AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129460 MtrunA17_Chr1g0196321 98.586 495 7 0 1 495 1 495 0.0 1019
Msa0129460 MtrunA17_Chr2g0286731 69.954 436 127 2 49 484 32 463 0.0 645
Msa0129460 MtrunA17_Chr7g0253861 23.297 279 143 7 224 465 96 340 1.65e-16 80.9
Msa0129460 MtrunA17_Chr4g0067151 26.800 250 164 6 224 464 76 315 9.39e-16 78.2
Msa0129460 MtrunA17_Chr1g0185501 25.311 241 137 5 224 464 109 306 2.51e-15 77.0
Msa0129460 MtrunA17_Chr3g0093681 30.714 140 91 2 203 342 419 552 2.72e-13 72.4
Msa0129460 MtrunA17_Chr1g0172501 30.714 140 91 2 203 342 419 552 8.90e-13 70.5
Msa0129460 MtrunA17_Chr6g0448921 30.667 150 93 3 224 373 57 195 9.02e-13 70.9
Msa0129460 MtrunA17_Chr5g0405851 31.933 119 77 1 224 342 335 449 3.88e-11 65.1
Msa0129460 MtrunA17_Chr8g0352821 23.554 242 135 7 229 468 228 421 5.14e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129460 AT4G03020.1 71.753 485 132 3 10 491 10 492 0.0 724
Msa0129460 AT4G03020.2 71.753 485 132 3 10 491 10 492 0.0 724
Msa0129460 AT4G03020.3 71.753 485 132 3 10 491 10 492 0.0 724
Msa0129460 AT2G43770.1 23.843 281 139 6 224 465 94 338 4.11e-18 85.9
Msa0129460 AT3G49660.1 24.542 273 181 7 208 468 53 312 3.95e-15 76.6
Msa0129460 AT4G02730.1 26.141 241 125 7 224 459 126 318 7.67e-12 67.0
Msa0129460 AT1G11160.1 24.696 247 138 7 224 469 56 255 1.19e-11 67.8
Msa0129460 AT1G11160.2 24.696 247 138 7 224 469 56 255 1.21e-11 67.8
Msa0129460 AT1G11160.4 24.696 247 138 6 224 469 56 255 1.34e-11 67.8
Msa0129460 AT1G11160.3 24.696 247 138 6 224 469 14 213 1.36e-11 67.8
Msa0129460 AT5G08390.1 29.333 150 95 3 224 373 57 195 2.12e-11 67.0
Msa0129460 AT1G61210.3 23.394 218 135 5 265 468 12 211 5.16e-11 65.9
Msa0129460 AT1G61210.1 23.394 218 135 5 265 468 12 211 7.82e-11 65.5
Msa0129460 AT1G61210.2 23.394 218 135 5 265 468 12 211 8.53e-11 65.1
Msa0129460 AT5G23430.1 28.105 153 93 4 224 373 57 195 8.74e-11 65.1
Msa0129460 AT5G23430.3 28.105 153 93 4 224 373 57 195 9.05e-11 65.1
Msa0129460 AT5G23430.2 28.105 153 93 4 224 373 57 195 9.05e-11 65.1

Find 120 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTCTGCTTTGGGTAAT+TGG 0.178793 1_3:-59415878 None:intergenic
AATCTCTTACAGGTGATTTA+TGG 0.181919 1_3:-59420865 None:intergenic
ATGTGCAAATTGTTACAAAA+AGG 0.220757 1_3:-59415916 None:intergenic
CTATGCTCGTTAGCTCTTCT+TGG 0.255220 1_3:+59420909 Msa0129460:CDS
AGCAGATATTTACCTGTAAA+TGG 0.272385 1_3:+59417455 Msa0129460:CDS
ATATGATCTTGAAACAAATA+AGG 0.306324 1_3:+59418246 Msa0129460:CDS
TAGCACTGGAAAATCTAAAA+AGG 0.311940 1_3:+59417244 Msa0129460:CDS
ATATGGTGTTTGACATAATA+AGG 0.315445 1_3:+59421106 Msa0129460:three_prime_UTR
GACGATGGAGGATACTCTTT+TGG 0.318718 1_3:+59418151 Msa0129460:CDS
TTCATGGAATCTTCTGCTTT+GGG 0.326986 1_3:-59415885 None:intergenic
GTTCATGGAATCTTCTGCTT+TGG 0.330166 1_3:-59415886 None:intergenic
CCTTCCCCGTCCTGAACAAT+TGG 0.339582 1_3:-59417402 None:intergenic
GTTGATATTGAAGTTGTATA+TGG 0.348324 1_3:+59421089 Msa0129460:three_prime_UTR
TTTAAATAGCTCAGATGCTT+TGG 0.350837 1_3:+59417076 Msa0129460:five_prime_UTR
AGCATCTTCACCGGGGAAAC+AGG 0.359807 1_3:-59417365 None:intergenic
ACGTATGTCCCAAAGTTTGA+TGG 0.361310 1_3:-59419153 None:intergenic
TGCACTTTACGTTGACCAAA+TGG 0.380038 1_3:+59417151 Msa0129460:CDS
TGCCAACTACAATCTCTTAC+AGG 0.382540 1_3:-59420875 None:intergenic
TTCCAGTGCTAGAATCTTCA+AGG 0.382938 1_3:-59417232 None:intergenic
ATAGTTATGTACGCTATATC+TGG 0.384746 1_3:+59417128 Msa0129460:exon
ACTGATTTAACTGACATCAT+AGG 0.385029 1_3:-59421030 None:intergenic
CTTACTAGATGGCTTTGATC+AGG 0.388290 1_3:-59417734 None:intergenic
ATCTGCTGGGAGCTCTGATA+TGG 0.391469 1_3:+59420955 Msa0129460:CDS
GGCCAGAAGTATATCTATAC+TGG 0.393179 1_3:+59420198 Msa0129460:CDS
ATCCAGTATAGATATACTTC+TGG 0.402582 1_3:-59420200 None:intergenic
TGATACAGACCATACCTCTT+AGG 0.407084 1_3:-59415988 None:intergenic
ATAGGCCAAGGACCATTTAC+AGG 0.415805 1_3:-59417467 None:intergenic
GGCCGCGAATCCAATTGTTC+AGG 0.416503 1_3:+59417392 Msa0129460:CDS
CGTATGCTCGACTAGGCATT+TGG 0.426545 1_3:-59417493 None:intergenic
TACTCATAGCATAACCCATT+TGG 0.431168 1_3:-59417166 None:intergenic
AGATCAGACCATCAAACTTT+GGG 0.433353 1_3:+59419145 Msa0129460:CDS
GGGATGGAGATGTTGTAAAA+TGG 0.435817 1_3:+59420930 Msa0129460:CDS
AAGATCAGACCATCAAACTT+TGG 0.439366 1_3:+59419144 Msa0129460:CDS
TATGCTCGTTAGCTCTTCTT+GGG 0.443104 1_3:+59420910 Msa0129460:CDS
GATGGGAGGGAATTAGTTGC+AGG 0.457956 1_3:+59418199 Msa0129460:CDS
AATTTCAGTAACCGTGTTCG+TGG 0.462360 1_3:+59419852 Msa0129460:intron
ATGTGTTTATGTATATGATT+TGG 0.470295 1_3:+59420233 Msa0129460:CDS
ATCGTACACATTGTAAATGT+TGG 0.472091 1_3:+59417875 Msa0129460:CDS
ATTTACCTGTAAATGGTCCT+TGG 0.479935 1_3:+59417462 Msa0129460:CDS
CGGCCTGCCAGCATCTTCAC+CGG 0.481898 1_3:-59417374 None:intergenic
CAGTCAGTGGCTACGTATAG+AGG 0.482615 1_3:+59419951 Msa0129460:CDS
GCACTTTACGTTGACCAAAT+GGG 0.482739 1_3:+59417152 Msa0129460:CDS
CGAATCCAATTGTTCAGGAC+GGG 0.482995 1_3:+59417397 Msa0129460:CDS
ATCCTTGAAGATTCTAGCAC+TGG 0.486362 1_3:+59417230 Msa0129460:CDS
TCCCCGGTGAAGATGCTGGC+AGG 0.486810 1_3:+59417371 Msa0129460:CDS
CTCGTTAGCTCTTCTTGGGA+TGG 0.489305 1_3:+59420914 Msa0129460:CDS
TGAATGGGATTACAGGTGGA+TGG 0.490487 1_3:+59419887 Msa0129460:CDS
GTCCTGAACAATTGGATTCG+CGG 0.491213 1_3:-59417394 None:intergenic
ATTATTTATGTACAAGATTG+TGG 0.493007 1_3:-59421143 None:intergenic
ACTGGCCATCTTATTTACTC+TGG 0.494750 1_3:+59418664 Msa0129460:CDS
GAAAGAGTTGCCTGTTTCCC+CGG 0.495375 1_3:+59417355 Msa0129460:CDS
TATACAATGTGGACAAAGGT+TGG 0.499477 1_3:+59417648 Msa0129460:CDS
CTGCTAGTACATGATGGGTC+TGG 0.500073 1_3:+59417329 Msa0129460:CDS
TTACTAGATGGCTTTGATCA+GGG 0.501289 1_3:-59417733 None:intergenic
CTCTGATATGGCAGCCTCGT+CGG 0.501439 1_3:+59420967 Msa0129460:CDS
GGACGCTATTTCATTTCAAA+CGG 0.501559 1_3:+59419119 Msa0129460:CDS
CATCAACTGCTAGTACATGA+TGG 0.505267 1_3:+59417323 Msa0129460:CDS
CAAGAAGAGCTAACGAGCAT+AGG 0.505730 1_3:-59420908 None:intergenic
CACCTGTAAGAGATTGTAGT+TGG 0.509483 1_3:+59420873 Msa0129460:CDS
TGTCCCATCAAAACCCCTGC+CGG 0.512728 1_3:-59419059 None:intergenic
GTAACCGTGTTCGTGGATAT+AGG 0.517492 1_3:+59419859 Msa0129460:intron
CCAATTGTTCAGGACGGGGA+AGG 0.517976 1_3:+59417402 Msa0129460:CDS
TGTTTCCCCGGTGAAGATGC+TGG 0.519063 1_3:+59417367 Msa0129460:CDS
AATGCTAAAGACAAGCCGGC+AGG 0.520946 1_3:+59419044 Msa0129460:CDS
TTTATTGATACCCGTGGAGA+TGG 0.521044 1_3:+59419098 Msa0129460:CDS
TTTAGTGGTCACCTAAAAGC+TGG 0.522377 1_3:-59420014 None:intergenic
CAATAAATGTAATGCCCTCA+AGG 0.532155 1_3:-59419082 None:intergenic
AAGAGCATACCTGGTAACAT+TGG 0.534358 1_3:-59419186 None:intergenic
GTTGTAAAATGGCAATCTGC+TGG 0.535124 1_3:+59420941 Msa0129460:CDS
TGCTAAAGACAAGCCGGCAG+GGG 0.535291 1_3:+59419046 Msa0129460:CDS
GACTCTAGTGATACTGAAGA+TGG 0.540581 1_3:+59417200 Msa0129460:CDS
CAAGAGTGCGTAAGACTGAA+TGG 0.543044 1_3:-59419974 None:intergenic
GATGATTCATTACAGGTGAG+TGG 0.544157 1_3:+59420818 Msa0129460:intron
CGACTAGGCATTTGGTCGAT+AGG 0.547791 1_3:-59417485 None:intergenic
TACTAGATGGCTTTGATCAG+GGG 0.548826 1_3:-59417732 None:intergenic
GCAGGAGATCCACGATGGGT+TGG 0.550911 1_3:+59418114 Msa0129460:intron
GGCCTGCCAGCATCTTCACC+GGG 0.553632 1_3:-59417373 None:intergenic
AAGAAGAGCTAACGAGCATA+GGG 0.554781 1_3:-59420907 None:intergenic
ATGCTAAAGACAAGCCGGCA+GGG 0.560101 1_3:+59419045 Msa0129460:CDS
CACTTCCAGAGTAAATAAGA+TGG 0.565103 1_3:-59418669 None:intergenic
TTTGCAGGATTGACAAACAC+AGG 0.573696 1_3:+59417037 Msa0129460:intron
CTTAAATGCTAAAGACAAGC+CGG 0.577168 1_3:+59419040 Msa0129460:CDS
ACATTTACAATGTGTACGAT+AGG 0.581114 1_3:-59417872 None:intergenic
ATCAACTGCTAGTACATGAT+GGG 0.581257 1_3:+59417324 Msa0129460:CDS
TTGTAAAATGGCAATCTGCT+GGG 0.586915 1_3:+59420942 Msa0129460:CDS
ACAGACCATACCTCTTAGGA+TGG 0.590479 1_3:-59415984 None:intergenic
GAAATAGCGTCCATCTCCAC+GGG 0.592069 1_3:-59419108 None:intergenic
TGAAATAGCGTCCATCTCCA+CGG 0.592795 1_3:-59419109 None:intergenic
ATGAGGTGTTGATTTCAACT+TGG 0.593854 1_3:-59417303 None:intergenic
AAATGTCATCCAATGTTACC+AGG 0.595793 1_3:+59419177 Msa0129460:CDS
AAAATATACAATGTGGACAA+AGG 0.599948 1_3:+59417644 Msa0129460:CDS
AGCCTCGTCGGTTAAGAAGA+GGG 0.600390 1_3:+59420979 Msa0129460:CDS
CAGCCTCGTCGGTTAAGAAG+AGG 0.601348 1_3:+59420978 Msa0129460:CDS
GAATTAGTTGCAGGAACTAG+TGG 0.606878 1_3:+59418208 Msa0129460:CDS
TTCTAACTAAGAGTTTGAGA+TGG 0.609877 1_3:+59417687 Msa0129460:CDS
CTAACGAGCATAGGGTGGAA+AGG 0.614104 1_3:-59420899 None:intergenic
TAGTACATGATGGGTCTGGA+AGG 0.615748 1_3:+59417333 Msa0129460:CDS
GCGAATCCAATTGTTCAGGA+CGG 0.617169 1_3:+59417396 Msa0129460:CDS
TTGCAGGATTGACAAACACA+GGG 0.622055 1_3:+59417038 Msa0129460:intron
TGAGACACGTATGCTCGACT+AGG 0.624491 1_3:-59417500 None:intergenic
AACTCCTATATCCACGAACA+CGG 0.626589 1_3:-59419863 None:intergenic
GGCATTTGGTCGATAGGCCA+AGG 0.629750 1_3:-59417479 None:intergenic
GAATCCAATTGTTCAGGACG+GGG 0.630776 1_3:+59417398 Msa0129460:CDS
AGTTTCATCAGCAAAACATA+CGG 0.631088 1_3:-59418644 None:intergenic
GTGTACGATAGGTGACATGC+TGG 0.632627 1_3:-59417861 None:intergenic
TGCTATGAGTAGATTAGACG+TGG 0.632706 1_3:+59417178 Msa0129460:CDS
AAGAGCTAACGAGCATAGGG+TGG 0.635204 1_3:-59420904 None:intergenic
TCATGTACTAGCAGTTGATG+AGG 0.637096 1_3:-59417320 None:intergenic
ATTACATTTATTGATACCCG+TGG 0.637357 1_3:+59419092 Msa0129460:CDS
CAAAAGATGACAGCGATCAG+CGG 0.644029 1_3:-59417432 None:intergenic
AAGTGATGATAGTTTCTGCA+AGG 0.652431 1_3:+59418687 Msa0129460:CDS
AATATGCAGGAGATCCACGA+TGG 0.665955 1_3:+59418109 Msa0129460:intron
TCATCCTTGTGATCAGTCAG+TGG 0.674274 1_3:+59419938 Msa0129460:CDS
GTAGCCACTGACTGATCACA+AGG 0.680555 1_3:-59419942 None:intergenic
CATAACTATTCAAATCAACA+CGG 0.685486 1_3:-59417114 None:intergenic
ATATGCAGGAGATCCACGAT+GGG 0.686383 1_3:+59418110 Msa0129460:intron
AGAGTCACTAGCAAATGTGA+CGG 0.704087 1_3:+59417910 Msa0129460:CDS
TACCCTCTTCTTAACCGACG+AGG 0.713771 1_3:-59420981 None:intergenic
GCCTGCCAGCATCTTCACCG+GGG 0.715871 1_3:-59417372 None:intergenic
TGCAGGATTGACAAACACAG+GGG 0.738451 1_3:+59417039 Msa0129460:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAAATTAATTTATTTTTC+AGG + chr1_3:59417610-59417629 Msa0129460:intron 10.0%
!!! CTAAATTAATTTATTTTTCA+GGG + chr1_3:59417611-59417630 Msa0129460:intron 10.0%
!! AAGAAAAATAATTGATTAAA+AGG - chr1_3:59417785-59417804 None:intergenic 10.0%
!! AAATAAATTATAAAACTTGA+GGG - chr1_3:59420373-59420392 None:intergenic 10.0%
!! AAAATAAATTATAAAACTTG+AGG - chr1_3:59420374-59420393 None:intergenic 10.0%
!! AATAATCACATAGATTAAAT+GGG - chr1_3:59416143-59416162 None:intergenic 15.0%
!! TAATAATCACATAGATTAAA+TGG - chr1_3:59416144-59416163 None:intergenic 15.0%
!!! ACAATTTTTTCTTATCTATA+TGG + chr1_3:59416968-59416987 Msa0129460:intron 15.0%
!! CTAAATAGATGTAATATTTA+TGG - chr1_3:59418311-59418330 None:intergenic 15.0%
!!! AGATTTTATGTTTTTATCAT+CGG + chr1_3:59420281-59420300 Msa0129460:intron 15.0%
!! AAATAGTATAATCTATAACT+AGG + chr1_3:59420315-59420334 Msa0129460:intron 15.0%
!! AATAGTATAATCTATAACTA+GGG + chr1_3:59420316-59420335 Msa0129460:intron 15.0%
!! AATAAATTATAAAACTTGAG+GGG - chr1_3:59420372-59420391 None:intergenic 15.0%
!! TTGATAAATTATTCAATCAT+TGG - chr1_3:59420426-59420445 None:intergenic 15.0%
!!! AAAAGATGAAATTTAAGATT+TGG + chr1_3:59420480-59420499 Msa0129460:intron 15.0%
!!! TGTAATGTATTATTTTTAAG+CGG + chr1_3:59420720-59420739 Msa0129460:intron 15.0%
!!! GAATTTGATTCTGTAAATTT+TGG - chr1_3:59416074-59416093 None:intergenic 20.0%
!!! AAGTTAGTTAGTTTGTTATT+CGG + chr1_3:59416715-59416734 Msa0129460:intron 20.0%
!! ATATGATCTTGAAACAAATA+AGG + chr1_3:59418246-59418265 Msa0129460:CDS 20.0%
!! TAAATTATAGATTCAGACAA+TGG - chr1_3:59418350-59418369 None:intergenic 20.0%
!! TTGTCTGAATCTATAATTTA+TGG + chr1_3:59418350-59418369 Msa0129460:intron 20.0%
!! TCTAATGTACAAAATTGTTT+AGG + chr1_3:59419001-59419020 Msa0129460:intron 20.0%
!! TTCATATAATTCAACAGATA+TGG - chr1_3:59419227-59419246 None:intergenic 20.0%
!! TAAATTAGACGACTTATATT+AGG + chr1_3:59419431-59419450 Msa0129460:intron 20.0%
!! AATTATGTTGTAAAATTGTG+AGG + chr1_3:59419546-59419565 Msa0129460:intron 20.0%
!!! AAACTCTGTATTTTTCATTT+TGG - chr1_3:59419630-59419649 None:intergenic 20.0%
!! ACTGAAATTTAGAGAAAAAT+CGG - chr1_3:59419841-59419860 None:intergenic 20.0%
!! CTTGAGCATATTAAAATTAT+TGG + chr1_3:59420118-59420137 Msa0129460:intron 20.0%
!! ATGTGTTTATGTATATGATT+TGG + chr1_3:59420233-59420252 Msa0129460:CDS 20.0%
!! ATAGTATAATCTATAACTAG+GGG + chr1_3:59420317-59420336 Msa0129460:intron 20.0%
!! ATTATTTATGTACAAGATTG+TGG - chr1_3:59421146-59421165 None:intergenic 20.0%
! TGTGCAAATTGTTACAAAAA+GGG - chr1_3:59415918-59415937 None:intergenic 25.0%
! ATGTGCAAATTGTTACAAAA+AGG - chr1_3:59415919-59415938 None:intergenic 25.0%
!!! AATTTTTGGTTTGTCTGATA+TGG - chr1_3:59415964-59415983 None:intergenic 25.0%
! ATGCACAAATACATATTAAG+AGG - chr1_3:59416178-59416197 None:intergenic 25.0%
!! TTACAGAAAAGTACAAAAAC+AGG - chr1_3:59416429-59416448 None:intergenic 25.0%
!!! AATTTTATGCATTGAGTTGT+CGG + chr1_3:59416579-59416598 Msa0129460:intron 25.0%
! ATTCATAGTTTACTGATAAG+TGG + chr1_3:59416607-59416626 Msa0129460:intron 25.0%
! TTCATAGTTTACTGATAAGT+GGG + chr1_3:59416608-59416627 Msa0129460:intron 25.0%
!!! AGTTAGTTAGTTTGTTATTC+GGG + chr1_3:59416716-59416735 Msa0129460:intron 25.0%
!!! GAATTGGTTAGTTTGTTATT+TGG + chr1_3:59416760-59416779 Msa0129460:intron 25.0%
!!! TATCTTTTTACGTTTTAACC+AGG + chr1_3:59416934-59416953 Msa0129460:intron 25.0%
! AAATTGTTAAAACAACAACC+TGG - chr1_3:59416955-59416974 None:intergenic 25.0%
! AAAATGTATGACGAAACAAT+AGG - chr1_3:59417015-59417034 None:intergenic 25.0%
! CATAACTATTCAAATCAACA+CGG - chr1_3:59417117-59417136 None:intergenic 25.0%
! AAACTATAGATGCATACATA+GGG - chr1_3:59417586-59417605 None:intergenic 25.0%
! AAAACTATAGATGCATACAT+AGG - chr1_3:59417587-59417606 None:intergenic 25.0%
!!! CCACATTGTATATTTTTATG+TGG - chr1_3:59417640-59417659 None:intergenic 25.0%
! CCACATAAAAATATACAATG+TGG + chr1_3:59417637-59417656 Msa0129460:CDS 25.0%
! AAAATATACAATGTGGACAA+AGG + chr1_3:59417644-59417663 Msa0129460:CDS 25.0%
!!! AACTGTCTTAGTTTTTCTTA+TGG + chr1_3:59417809-59417828 Msa0129460:intron 25.0%
! TTTCAGTTCTTATAATATGC+AGG + chr1_3:59418096-59418115 Msa0129460:intron 25.0%
!! CTATTTAGCTTCATATGATT+TGG + chr1_3:59418323-59418342 Msa0129460:intron 25.0%
!! TGGAGAAATCATTTTCATAT+TGG + chr1_3:59418533-59418552 Msa0129460:intron 25.0%
!! GGAGAAATCATTTTCATATT+GGG + chr1_3:59418534-59418553 Msa0129460:intron 25.0%
!! AAATCATTTTCATATTGGGA+TGG + chr1_3:59418538-59418557 Msa0129460:intron 25.0%
!! AAAGTATTTACACATACCAT+AGG + chr1_3:59418575-59418594 Msa0129460:intron 25.0%
!! ACCATAGGTTTTCTAAATTT+TGG + chr1_3:59418590-59418609 Msa0129460:intron 25.0%
! ACCAAAATTTAGAAAACCTA+TGG - chr1_3:59418594-59418613 None:intergenic 25.0%
! TCTATGTGAAATCAAAAGTT+GGG - chr1_3:59418779-59418798 None:intergenic 25.0%
! TTCTATGTGAAATCAAAAGT+TGG - chr1_3:59418780-59418799 None:intergenic 25.0%
! CAGAAAGTTTATATTGTAGT+TGG + chr1_3:59418934-59418953 Msa0129460:intron 25.0%
! GTATACTTGTGAATTATCTA+TGG + chr1_3:59419573-59419592 Msa0129460:intron 25.0%
!! ATATAGAATTAGCTTAGTCT+CGG - chr1_3:59419786-59419805 None:intergenic 25.0%
! GAAAATGAAGAATGATGAAA+AGG - chr1_3:59420049-59420068 None:intergenic 25.0%
! TCCAAATATGAAAATCAAAG+GGG - chr1_3:59420083-59420102 None:intergenic 25.0%
! GTCCAAATATGAAAATCAAA+GGG - chr1_3:59420084-59420103 None:intergenic 25.0%
! TGTCCAAATATGAAAATCAA+AGG - chr1_3:59420085-59420104 None:intergenic 25.0%
! AATTTGAAGAAAACAACATC+AGG - chr1_3:59420169-59420188 None:intergenic 25.0%
! TAGTATAATCTATAACTAGG+GGG + chr1_3:59420318-59420337 Msa0129460:intron 25.0%
!! CTAATATTTTCATGCAGAAA+TGG - chr1_3:59420450-59420469 None:intergenic 25.0%
!! ATGAAATTTAAGATTTGGAG+TGG + chr1_3:59420485-59420504 Msa0129460:intron 25.0%
! GAGATACTGCTTATAAAATT+CGG - chr1_3:59420689-59420708 None:intergenic 25.0%
!!! CAAGGCATTGTATTTTTATT+GGG - chr1_3:59420782-59420801 None:intergenic 25.0%
!! AAACTTTGATGATTCATTAC+AGG + chr1_3:59420811-59420830 Msa0129460:intron 25.0%
! GTTGATATTGAAGTTGTATA+TGG + chr1_3:59421089-59421108 Msa0129460:three_prime_UTR 25.0%
! ATATGGTGTTTGACATAATA+AGG + chr1_3:59421106-59421125 Msa0129460:three_prime_UTR 25.0%
AAAGTGAAAGTCAACTGAAA+GGG - chr1_3:59416108-59416127 None:intergenic 30.0%
TAAAGTGAAAGTCAACTGAA+AGG - chr1_3:59416109-59416128 None:intergenic 30.0%
AACAGTGACTAAAAATTCAC+AGG - chr1_3:59416240-59416259 None:intergenic 30.0%
ATGATGTTTGTCAAATTCCT+TGG + chr1_3:59416394-59416413 Msa0129460:intron 30.0%
AAGTACAAAAACAGGTTCAT+GGG - chr1_3:59416421-59416440 None:intergenic 30.0%
AAAGTACAAAAACAGGTTCA+TGG - chr1_3:59416422-59416441 None:intergenic 30.0%
ATACTAGTGTATCAATATGG+GGG - chr1_3:59416521-59416540 None:intergenic 30.0%
CATACTAGTGTATCAATATG+GGG - chr1_3:59416522-59416541 None:intergenic 30.0%
GCATACTAGTGTATCAATAT+GGG - chr1_3:59416523-59416542 None:intergenic 30.0%
TGCATACTAGTGTATCAATA+TGG - chr1_3:59416524-59416543 None:intergenic 30.0%
TTGATACACTAGTATGCATA+TGG + chr1_3:59416526-59416545 Msa0129460:intron 30.0%
TATGCATATGGTATTCACTA+GGG + chr1_3:59416538-59416557 Msa0129460:intron 30.0%
!! ATTTTATGCATTGAGTTGTC+GGG + chr1_3:59416580-59416599 Msa0129460:intron 30.0%
!!! GTTTTGAGTTGTTAGAGAAT+TGG + chr1_3:59416744-59416763 Msa0129460:intron 30.0%
AAACACATGATATTTGATCC+CGG - chr1_3:59416899-59416918 None:intergenic 30.0%
!!! CGTCATACATTTTATTTTGC+AGG + chr1_3:59417022-59417041 Msa0129460:intron 30.0%
TTTAAATAGCTCAGATGCTT+TGG + chr1_3:59417076-59417095 Msa0129460:five_prime_UTR 30.0%
ATAGTTATGTACGCTATATC+TGG + chr1_3:59417128-59417147 Msa0129460:exon 30.0%
! TAGCACTGGAAAATCTAAAA+AGG + chr1_3:59417244-59417263 Msa0129460:CDS 30.0%
AGCAGATATTTACCTGTAAA+TGG + chr1_3:59417455-59417474 Msa0129460:CDS 30.0%
TAAAAGTGAAAATGCTTACC+TGG - chr1_3:59417562-59417581 None:intergenic 30.0%
TTCTAACTAAGAGTTTGAGA+TGG + chr1_3:59417687-59417706 Msa0129460:CDS 30.0%
CATTTGCATTCTTCAATTTC+AGG + chr1_3:59417832-59417851 Msa0129460:intron 30.0%
ACATTTACAATGTGTACGAT+AGG - chr1_3:59417875-59417894 None:intergenic 30.0%
ATCGTACACATTGTAAATGT+TGG + chr1_3:59417875-59417894 Msa0129460:CDS 30.0%
CCAAAGATCATAATTCAATG+TGG - chr1_3:59417939-59417958 None:intergenic 30.0%
CCACATTGAATTATGATCTT+TGG + chr1_3:59417936-59417955 Msa0129460:intron 30.0%
TCAGAGGAATAGATACAAAT+TGG + chr1_3:59417998-59418017 Msa0129460:intron 30.0%
!!! TTTTCTAAGATGTCTGTAAC+TGG + chr1_3:59418022-59418041 Msa0129460:intron 30.0%
ATGAAAAGAACACCATCAAA+CGG - chr1_3:59418063-59418082 None:intergenic 30.0%
! GATTTTTCATCAAATGACGA+TGG + chr1_3:59418136-59418155 Msa0129460:CDS 30.0%
! TCTGTGAAATTTTCAACAGA+TGG + chr1_3:59418181-59418200 Msa0129460:CDS 30.0%
! CTGTGAAATTTTCAACAGAT+GGG + chr1_3:59418182-59418201 Msa0129460:CDS 30.0%
GACATTGTCAATAGATTAAG+TGG - chr1_3:59418449-59418468 None:intergenic 30.0%
AGTTTCATCAGCAAAACATA+CGG - chr1_3:59418647-59418666 None:intergenic 30.0%
AGGTATGTTCTACAATAAGA+TGG + chr1_3:59418707-59418726 Msa0129460:intron 30.0%
ATCTCATACTTATATCGTCA+AGG + chr1_3:59418829-59418848 Msa0129460:intron 30.0%
TGTACAAAATTGTTTAGGTC+TGG + chr1_3:59419006-59419025 Msa0129460:intron 30.0%
GTACAAAATTGTTTAGGTCT+GGG + chr1_3:59419007-59419026 Msa0129460:intron 30.0%
ATTACATTTATTGATACCCG+TGG + chr1_3:59419092-59419111 Msa0129460:CDS 30.0%
TGGGAAAGATAAAATTCATG+TGG + chr1_3:59419303-59419322 Msa0129460:intron 30.0%
AGTAAAATACACCTTGTTCA+TGG + chr1_3:59419358-59419377 Msa0129460:intron 30.0%
ACTCTAAATTTCCATGAACA+AGG - chr1_3:59419372-59419391 None:intergenic 30.0%
!! AACTCTAGTTAACTTGTATC+TGG + chr1_3:59419406-59419425 Msa0129460:intron 30.0%
CTAATGCATAATAGAGATAC+AGG + chr1_3:59419495-59419514 Msa0129460:intron 30.0%
!!! TGGATATAGGAGTTTTGAAT+GGG + chr1_3:59419872-59419891 Msa0129460:CDS 30.0%
TGAAGAATGATGAAAAGGTA+AGG - chr1_3:59420044-59420063 None:intergenic 30.0%
!! TCCCCTTTGATTTTCATATT+TGG + chr1_3:59420079-59420098 Msa0129460:intron 30.0%
TTTCTTCAAATTTACAGCAC+TGG + chr1_3:59420177-59420196 Msa0129460:intron 30.0%
ATCCAGTATAGATATACTTC+TGG - chr1_3:59420203-59420222 None:intergenic 30.0%
!! TTTAGGCATTTTGCTATGTT+CGG - chr1_3:59420540-59420559 None:intergenic 30.0%
!! TAGTAGTTTGCTGATTGTTT+AGG - chr1_3:59420557-59420576 None:intergenic 30.0%
!!! GAGTATTAGAGTTTTGTTCA+TGG + chr1_3:59420622-59420641 Msa0129460:intron 30.0%
TAAAATTCGGTTATGAACAG+CGG - chr1_3:59420676-59420695 None:intergenic 30.0%
!!! GCAAGGCATTGTATTTTTAT+TGG - chr1_3:59420783-59420802 None:intergenic 30.0%
TCAAAGTTTCTTATTGAGCA+AGG - chr1_3:59420800-59420819 None:intergenic 30.0%
AATCTCTTACAGGTGATTTA+TGG - chr1_3:59420868-59420887 None:intergenic 30.0%
! ACTGATTTAACTGACATCAT+AGG - chr1_3:59421033-59421052 None:intergenic 30.0%
! AATCTTCTGCTTTGGGTAAT+TGG - chr1_3:59415881-59415900 None:intergenic 35.0%
TTCATGGAATCTTCTGCTTT+GGG - chr1_3:59415888-59415907 None:intergenic 35.0%
CAAAAAGGGAAACATGTTCA+TGG - chr1_3:59415904-59415923 None:intergenic 35.0%
ACCAAAAATTCCATCCTAAG+AGG + chr1_3:59415974-59415993 Msa0129460:five_prime_UTR 35.0%
! ACCTCTTAGGATGGAATTTT+TGG - chr1_3:59415978-59415997 None:intergenic 35.0%
AAATTCCATCCTAAGAGGTA+TGG + chr1_3:59415979-59415998 Msa0129460:intron 35.0%
AAGTGAAAGTCAACTGAAAG+GGG - chr1_3:59416107-59416126 None:intergenic 35.0%
!! TGTTGATGATGTTGTGGAAA+GGG + chr1_3:59416256-59416275 Msa0129460:intron 35.0%
AAACAACGACTGAAAAGAAG+TGG + chr1_3:59416331-59416350 Msa0129460:intron 35.0%
AGAAAACCATCCCCATTATA+AGG + chr1_3:59416466-59416485 Msa0129460:intron 35.0%
TGGTTCTTTCGCCTTATAAT+GGG - chr1_3:59416480-59416499 None:intergenic 35.0%
GTATGCATATGGTATTCACT+AGG + chr1_3:59416537-59416556 Msa0129460:intron 35.0%
TAGTTTACTGATAAGTGGGT+AGG + chr1_3:59416612-59416631 Msa0129460:intron 35.0%
! TAGAGAGTATGTGCATAAAC+AGG + chr1_3:59416789-59416808 Msa0129460:intron 35.0%
TGATATTTGATCCCGGATTA+CGG - chr1_3:59416892-59416911 None:intergenic 35.0%
ATCAACACGGAAAAATGTTG+CGG - chr1_3:59417104-59417123 None:intergenic 35.0%
TACTCATAGCATAACCCATT+TGG - chr1_3:59417169-59417188 None:intergenic 35.0%
!! ATGAGGTGTTGATTTCAACT+TGG - chr1_3:59417306-59417325 None:intergenic 35.0%
ATCAACTGCTAGTACATGAT+GGG + chr1_3:59417324-59417343 Msa0129460:CDS 35.0%
ATTTACCTGTAAATGGTCCT+TGG + chr1_3:59417462-59417481 Msa0129460:CDS 35.0%
!!! ATGGTTCACTTTTTGTTGCT+GGG + chr1_3:59417534-59417553 Msa0129460:CDS 35.0%
TATACAATGTGGACAAAGGT+TGG + chr1_3:59417648-59417667 Msa0129460:CDS 35.0%
!! TTACTAGATGGCTTTGATCA+GGG - chr1_3:59417736-59417755 None:intergenic 35.0%
AAAGCCATCTAGTAAGTAAC+TGG + chr1_3:59417741-59417760 Msa0129460:intron 35.0%
GTTTCCAGTTACTTACTAGA+TGG - chr1_3:59417748-59417767 None:intergenic 35.0%
!! GTTTTGAATGCTATGATCAG+AGG + chr1_3:59417982-59418001 Msa0129460:intron 35.0%
! TTTTCATCAAATGACGATGG+AGG + chr1_3:59418139-59418158 Msa0129460:CDS 35.0%
! TGAAATTTTCAACAGATGGG+AGG + chr1_3:59418185-59418204 Msa0129460:CDS 35.0%
! GAAATTTTCAACAGATGGGA+GGG + chr1_3:59418186-59418205 Msa0129460:CDS 35.0%
ATTTATGGTGCAGTTTGAAG+CGG + chr1_3:59418365-59418384 Msa0129460:intron 35.0%
! AGTTTGCTTAGCTGCATAAT+AGG + chr1_3:59418416-59418435 Msa0129460:intron 35.0%
!! TTGGTTTTCATTTTACGTGC+AGG + chr1_3:59418609-59418628 Msa0129460:intron 35.0%
! GTATGTTTTGCTGATGAAAC+TGG + chr1_3:59418646-59418665 Msa0129460:CDS 35.0%
CACTTCCAGAGTAAATAAGA+TGG - chr1_3:59418672-59418691 None:intergenic 35.0%
AAGTGATGATAGTTTCTGCA+AGG + chr1_3:59418687-59418706 Msa0129460:CDS 35.0%
CAAAAGTTGGGATACTCAAA+AGG - chr1_3:59418767-59418786 None:intergenic 35.0%
! GTAATGAACACCTTTTACAC+AGG + chr1_3:59418800-59418819 Msa0129460:intron 35.0%
AGATTGAACTCCTGTGTAAA+AGG - chr1_3:59418813-59418832 None:intergenic 35.0%
!! ATTGTTTTGTTCTTTCCCTC+TGG + chr1_3:59418958-59418977 Msa0129460:intron 35.0%
CTTAAATGCTAAAGACAAGC+CGG + chr1_3:59419040-59419059 Msa0129460:CDS 35.0%
CAATAAATGTAATGCCCTCA+AGG - chr1_3:59419085-59419104 None:intergenic 35.0%
! GGACGCTATTTCATTTCAAA+CGG + chr1_3:59419119-59419138 Msa0129460:CDS 35.0%
AAGATCAGACCATCAAACTT+TGG + chr1_3:59419144-59419163 Msa0129460:CDS 35.0%
AGATCAGACCATCAAACTTT+GGG + chr1_3:59419145-59419164 Msa0129460:CDS 35.0%
AAATGTCATCCAATGTTACC+AGG + chr1_3:59419177-59419196 Msa0129460:CDS 35.0%
CAACAGATATGGATACCAAA+AGG - chr1_3:59419216-59419235 None:intergenic 35.0%
ACCTTATAGAAATGTGTGCT+CGG - chr1_3:59419526-59419545 None:intergenic 35.0%
!!! GTGGATATAGGAGTTTTGAA+TGG + chr1_3:59419871-59419890 Msa0129460:CDS 35.0%
! TGATTCAAGTCTTTTGCTTG+TGG - chr1_3:59419921-59419940 None:intergenic 35.0%
TTGTAAAATGGCAATCTGCT+GGG + chr1_3:59420942-59420961 Msa0129460:CDS 35.0%
GTTCATGGAATCTTCTGCTT+TGG - chr1_3:59415889-59415908 None:intergenic 40.0%
TGATACAGACCATACCTCTT+AGG - chr1_3:59415991-59416010 None:intergenic 40.0%
!! AGTCACTGTTGATGATGTTG+TGG + chr1_3:59416250-59416269 Msa0129460:intron 40.0%
!! CTGTTGATGATGTTGTGGAA+AGG + chr1_3:59416255-59416274 Msa0129460:intron 40.0%
! TGTTGTGGAAAGGGTTTTTG+AGG + chr1_3:59416265-59416284 Msa0129460:intron 40.0%
!!! AAGGGTTTTTGAGGTCATAG+AGG + chr1_3:59416274-59416293 Msa0129460:intron 40.0%
!!! GTTTTTGAGGTCATAGAGGT+GGG + chr1_3:59416278-59416297 Msa0129460:intron 40.0%
!!! TTTTTGAGGTCATAGAGGTG+GGG + chr1_3:59416279-59416298 Msa0129460:intron 40.0%
GGTTCTTTCGCCTTATAATG+GGG - chr1_3:59416479-59416498 None:intergenic 40.0%
GTGGTTCTTTCGCCTTATAA+TGG - chr1_3:59416481-59416500 None:intergenic 40.0%
TGCATAAACAGGAGAACACA+AGG + chr1_3:59416800-59416819 Msa0129460:intron 40.0%
AGACACAATTGACCGTAATC+CGG + chr1_3:59416877-59416896 Msa0129460:intron 40.0%
TTTGCAGGATTGACAAACAC+AGG + chr1_3:59417037-59417056 Msa0129460:intron 40.0%
TTGCAGGATTGACAAACACA+GGG + chr1_3:59417038-59417057 Msa0129460:intron 40.0%
TGCACTTTACGTTGACCAAA+TGG + chr1_3:59417151-59417170 Msa0129460:CDS 40.0%
GCACTTTACGTTGACCAAAT+GGG + chr1_3:59417152-59417171 Msa0129460:CDS 40.0%
TGCTATGAGTAGATTAGACG+TGG + chr1_3:59417178-59417197 Msa0129460:CDS 40.0%
GACTCTAGTGATACTGAAGA+TGG + chr1_3:59417200-59417219 Msa0129460:CDS 40.0%
ATCCTTGAAGATTCTAGCAC+TGG + chr1_3:59417230-59417249 Msa0129460:CDS 40.0%
TTCCAGTGCTAGAATCTTCA+AGG - chr1_3:59417235-59417254 None:intergenic 40.0%
! TCATGTACTAGCAGTTGATG+AGG - chr1_3:59417323-59417342 None:intergenic 40.0%
CATCAACTGCTAGTACATGA+TGG + chr1_3:59417323-59417342 Msa0129460:CDS 40.0%
!!! GATGGTTCACTTTTTGTTGC+TGG + chr1_3:59417533-59417552 Msa0129460:CDS 40.0%
!! TACTAGATGGCTTTGATCAG+GGG - chr1_3:59417735-59417754 None:intergenic 40.0%
!! CTTACTAGATGGCTTTGATC+AGG - chr1_3:59417737-59417756 None:intergenic 40.0%
AGAGTCACTAGCAAATGTGA+CGG + chr1_3:59417910-59417929 Msa0129460:CDS 40.0%
CTGTAACTGGTGTATGTACA+AGG + chr1_3:59418035-59418054 Msa0129460:intron 40.0%
ATGTACAAGGTTCCGTTTGA+TGG + chr1_3:59418048-59418067 Msa0129460:intron 40.0%
ATGAAAAATCCAACCCATCG+TGG - chr1_3:59418126-59418145 None:intergenic 40.0%
GAATTAGTTGCAGGAACTAG+TGG + chr1_3:59418208-59418227 Msa0129460:CDS 40.0%
! TTTATGGTGCAGTTTGAAGC+GGG + chr1_3:59418366-59418385 Msa0129460:intron 40.0%
! CATATTGGGATGGCTCTATA+TGG + chr1_3:59418548-59418567 Msa0129460:intron 40.0%
! ACTGGCCATCTTATTTACTC+TGG + chr1_3:59418664-59418683 Msa0129460:CDS 40.0%
AGTTGGGATACTCAAAAGGA+GGG - chr1_3:59418763-59418782 None:intergenic 40.0%
AAGTTGGGATACTCAAAAGG+AGG - chr1_3:59418764-59418783 None:intergenic 40.0%
TTTATTGATACCCGTGGAGA+TGG + chr1_3:59419098-59419117 Msa0129460:CDS 40.0%
ACGTATGTCCCAAAGTTTGA+TGG - chr1_3:59419156-59419175 None:intergenic 40.0%
! AAGAGCATACCTGGTAACAT+TGG - chr1_3:59419189-59419208 None:intergenic 40.0%
! AAAGGCTAAAAGAGCATACC+TGG - chr1_3:59419198-59419217 None:intergenic 40.0%
!! GGTATGCTCTTTTAGCCTTT+TGG + chr1_3:59419198-59419217 Msa0129460:intron 40.0%
AACCATAAGTCTGTGACTGA+TGG + chr1_3:59419457-59419476 Msa0129460:intron 40.0%
ACCATAAGTCTGTGACTGAT+GGG + chr1_3:59419458-59419477 Msa0129460:intron 40.0%
TCCGAGCACACATTTCTATA+AGG + chr1_3:59419522-59419541 Msa0129460:intron 40.0%
GACACAGAATCATCGTTGAT+TGG - chr1_3:59419698-59419717 None:intergenic 40.0%
AGGAACAGACAACATTAGCT+AGG - chr1_3:59419761-59419780 None:intergenic 40.0%
! GAATTAGCTTAGTCTCGGAT+AGG - chr1_3:59419781-59419800 None:intergenic 40.0%
AATTTCAGTAACCGTGTTCG+TGG + chr1_3:59419852-59419871 Msa0129460:intron 40.0%
AACTCCTATATCCACGAACA+CGG - chr1_3:59419866-59419885 None:intergenic 40.0%
!!! GGAGTTTTGAATGGGATTAC+AGG + chr1_3:59419880-59419899 Msa0129460:CDS 40.0%
!! GTTTTGAATGGGATTACAGG+TGG + chr1_3:59419883-59419902 Msa0129460:CDS 40.0%
! TTCAAGTCTTTTGCTTGTGG+CGG - chr1_3:59419918-59419937 None:intergenic 40.0%
!! GCTTTTTCTCTCCAGCTTTT+AGG + chr1_3:59420003-59420022 Msa0129460:CDS 40.0%
TTTAGTGGTCACCTAAAAGC+TGG - chr1_3:59420017-59420036 None:intergenic 40.0%
!! CTTTTAGGTGACCACTAAAC+TGG + chr1_3:59420018-59420037 Msa0129460:intron 40.0%
AAAAGGTAAGGCCAGTTTAG+TGG - chr1_3:59420032-59420051 None:intergenic 40.0%
! GGCCAGAAGTATATCTATAC+TGG + chr1_3:59420198-59420217 Msa0129460:CDS 40.0%
AATCTATAACTAGGGGGAAG+AGG + chr1_3:59420324-59420343 Msa0129460:intron 40.0%
ATCTATAACTAGGGGGAAGA+GGG + chr1_3:59420325-59420344 Msa0129460:intron 40.0%
TCTCCTTGAACTTTGATTCC+TGG + chr1_3:59420645-59420664 Msa0129460:intron 40.0%
GATGATTCATTACAGGTGAG+TGG + chr1_3:59420818-59420837 Msa0129460:intron 40.0%
CACCTGTAAGAGATTGTAGT+TGG + chr1_3:59420873-59420892 Msa0129460:CDS 40.0%
TGCCAACTACAATCTCTTAC+AGG - chr1_3:59420878-59420897 None:intergenic 40.0%
AAGAAGAGCTAACGAGCATA+GGG - chr1_3:59420910-59420929 None:intergenic 40.0%
! TATGCTCGTTAGCTCTTCTT+GGG + chr1_3:59420910-59420929 Msa0129460:CDS 40.0%
GGGATGGAGATGTTGTAAAA+TGG + chr1_3:59420930-59420949 Msa0129460:CDS 40.0%
GTTGTAAAATGGCAATCTGC+TGG + chr1_3:59420941-59420960 Msa0129460:CDS 40.0%
ACAGACCATACCTCTTAGGA+TGG - chr1_3:59415987-59416006 None:intergenic 45.0%
!!! GGTTTTTGAGGTCATAGAGG+TGG + chr1_3:59416277-59416296 Msa0129460:intron 45.0%
ACGACTGAAAAGAAGTGGCT+TGG + chr1_3:59416336-59416355 Msa0129460:intron 45.0%
CGACTGAAAAGAAGTGGCTT+GGG + chr1_3:59416337-59416356 Msa0129460:intron 45.0%
AAAACAGGTTCATGGGACCA+AGG - chr1_3:59416414-59416433 None:intergenic 45.0%
! CTTTCGCCTTATAATGGGGA+TGG - chr1_3:59416475-59416494 None:intergenic 45.0%
!! AGTTTGTTGGGCTTCAACTG+CGG + chr1_3:59416642-59416661 Msa0129460:intron 45.0%
GACACAATTGACCGTAATCC+GGG + chr1_3:59416878-59416897 Msa0129460:intron 45.0%
TGCAGGATTGACAAACACAG+GGG + chr1_3:59417039-59417058 Msa0129460:intron 45.0%
!! TAGTACATGATGGGTCTGGA+AGG + chr1_3:59417333-59417352 Msa0129460:CDS 45.0%
GTCCTGAACAATTGGATTCG+CGG - chr1_3:59417397-59417416 None:intergenic 45.0%
GCGAATCCAATTGTTCAGGA+CGG + chr1_3:59417396-59417415 Msa0129460:CDS 45.0%
CGAATCCAATTGTTCAGGAC+GGG + chr1_3:59417397-59417416 Msa0129460:CDS 45.0%
GAATCCAATTGTTCAGGACG+GGG + chr1_3:59417398-59417417 Msa0129460:CDS 45.0%
CAAAAGATGACAGCGATCAG+CGG - chr1_3:59417435-59417454 None:intergenic 45.0%
ATAGGCCAAGGACCATTTAC+AGG - chr1_3:59417470-59417489 None:intergenic 45.0%
! GTGTCTCAGTTTTCAGCTGA+TGG + chr1_3:59417515-59417534 Msa0129460:CDS 45.0%
! ACTTTTTGTTGCTGGGTTCC+AGG + chr1_3:59417541-59417560 Msa0129460:CDS 45.0%
AATATGCAGGAGATCCACGA+TGG + chr1_3:59418109-59418128 Msa0129460:intron 45.0%
ATATGCAGGAGATCCACGAT+GGG + chr1_3:59418110-59418129 Msa0129460:intron 45.0%
! GACGATGGAGGATACTCTTT+TGG + chr1_3:59418151-59418170 Msa0129460:CDS 45.0%
!! GCTTCGAATTTTAGCGCACA+CGG + chr1_3:59418273-59418292 Msa0129460:CDS 45.0%
!! GTTTTGATGGGACACCTTGA+GGG + chr1_3:59419068-59419087 Msa0129460:CDS 45.0%
TGAAATAGCGTCCATCTCCA+CGG - chr1_3:59419112-59419131 None:intergenic 45.0%
ACCCATCAGTCACAGACTTA+TGG - chr1_3:59419462-59419481 None:intergenic 45.0%
! AAGTCTGTGACTGATGGGTA+TGG + chr1_3:59419463-59419482 Msa0129460:intron 45.0%
TTTGTGTCAGCTTGTCTGTC+TGG + chr1_3:59419720-59419739 Msa0129460:intron 45.0%
GTAACCGTGTTCGTGGATAT+AGG + chr1_3:59419859-59419878 Msa0129460:intron 45.0%
TGAATGGGATTACAGGTGGA+TGG + chr1_3:59419887-59419906 Msa0129460:CDS 45.0%
! TCAAGTCTTTTGCTTGTGGC+GGG - chr1_3:59419917-59419936 None:intergenic 45.0%
TCATCCTTGTGATCAGTCAG+TGG + chr1_3:59419938-59419957 Msa0129460:CDS 45.0%
! CAAGAGTGCGTAAGACTGAA+TGG - chr1_3:59419977-59419996 None:intergenic 45.0%
AAGCTGGAGAGAAAAAGCAG+CGG - chr1_3:59420001-59420020 None:intergenic 45.0%
AGGCCAGGAATCAAAGTTCA+AGG - chr1_3:59420651-59420670 None:intergenic 45.0%
CAAGAAGAGCTAACGAGCAT+AGG - chr1_3:59420911-59420930 None:intergenic 45.0%
! CTATGCTCGTTAGCTCTTCT+TGG + chr1_3:59420909-59420928 Msa0129460:CDS 45.0%
!!! TAATTTATTTATCATTTTTA+TGG + chr1_3:59418513-59418532 Msa0129460:intron 5.0%
GGAGCTTCGTAGAACAAGTG+TGG - chr1_3:59416500-59416519 None:intergenic 50.0%
! GTAGGTCGCTCGAGTTTGTT+GGG + chr1_3:59416630-59416649 Msa0129460:intron 50.0%
! GTTTGTTGGGCTTCAACTGC+GGG + chr1_3:59416643-59416662 Msa0129460:intron 50.0%
!! CTGCTAGTACATGATGGGTC+TGG + chr1_3:59417329-59417348 Msa0129460:CDS 50.0%
GAAAGAGTTGCCTGTTTCCC+CGG + chr1_3:59417355-59417374 Msa0129460:CDS 50.0%
CGACTAGGCATTTGGTCGAT+AGG - chr1_3:59417488-59417507 None:intergenic 50.0%
CGTATGCTCGACTAGGCATT+TGG - chr1_3:59417496-59417515 None:intergenic 50.0%
TGAGACACGTATGCTCGACT+AGG - chr1_3:59417503-59417522 None:intergenic 50.0%
GTGTACGATAGGTGACATGC+TGG - chr1_3:59417864-59417883 None:intergenic 50.0%
GATGGGAGGGAATTAGTTGC+AGG + chr1_3:59418199-59418218 Msa0129460:CDS 50.0%
GTTCTTTCCCTCTGGACTTC+AGG + chr1_3:59418966-59418985 Msa0129460:intron 50.0%
! TTCCCTCTGGACTTCAGGTT+AGG + chr1_3:59418971-59418990 Msa0129460:intron 50.0%
! TCCCTCTGGACTTCAGGTTA+GGG + chr1_3:59418972-59418991 Msa0129460:intron 50.0%
TCCCTAACCTGAAGTCCAGA+GGG - chr1_3:59418976-59418995 None:intergenic 50.0%
AATGCTAAAGACAAGCCGGC+AGG + chr1_3:59419044-59419063 Msa0129460:CDS 50.0%
ATGCTAAAGACAAGCCGGCA+GGG + chr1_3:59419045-59419064 Msa0129460:CDS 50.0%
!! GGTTTTGATGGGACACCTTG+AGG + chr1_3:59419067-59419086 Msa0129460:CDS 50.0%
GAAATAGCGTCCATCTCCAC+GGG - chr1_3:59419111-59419130 None:intergenic 50.0%
! TGCTAGAGCACTTCTGCTGA+TGG + chr1_3:59419283-59419302 Msa0129460:intron 50.0%
! GCTAGAGCACTTCTGCTGAT+GGG + chr1_3:59419284-59419303 Msa0129460:intron 50.0%
! GTAGCCACTGACTGATCACA+AGG - chr1_3:59419945-59419964 None:intergenic 50.0%
CAGTCAGTGGCTACGTATAG+AGG + chr1_3:59419951-59419970 Msa0129460:CDS 50.0%
TATAACTAGGGGGAAGAGGG+AGG + chr1_3:59420328-59420347 Msa0129460:intron 50.0%
CTAACGAGCATAGGGTGGAA+AGG - chr1_3:59420902-59420921 None:intergenic 50.0%
AAGAGCTAACGAGCATAGGG+TGG - chr1_3:59420907-59420926 None:intergenic 50.0%
! CTCGTTAGCTCTTCTTGGGA+TGG + chr1_3:59420914-59420933 Msa0129460:CDS 50.0%
! ATCTGCTGGGAGCTCTGATA+TGG + chr1_3:59420955-59420974 Msa0129460:CDS 50.0%
! AGCCTCGTCGGTTAAGAAGA+GGG + chr1_3:59420979-59420998 Msa0129460:CDS 50.0%
TACCCTCTTCTTAACCGACG+AGG - chr1_3:59420984-59421003 None:intergenic 50.0%
GGTAGGTCGCTCGAGTTTGT+TGG + chr1_3:59416629-59416648 Msa0129460:intron 55.0%
AGCATCTTCACCGGGGAAAC+AGG - chr1_3:59417368-59417387 None:intergenic 55.0%
TGTTTCCCCGGTGAAGATGC+TGG + chr1_3:59417367-59417386 Msa0129460:CDS 55.0%
GGCCGCGAATCCAATTGTTC+AGG + chr1_3:59417392-59417411 Msa0129460:CDS 55.0%
CCTTCCCCGTCCTGAACAAT+TGG - chr1_3:59417405-59417424 None:intergenic 55.0%
CCAATTGTTCAGGACGGGGA+AGG + chr1_3:59417402-59417421 Msa0129460:CDS 55.0%
GGCATTTGGTCGATAGGCCA+AGG - chr1_3:59417482-59417501 None:intergenic 55.0%
! ATGGTGCAGTTTGAAGCGGG+TGG + chr1_3:59418369-59418388 Msa0129460:intron 55.0%
GTCCCTAACCTGAAGTCCAG+AGG - chr1_3:59418977-59418996 None:intergenic 55.0%
TGCTAAAGACAAGCCGGCAG+GGG + chr1_3:59419046-59419065 Msa0129460:CDS 55.0%
!! AAGCCGGCAGGGGTTTTGAT+GGG + chr1_3:59419056-59419075 Msa0129460:CDS 55.0%
TGTCCCATCAAAACCCCTGC+CGG - chr1_3:59419062-59419081 None:intergenic 55.0%
TTCGGTTATGAACAGCGGCG+AGG - chr1_3:59420671-59420690 None:intergenic 55.0%
CTCTGATATGGCAGCCTCGT+CGG + chr1_3:59420967-59420986 Msa0129460:CDS 55.0%
! CAGCCTCGTCGGTTAAGAAG+AGG + chr1_3:59420978-59420997 Msa0129460:CDS 55.0%
GCAGGAGATCCACGATGGGT+TGG + chr1_3:59418114-59418133 Msa0129460:intron 60.0%
!! CAAGCCGGCAGGGGTTTTGA+TGG + chr1_3:59419055-59419074 Msa0129460:CDS 60.0%
CTAGGGGGAAGAGGGAGGAT+AGG + chr1_3:59420333-59420352 Msa0129460:intron 60.0%
TTATGAACAGCGGCGAGGCC+AGG - chr1_3:59420666-59420685 None:intergenic 60.0%
TCCCCGGTGAAGATGCTGGC+AGG + chr1_3:59417371-59417390 Msa0129460:CDS 65.0%
GCCTGCCAGCATCTTCACCG+GGG - chr1_3:59417375-59417394 None:intergenic 65.0%
GGCCTGCCAGCATCTTCACC+GGG - chr1_3:59417376-59417395 None:intergenic 65.0%
CGGCCTGCCAGCATCTTCAC+CGG - chr1_3:59417377-59417396 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59415809 59421196 59415809 ID=Msa0129460;Name=Msa0129460
chr1_3 mRNA 59415809 59421196 59415809 ID=Msa0129460-mRNA-1;Parent=Msa0129460;Name=Msa0129460-mRNA-1;_AED=0.14;_eAED=0.14;_QI=277|1|1|1|0.88|0.8|10|160|495
chr1_3 exon 59415809 59415995 59415809 ID=Msa0129460-mRNA-1:exon:19339;Parent=Msa0129460-mRNA-1
chr1_3 exon 59417044 59417562 59417044 ID=Msa0129460-mRNA-1:exon:19340;Parent=Msa0129460-mRNA-1
chr1_3 exon 59417632 59417751 59417632 ID=Msa0129460-mRNA-1:exon:19341;Parent=Msa0129460-mRNA-1
chr1_3 exon 59417854 59417931 59417854 ID=Msa0129460-mRNA-1:exon:19342;Parent=Msa0129460-mRNA-1
chr1_3 exon 59418118 59418294 59418118 ID=Msa0129460-mRNA-1:exon:19343;Parent=Msa0129460-mRNA-1
chr1_3 exon 59418631 59418708 59418631 ID=Msa0129460-mRNA-1:exon:19344;Parent=Msa0129460-mRNA-1
chr1_3 exon 59419023 59419198 59419023 ID=Msa0129460-mRNA-1:exon:19345;Parent=Msa0129460-mRNA-1
chr1_3 exon 59419860 59420024 59419860 ID=Msa0129460-mRNA-1:exon:19346;Parent=Msa0129460-mRNA-1
chr1_3 exon 59420194 59420254 59420194 ID=Msa0129460-mRNA-1:exon:19347;Parent=Msa0129460-mRNA-1
chr1_3 exon 59420833 59421196 59420833 ID=Msa0129460-mRNA-1:exon:19348;Parent=Msa0129460-mRNA-1
chr1_3 five_prime_UTR 59415809 59415995 59415809 ID=Msa0129460-mRNA-1:five_prime_utr;Parent=Msa0129460-mRNA-1
chr1_3 five_prime_UTR 59417044 59417133 59417044 ID=Msa0129460-mRNA-1:five_prime_utr;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59417134 59417562 59417134 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59417632 59417751 59417632 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59417854 59417931 59417854 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59418118 59418294 59418118 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59418631 59418708 59418631 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59419023 59419198 59419023 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59419860 59420024 59419860 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59420194 59420254 59420194 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 CDS 59420833 59421036 59420833 ID=Msa0129460-mRNA-1:cds;Parent=Msa0129460-mRNA-1
chr1_3 three_prime_UTR 59421037 59421196 59421037 ID=Msa0129460-mRNA-1:three_prime_utr;Parent=Msa0129460-mRNA-1
Gene Sequence

>Msa0129460

ATGTACGCTATATCTGGTGCACTTTACGTTGACCAAATGGGTTATGCTATGAGTAGATTAGACGTGGACTCTAGTGATACTGAAGATGGAAATGCAATCCTTGAAGATTCTAGCACTGGAAAATCTAAAAAGGCATTTGAAAATTTAGACAATGAAATTGCTCAGATAACCAAGTTGAAATCAACACCTCATCAACTGCTAGTACATGATGGGTCTGGAAGGAAAGAGTTGCCTGTTTCCCCGGTGAAGATGCTGGCAGGCCGCGAATCCAATTGTTCAGGACGGGGAAGGTTTTCTTCCGCTGATCGCTGTCATCTTTTGAGCAGATATTTACCTGTAAATGGTCCTTGGCCTATCGACCAAATGCCTAGTCGAGCATACGTGTCTCAGTTTTCAGCTGATGGTTCACTTTTTGTTGCTGGGTTCCAGGGAAACCACATAAAAATATACAATGTGGACAAAGGTTGGAAAGTTCAAAAAAACATTCTAACTAAGAGTTTGAGATGGACAATCACTGATACTTCTCTTTCCCCTGATCAAAGCCATCTAGTTTATGCCAGCATGTCACCTATCGTACACATTGTAAATGTTGGATCTTCTGAGACAGAGTCACTAGCAAATGTGACGGAGATCCACGATGGGTTGGATTTTTCATCAAATGACGATGGAGGATACTCTTTTGGAATTTTCTCTGTGAAATTTTCAACAGATGGGAGGGAATTAGTTGCAGGAACTAGTGGCGATTCTATATATGTATATGATCTTGAAACAAATAAGGTTTCGCTTCGAATTTTAGCGCACACGGCTGATGTAAACACCGTATGTTTTGCTGATGAAACTGGCCATCTTATTTACTCTGGAAGTGATGATAGTTTCTGCAAGGTCTGGGATCGTCGTTGCTTAAATGCTAAAGACAAGCCGGCAGGGGTTTTGATGGGACACCTTGAGGGCATTACATTTATTGATACCCGTGGAGATGGACGCTATTTCATTTCAAACGGTAAAGATCAGACCATCAAACTTTGGGACATACGTAAAATGTCATCCAATGTTACCAGTAACCGTGTTCGTGGATATAGGAGTTTTGAATGGGATTACAGGTGGATGGATTACCCGCCACAAGCAAAAGACTTGAATCATCCTTGTGATCAGTCAGTGGCTACGTATAGAGGCCATTCAGTCTTACGCACTCTTGTCCGCTGCTTTTTCTCTCCAGCTTTTAGCACTGGCCAGAAGTATATCTATACTGGATCACACAATGCATGTGTTTATGTATATGATTTGGTGAGTGGAGCACAAGTTGCAACATTGAAGCACCATAAATCACCTGTAAGAGATTGTAGTTGGCATCCTTTCCACCCTATGCTCGTTAGCTCTTCTTGGGATGGAGATGTTGTAAAATGGCAATCTGCTGGGAGCTCTGATATGGCAGCCTCGTCGGTTAAGAAGAGGGTATACAAAAGACATTTTTATGAAAATTACCTATGA

Protein sequence

>Msa0129460

MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDSSTGKSKKAFENLDNEIAQITKLKSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPIDQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVDKGWKVQKNILTKSLRWTITDTSLSPDQSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSVKFSTDGRELVAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKVWDRRCLNAKDKPAGVLMGHLEGITFIDTRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNRVRGYRSFEWDYRWMDYPPQAKDLNHPCDQSVATYRGHSVLRTLVRCFFSPAFSTGQKYIYTGSHNACVYVYDLVSGAQVATLKHHKSPVRDCSWHPFHPMLVSSSWDGDVVKWQSAGSSDMAASSVKKRVYKRHFYENYL*