGGAATCTTCTGCTT+TGG | 0.330166 | 1_3:-59415886 | None:intergenic |
CCTTCCCCGTCCTGAACAAT+TGG | 0.339582 | 1_3:-59417402 | None:intergenic |
GTTGATATTGAAGTTGTATA+TGG | 0.348324 | 1_3:+59421089 | Msa0129460:three_prime_UTR |
TTTAAATAGCTCAGATGCTT+TGG | 0.350837 | 1_3:+59417076 | Msa0129460:five_prime_UTR |
AGCATCTTCACCGGGGAAAC+AGG | 0.359807 | 1_3:-59417365 | None:intergenic |
ACGTATGTCCCAAAGTTTGA+TGG | 0.361310 | 1_3:-59419153 | None:intergenic |
TGCACTTTACGTTGACCAAA+TGG | 0.380038 | 1_3:+59417151 | Msa0129460:CDS |
TGCCAACTACAATCTCTTAC+AGG | 0.382540 | 1_3:-59420875 | None:intergenic |
TTCCAGTGCTAGAATCTTCA+AGG | 0.382938 | 1_3:-59417232 | None:intergenic |
ATAGTTATGTACGCTATATC+TGG | 0.384746 | 1_3:+59417128 | Msa0129460:exon |
ACTGATTTAACTGACATCAT+AGG | 0.385029 | 1_3:-59421030 | None:intergenic |
CTTACTAGATGGCTTTGATC+AGG | 0.388290 | 1_3:-59417734 | None:intergenic |
ATCTGCTGGGAGCTCTGATA+TGG | 0.391469 | 1_3:+59420955 | Msa0129460:CDS |
GGCCAGAAGTATATCTATAC+TGG | 0.393179 | 1_3:+59420198 | Msa0129460:CDS |
ATCCAGTATAGATATACTTC+TGG | 0.402582 | 1_3:-59420200 | None:intergenic |
TGATACAGACCATACCTCTT+AGG | 0.407084 | 1_3:-59415988 | None:intergenic |
ATAGGCCAAGGACCATTTAC+AGG | 0.415805 | 1_3:-59417467 | None:intergenic |
GGCCGCGAATCCAATTGTTC+AGG | 0.416503 | 1_3:+59417392 | Msa0129460:CDS |
CGTATGCTCGACTAGGCATT+TGG | 0.426545 | 1_3:-59417493 | None:intergenic |
TACTCATAGCATAACCCATT+TGG | 0.431168 | 1_3:-59417166 | None:intergenic |
AGATCAGACCATCAAACTTT+GGG | 0.433353 | 1_3:+59419145 | Msa0129460:CDS |
GGGATGGAGATGTTGTAAAA+TGG | 0.435817 | 1_3:+59420930 | Msa0129460:CDS |
AAGATCAGACCATCAAACTT+TGG | 0.439366 | 1_3:+59419144 | Msa0129460:CDS |
TATGCTCGTTAGCTCTTCTT+GGG | 0.443104 | 1_3:+59420910 | Msa0129460:CDS |
GATGGGAGGGAATTAGTTGC+AGG | 0.457956 | 1_3:+59418199 | Msa0129460:CDS |
AATTTCAGTAACCGTGTTCG+TGG | 0.462360 | 1_3:+59419852 | Msa0129460:intron |
ATGTGTTTATGTATATGATT+TGG | 0.470295 | 1_3:+59420233 | Msa0129460:CDS |
ATCGTACACATTGTAAATGT+TGG | 0.472091 | 1_3:+59417875 | Msa0129460:CDS |
ATTTACCTGTAAATGGTCCT+TGG | 0.479935 | 1_3:+59417462 | Msa0129460:CDS |
CGGCCTGCCAGCATCTTCAC+CGG | 0.481898 | 1_3:-59417374 | None:intergenic |
CAGTCAGTGGCTACGTATAG+AGG | 0.482615 | 1_3:+59419951 | Msa0129460:CDS |
GCACTTTACGTTGACCAAAT+GGG | 0.482739 | 1_3:+59417152 | Msa0129460:CDS |
CGAATCCAATTGTTCAGGAC+GGG | 0.482995 | 1_3:+59417397 | Msa0129460:CDS |
ATCCTTGAAGATTCTAGCAC+TGG | 0.486362 | 1_3:+59417230 | Msa0129460:CDS |
TCCCCGGTGAAGATGCTGGC+AGG | 0.486810 | 1_3:+59417371 | Msa0129460:CDS |
CTCGTTAGCTCTTCTTGGGA+TGG | 0.489305 | 1_3:+59420914 | Msa0129460:CDS |
TGAATGGGATTACAGGTGGA+TGG | 0.490487 | 1_3:+59419887 | Msa0129460:CDS |
GTCCTGAACAATTGGATTCG+CGG | 0.491213 | 1_3:-59417394 | None:intergenic |
ATTATTTATGTACAAGATTG+TGG | 0.493007 | 1_3:-59421143 | None:intergenic |
ACTGGCCATCTTATTTACTC+TGG | 0.494750 | 1_3:+59418664 | Msa0129460:CDS |
GAAAGAGTTGCCTGTTTCCC+CGG | 0.495375 | 1_3:+59417355 | Msa0129460:CDS |
TATACAATGTGGACAAAGGT+TGG | 0.499477 | 1_3:+59417648 | Msa0129460:CDS |
CTGCTAGTACATGATGGGTC+TGG | 0.500073 | 1_3:+59417329 | Msa0129460:CDS |
TTACTAGATGGCTTTGATCA+GGG | 0.501289 | 1_3:-59417733 | None:intergenic |
CTCTGATATGGCAGCCTCGT+CGG | 0.501439 | 1_3:+59420967 | Msa0129460:CDS |
GGACGCTATTTCATTTCAAA+CGG | 0.501559 | 1_3:+59419119 | Msa0129460:CDS |
CATCAACTGCTAGTACATGA+TGG | 0.505267 | 1_3:+59417323 | Msa0129460:CDS |
CAAGAAGAGCTAACGAGCAT+AGG | 0.505730 | 1_3:-59420908 | None:intergenic |
CACCTGTAAGAGATTGTAGT+TGG | 0.509483 | 1_3:+59420873 | Msa0129460:CDS |
TGTCCCATCAAAACCCCTGC+CGG | 0.512728 | 1_3:-59419059 | None:intergenic |
GTAACCGTGTTCGTGGATAT+AGG | 0.517492 | 1_3:+59419859 | Msa0129460:intron |
CCAATTGTTCAGGACGGGGA+AGG | 0.517976 | 1_3:+59417402 | Msa0129460:CDS |
TGTTTCCCCGGTGAAGATGC+TGG | 0.519063 | 1_3:+59417367 | Msa0129460:CDS |
AATGCTAAAGACAAGCCGGC+AGG | 0.520946 | 1_3:+59419044 | Msa0129460:CDS |
TTTATTGATACCCGTGGAGA+TGG | 0.521044 | 1_3:+59419098 | Msa0129460:CDS |
TTTAGTGGTCACCTAAAAGC+TGG | 0.522377 | 1_3:-59420014 | None:intergenic |
CAATAAATGTAATGCCCTCA+AGG | 0.532155 | 1_3:-59419082 | None:intergenic |
AAGAGCATACCTGGTAACAT+TGG | 0.534358 | 1_3:-59419186 | None:intergenic |
GTTGTAAAATGGCAATCTGC+TGG | 0.535124 | 1_3:+59420941 | Msa0129460:CDS |
TGCTAAAGACAAGCCGGCAG+GGG | 0.535291 | 1_3:+59419046 | Msa0129460:CDS |
GACTCTAGTGATACTGAAGA+TGG | 0.540581 | 1_3:+59417200 | Msa0129460:CDS |
CAAGAGTGCGTAAGACTGAA+TGG | 0.543044 | 1_3:-59419974 | None:intergenic |
GATGATTCATTACAGGTGAG+TGG | 0.544157 | 1_3:+59420818 | Msa0129460:intron |
CGACTAGGCATTTGGTCGAT+AGG | 0.547791 | 1_3:-59417485 | None:intergenic |
TACTAGATGGCTTTGATCAG+GGG | 0.548826 | 1_3:-59417732 | None:intergenic |
GCAGGAGATCCACGATGGGT+TGG | 0.550911 | 1_3:+59418114 | Msa0129460:intron |
GGCCTGCCAGCATCTTCACC+GGG | 0.553632 | 1_3:-59417373 | None:intergenic |
AAGAAGAGCTAACGAGCATA+GGG | 0.554781 | 1_3:-59420907 | None:intergenic |
ATGCTAAAGACAAGCCGGCA+GGG | 0.560101 | 1_3:+59419045 | Msa0129460:CDS |
CACTTCCAGAGTAAATAAGA+TGG | 0.565103 | 1_3:-59418669 | None:intergenic |
TTTGCAGGATTGACAAACAC+AGG | 0.573696 | 1_3:+59417037 | Msa0129460:intron |
CTTAAATGCTAAAGACAAGC+CGG | 0.577168 | 1_3:+59419040 | Msa0129460:CDS |
ACATTTACAATGTGTACGAT+AGG | 0.581114 | 1_3:-59417872 | None:intergenic |
ATCAACTGCTAGTACATGAT+GGG | 0.581257 | 1_3:+59417324 | Msa0129460:CDS |
TTGTAAAATGGCAATCTGCT+GGG | 0.586915 | 1_3:+59420942 | Msa0129460:CDS |
ACAGACCATACCTCTTAGGA+TGG | 0.590479 | 1_3:-59415984 | None:intergenic |
GAAATAGCGTCCATCTCCAC+GGG | 0.592069 | 1_3:-59419108 | None:intergenic |
TGAAATAGCGTCCATCTCCA+CGG | 0.592795 | 1_3:-59419109 | None:intergenic |
ATGAGGTGTTGATTTCAACT+TGG | 0.593854 | 1_3:-59417303 | None:intergenic |
AAATGTCATCCAATGTTACC+AGG | 0.595793 | 1_3:+59419177 | Msa0129460:CDS |
AAAATATACAATGTGGACAA+AGG | 0.599948 | 1_3:+59417644 | Msa0129460:CDS |
AGCCTCGTCGGTTAAGAAGA+GGG | 0.600390 | 1_3:+59420979 | Msa0129460:CDS |
CAGCCTCGTCGGTTAAGAAG+AGG | 0.601348 | 1_3:+59420978 | Msa0129460:CDS |
GAATTAGTTGCAGGAACTAG+TGG | 0.606878 | 1_3:+59418208 | Msa0129460:CDS |
TTCTAACTAAGAGTTTGAGA+TGG | 0.609877 | 1_3:+59417687 | Msa0129460:CDS |
CTAACGAGCATAGGGTGGAA+AGG | 0.614104 | 1_3:-59420899 | None:intergenic |
TAGTACATGATGGGTCTGGA+AGG | 0.615748 | 1_3:+59417333 | Msa0129460:CDS |
GCGAATCCAATTGTTCAGGA+CGG | 0.617169 | 1_3:+59417396 | Msa0129460:CDS |
TTGCAGGATTGACAAACACA+GGG | 0.622055 | 1_3:+59417038 | Msa0129460:intron |
TGAGACACGTATGCTCGACT+AGG | 0.624491 | 1_3:-59417500 | None:intergenic |
AACTCCTATATCCACGAACA+CGG | 0.626589 | 1_3:-59419863 | None:intergenic |
GGCATTTGGTCGATAGGCCA+AGG | 0.629750 | 1_3:-59417479 | None:intergenic |
GAATCCAATTGTTCAGGACG+GGG | 0.630776 | 1_3:+59417398 | Msa0129460:CDS |
AGTTTCATCAGCAAAACATA+CGG | 0.631088 | 1_3:-59418644 | None:intergenic |
GTGTACGATAGGTGACATGC+TGG | 0.632627 | 1_3:-59417861 | None:intergenic |
TGCTATGAGTAGATTAGACG+TGG | 0.632706 | 1_3:+59417178 | Msa0129460:CDS |
AAGAGCTAACGAGCATAGGG+TGG | 0.635204 | 1_3:-59420904 | None:intergenic |
TCATGTACTAGCAGTTGATG+AGG | 0.637096 | 1_3:-59417320 | None:intergenic |
ATTACATTTATTGATACCCG+TGG | 0.637357 | 1_3:+59419092 | Msa0129460:CDS |
CAAAAGATGACAGCGATCAG+CGG | 0.644029 | 1_3:-59417432 | None:intergenic |
AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | 1_3:+59418687 | Msa0129460:CDS |
AATATGCAGGAGATCCACGA+TGG | 0.665955 | 1_3:+59418109 | Msa0129460:intron |
TCATCCTTGTGATCAGTCAG+TGG | 0.674274 | 1_3:+59419938 | Msa0129460:CDS |
GTAGCCACTGACTGATCACA+AGG | 0.680555 | 1_3:-59419942 | None:intergenic |
CATAACTATTCAAATCAACA+CGG | 0.685486 | 1_3:-59417114 | None:intergenic |
ATATGCAGGAGATCCACGAT+GGG | 0.686383 | 1_3:+59418110 | Msa0129460:intron |
AGAGTCACTAGCAAATGTGA+CGG | 0.704087 | 1_3:+59417910 | Msa0129460:CDS |
TACCCTCTTCTTAACCGACG+AGG | 0.713771 | 1_3:-59420981 | None:intergenic |
GCCTGCCAGCATCTTCACCG+GGG | 0.715871 | 1_3:-59417372 | None:intergenic |
TGCAGGATTGACAAACACAG+GGG | 0.738451 | 1_3:+59417039 | Msa0129460:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTAAATTAATTTATTTTTC+AGG | + | chr1_3:59417610-59417629 | Msa0129460:intron | 10.0% |
!!! | CTAAATTAATTTATTTTTCA+GGG | + | chr1_3:59417611-59417630 | Msa0129460:intron | 10.0% |
!! | AAGAAAAATAATTGATTAAA+AGG | - | chr1_3:59417785-59417804 | None:intergenic | 10.0% |
!! | AAATAAATTATAAAACTTGA+GGG | - | chr1_3:59420373-59420392 | None:intergenic | 10.0% |
!! | AAAATAAATTATAAAACTTG+AGG | - | chr1_3:59420374-59420393 | None:intergenic | 10.0% |
!! | AATAATCACATAGATTAAAT+GGG | - | chr1_3:59416143-59416162 | None:intergenic | 15.0% |
!! | TAATAATCACATAGATTAAA+TGG | - | chr1_3:59416144-59416163 | None:intergenic | 15.0% |
!!! | ACAATTTTTTCTTATCTATA+TGG | + | chr1_3:59416968-59416987 | Msa0129460:intron | 15.0% |
!! | CTAAATAGATGTAATATTTA+TGG | - | chr1_3:59418311-59418330 | None:intergenic | 15.0% |
!!! | AGATTTTATGTTTTTATCAT+CGG | + | chr1_3:59420281-59420300 | Msa0129460:intron | 15.0% |
!! | AAATAGTATAATCTATAACT+AGG | + | chr1_3:59420315-59420334 | Msa0129460:intron | 15.0% |
!! | AATAGTATAATCTATAACTA+GGG | + | chr1_3:59420316-59420335 | Msa0129460:intron | 15.0% |
!! | AATAAATTATAAAACTTGAG+GGG | - | chr1_3:59420372-59420391 | None:intergenic | 15.0% |
!! | TTGATAAATTATTCAATCAT+TGG | - | chr1_3:59420426-59420445 | None:intergenic | 15.0% |
!!! | AAAAGATGAAATTTAAGATT+TGG | + | chr1_3:59420480-59420499 | Msa0129460:intron | 15.0% |
!!! | TGTAATGTATTATTTTTAAG+CGG | + | chr1_3:59420720-59420739 | Msa0129460:intron | 15.0% |
!!! | GAATTTGATTCTGTAAATTT+TGG | - | chr1_3:59416074-59416093 | None:intergenic | 20.0% |
!!! | AAGTTAGTTAGTTTGTTATT+CGG | + | chr1_3:59416715-59416734 | Msa0129460:intron | 20.0% |
!! | ATATGATCTTGAAACAAATA+AGG | + | chr1_3:59418246-59418265 | Msa0129460:CDS | 20.0% |
!! | TAAATTATAGATTCAGACAA+TGG | - | chr1_3:59418350-59418369 | None:intergenic | 20.0% |
!! | TTGTCTGAATCTATAATTTA+TGG | + | chr1_3:59418350-59418369 | Msa0129460:intron | 20.0% |
!! | TCTAATGTACAAAATTGTTT+AGG | + | chr1_3:59419001-59419020 | Msa0129460:intron | 20.0% |
!! | TTCATATAATTCAACAGATA+TGG | - | chr1_3:59419227-59419246 | None:intergenic | 20.0% |
!! | TAAATTAGACGACTTATATT+AGG | + | chr1_3:59419431-59419450 | Msa0129460:intron | 20.0% |
!! | AATTATGTTGTAAAATTGTG+AGG | + | chr1_3:59419546-59419565 | Msa0129460:intron | 20.0% |
!!! | AAACTCTGTATTTTTCATTT+TGG | - | chr1_3:59419630-59419649 | None:intergenic | 20.0% |
!! | ACTGAAATTTAGAGAAAAAT+CGG | - | chr1_3:59419841-59419860 | None:intergenic | 20.0% |
!! | CTTGAGCATATTAAAATTAT+TGG | + | chr1_3:59420118-59420137 | Msa0129460:intron | 20.0% |
!! | ATGTGTTTATGTATATGATT+TGG | + | chr1_3:59420233-59420252 | Msa0129460:CDS | 20.0% |
!! | ATAGTATAATCTATAACTAG+GGG | + | chr1_3:59420317-59420336 | Msa0129460:intron | 20.0% |
!! | ATTATTTATGTACAAGATTG+TGG | - | chr1_3:59421146-59421165 | None:intergenic | 20.0% |
! | TGTGCAAATTGTTACAAAAA+GGG | - | chr1_3:59415918-59415937 | None:intergenic | 25.0% |
! | ATGTGCAAATTGTTACAAAA+AGG | - | chr1_3:59415919-59415938 | None:intergenic | 25.0% |
!!! | AATTTTTGGTTTGTCTGATA+TGG | - | chr1_3:59415964-59415983 | None:intergenic | 25.0% |
! | ATGCACAAATACATATTAAG+AGG | - | chr1_3:59416178-59416197 | None:intergenic | 25.0% |
!! | TTACAGAAAAGTACAAAAAC+AGG | - | chr1_3:59416429-59416448 | None:intergenic | 25.0% |
!!! | AATTTTATGCATTGAGTTGT+CGG | + | chr1_3:59416579-59416598 | Msa0129460:intron | 25.0% |
! | ATTCATAGTTTACTGATAAG+TGG | + | chr1_3:59416607-59416626 | Msa0129460:intron | 25.0% |
! | TTCATAGTTTACTGATAAGT+GGG | + | chr1_3:59416608-59416627 | Msa0129460:intron | 25.0% |
!!! | AGTTAGTTAGTTTGTTATTC+GGG | + | chr1_3:59416716-59416735 | Msa0129460:intron | 25.0% |
!!! | GAATTGGTTAGTTTGTTATT+TGG | + | chr1_3:59416760-59416779 | Msa0129460:intron | 25.0% |
!!! | TATCTTTTTACGTTTTAACC+AGG | + | chr1_3:59416934-59416953 | Msa0129460:intron | 25.0% |
! | AAATTGTTAAAACAACAACC+TGG | - | chr1_3:59416955-59416974 | None:intergenic | 25.0% |
! | AAAATGTATGACGAAACAAT+AGG | - | chr1_3:59417015-59417034 | None:intergenic | 25.0% |
! | CATAACTATTCAAATCAACA+CGG | - | chr1_3:59417117-59417136 | None:intergenic | 25.0% |
! | AAACTATAGATGCATACATA+GGG | - | chr1_3:59417586-59417605 | None:intergenic | 25.0% |
! | AAAACTATAGATGCATACAT+AGG | - | chr1_3:59417587-59417606 | None:intergenic | 25.0% |
!!! | CCACATTGTATATTTTTATG+TGG | - | chr1_3:59417640-59417659 | None:intergenic | 25.0% |
! | CCACATAAAAATATACAATG+TGG | + | chr1_3:59417637-59417656 | Msa0129460:CDS | 25.0% |
! | AAAATATACAATGTGGACAA+AGG | + | chr1_3:59417644-59417663 | Msa0129460:CDS | 25.0% |
!!! | AACTGTCTTAGTTTTTCTTA+TGG | + | chr1_3:59417809-59417828 | Msa0129460:intron | 25.0% |
! | TTTCAGTTCTTATAATATGC+AGG | + | chr1_3:59418096-59418115 | Msa0129460:intron | 25.0% |
!! | CTATTTAGCTTCATATGATT+TGG | + | chr1_3:59418323-59418342 | Msa0129460:intron | 25.0% |
!! | TGGAGAAATCATTTTCATAT+TGG | + | chr1_3:59418533-59418552 | Msa0129460:intron | 25.0% |
!! | GGAGAAATCATTTTCATATT+GGG | + | chr1_3:59418534-59418553 | Msa0129460:intron | 25.0% |
!! | AAATCATTTTCATATTGGGA+TGG | + | chr1_3:59418538-59418557 | Msa0129460:intron | 25.0% |
!! | AAAGTATTTACACATACCAT+AGG | + | chr1_3:59418575-59418594 | Msa0129460:intron | 25.0% |
!! | ACCATAGGTTTTCTAAATTT+TGG | + | chr1_3:59418590-59418609 | Msa0129460:intron | 25.0% |
! | ACCAAAATTTAGAAAACCTA+TGG | - | chr1_3:59418594-59418613 | None:intergenic | 25.0% |
! | TCTATGTGAAATCAAAAGTT+GGG | - | chr1_3:59418779-59418798 | None:intergenic | 25.0% |
! | TTCTATGTGAAATCAAAAGT+TGG | - | chr1_3:59418780-59418799 | None:intergenic | 25.0% |
! | CAGAAAGTTTATATTGTAGT+TGG | + | chr1_3:59418934-59418953 | Msa0129460:intron | 25.0% |
! | GTATACTTGTGAATTATCTA+TGG | + | chr1_3:59419573-59419592 | Msa0129460:intron | 25.0% |
!! | ATATAGAATTAGCTTAGTCT+CGG | - | chr1_3:59419786-59419805 | None:intergenic | 25.0% |
! | GAAAATGAAGAATGATGAAA+AGG | - | chr1_3:59420049-59420068 | None:intergenic | 25.0% |
! | TCCAAATATGAAAATCAAAG+GGG | - | chr1_3:59420083-59420102 | None:intergenic | 25.0% |
! | GTCCAAATATGAAAATCAAA+GGG | - | chr1_3:59420084-59420103 | None:intergenic | 25.0% |
! | TGTCCAAATATGAAAATCAA+AGG | - | chr1_3:59420085-59420104 | None:intergenic | 25.0% |
! | AATTTGAAGAAAACAACATC+AGG | - | chr1_3:59420169-59420188 | None:intergenic | 25.0% |
! | TAGTATAATCTATAACTAGG+GGG | + | chr1_3:59420318-59420337 | Msa0129460:intron | 25.0% |
!! | CTAATATTTTCATGCAGAAA+TGG | - | chr1_3:59420450-59420469 | None:intergenic | 25.0% |
!! | ATGAAATTTAAGATTTGGAG+TGG | + | chr1_3:59420485-59420504 | Msa0129460:intron | 25.0% |
! | GAGATACTGCTTATAAAATT+CGG | - | chr1_3:59420689-59420708 | None:intergenic | 25.0% |
!!! | CAAGGCATTGTATTTTTATT+GGG | - | chr1_3:59420782-59420801 | None:intergenic | 25.0% |
!! | AAACTTTGATGATTCATTAC+AGG | + | chr1_3:59420811-59420830 | Msa0129460:intron | 25.0% |
! | GTTGATATTGAAGTTGTATA+TGG | + | chr1_3:59421089-59421108 | Msa0129460:three_prime_UTR | 25.0% |
! | ATATGGTGTTTGACATAATA+AGG | + | chr1_3:59421106-59421125 | Msa0129460:three_prime_UTR | 25.0% |
AAAGTGAAAGTCAACTGAAA+GGG | - | chr1_3:59416108-59416127 | None:intergenic | 30.0% | |
TAAAGTGAAAGTCAACTGAA+AGG | - | chr1_3:59416109-59416128 | None:intergenic | 30.0% | |
AACAGTGACTAAAAATTCAC+AGG | - | chr1_3:59416240-59416259 | None:intergenic | 30.0% | |
ATGATGTTTGTCAAATTCCT+TGG | + | chr1_3:59416394-59416413 | Msa0129460:intron | 30.0% | |
AAGTACAAAAACAGGTTCAT+GGG | - | chr1_3:59416421-59416440 | None:intergenic | 30.0% | |
AAAGTACAAAAACAGGTTCA+TGG | - | chr1_3:59416422-59416441 | None:intergenic | 30.0% | |
ATACTAGTGTATCAATATGG+GGG | - | chr1_3:59416521-59416540 | None:intergenic | 30.0% | |
CATACTAGTGTATCAATATG+GGG | - | chr1_3:59416522-59416541 | None:intergenic | 30.0% | |
GCATACTAGTGTATCAATAT+GGG | - | chr1_3:59416523-59416542 | None:intergenic | 30.0% | |
TGCATACTAGTGTATCAATA+TGG | - | chr1_3:59416524-59416543 | None:intergenic | 30.0% | |
TTGATACACTAGTATGCATA+TGG | + | chr1_3:59416526-59416545 | Msa0129460:intron | 30.0% | |
TATGCATATGGTATTCACTA+GGG | + | chr1_3:59416538-59416557 | Msa0129460:intron | 30.0% | |
!! | ATTTTATGCATTGAGTTGTC+GGG | + | chr1_3:59416580-59416599 | Msa0129460:intron | 30.0% |
!!! | GTTTTGAGTTGTTAGAGAAT+TGG | + | chr1_3:59416744-59416763 | Msa0129460:intron | 30.0% |
AAACACATGATATTTGATCC+CGG | - | chr1_3:59416899-59416918 | None:intergenic | 30.0% | |
!!! | CGTCATACATTTTATTTTGC+AGG | + | chr1_3:59417022-59417041 | Msa0129460:intron | 30.0% |
TTTAAATAGCTCAGATGCTT+TGG | + | chr1_3:59417076-59417095 | Msa0129460:five_prime_UTR | 30.0% | |
ATAGTTATGTACGCTATATC+TGG | + | chr1_3:59417128-59417147 | Msa0129460:exon | 30.0% | |
! | TAGCACTGGAAAATCTAAAA+AGG | + | chr1_3:59417244-59417263 | Msa0129460:CDS | 30.0% |
AGCAGATATTTACCTGTAAA+TGG | + | chr1_3:59417455-59417474 | Msa0129460:CDS | 30.0% | |
TAAAAGTGAAAATGCTTACC+TGG | - | chr1_3:59417562-59417581 | None:intergenic | 30.0% | |
TTCTAACTAAGAGTTTGAGA+TGG | + | chr1_3:59417687-59417706 | Msa0129460:CDS | 30.0% | |
CATTTGCATTCTTCAATTTC+AGG | + | chr1_3:59417832-59417851 | Msa0129460:intron | 30.0% | |
ACATTTACAATGTGTACGAT+AGG | - | chr1_3:59417875-59417894 | None:intergenic | 30.0% | |
ATCGTACACATTGTAAATGT+TGG | + | chr1_3:59417875-59417894 | Msa0129460:CDS | 30.0% | |
CCAAAGATCATAATTCAATG+TGG | - | chr1_3:59417939-59417958 | None:intergenic | 30.0% | |
CCACATTGAATTATGATCTT+TGG | + | chr1_3:59417936-59417955 | Msa0129460:intron | 30.0% | |
TCAGAGGAATAGATACAAAT+TGG | + | chr1_3:59417998-59418017 | Msa0129460:intron | 30.0% | |
!!! | TTTTCTAAGATGTCTGTAAC+TGG | + | chr1_3:59418022-59418041 | Msa0129460:intron | 30.0% |
ATGAAAAGAACACCATCAAA+CGG | - | chr1_3:59418063-59418082 | None:intergenic | 30.0% | |
! | GATTTTTCATCAAATGACGA+TGG | + | chr1_3:59418136-59418155 | Msa0129460:CDS | 30.0% |
! | TCTGTGAAATTTTCAACAGA+TGG | + | chr1_3:59418181-59418200 | Msa0129460:CDS | 30.0% |
! | CTGTGAAATTTTCAACAGAT+GGG | + | chr1_3:59418182-59418201 | Msa0129460:CDS | 30.0% |
GACATTGTCAATAGATTAAG+TGG | - | chr1_3:59418449-59418468 | None:intergenic | 30.0% | |
AGTTTCATCAGCAAAACATA+CGG | - | chr1_3:59418647-59418666 | None:intergenic | 30.0% | |
AGGTATGTTCTACAATAAGA+TGG | + | chr1_3:59418707-59418726 | Msa0129460:intron | 30.0% | |
ATCTCATACTTATATCGTCA+AGG | + | chr1_3:59418829-59418848 | Msa0129460:intron | 30.0% | |
TGTACAAAATTGTTTAGGTC+TGG | + | chr1_3:59419006-59419025 | Msa0129460:intron | 30.0% | |
GTACAAAATTGTTTAGGTCT+GGG | + | chr1_3:59419007-59419026 | Msa0129460:intron | 30.0% | |
ATTACATTTATTGATACCCG+TGG | + | chr1_3:59419092-59419111 | Msa0129460:CDS | 30.0% | |
TGGGAAAGATAAAATTCATG+TGG | + | chr1_3:59419303-59419322 | Msa0129460:intron | 30.0% | |
AGTAAAATACACCTTGTTCA+TGG | + | chr1_3:59419358-59419377 | Msa0129460:intron | 30.0% | |
ACTCTAAATTTCCATGAACA+AGG | - | chr1_3:59419372-59419391 | None:intergenic | 30.0% | |
!! | AACTCTAGTTAACTTGTATC+TGG | + | chr1_3:59419406-59419425 | Msa0129460:intron | 30.0% |
CTAATGCATAATAGAGATAC+AGG | + | chr1_3:59419495-59419514 | Msa0129460:intron | 30.0% | |
!!! | TGGATATAGGAGTTTTGAAT+GGG | + | chr1_3:59419872-59419891 | Msa0129460:CDS | 30.0% |
TGAAGAATGATGAAAAGGTA+AGG | - | chr1_3:59420044-59420063 | None:intergenic | 30.0% | |
!! | TCCCCTTTGATTTTCATATT+TGG | + | chr1_3:59420079-59420098 | Msa0129460:intron | 30.0% |
TTTCTTCAAATTTACAGCAC+TGG | + | chr1_3:59420177-59420196 | Msa0129460:intron | 30.0% | |
ATCCAGTATAGATATACTTC+TGG | - | chr1_3:59420203-59420222 | None:intergenic | 30.0% | |
!! | TTTAGGCATTTTGCTATGTT+CGG | - | chr1_3:59420540-59420559 | None:intergenic | 30.0% |
!! | TAGTAGTTTGCTGATTGTTT+AGG | - | chr1_3:59420557-59420576 | None:intergenic | 30.0% |
!!! | GAGTATTAGAGTTTTGTTCA+TGG | + | chr1_3:59420622-59420641 | Msa0129460:intron | 30.0% |
TAAAATTCGGTTATGAACAG+CGG | - | chr1_3:59420676-59420695 | None:intergenic | 30.0% | |
!!! | GCAAGGCATTGTATTTTTAT+TGG | - | chr1_3:59420783-59420802 | None:intergenic | 30.0% |
TCAAAGTTTCTTATTGAGCA+AGG | - | chr1_3:59420800-59420819 | None:intergenic | 30.0% | |
AATCTCTTACAGGTGATTTA+TGG | - | chr1_3:59420868-59420887 | None:intergenic | 30.0% | |
! | ACTGATTTAACTGACATCAT+AGG | - | chr1_3:59421033-59421052 | None:intergenic | 30.0% |
! | AATCTTCTGCTTTGGGTAAT+TGG | - | chr1_3:59415881-59415900 | None:intergenic | 35.0% |
TTCATGGAATCTTCTGCTTT+GGG | - | chr1_3:59415888-59415907 | None:intergenic | 35.0% | |
CAAAAAGGGAAACATGTTCA+TGG | - | chr1_3:59415904-59415923 | None:intergenic | 35.0% | |
ACCAAAAATTCCATCCTAAG+AGG | + | chr1_3:59415974-59415993 | Msa0129460:five_prime_UTR | 35.0% | |
! | ACCTCTTAGGATGGAATTTT+TGG | - | chr1_3:59415978-59415997 | None:intergenic | 35.0% |
AAATTCCATCCTAAGAGGTA+TGG | + | chr1_3:59415979-59415998 | Msa0129460:intron | 35.0% | |
AAGTGAAAGTCAACTGAAAG+GGG | - | chr1_3:59416107-59416126 | None:intergenic | 35.0% | |
!! | TGTTGATGATGTTGTGGAAA+GGG | + | chr1_3:59416256-59416275 | Msa0129460:intron | 35.0% |
AAACAACGACTGAAAAGAAG+TGG | + | chr1_3:59416331-59416350 | Msa0129460:intron | 35.0% | |
AGAAAACCATCCCCATTATA+AGG | + | chr1_3:59416466-59416485 | Msa0129460:intron | 35.0% | |
TGGTTCTTTCGCCTTATAAT+GGG | - | chr1_3:59416480-59416499 | None:intergenic | 35.0% | |
GTATGCATATGGTATTCACT+AGG | + | chr1_3:59416537-59416556 | Msa0129460:intron | 35.0% | |
TAGTTTACTGATAAGTGGGT+AGG | + | chr1_3:59416612-59416631 | Msa0129460:intron | 35.0% | |
! | TAGAGAGTATGTGCATAAAC+AGG | + | chr1_3:59416789-59416808 | Msa0129460:intron | 35.0% |
TGATATTTGATCCCGGATTA+CGG | - | chr1_3:59416892-59416911 | None:intergenic | 35.0% | |
ATCAACACGGAAAAATGTTG+CGG | - | chr1_3:59417104-59417123 | None:intergenic | 35.0% | |
TACTCATAGCATAACCCATT+TGG | - | chr1_3:59417169-59417188 | None:intergenic | 35.0% | |
!! | ATGAGGTGTTGATTTCAACT+TGG | - | chr1_3:59417306-59417325 | None:intergenic | 35.0% |
ATCAACTGCTAGTACATGAT+GGG | + | chr1_3:59417324-59417343 | Msa0129460:CDS | 35.0% | |
ATTTACCTGTAAATGGTCCT+TGG | + | chr1_3:59417462-59417481 | Msa0129460:CDS | 35.0% | |
!!! | ATGGTTCACTTTTTGTTGCT+GGG | + | chr1_3:59417534-59417553 | Msa0129460:CDS | 35.0% |
TATACAATGTGGACAAAGGT+TGG | + | chr1_3:59417648-59417667 | Msa0129460:CDS | 35.0% | |
!! | TTACTAGATGGCTTTGATCA+GGG | - | chr1_3:59417736-59417755 | None:intergenic | 35.0% |
AAAGCCATCTAGTAAGTAAC+TGG | + | chr1_3:59417741-59417760 | Msa0129460:intron | 35.0% | |
GTTTCCAGTTACTTACTAGA+TGG | - | chr1_3:59417748-59417767 | None:intergenic | 35.0% | |
!! | GTTTTGAATGCTATGATCAG+AGG | + | chr1_3:59417982-59418001 | Msa0129460:intron | 35.0% |
! | TTTTCATCAAATGACGATGG+AGG | + | chr1_3:59418139-59418158 | Msa0129460:CDS | 35.0% |
! | TGAAATTTTCAACAGATGGG+AGG | + | chr1_3:59418185-59418204 | Msa0129460:CDS | 35.0% |
! | GAAATTTTCAACAGATGGGA+GGG | + | chr1_3:59418186-59418205 | Msa0129460:CDS | 35.0% |
ATTTATGGTGCAGTTTGAAG+CGG | + | chr1_3:59418365-59418384 | Msa0129460:intron | 35.0% | |
! | AGTTTGCTTAGCTGCATAAT+AGG | + | chr1_3:59418416-59418435 | Msa0129460:intron | 35.0% |
!! | TTGGTTTTCATTTTACGTGC+AGG | + | chr1_3:59418609-59418628 | Msa0129460:intron | 35.0% |
! | GTATGTTTTGCTGATGAAAC+TGG | + | chr1_3:59418646-59418665 | Msa0129460:CDS | 35.0% |
CACTTCCAGAGTAAATAAGA+TGG | - | chr1_3:59418672-59418691 | None:intergenic | 35.0% | |
AAGTGATGATAGTTTCTGCA+AGG | + | chr1_3:59418687-59418706 | Msa0129460:CDS | 35.0% | |
CAAAAGTTGGGATACTCAAA+AGG | - | chr1_3:59418767-59418786 | None:intergenic | 35.0% | |
! | GTAATGAACACCTTTTACAC+AGG | + | chr1_3:59418800-59418819 | Msa0129460:intron | 35.0% |
AGATTGAACTCCTGTGTAAA+AGG | - | chr1_3:59418813-59418832 | None:intergenic | 35.0% | |
!! | ATTGTTTTGTTCTTTCCCTC+TGG | + | chr1_3:59418958-59418977 | Msa0129460:intron | 35.0% |
CTTAAATGCTAAAGACAAGC+CGG | + | chr1_3:59419040-59419059 | Msa0129460:CDS | 35.0% | |
CAATAAATGTAATGCCCTCA+AGG | - | chr1_3:59419085-59419104 | None:intergenic | 35.0% | |
! | GGACGCTATTTCATTTCAAA+CGG | + | chr1_3:59419119-59419138 | Msa0129460:CDS | 35.0% |
AAGATCAGACCATCAAACTT+TGG | + | chr1_3:59419144-59419163 | Msa0129460:CDS | 35.0% | |
AGATCAGACCATCAAACTTT+GGG | + | chr1_3:59419145-59419164 | Msa0129460:CDS | 35.0% | |
AAATGTCATCCAATGTTACC+AGG | + | chr1_3:59419177-59419196 | Msa0129460:CDS | 35.0% | |
CAACAGATATGGATACCAAA+AGG | - | chr1_3:59419216-59419235 | None:intergenic | 35.0% | |
ACCTTATAGAAATGTGTGCT+CGG | - | chr1_3:59419526-59419545 | None:intergenic | 35.0% | |
!!! | GTGGATATAGGAGTTTTGAA+TGG | + | chr1_3:59419871-59419890 | Msa0129460:CDS | 35.0% |
! | TGATTCAAGTCTTTTGCTTG+TGG | - | chr1_3:59419921-59419940 | None:intergenic | 35.0% |
TTGTAAAATGGCAATCTGCT+GGG | + | chr1_3:59420942-59420961 | Msa0129460:CDS | 35.0% | |
GTTCATGGAATCTTCTGCTT+TGG | - | chr1_3:59415889-59415908 | None:intergenic | 40.0% | |
TGATACAGACCATACCTCTT+AGG | - | chr1_3:59415991-59416010 | None:intergenic | 40.0% | |
!! | AGTCACTGTTGATGATGTTG+TGG | + | chr1_3:59416250-59416269 | Msa0129460:intron | 40.0% |
!! | CTGTTGATGATGTTGTGGAA+AGG | + | chr1_3:59416255-59416274 | Msa0129460:intron | 40.0% |
! | TGTTGTGGAAAGGGTTTTTG+AGG | + | chr1_3:59416265-59416284 | Msa0129460:intron | 40.0% |
!!! | AAGGGTTTTTGAGGTCATAG+AGG | + | chr1_3:59416274-59416293 | Msa0129460:intron | 40.0% |
!!! | GTTTTTGAGGTCATAGAGGT+GGG | + | chr1_3:59416278-59416297 | Msa0129460:intron | 40.0% |
!!! | TTTTTGAGGTCATAGAGGTG+GGG | + | chr1_3:59416279-59416298 | Msa0129460:intron | 40.0% |
GGTTCTTTCGCCTTATAATG+GGG | - | chr1_3:59416479-59416498 | None:intergenic | 40.0% | |
GTGGTTCTTTCGCCTTATAA+TGG | - | chr1_3:59416481-59416500 | None:intergenic | 40.0% | |
TGCATAAACAGGAGAACACA+AGG | + | chr1_3:59416800-59416819 | Msa0129460:intron | 40.0% | |
AGACACAATTGACCGTAATC+CGG | + | chr1_3:59416877-59416896 | Msa0129460:intron | 40.0% | |
TTTGCAGGATTGACAAACAC+AGG | + | chr1_3:59417037-59417056 | Msa0129460:intron | 40.0% | |
TTGCAGGATTGACAAACACA+GGG | + | chr1_3:59417038-59417057 | Msa0129460:intron | 40.0% | |
TGCACTTTACGTTGACCAAA+TGG | + | chr1_3:59417151-59417170 | Msa0129460:CDS | 40.0% | |
GCACTTTACGTTGACCAAAT+GGG | + | chr1_3:59417152-59417171 | Msa0129460:CDS | 40.0% | |
TGCTATGAGTAGATTAGACG+TGG | + | chr1_3:59417178-59417197 | Msa0129460:CDS | 40.0% | |
GACTCTAGTGATACTGAAGA+TGG | + | chr1_3:59417200-59417219 | Msa0129460:CDS | 40.0% | |
ATCCTTGAAGATTCTAGCAC+TGG | + | chr1_3:59417230-59417249 | Msa0129460:CDS | 40.0% | |
TTCCAGTGCTAGAATCTTCA+AGG | - | chr1_3:59417235-59417254 | None:intergenic | 40.0% | |
! | TCATGTACTAGCAGTTGATG+AGG | - | chr1_3:59417323-59417342 | None:intergenic | 40.0% |
CATCAACTGCTAGTACATGA+TGG | + | chr1_3:59417323-59417342 | Msa0129460:CDS | 40.0% | |
!!! | GATGGTTCACTTTTTGTTGC+TGG | + | chr1_3:59417533-59417552 | Msa0129460:CDS | 40.0% |
!! | TACTAGATGGCTTTGATCAG+GGG | - | chr1_3:59417735-59417754 | None:intergenic | 40.0% |
!! | CTTACTAGATGGCTTTGATC+AGG | - | chr1_3:59417737-59417756 | None:intergenic | 40.0% |
AGAGTCACTAGCAAATGTGA+CGG | + | chr1_3:59417910-59417929 | Msa0129460:CDS | 40.0% | |
CTGTAACTGGTGTATGTACA+AGG | + | chr1_3:59418035-59418054 | Msa0129460:intron | 40.0% | |
ATGTACAAGGTTCCGTTTGA+TGG | + | chr1_3:59418048-59418067 | Msa0129460:intron | 40.0% | |
ATGAAAAATCCAACCCATCG+TGG | - | chr1_3:59418126-59418145 | None:intergenic | 40.0% | |
GAATTAGTTGCAGGAACTAG+TGG | + | chr1_3:59418208-59418227 | Msa0129460:CDS | 40.0% | |
! | TTTATGGTGCAGTTTGAAGC+GGG | + | chr1_3:59418366-59418385 | Msa0129460:intron | 40.0% |
! | CATATTGGGATGGCTCTATA+TGG | + | chr1_3:59418548-59418567 | Msa0129460:intron | 40.0% |
! | ACTGGCCATCTTATTTACTC+TGG | + | chr1_3:59418664-59418683 | Msa0129460:CDS | 40.0% |
AGTTGGGATACTCAAAAGGA+GGG | - | chr1_3:59418763-59418782 | None:intergenic | 40.0% | |
AAGTTGGGATACTCAAAAGG+AGG | - | chr1_3:59418764-59418783 | None:intergenic | 40.0% | |
TTTATTGATACCCGTGGAGA+TGG | + | chr1_3:59419098-59419117 | Msa0129460:CDS | 40.0% | |
ACGTATGTCCCAAAGTTTGA+TGG | - | chr1_3:59419156-59419175 | None:intergenic | 40.0% | |
! | AAGAGCATACCTGGTAACAT+TGG | - | chr1_3:59419189-59419208 | None:intergenic | 40.0% |
! | AAAGGCTAAAAGAGCATACC+TGG | - | chr1_3:59419198-59419217 | None:intergenic | 40.0% |
!! | GGTATGCTCTTTTAGCCTTT+TGG | + | chr1_3:59419198-59419217 | Msa0129460:intron | 40.0% |
AACCATAAGTCTGTGACTGA+TGG | + | chr1_3:59419457-59419476 | Msa0129460:intron | 40.0% | |
ACCATAAGTCTGTGACTGAT+GGG | + | chr1_3:59419458-59419477 | Msa0129460:intron | 40.0% | |
TCCGAGCACACATTTCTATA+AGG | + | chr1_3:59419522-59419541 | Msa0129460:intron | 40.0% | |
GACACAGAATCATCGTTGAT+TGG | - | chr1_3:59419698-59419717 | None:intergenic | 40.0% | |
AGGAACAGACAACATTAGCT+AGG | - | chr1_3:59419761-59419780 | None:intergenic | 40.0% | |
! | GAATTAGCTTAGTCTCGGAT+AGG | - | chr1_3:59419781-59419800 | None:intergenic | 40.0% |
AATTTCAGTAACCGTGTTCG+TGG | + | chr1_3:59419852-59419871 | Msa0129460:intron | 40.0% | |
AACTCCTATATCCACGAACA+CGG | - | chr1_3:59419866-59419885 | None:intergenic | 40.0% | |
!!! | GGAGTTTTGAATGGGATTAC+AGG | + | chr1_3:59419880-59419899 | Msa0129460:CDS | 40.0% |
!! | GTTTTGAATGGGATTACAGG+TGG | + | chr1_3:59419883-59419902 | Msa0129460:CDS | 40.0% |
! | TTCAAGTCTTTTGCTTGTGG+CGG | - | chr1_3:59419918-59419937 | None:intergenic | 40.0% |
!! | GCTTTTTCTCTCCAGCTTTT+AGG | + | chr1_3:59420003-59420022 | Msa0129460:CDS | 40.0% |
TTTAGTGGTCACCTAAAAGC+TGG | - | chr1_3:59420017-59420036 | None:intergenic | 40.0% | |
!! | CTTTTAGGTGACCACTAAAC+TGG | + | chr1_3:59420018-59420037 | Msa0129460:intron | 40.0% |
AAAAGGTAAGGCCAGTTTAG+TGG | - | chr1_3:59420032-59420051 | None:intergenic | 40.0% | |
! | GGCCAGAAGTATATCTATAC+TGG | + | chr1_3:59420198-59420217 | Msa0129460:CDS | 40.0% |
AATCTATAACTAGGGGGAAG+AGG | + | chr1_3:59420324-59420343 | Msa0129460:intron | 40.0% | |
ATCTATAACTAGGGGGAAGA+GGG | + | chr1_3:59420325-59420344 | Msa0129460:intron | 40.0% | |
TCTCCTTGAACTTTGATTCC+TGG | + | chr1_3:59420645-59420664 | Msa0129460:intron | 40.0% | |
GATGATTCATTACAGGTGAG+TGG | + | chr1_3:59420818-59420837 | Msa0129460:intron | 40.0% | |
CACCTGTAAGAGATTGTAGT+TGG | + | chr1_3:59420873-59420892 | Msa0129460:CDS | 40.0% | |
TGCCAACTACAATCTCTTAC+AGG | - | chr1_3:59420878-59420897 | None:intergenic | 40.0% | |
AAGAAGAGCTAACGAGCATA+GGG | - | chr1_3:59420910-59420929 | None:intergenic | 40.0% | |
! | TATGCTCGTTAGCTCTTCTT+GGG | + | chr1_3:59420910-59420929 | Msa0129460:CDS | 40.0% |
GGGATGGAGATGTTGTAAAA+TGG | + | chr1_3:59420930-59420949 | Msa0129460:CDS | 40.0% | |
GTTGTAAAATGGCAATCTGC+TGG | + | chr1_3:59420941-59420960 | Msa0129460:CDS | 40.0% | |
ACAGACCATACCTCTTAGGA+TGG | - | chr1_3:59415987-59416006 | None:intergenic | 45.0% | |
!!! | GGTTTTTGAGGTCATAGAGG+TGG | + | chr1_3:59416277-59416296 | Msa0129460:intron | 45.0% |
ACGACTGAAAAGAAGTGGCT+TGG | + | chr1_3:59416336-59416355 | Msa0129460:intron | 45.0% | |
CGACTGAAAAGAAGTGGCTT+GGG | + | chr1_3:59416337-59416356 | Msa0129460:intron | 45.0% | |
AAAACAGGTTCATGGGACCA+AGG | - | chr1_3:59416414-59416433 | None:intergenic | 45.0% | |
! | CTTTCGCCTTATAATGGGGA+TGG | - | chr1_3:59416475-59416494 | None:intergenic | 45.0% |
!! | AGTTTGTTGGGCTTCAACTG+CGG | + | chr1_3:59416642-59416661 | Msa0129460:intron | 45.0% |
GACACAATTGACCGTAATCC+GGG | + | chr1_3:59416878-59416897 | Msa0129460:intron | 45.0% | |
TGCAGGATTGACAAACACAG+GGG | + | chr1_3:59417039-59417058 | Msa0129460:intron | 45.0% | |
!! | TAGTACATGATGGGTCTGGA+AGG | + | chr1_3:59417333-59417352 | Msa0129460:CDS | 45.0% |
GTCCTGAACAATTGGATTCG+CGG | - | chr1_3:59417397-59417416 | None:intergenic | 45.0% | |
GCGAATCCAATTGTTCAGGA+CGG | + | chr1_3:59417396-59417415 | Msa0129460:CDS | 45.0% | |
CGAATCCAATTGTTCAGGAC+GGG | + | chr1_3:59417397-59417416 | Msa0129460:CDS | 45.0% | |
GAATCCAATTGTTCAGGACG+GGG | + | chr1_3:59417398-59417417 | Msa0129460:CDS | 45.0% | |
CAAAAGATGACAGCGATCAG+CGG | - | chr1_3:59417435-59417454 | None:intergenic | 45.0% | |
ATAGGCCAAGGACCATTTAC+AGG | - | chr1_3:59417470-59417489 | None:intergenic | 45.0% | |
! | GTGTCTCAGTTTTCAGCTGA+TGG | + | chr1_3:59417515-59417534 | Msa0129460:CDS | 45.0% |
! | ACTTTTTGTTGCTGGGTTCC+AGG | + | chr1_3:59417541-59417560 | Msa0129460:CDS | 45.0% |
AATATGCAGGAGATCCACGA+TGG | + | chr1_3:59418109-59418128 | Msa0129460:intron | 45.0% | |
ATATGCAGGAGATCCACGAT+GGG | + | chr1_3:59418110-59418129 | Msa0129460:intron | 45.0% | |
! | GACGATGGAGGATACTCTTT+TGG | + | chr1_3:59418151-59418170 | Msa0129460:CDS | 45.0% |
!! | GCTTCGAATTTTAGCGCACA+CGG | + | chr1_3:59418273-59418292 | Msa0129460:CDS | 45.0% |
!! | GTTTTGATGGGACACCTTGA+GGG | + | chr1_3:59419068-59419087 | Msa0129460:CDS | 45.0% |
TGAAATAGCGTCCATCTCCA+CGG | - | chr1_3:59419112-59419131 | None:intergenic | 45.0% | |
ACCCATCAGTCACAGACTTA+TGG | - | chr1_3:59419462-59419481 | None:intergenic | 45.0% | |
! | AAGTCTGTGACTGATGGGTA+TGG | + | chr1_3:59419463-59419482 | Msa0129460:intron | 45.0% |
TTTGTGTCAGCTTGTCTGTC+TGG | + | chr1_3:59419720-59419739 | Msa0129460:intron | 45.0% | |
GTAACCGTGTTCGTGGATAT+AGG | + | chr1_3:59419859-59419878 | Msa0129460:intron | 45.0% | |
TGAATGGGATTACAGGTGGA+TGG | + | chr1_3:59419887-59419906 | Msa0129460:CDS | 45.0% | |
! | TCAAGTCTTTTGCTTGTGGC+GGG | - | chr1_3:59419917-59419936 | None:intergenic | 45.0% |
TCATCCTTGTGATCAGTCAG+TGG | + | chr1_3:59419938-59419957 | Msa0129460:CDS | 45.0% | |
! | CAAGAGTGCGTAAGACTGAA+TGG | - | chr1_3:59419977-59419996 | None:intergenic | 45.0% |
AAGCTGGAGAGAAAAAGCAG+CGG | - | chr1_3:59420001-59420020 | None:intergenic | 45.0% | |
AGGCCAGGAATCAAAGTTCA+AGG | - | chr1_3:59420651-59420670 | None:intergenic | 45.0% | |
CAAGAAGAGCTAACGAGCAT+AGG | - | chr1_3:59420911-59420930 | None:intergenic | 45.0% | |
! | CTATGCTCGTTAGCTCTTCT+TGG | + | chr1_3:59420909-59420928 | Msa0129460:CDS | 45.0% |
!!! | TAATTTATTTATCATTTTTA+TGG | + | chr1_3:59418513-59418532 | Msa0129460:intron | 5.0% |
GGAGCTTCGTAGAACAAGTG+TGG | - | chr1_3:59416500-59416519 | None:intergenic | 50.0% | |
! | GTAGGTCGCTCGAGTTTGTT+GGG | + | chr1_3:59416630-59416649 | Msa0129460:intron | 50.0% |
! | GTTTGTTGGGCTTCAACTGC+GGG | + | chr1_3:59416643-59416662 | Msa0129460:intron | 50.0% |
!! | CTGCTAGTACATGATGGGTC+TGG | + | chr1_3:59417329-59417348 | Msa0129460:CDS | 50.0% |
GAAAGAGTTGCCTGTTTCCC+CGG | + | chr1_3:59417355-59417374 | Msa0129460:CDS | 50.0% | |
CGACTAGGCATTTGGTCGAT+AGG | - | chr1_3:59417488-59417507 | None:intergenic | 50.0% | |
CGTATGCTCGACTAGGCATT+TGG | - | chr1_3:59417496-59417515 | None:intergenic | 50.0% | |
TGAGACACGTATGCTCGACT+AGG | - | chr1_3:59417503-59417522 | None:intergenic | 50.0% | |
GTGTACGATAGGTGACATGC+TGG | - | chr1_3:59417864-59417883 | None:intergenic | 50.0% | |
GATGGGAGGGAATTAGTTGC+AGG | + | chr1_3:59418199-59418218 | Msa0129460:CDS | 50.0% | |
GTTCTTTCCCTCTGGACTTC+AGG | + | chr1_3:59418966-59418985 | Msa0129460:intron | 50.0% | |
! | TTCCCTCTGGACTTCAGGTT+AGG | + | chr1_3:59418971-59418990 | Msa0129460:intron | 50.0% |
! | TCCCTCTGGACTTCAGGTTA+GGG | + | chr1_3:59418972-59418991 | Msa0129460:intron | 50.0% |
TCCCTAACCTGAAGTCCAGA+GGG | - | chr1_3:59418976-59418995 | None:intergenic | 50.0% | |
AATGCTAAAGACAAGCCGGC+AGG | + | chr1_3:59419044-59419063 | Msa0129460:CDS | 50.0% | |
ATGCTAAAGACAAGCCGGCA+GGG | + | chr1_3:59419045-59419064 | Msa0129460:CDS | 50.0% | |
!! | GGTTTTGATGGGACACCTTG+AGG | + | chr1_3:59419067-59419086 | Msa0129460:CDS | 50.0% |
GAAATAGCGTCCATCTCCAC+GGG | - | chr1_3:59419111-59419130 | None:intergenic | 50.0% | |
! | TGCTAGAGCACTTCTGCTGA+TGG | + | chr1_3:59419283-59419302 | Msa0129460:intron | 50.0% |
! | GCTAGAGCACTTCTGCTGAT+GGG | + | chr1_3:59419284-59419303 | Msa0129460:intron | 50.0% |
! | GTAGCCACTGACTGATCACA+AGG | - | chr1_3:59419945-59419964 | None:intergenic | 50.0% |
CAGTCAGTGGCTACGTATAG+AGG | + | chr1_3:59419951-59419970 | Msa0129460:CDS | 50.0% | |
TATAACTAGGGGGAAGAGGG+AGG | + | chr1_3:59420328-59420347 | Msa0129460:intron | 50.0% | |
CTAACGAGCATAGGGTGGAA+AGG | - | chr1_3:59420902-59420921 | None:intergenic | 50.0% | |
AAGAGCTAACGAGCATAGGG+TGG | - | chr1_3:59420907-59420926 | None:intergenic | 50.0% | |
! | CTCGTTAGCTCTTCTTGGGA+TGG | + | chr1_3:59420914-59420933 | Msa0129460:CDS | 50.0% |
! | ATCTGCTGGGAGCTCTGATA+TGG | + | chr1_3:59420955-59420974 | Msa0129460:CDS | 50.0% |
! | AGCCTCGTCGGTTAAGAAGA+GGG | + | chr1_3:59420979-59420998 | Msa0129460:CDS | 50.0% |
TACCCTCTTCTTAACCGACG+AGG | - | chr1_3:59420984-59421003 | None:intergenic | 50.0% | |
GGTAGGTCGCTCGAGTTTGT+TGG | + | chr1_3:59416629-59416648 | Msa0129460:intron | 55.0% | |
AGCATCTTCACCGGGGAAAC+AGG | - | chr1_3:59417368-59417387 | None:intergenic | 55.0% | |
TGTTTCCCCGGTGAAGATGC+TGG | + | chr1_3:59417367-59417386 | Msa0129460:CDS | 55.0% | |
GGCCGCGAATCCAATTGTTC+AGG | + | chr1_3:59417392-59417411 | Msa0129460:CDS | 55.0% | |
CCTTCCCCGTCCTGAACAAT+TGG | - | chr1_3:59417405-59417424 | None:intergenic | 55.0% | |
CCAATTGTTCAGGACGGGGA+AGG | + | chr1_3:59417402-59417421 | Msa0129460:CDS | 55.0% | |
GGCATTTGGTCGATAGGCCA+AGG | - | chr1_3:59417482-59417501 | None:intergenic | 55.0% | |
! | ATGGTGCAGTTTGAAGCGGG+TGG | + | chr1_3:59418369-59418388 | Msa0129460:intron | 55.0% |
GTCCCTAACCTGAAGTCCAG+AGG | - | chr1_3:59418977-59418996 | None:intergenic | 55.0% | |
TGCTAAAGACAAGCCGGCAG+GGG | + | chr1_3:59419046-59419065 | Msa0129460:CDS | 55.0% | |
!! | AAGCCGGCAGGGGTTTTGAT+GGG | + | chr1_3:59419056-59419075 | Msa0129460:CDS | 55.0% |
TGTCCCATCAAAACCCCTGC+CGG | - | chr1_3:59419062-59419081 | None:intergenic | 55.0% | |
TTCGGTTATGAACAGCGGCG+AGG | - | chr1_3:59420671-59420690 | None:intergenic | 55.0% | |
CTCTGATATGGCAGCCTCGT+CGG | + | chr1_3:59420967-59420986 | Msa0129460:CDS | 55.0% | |
! | CAGCCTCGTCGGTTAAGAAG+AGG | + | chr1_3:59420978-59420997 | Msa0129460:CDS | 55.0% |
GCAGGAGATCCACGATGGGT+TGG | + | chr1_3:59418114-59418133 | Msa0129460:intron | 60.0% | |
!! | CAAGCCGGCAGGGGTTTTGA+TGG | + | chr1_3:59419055-59419074 | Msa0129460:CDS | 60.0% |
CTAGGGGGAAGAGGGAGGAT+AGG | + | chr1_3:59420333-59420352 | Msa0129460:intron | 60.0% | |
TTATGAACAGCGGCGAGGCC+AGG | - | chr1_3:59420666-59420685 | None:intergenic | 60.0% | |
TCCCCGGTGAAGATGCTGGC+AGG | + | chr1_3:59417371-59417390 | Msa0129460:CDS | 65.0% | |
GCCTGCCAGCATCTTCACCG+GGG | - | chr1_3:59417375-59417394 | None:intergenic | 65.0% | |
GGCCTGCCAGCATCTTCACC+GGG | - | chr1_3:59417376-59417395 | None:intergenic | 65.0% | |
CGGCCTGCCAGCATCTTCAC+CGG | - | chr1_3:59417377-59417396 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 59415809 | 59421196 | 59415809 | ID=Msa0129460;Name=Msa0129460 |
chr1_3 | mRNA | 59415809 | 59421196 | 59415809 | ID=Msa0129460-mRNA-1;Parent=Msa0129460;Name=Msa0129460-mRNA-1;_AED=0.14;_eAED=0.14;_QI=277|1|1|1|0.88|0.8|10|160|495 |
chr1_3 | exon | 59415809 | 59415995 | 59415809 | ID=Msa0129460-mRNA-1:exon:19339;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59417044 | 59417562 | 59417044 | ID=Msa0129460-mRNA-1:exon:19340;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59417632 | 59417751 | 59417632 | ID=Msa0129460-mRNA-1:exon:19341;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59417854 | 59417931 | 59417854 | ID=Msa0129460-mRNA-1:exon:19342;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59418118 | 59418294 | 59418118 | ID=Msa0129460-mRNA-1:exon:19343;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59418631 | 59418708 | 59418631 | ID=Msa0129460-mRNA-1:exon:19344;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59419023 | 59419198 | 59419023 | ID=Msa0129460-mRNA-1:exon:19345;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59419860 | 59420024 | 59419860 | ID=Msa0129460-mRNA-1:exon:19346;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59420194 | 59420254 | 59420194 | ID=Msa0129460-mRNA-1:exon:19347;Parent=Msa0129460-mRNA-1 |
chr1_3 | exon | 59420833 | 59421196 | 59420833 | ID=Msa0129460-mRNA-1:exon:19348;Parent=Msa0129460-mRNA-1 |
chr1_3 | five_prime_UTR | 59415809 | 59415995 | 59415809 | ID=Msa0129460-mRNA-1:five_prime_utr;Parent=Msa0129460-mRNA-1 |
chr1_3 | five_prime_UTR | 59417044 | 59417133 | 59417044 | ID=Msa0129460-mRNA-1:five_prime_utr;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59417134 | 59417562 | 59417134 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59417632 | 59417751 | 59417632 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59417854 | 59417931 | 59417854 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59418118 | 59418294 | 59418118 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59418631 | 59418708 | 59418631 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59419023 | 59419198 | 59419023 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59419860 | 59420024 | 59419860 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59420194 | 59420254 | 59420194 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | CDS | 59420833 | 59421036 | 59420833 | ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1 |
chr1_3 | three_prime_UTR | 59421037 | 59421196 | 59421037 | ID=Msa0129460-mRNA-1:three_prime_utr;Parent=Msa0129460-mRNA-1 |
Gene Sequence |
Protein sequence |