Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083030 | sp|O24467|LE14B_PRUAR | 70.833 | 456 | 128 | 3 | 18 | 472 | 5 | 456 | 0.0 | 667 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083030 | G7I2T4 | 98.788 | 495 | 6 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1020 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0034490 | Msa0083030 | 0.850853 | 1.298297e-60 | -8.615850e-47 |
Msa0083030 | Msa0129460 | 0.954100 | 6.308434e-112 | -8.615850e-47 |
Msa0083030 | Msa1416350 | 0.963293 | 6.581303e-122 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083030 | MtrunA17_Chr1g0196321 | 98.788 | 495 | 6 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1020 |
Msa0083030 | MtrunA17_Chr2g0286731 | 69.954 | 436 | 127 | 2 | 49 | 484 | 32 | 463 | 0.0 | 645 |
Msa0083030 | MtrunA17_Chr7g0253861 | 23.297 | 279 | 143 | 7 | 224 | 465 | 96 | 340 | 1.81e-16 | 80.9 |
Msa0083030 | MtrunA17_Chr4g0067151 | 26.800 | 250 | 164 | 6 | 224 | 464 | 76 | 315 | 9.30e-16 | 78.2 |
Msa0083030 | MtrunA17_Chr1g0185501 | 25.311 | 241 | 137 | 5 | 224 | 464 | 109 | 306 | 2.40e-15 | 77.0 |
Msa0083030 | MtrunA17_Chr3g0093681 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 2.67e-13 | 72.4 |
Msa0083030 | MtrunA17_Chr1g0172501 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 8.98e-13 | 70.5 |
Msa0083030 | MtrunA17_Chr6g0448921 | 30.667 | 150 | 93 | 3 | 224 | 373 | 57 | 195 | 9.18e-13 | 70.9 |
Msa0083030 | MtrunA17_Chr5g0405851 | 31.933 | 119 | 77 | 1 | 224 | 342 | 335 | 449 | 3.68e-11 | 65.1 |
Msa0083030 | MtrunA17_Chr8g0352821 | 23.554 | 242 | 135 | 7 | 229 | 468 | 228 | 421 | 5.28e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0083030 | AT4G03020.1 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0083030 | AT4G03020.2 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0083030 | AT4G03020.3 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
Msa0083030 | AT2G43770.1 | 23.843 | 281 | 139 | 6 | 224 | 465 | 94 | 338 | 4.46e-18 | 85.9 |
Msa0083030 | AT3G49660.1 | 24.542 | 273 | 181 | 7 | 208 | 468 | 53 | 312 | 3.99e-15 | 76.6 |
Msa0083030 | AT4G02730.1 | 26.141 | 241 | 125 | 7 | 224 | 459 | 126 | 318 | 7.46e-12 | 67.0 |
Msa0083030 | AT1G11160.1 | 24.696 | 247 | 138 | 7 | 224 | 469 | 56 | 255 | 1.27e-11 | 67.8 |
Msa0083030 | AT1G11160.2 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.28e-11 | 67.8 |
Msa0083030 | AT1G11160.4 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.37e-11 | 67.8 |
Msa0083030 | AT1G11160.3 | 24.696 | 247 | 138 | 6 | 224 | 469 | 14 | 213 | 1.50e-11 | 67.4 |
Msa0083030 | AT5G08390.1 | 29.333 | 150 | 95 | 3 | 224 | 373 | 57 | 195 | 2.26e-11 | 67.0 |
Msa0083030 | AT1G61210.3 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 5.07e-11 | 65.9 |
Msa0083030 | AT1G61210.1 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 7.89e-11 | 65.5 |
Msa0083030 | AT1G61210.2 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 8.10e-11 | 65.5 |
Msa0083030 | AT5G23430.3 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.37e-11 | 65.1 |
Msa0083030 | AT5G23430.2 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.37e-11 | 65.1 |
Msa0083030 | AT5G23430.1 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.45e-11 | 65.1 |
Find 120 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCTTCTGCTTTGGGTAAT+TGG | 0.178793 | 1_2:-62006461 | None:intergenic |
AATCTCTTACAGGTGATTTA+TGG | 0.181919 | 1_2:-62011433 | None:intergenic |
ATGTGCAAATTGTTACAAAA+AGG | 0.220757 | 1_2:-62006499 | None:intergenic |
CTATGCTCGTTAGCTCTTCT+TGG | 0.255220 | 1_2:+62011477 | Msa0083030:CDS |
AGCAGATATTTACCTGTAAA+TGG | 0.272385 | 1_2:+62008020 | Msa0083030:CDS |
ATATGATCTTGAAACAAATA+AGG | 0.306324 | 1_2:+62008811 | Msa0083030:CDS |
TAGCACTGGAAAATCTAAAA+AGG | 0.311940 | 1_2:+62007809 | Msa0083030:CDS |
ATATGGTGTTTGACATAATA+AGG | 0.315445 | 1_2:+62011674 | Msa0083030:three_prime_UTR |
GACGATGGAGGATACTCTTT+TGG | 0.318718 | 1_2:+62008716 | Msa0083030:CDS |
TTCATGGAATCTTCTGCTTT+GGG | 0.326986 | 1_2:-62006468 | None:intergenic |
GTTCATGGAATCTTCTGCTT+TGG | 0.330166 | 1_2:-62006469 | None:intergenic |
CCTTCCCCGTCCTGAACAAT+TGG | 0.339582 | 1_2:-62007967 | None:intergenic |
GTTGATATTGAAGTTGTATA+TGG | 0.348324 | 1_2:+62011657 | Msa0083030:three_prime_UTR |
TTTAAATAGCTCAGATGCTT+TGG | 0.350837 | 1_2:+62007641 | Msa0083030:five_prime_UTR |
AGCATCTTCACCGGGGAAAC+AGG | 0.359807 | 1_2:-62007930 | None:intergenic |
ACGTATGTCCCAAAGTTTGA+TGG | 0.361310 | 1_2:-62009721 | None:intergenic |
TGCACTTTACGTTGACCAAA+TGG | 0.380038 | 1_2:+62007716 | Msa0083030:CDS |
TGCCAACTACAATCTCTTAC+AGG | 0.382540 | 1_2:-62011443 | None:intergenic |
TTCCAGTGCTAGAATCTTCA+AGG | 0.382938 | 1_2:-62007797 | None:intergenic |
ATAGTTATGTACGCTATATC+TGG | 0.384746 | 1_2:+62007693 | Msa0083030:exon |
ACTGATTTAACTGACATCAT+AGG | 0.385029 | 1_2:-62011598 | None:intergenic |
CTTACTAGATGGCTTTGATC+AGG | 0.388290 | 1_2:-62008299 | None:intergenic |
ATCTGCTGGGAGCTCTGATA+TGG | 0.391469 | 1_2:+62011523 | Msa0083030:CDS |
GGCCAGAAGTATATCTATAC+TGG | 0.393179 | 1_2:+62010766 | Msa0083030:CDS |
ATCCAGTATAGATATACTTC+TGG | 0.402582 | 1_2:-62010768 | None:intergenic |
TGATACAGACCATACCTCTT+AGG | 0.407084 | 1_2:-62006571 | None:intergenic |
ATAGGCCAAGGACCATTTAC+AGG | 0.415805 | 1_2:-62008032 | None:intergenic |
GGCCGCGAATCCAATTGTTC+AGG | 0.416503 | 1_2:+62007957 | Msa0083030:CDS |
CGTATGCTCGACTAGGCATT+TGG | 0.426545 | 1_2:-62008058 | None:intergenic |
TACTCATAGCATAACCCATT+TGG | 0.431168 | 1_2:-62007731 | None:intergenic |
AGATCAGACCATCAAACTTT+GGG | 0.433353 | 1_2:+62009713 | Msa0083030:CDS |
GGGATGGAGATGTTGTAAAA+TGG | 0.435817 | 1_2:+62011498 | Msa0083030:CDS |
AAGATCAGACCATCAAACTT+TGG | 0.439366 | 1_2:+62009712 | Msa0083030:CDS |
TATGCTCGTTAGCTCTTCTT+GGG | 0.443104 | 1_2:+62011478 | Msa0083030:CDS |
GATGGGAGGGAATTAGTTGC+AGG | 0.457956 | 1_2:+62008764 | Msa0083030:CDS |
AATTTCAGTAACCGTGTTCG+TGG | 0.462360 | 1_2:+62010420 | Msa0083030:intron |
ATGTGTTTATGTATATGATT+TGG | 0.470295 | 1_2:+62010801 | Msa0083030:CDS |
ATCGTACACATTGTAAATGT+TGG | 0.472091 | 1_2:+62008440 | Msa0083030:CDS |
ATTTACCTGTAAATGGTCCT+TGG | 0.479935 | 1_2:+62008027 | Msa0083030:CDS |
CGGCCTGCCAGCATCTTCAC+CGG | 0.481898 | 1_2:-62007939 | None:intergenic |
CAGTCAGTGGCTACGTATAG+AGG | 0.482615 | 1_2:+62010519 | Msa0083030:CDS |
GCACTTTACGTTGACCAAAT+GGG | 0.482739 | 1_2:+62007717 | Msa0083030:CDS |
CGAATCCAATTGTTCAGGAC+GGG | 0.482995 | 1_2:+62007962 | Msa0083030:CDS |
ATCCTTGAAGATTCTAGCAC+TGG | 0.486362 | 1_2:+62007795 | Msa0083030:CDS |
TCCCCGGTGAAGATGCTGGC+AGG | 0.486810 | 1_2:+62007936 | Msa0083030:CDS |
CTCGTTAGCTCTTCTTGGGA+TGG | 0.489305 | 1_2:+62011482 | Msa0083030:CDS |
TGAATGGGATTACAGGTGGA+TGG | 0.490487 | 1_2:+62010455 | Msa0083030:CDS |
GTCCTGAACAATTGGATTCG+CGG | 0.491213 | 1_2:-62007959 | None:intergenic |
ATTATTTATGTACAAGATTG+TGG | 0.493007 | 1_2:-62011711 | None:intergenic |
ACTGGCCATCTTATTTACTC+TGG | 0.494750 | 1_2:+62009229 | Msa0083030:CDS |
GAAAGAGTTGCCTGTTTCCC+CGG | 0.495375 | 1_2:+62007920 | Msa0083030:CDS |
TATACAATGTGGACAAAGGT+TGG | 0.499477 | 1_2:+62008213 | Msa0083030:CDS |
CTGCTAGTACATGATGGGTC+TGG | 0.500073 | 1_2:+62007894 | Msa0083030:CDS |
TTACTAGATGGCTTTGATCA+GGG | 0.501289 | 1_2:-62008298 | None:intergenic |
CTCTGATATGGCAGCCTCGT+CGG | 0.501439 | 1_2:+62011535 | Msa0083030:CDS |
GGACGCTATTTCATTTCAAA+CGG | 0.501559 | 1_2:+62009687 | Msa0083030:CDS |
CATCAACTGCTAGTACATGA+TGG | 0.505267 | 1_2:+62007888 | Msa0083030:CDS |
CAAGAAGAGCTAACGAGCAT+AGG | 0.505730 | 1_2:-62011476 | None:intergenic |
CACCTGTAAGAGATTGTAGT+TGG | 0.509483 | 1_2:+62011441 | Msa0083030:CDS |
TGTCCCATCAAAACCCCTGC+CGG | 0.512728 | 1_2:-62009627 | None:intergenic |
GTAACCGTGTTCGTGGATAT+AGG | 0.517492 | 1_2:+62010427 | Msa0083030:intron |
CCAATTGTTCAGGACGGGGA+AGG | 0.517976 | 1_2:+62007967 | Msa0083030:CDS |
TGTTTCCCCGGTGAAGATGC+TGG | 0.519063 | 1_2:+62007932 | Msa0083030:CDS |
AATGCTAAAGACAAGCCGGC+AGG | 0.520946 | 1_2:+62009612 | Msa0083030:CDS |
TTTATTGATACCCGTGGAGA+TGG | 0.521044 | 1_2:+62009666 | Msa0083030:CDS |
TTTAGTGGTCACCTAAAAGC+TGG | 0.522377 | 1_2:-62010582 | None:intergenic |
CAATAAATGTAATGCCCTCA+AGG | 0.532155 | 1_2:-62009650 | None:intergenic |
AAGAGCATACCTGGTAACAT+TGG | 0.534358 | 1_2:-62009754 | None:intergenic |
GTTGTAAAATGGCAATCTGC+TGG | 0.535124 | 1_2:+62011509 | Msa0083030:CDS |
TGCTAAAGACAAGCCGGCAG+GGG | 0.535291 | 1_2:+62009614 | Msa0083030:CDS |
GACTCTAGTGATACTGAAGA+TGG | 0.540581 | 1_2:+62007765 | Msa0083030:CDS |
CAAGAGTGCGTAAGACTGAA+TGG | 0.543044 | 1_2:-62010542 | None:intergenic |
GATGATTCATTACAGGTGAG+TGG | 0.544157 | 1_2:+62011386 | Msa0083030:intron |
CGACTAGGCATTTGGTCGAT+AGG | 0.547791 | 1_2:-62008050 | None:intergenic |
TACTAGATGGCTTTGATCAG+GGG | 0.548826 | 1_2:-62008297 | None:intergenic |
GCAGGAGATCCACGATGGGT+TGG | 0.550911 | 1_2:+62008679 | Msa0083030:intron |
GGCCTGCCAGCATCTTCACC+GGG | 0.553632 | 1_2:-62007938 | None:intergenic |
AAGAAGAGCTAACGAGCATA+GGG | 0.554781 | 1_2:-62011475 | None:intergenic |
ATGCTAAAGACAAGCCGGCA+GGG | 0.560101 | 1_2:+62009613 | Msa0083030:CDS |
CACTTCCAGAGTAAATAAGA+TGG | 0.565103 | 1_2:-62009234 | None:intergenic |
TTTGCAGGATTGACAAACAC+AGG | 0.573696 | 1_2:+62007602 | Msa0083030:intron |
CTTAAATGCTAAAGACAAGC+CGG | 0.577168 | 1_2:+62009608 | Msa0083030:CDS |
ACATTTACAATGTGTACGAT+AGG | 0.581114 | 1_2:-62008437 | None:intergenic |
ATCAACTGCTAGTACATGAT+GGG | 0.581257 | 1_2:+62007889 | Msa0083030:CDS |
TTGTAAAATGGCAATCTGCT+GGG | 0.586915 | 1_2:+62011510 | Msa0083030:CDS |
ACAGACCATACCTCTTAGGA+TGG | 0.590479 | 1_2:-62006567 | None:intergenic |
GAAATAGCGTCCATCTCCAC+GGG | 0.592069 | 1_2:-62009676 | None:intergenic |
TGAAATAGCGTCCATCTCCA+CGG | 0.592795 | 1_2:-62009677 | None:intergenic |
ATGAGGTGTTGATTTCAACT+TGG | 0.593854 | 1_2:-62007868 | None:intergenic |
AAATGTCATCCAATGTTACC+AGG | 0.595793 | 1_2:+62009745 | Msa0083030:CDS |
AAAATATACAATGTGGACAA+AGG | 0.599948 | 1_2:+62008209 | Msa0083030:CDS |
AGCCTCGTCGGTTAAGAAGA+GGG | 0.600390 | 1_2:+62011547 | Msa0083030:CDS |
CAGCCTCGTCGGTTAAGAAG+AGG | 0.601348 | 1_2:+62011546 | Msa0083030:CDS |
GAATTAGTTGCAGGAACTAG+TGG | 0.606878 | 1_2:+62008773 | Msa0083030:CDS |
TTCTAACTAAGAGTTTGAGA+TGG | 0.609877 | 1_2:+62008252 | Msa0083030:CDS |
CTAACGAGCATAGGGTGGAA+AGG | 0.614104 | 1_2:-62011467 | None:intergenic |
TAGTACATGATGGGTCTGGA+AGG | 0.615748 | 1_2:+62007898 | Msa0083030:CDS |
GCGAATCCAATTGTTCAGGA+CGG | 0.617169 | 1_2:+62007961 | Msa0083030:CDS |
TTGCAGGATTGACAAACACA+GGG | 0.622055 | 1_2:+62007603 | Msa0083030:intron |
TGAGACACGTATGCTCGACT+AGG | 0.624491 | 1_2:-62008065 | None:intergenic |
AACTCCTATATCCACGAACA+CGG | 0.626589 | 1_2:-62010431 | None:intergenic |
GGCATTTGGTCGATAGGCCA+AGG | 0.629750 | 1_2:-62008044 | None:intergenic |
GAATCCAATTGTTCAGGACG+GGG | 0.630776 | 1_2:+62007963 | Msa0083030:CDS |
AGTTTCATCAGCAAAACATA+CGG | 0.631088 | 1_2:-62009209 | None:intergenic |
GTGTACGATAGGTGACATGC+TGG | 0.632627 | 1_2:-62008426 | None:intergenic |
TGCTATGAGTAGATTAGACG+TGG | 0.632706 | 1_2:+62007743 | Msa0083030:CDS |
AAGAGCTAACGAGCATAGGG+TGG | 0.635204 | 1_2:-62011472 | None:intergenic |
TCATGTACTAGCAGTTGATG+AGG | 0.637096 | 1_2:-62007885 | None:intergenic |
ATTACATTTATTGATACCCG+TGG | 0.637357 | 1_2:+62009660 | Msa0083030:CDS |
CAAAAGATGACAGCGATCAG+CGG | 0.644029 | 1_2:-62007997 | None:intergenic |
AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | 1_2:+62009252 | Msa0083030:CDS |
AATATGCAGGAGATCCACGA+TGG | 0.665955 | 1_2:+62008674 | Msa0083030:intron |
TCATCCTTGTGATCAGTCAG+TGG | 0.674274 | 1_2:+62010506 | Msa0083030:CDS |
GTAGCCACTGACTGATCACA+AGG | 0.680555 | 1_2:-62010510 | None:intergenic |
CATAACTATTCAAATCAACA+CGG | 0.685486 | 1_2:-62007679 | None:intergenic |
ATATGCAGGAGATCCACGAT+GGG | 0.686383 | 1_2:+62008675 | Msa0083030:intron |
AGAGTCACTAGCAAATGTGA+CGG | 0.704087 | 1_2:+62008475 | Msa0083030:CDS |
TACCCTCTTCTTAACCGACG+AGG | 0.713771 | 1_2:-62011549 | None:intergenic |
GCCTGCCAGCATCTTCACCG+GGG | 0.715871 | 1_2:-62007937 | None:intergenic |
TGCAGGATTGACAAACACAG+GGG | 0.738451 | 1_2:+62007604 | Msa0083030:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTAAATTAATTTATTTTTC+AGG | + | chr1_2:62008175-62008194 | Msa0083030:intron | 10.0% |
!!! | CTAAATTAATTTATTTTTCA+GGG | + | chr1_2:62008176-62008195 | Msa0083030:intron | 10.0% |
!! | AAGAAAAATAATTGATTAAA+AGG | - | chr1_2:62008350-62008369 | None:intergenic | 10.0% |
!! | AAATAAATTATAAAACTTGA+GGG | - | chr1_2:62010941-62010960 | None:intergenic | 10.0% |
!! | AAAATAAATTATAAAACTTG+AGG | - | chr1_2:62010942-62010961 | None:intergenic | 10.0% |
!! | AATAATCACATAGATTAAAT+GGG | - | chr1_2:62006726-62006745 | None:intergenic | 15.0% |
!! | TAATAATCACATAGATTAAA+TGG | - | chr1_2:62006727-62006746 | None:intergenic | 15.0% |
!!! | ACAATTTTTTCTTATCTATA+TGG | + | chr1_2:62007533-62007552 | Msa0083030:intron | 15.0% |
!! | CTAAATAGATGTAATATTTA+TGG | - | chr1_2:62008876-62008895 | None:intergenic | 15.0% |
!!! | AGATTTTATGTTTTTATCAT+CGG | + | chr1_2:62010849-62010868 | Msa0083030:intron | 15.0% |
!! | AAATAGTATAATCTATAACT+AGG | + | chr1_2:62010883-62010902 | Msa0083030:intron | 15.0% |
!! | AATAGTATAATCTATAACTA+GGG | + | chr1_2:62010884-62010903 | Msa0083030:intron | 15.0% |
!! | AATAAATTATAAAACTTGAG+GGG | - | chr1_2:62010940-62010959 | None:intergenic | 15.0% |
!! | TTGATAAATTATTCAATCAT+TGG | - | chr1_2:62010994-62011013 | None:intergenic | 15.0% |
!!! | AAAAGATGAAATTTAAGATT+TGG | + | chr1_2:62011048-62011067 | Msa0083030:intron | 15.0% |
!!! | TGTAATGTATTATTTTTAAG+CGG | + | chr1_2:62011288-62011307 | Msa0083030:intron | 15.0% |
!!! | GAATTTGATTCTGTAAATTT+TGG | - | chr1_2:62006657-62006676 | None:intergenic | 20.0% |
!!! | AAGTTAGTTAGTTTGTTATT+TGG | + | chr1_2:62007280-62007299 | Msa0083030:intron | 20.0% |
!!! | AGTTAGTTAGTTTGTTATTT+GGG | + | chr1_2:62007281-62007300 | Msa0083030:intron | 20.0% |
!! | ATATGATCTTGAAACAAATA+AGG | + | chr1_2:62008811-62008830 | Msa0083030:CDS | 20.0% |
!! | TAAATTATAGATTCAGACAA+TGG | - | chr1_2:62008915-62008934 | None:intergenic | 20.0% |
!! | TTGTCTGAATCTATAATTTA+TGG | + | chr1_2:62008915-62008934 | Msa0083030:intron | 20.0% |
!! | TCTAATGTACAAAATTGTTT+AGG | + | chr1_2:62009569-62009588 | Msa0083030:intron | 20.0% |
!! | TTCATATAATTCAACAGATA+TGG | - | chr1_2:62009795-62009814 | None:intergenic | 20.0% |
!! | TAAATTAGACGACTTATATT+AGG | + | chr1_2:62009999-62010018 | Msa0083030:intron | 20.0% |
!! | AATTATGTTGTAAAATTGTG+AGG | + | chr1_2:62010114-62010133 | Msa0083030:intron | 20.0% |
!!! | AAACTCTGTATTTTTCATTT+TGG | - | chr1_2:62010198-62010217 | None:intergenic | 20.0% |
!! | ACTGAAATTTAGAGAAAAAT+CGG | - | chr1_2:62010409-62010428 | None:intergenic | 20.0% |
!! | CTTGAGCATATTAAAATTAT+TGG | + | chr1_2:62010686-62010705 | Msa0083030:intron | 20.0% |
!! | ATGTGTTTATGTATATGATT+TGG | + | chr1_2:62010801-62010820 | Msa0083030:CDS | 20.0% |
!! | ATAGTATAATCTATAACTAG+GGG | + | chr1_2:62010885-62010904 | Msa0083030:intron | 20.0% |
!! | ATTATTTATGTACAAGATTG+TGG | - | chr1_2:62011714-62011733 | None:intergenic | 20.0% |
! | TGTGCAAATTGTTACAAAAA+GGG | - | chr1_2:62006501-62006520 | None:intergenic | 25.0% |
! | ATGTGCAAATTGTTACAAAA+AGG | - | chr1_2:62006502-62006521 | None:intergenic | 25.0% |
!!! | AATTTTTGGTTTGTCTGATA+TGG | - | chr1_2:62006547-62006566 | None:intergenic | 25.0% |
!! | TTACAGAAAAGTACAAAAAC+AGG | - | chr1_2:62006994-62007013 | None:intergenic | 25.0% |
! | ATTCATAGTTTACTGATAAG+TGG | + | chr1_2:62007172-62007191 | Msa0083030:intron | 25.0% |
! | TTCATAGTTTACTGATAAGT+GGG | + | chr1_2:62007173-62007192 | Msa0083030:intron | 25.0% |
!!! | GAATTGGTTAGTTTGTTATT+TGG | + | chr1_2:62007325-62007344 | Msa0083030:intron | 25.0% |
!!! | TATCTTTTTACGTTTTAACC+AGG | + | chr1_2:62007499-62007518 | Msa0083030:intron | 25.0% |
! | AAATTGTTAAAACAACAACC+TGG | - | chr1_2:62007520-62007539 | None:intergenic | 25.0% |
! | AAAATGTATGACGAAACAAT+AGG | - | chr1_2:62007580-62007599 | None:intergenic | 25.0% |
! | CATAACTATTCAAATCAACA+CGG | - | chr1_2:62007682-62007701 | None:intergenic | 25.0% |
! | AAACTATAGATGCATACATA+GGG | - | chr1_2:62008151-62008170 | None:intergenic | 25.0% |
! | AAAACTATAGATGCATACAT+AGG | - | chr1_2:62008152-62008171 | None:intergenic | 25.0% |
!!! | CCACATTGTATATTTTTATG+TGG | - | chr1_2:62008205-62008224 | None:intergenic | 25.0% |
! | CCACATAAAAATATACAATG+TGG | + | chr1_2:62008202-62008221 | Msa0083030:CDS | 25.0% |
! | AAAATATACAATGTGGACAA+AGG | + | chr1_2:62008209-62008228 | Msa0083030:CDS | 25.0% |
!! | AACTGTCATAGTTTTTCTTA+TGG | + | chr1_2:62008374-62008393 | Msa0083030:intron | 25.0% |
! | TTTCAGTTCTTATAATATGC+AGG | + | chr1_2:62008661-62008680 | Msa0083030:intron | 25.0% |
!! | CTATTTAGCTTCATATGATT+TGG | + | chr1_2:62008888-62008907 | Msa0083030:intron | 25.0% |
!! | TGGAGAAATCATTTTCATAT+TGG | + | chr1_2:62009098-62009117 | Msa0083030:intron | 25.0% |
!! | GGAGAAATCATTTTCATATT+GGG | + | chr1_2:62009099-62009118 | Msa0083030:intron | 25.0% |
!! | AAATCATTTTCATATTGGGA+TGG | + | chr1_2:62009103-62009122 | Msa0083030:intron | 25.0% |
!! | AAAGTATTTACACATACCAT+AGG | + | chr1_2:62009140-62009159 | Msa0083030:intron | 25.0% |
!! | ACCATAGGTTTTCTAAATTT+TGG | + | chr1_2:62009155-62009174 | Msa0083030:intron | 25.0% |
! | ACCAAAATTTAGAAAACCTA+TGG | - | chr1_2:62009159-62009178 | None:intergenic | 25.0% |
! | TCTATGTGAAATCAAAAGTT+GGG | - | chr1_2:62009347-62009366 | None:intergenic | 25.0% |
! | TTCTATGTGAAATCAAAAGT+TGG | - | chr1_2:62009348-62009367 | None:intergenic | 25.0% |
! | CAGAAAGTTTATATTGTAGT+TGG | + | chr1_2:62009502-62009521 | Msa0083030:intron | 25.0% |
! | GTATACTTGTGAATTATCTA+TGG | + | chr1_2:62010141-62010160 | Msa0083030:intron | 25.0% |
!! | ATATAGAATTAGCTTAGTCT+CGG | - | chr1_2:62010354-62010373 | None:intergenic | 25.0% |
! | GAAAATGAAGAATGATGAAA+AGG | - | chr1_2:62010617-62010636 | None:intergenic | 25.0% |
! | TCCAAATATGAAAATCAAAG+GGG | - | chr1_2:62010651-62010670 | None:intergenic | 25.0% |
! | GTCCAAATATGAAAATCAAA+GGG | - | chr1_2:62010652-62010671 | None:intergenic | 25.0% |
! | TGTCCAAATATGAAAATCAA+AGG | - | chr1_2:62010653-62010672 | None:intergenic | 25.0% |
! | AATTTGAAGAAAACAACATC+AGG | - | chr1_2:62010737-62010756 | None:intergenic | 25.0% |
! | TAGTATAATCTATAACTAGG+GGG | + | chr1_2:62010886-62010905 | Msa0083030:intron | 25.0% |
!! | CTAATATTTTCATGCAGAAA+TGG | - | chr1_2:62011018-62011037 | None:intergenic | 25.0% |
!! | ATGAAATTTAAGATTTGGAG+TGG | + | chr1_2:62011053-62011072 | Msa0083030:intron | 25.0% |
! | GAGATACTGCTTATAAAATT+CGG | - | chr1_2:62011257-62011276 | None:intergenic | 25.0% |
!!! | CAAGGCATTGTATTTTTATT+GGG | - | chr1_2:62011350-62011369 | None:intergenic | 25.0% |
!! | AAACTTTGATGATTCATTAC+AGG | + | chr1_2:62011379-62011398 | Msa0083030:intron | 25.0% |
! | GTTGATATTGAAGTTGTATA+TGG | + | chr1_2:62011657-62011676 | Msa0083030:three_prime_UTR | 25.0% |
! | ATATGGTGTTTGACATAATA+AGG | + | chr1_2:62011674-62011693 | Msa0083030:three_prime_UTR | 25.0% |
AAAGTGAAAGTCAACTGAAA+GGG | - | chr1_2:62006691-62006710 | None:intergenic | 30.0% | |
TAAAGTGAAAGTCAACTGAA+AGG | - | chr1_2:62006692-62006711 | None:intergenic | 30.0% | |
TGAATACTGCATCAATTAAG+AGG | - | chr1_2:62006761-62006780 | None:intergenic | 30.0% | |
AACAGTGACTAAAAATTCAC+AGG | - | chr1_2:62006805-62006824 | None:intergenic | 30.0% | |
ATGATGTTTGTCAAATTCCT+TGG | + | chr1_2:62006959-62006978 | Msa0083030:intron | 30.0% | |
AAGTACAAAAACAGGTTCAT+GGG | - | chr1_2:62006986-62007005 | None:intergenic | 30.0% | |
AAAGTACAAAAACAGGTTCA+TGG | - | chr1_2:62006987-62007006 | None:intergenic | 30.0% | |
ATACTAGTGTATCAATATCG+GGG | - | chr1_2:62007086-62007105 | None:intergenic | 30.0% | |
CATACTAGTGTATCAATATC+GGG | - | chr1_2:62007087-62007106 | None:intergenic | 30.0% | |
GCATACTAGTGTATCAATAT+CGG | - | chr1_2:62007088-62007107 | None:intergenic | 30.0% | |
TTGATACACTAGTATGCATA+TGG | + | chr1_2:62007091-62007110 | Msa0083030:intron | 30.0% | |
TATGCATATGGTATTCACTA+GGG | + | chr1_2:62007103-62007122 | Msa0083030:intron | 30.0% | |
!! | AATTTTATGCATTGAGTTGC+CGG | + | chr1_2:62007144-62007163 | Msa0083030:intron | 30.0% |
AGTAAACTATGAATCATACC+CGG | - | chr1_2:62007166-62007185 | None:intergenic | 30.0% | |
!!! | GTTTTGAGTTGTTAGAGAAT+TGG | + | chr1_2:62007309-62007328 | Msa0083030:intron | 30.0% |
AAACACATGATATTTGATCC+CGG | - | chr1_2:62007464-62007483 | None:intergenic | 30.0% | |
!!! | CGTCATACATTTTATTTTGC+AGG | + | chr1_2:62007587-62007606 | Msa0083030:intron | 30.0% |
TTTAAATAGCTCAGATGCTT+TGG | + | chr1_2:62007641-62007660 | Msa0083030:five_prime_UTR | 30.0% | |
ATAGTTATGTACGCTATATC+TGG | + | chr1_2:62007693-62007712 | Msa0083030:exon | 30.0% | |
! | TAGCACTGGAAAATCTAAAA+AGG | + | chr1_2:62007809-62007828 | Msa0083030:CDS | 30.0% |
AGCAGATATTTACCTGTAAA+TGG | + | chr1_2:62008020-62008039 | Msa0083030:CDS | 30.0% | |
TAAAAGTGAAAATGCTTACC+TGG | - | chr1_2:62008127-62008146 | None:intergenic | 30.0% | |
TTCTAACTAAGAGTTTGAGA+TGG | + | chr1_2:62008252-62008271 | Msa0083030:CDS | 30.0% | |
CATTTGCATTCTTCAATTTC+AGG | + | chr1_2:62008397-62008416 | Msa0083030:intron | 30.0% | |
ACATTTACAATGTGTACGAT+AGG | - | chr1_2:62008440-62008459 | None:intergenic | 30.0% | |
ATCGTACACATTGTAAATGT+TGG | + | chr1_2:62008440-62008459 | Msa0083030:CDS | 30.0% | |
CCAAAGATCATAATTCAATG+TGG | - | chr1_2:62008504-62008523 | None:intergenic | 30.0% | |
CCACATTGAATTATGATCTT+TGG | + | chr1_2:62008501-62008520 | Msa0083030:intron | 30.0% | |
TCAGAGGAATAGATACAAAT+TGG | + | chr1_2:62008563-62008582 | Msa0083030:intron | 30.0% | |
!!! | TTTTCTAAGATGTCTGTAAC+TGG | + | chr1_2:62008587-62008606 | Msa0083030:intron | 30.0% |
ATGAAAAGAACACCATCAAA+CGG | - | chr1_2:62008628-62008647 | None:intergenic | 30.0% | |
! | GATTTTTCATCAAATGACGA+TGG | + | chr1_2:62008701-62008720 | Msa0083030:CDS | 30.0% |
! | TCTGTGAAATTTTCAACAGA+TGG | + | chr1_2:62008746-62008765 | Msa0083030:CDS | 30.0% |
! | CTGTGAAATTTTCAACAGAT+GGG | + | chr1_2:62008747-62008766 | Msa0083030:CDS | 30.0% |
AGTTTCATCAGCAAAACATA+CGG | - | chr1_2:62009212-62009231 | None:intergenic | 30.0% | |
AGGTATGTTCTACAATAAGA+TGG | + | chr1_2:62009272-62009291 | Msa0083030:intron | 30.0% | |
ATCTCATACTTATATCGTCA+AGG | + | chr1_2:62009397-62009416 | Msa0083030:intron | 30.0% | |
TGTACAAAATTGTTTAGGTC+TGG | + | chr1_2:62009574-62009593 | Msa0083030:intron | 30.0% | |
GTACAAAATTGTTTAGGTCT+GGG | + | chr1_2:62009575-62009594 | Msa0083030:intron | 30.0% | |
ATTACATTTATTGATACCCG+TGG | + | chr1_2:62009660-62009679 | Msa0083030:CDS | 30.0% | |
TGGGAAAGATAAAATTCATG+TGG | + | chr1_2:62009871-62009890 | Msa0083030:intron | 30.0% | |
AGTAAAATACACCTTGTTCA+TGG | + | chr1_2:62009926-62009945 | Msa0083030:intron | 30.0% | |
ACTCTAAATTTCCATGAACA+AGG | - | chr1_2:62009940-62009959 | None:intergenic | 30.0% | |
!! | AACTCTAGTTAACTTGTATC+TGG | + | chr1_2:62009974-62009993 | Msa0083030:intron | 30.0% |
CTAATGCATAATAGAGATAC+AGG | + | chr1_2:62010063-62010082 | Msa0083030:intron | 30.0% | |
!!! | TGGATATAGGAGTTTTGAAT+GGG | + | chr1_2:62010440-62010459 | Msa0083030:CDS | 30.0% |
TGAAGAATGATGAAAAGGTA+AGG | - | chr1_2:62010612-62010631 | None:intergenic | 30.0% | |
!! | TCCCCTTTGATTTTCATATT+TGG | + | chr1_2:62010647-62010666 | Msa0083030:intron | 30.0% |
TTTCTTCAAATTTACAGCAC+TGG | + | chr1_2:62010745-62010764 | Msa0083030:intron | 30.0% | |
ATCCAGTATAGATATACTTC+TGG | - | chr1_2:62010771-62010790 | None:intergenic | 30.0% | |
!! | TTTAGGCATTTTGCTATGTT+CGG | - | chr1_2:62011108-62011127 | None:intergenic | 30.0% |
!! | TAGTAGTTTGCTGATTGTTT+AGG | - | chr1_2:62011125-62011144 | None:intergenic | 30.0% |
!!! | GAGTATTAGAGTTTTGTTCA+TGG | + | chr1_2:62011190-62011209 | Msa0083030:intron | 30.0% |
TAAAATTCGGTTATGAACAG+CGG | - | chr1_2:62011244-62011263 | None:intergenic | 30.0% | |
!!! | GCAAGGCATTGTATTTTTAT+TGG | - | chr1_2:62011351-62011370 | None:intergenic | 30.0% |
TCAAAGTTTCTTATTGAGCA+AGG | - | chr1_2:62011368-62011387 | None:intergenic | 30.0% | |
AATCTCTTACAGGTGATTTA+TGG | - | chr1_2:62011436-62011455 | None:intergenic | 30.0% | |
! | ACTGATTTAACTGACATCAT+AGG | - | chr1_2:62011601-62011620 | None:intergenic | 30.0% |
! | AATCTTCTGCTTTGGGTAAT+TGG | - | chr1_2:62006464-62006483 | None:intergenic | 35.0% |
TTCATGGAATCTTCTGCTTT+GGG | - | chr1_2:62006471-62006490 | None:intergenic | 35.0% | |
CAAAAAGGGAAACATGTTCA+TGG | - | chr1_2:62006487-62006506 | None:intergenic | 35.0% | |
ACCAAAAATTCCATCCTAAG+AGG | + | chr1_2:62006557-62006576 | Msa0083030:five_prime_UTR | 35.0% | |
! | ACCTCTTAGGATGGAATTTT+TGG | - | chr1_2:62006561-62006580 | None:intergenic | 35.0% |
AAATTCCATCCTAAGAGGTA+TGG | + | chr1_2:62006562-62006581 | Msa0083030:intron | 35.0% | |
AAGTGAAAGTCAACTGAAAG+GGG | - | chr1_2:62006690-62006709 | None:intergenic | 35.0% | |
!! | TGTTGATGATGTTGTGGAAA+GGG | + | chr1_2:62006821-62006840 | Msa0083030:intron | 35.0% |
! | ATGTTGTGGAAAGGGTTTTT+GGG | + | chr1_2:62006829-62006848 | Msa0083030:intron | 35.0% |
AAACAACGACTGAAAAGAAG+TGG | + | chr1_2:62006896-62006915 | Msa0083030:intron | 35.0% | |
AGAAAACCATCCCCATTATA+AGG | + | chr1_2:62007031-62007050 | Msa0083030:intron | 35.0% | |
TGGTTCTTTCGCCTTATAAT+GGG | - | chr1_2:62007045-62007064 | None:intergenic | 35.0% | |
GTATGCATATGGTATTCACT+AGG | + | chr1_2:62007102-62007121 | Msa0083030:intron | 35.0% | |
!! | ATTTTATGCATTGAGTTGCC+GGG | + | chr1_2:62007145-62007164 | Msa0083030:intron | 35.0% |
TAGTTTACTGATAAGTGGGT+AGG | + | chr1_2:62007177-62007196 | Msa0083030:intron | 35.0% | |
! | TAGAGAGTATGTGCATAAAC+AGG | + | chr1_2:62007354-62007373 | Msa0083030:intron | 35.0% |
TGATATTTGATCCCGGATTA+CGG | - | chr1_2:62007457-62007476 | None:intergenic | 35.0% | |
ATCAACACGGAAAAATGTTG+CGG | - | chr1_2:62007669-62007688 | None:intergenic | 35.0% | |
TACTCATAGCATAACCCATT+TGG | - | chr1_2:62007734-62007753 | None:intergenic | 35.0% | |
!! | ATGAGGTGTTGATTTCAACT+TGG | - | chr1_2:62007871-62007890 | None:intergenic | 35.0% |
ATCAACTGCTAGTACATGAT+GGG | + | chr1_2:62007889-62007908 | Msa0083030:CDS | 35.0% | |
ATTTACCTGTAAATGGTCCT+TGG | + | chr1_2:62008027-62008046 | Msa0083030:CDS | 35.0% | |
!!! | ATGGTTCACTTTTTGTTGCT+GGG | + | chr1_2:62008099-62008118 | Msa0083030:CDS | 35.0% |
TATACAATGTGGACAAAGGT+TGG | + | chr1_2:62008213-62008232 | Msa0083030:CDS | 35.0% | |
!! | TTACTAGATGGCTTTGATCA+GGG | - | chr1_2:62008301-62008320 | None:intergenic | 35.0% |
AAAGCCATCTAGTAAGTAAC+TGG | + | chr1_2:62008306-62008325 | Msa0083030:intron | 35.0% | |
GTTTCCAGTTACTTACTAGA+TGG | - | chr1_2:62008313-62008332 | None:intergenic | 35.0% | |
!! | GTTTTGAATGCTATGATCAG+AGG | + | chr1_2:62008547-62008566 | Msa0083030:intron | 35.0% |
! | TTTTCATCAAATGACGATGG+AGG | + | chr1_2:62008704-62008723 | Msa0083030:CDS | 35.0% |
! | TGAAATTTTCAACAGATGGG+AGG | + | chr1_2:62008750-62008769 | Msa0083030:CDS | 35.0% |
! | GAAATTTTCAACAGATGGGA+GGG | + | chr1_2:62008751-62008770 | Msa0083030:CDS | 35.0% |
ATTTATGGTGCAGTTTGAAG+CGG | + | chr1_2:62008930-62008949 | Msa0083030:intron | 35.0% | |
! | AGTTTGCTTAGCTGCATAAT+AGG | + | chr1_2:62008981-62009000 | Msa0083030:intron | 35.0% |
GACACTGTCAATAGATTAAG+TGG | - | chr1_2:62009014-62009033 | None:intergenic | 35.0% | |
!! | TTGGTTTTCATTTTACGTGC+AGG | + | chr1_2:62009174-62009193 | Msa0083030:intron | 35.0% |
! | GTATGTTTTGCTGATGAAAC+TGG | + | chr1_2:62009211-62009230 | Msa0083030:CDS | 35.0% |
CACTTCCAGAGTAAATAAGA+TGG | - | chr1_2:62009237-62009256 | None:intergenic | 35.0% | |
AAGTGATGATAGTTTCTGCA+AGG | + | chr1_2:62009252-62009271 | Msa0083030:CDS | 35.0% | |
CAAAAGTTGGGATACTCAAA+AGG | - | chr1_2:62009335-62009354 | None:intergenic | 35.0% | |
! | GTAATGAACACCTTTTACAC+AGG | + | chr1_2:62009368-62009387 | Msa0083030:intron | 35.0% |
AGATTGAACTCCTGTGTAAA+AGG | - | chr1_2:62009381-62009400 | None:intergenic | 35.0% | |
CTTAAATGCTAAAGACAAGC+CGG | + | chr1_2:62009608-62009627 | Msa0083030:CDS | 35.0% | |
CAATAAATGTAATGCCCTCA+AGG | - | chr1_2:62009653-62009672 | None:intergenic | 35.0% | |
! | GGACGCTATTTCATTTCAAA+CGG | + | chr1_2:62009687-62009706 | Msa0083030:CDS | 35.0% |
AAGATCAGACCATCAAACTT+TGG | + | chr1_2:62009712-62009731 | Msa0083030:CDS | 35.0% | |
AGATCAGACCATCAAACTTT+GGG | + | chr1_2:62009713-62009732 | Msa0083030:CDS | 35.0% | |
AAATGTCATCCAATGTTACC+AGG | + | chr1_2:62009745-62009764 | Msa0083030:CDS | 35.0% | |
CAACAGATATGGATACCAAA+AGG | - | chr1_2:62009784-62009803 | None:intergenic | 35.0% | |
ACCTTATAGAAATGTGTGCT+CGG | - | chr1_2:62010094-62010113 | None:intergenic | 35.0% | |
!!! | GTGGATATAGGAGTTTTGAA+TGG | + | chr1_2:62010439-62010458 | Msa0083030:CDS | 35.0% |
! | TGATTCAAGTCTTTTGCTTG+TGG | - | chr1_2:62010489-62010508 | None:intergenic | 35.0% |
TTGTAAAATGGCAATCTGCT+GGG | + | chr1_2:62011510-62011529 | Msa0083030:CDS | 35.0% | |
GTTCATGGAATCTTCTGCTT+TGG | - | chr1_2:62006472-62006491 | None:intergenic | 40.0% | |
TGATACAGACCATACCTCTT+AGG | - | chr1_2:62006574-62006593 | None:intergenic | 40.0% | |
!! | AGTCACTGTTGATGATGTTG+TGG | + | chr1_2:62006815-62006834 | Msa0083030:intron | 40.0% |
!! | CTGTTGATGATGTTGTGGAA+AGG | + | chr1_2:62006820-62006839 | Msa0083030:intron | 40.0% |
! | GATGTTGTGGAAAGGGTTTT+TGG | + | chr1_2:62006828-62006847 | Msa0083030:intron | 40.0% |
! | TGTTGTGGAAAGGGTTTTTG+GGG | + | chr1_2:62006830-62006849 | Msa0083030:intron | 40.0% |
GGTTCTTTCGCCTTATAATG+GGG | - | chr1_2:62007044-62007063 | None:intergenic | 40.0% | |
GTGGTTCTTTCGCCTTATAA+TGG | - | chr1_2:62007046-62007065 | None:intergenic | 40.0% | |
TGCATAAACAGGAGAACACA+AGG | + | chr1_2:62007365-62007384 | Msa0083030:intron | 40.0% | |
AGACACAATTGACCGTAATC+CGG | + | chr1_2:62007442-62007461 | Msa0083030:intron | 40.0% | |
TTTGCAGGATTGACAAACAC+AGG | + | chr1_2:62007602-62007621 | Msa0083030:intron | 40.0% | |
TTGCAGGATTGACAAACACA+GGG | + | chr1_2:62007603-62007622 | Msa0083030:intron | 40.0% | |
TGCACTTTACGTTGACCAAA+TGG | + | chr1_2:62007716-62007735 | Msa0083030:CDS | 40.0% | |
GCACTTTACGTTGACCAAAT+GGG | + | chr1_2:62007717-62007736 | Msa0083030:CDS | 40.0% | |
TGCTATGAGTAGATTAGACG+TGG | + | chr1_2:62007743-62007762 | Msa0083030:CDS | 40.0% | |
GACTCTAGTGATACTGAAGA+TGG | + | chr1_2:62007765-62007784 | Msa0083030:CDS | 40.0% | |
ATCCTTGAAGATTCTAGCAC+TGG | + | chr1_2:62007795-62007814 | Msa0083030:CDS | 40.0% | |
TTCCAGTGCTAGAATCTTCA+AGG | - | chr1_2:62007800-62007819 | None:intergenic | 40.0% | |
! | TCATGTACTAGCAGTTGATG+AGG | - | chr1_2:62007888-62007907 | None:intergenic | 40.0% |
CATCAACTGCTAGTACATGA+TGG | + | chr1_2:62007888-62007907 | Msa0083030:CDS | 40.0% | |
!!! | GATGGTTCACTTTTTGTTGC+TGG | + | chr1_2:62008098-62008117 | Msa0083030:CDS | 40.0% |
!! | TACTAGATGGCTTTGATCAG+GGG | - | chr1_2:62008300-62008319 | None:intergenic | 40.0% |
!! | CTTACTAGATGGCTTTGATC+AGG | - | chr1_2:62008302-62008321 | None:intergenic | 40.0% |
AGAGTCACTAGCAAATGTGA+CGG | + | chr1_2:62008475-62008494 | Msa0083030:CDS | 40.0% | |
CTGTAACTGGTGTATGTACA+AGG | + | chr1_2:62008600-62008619 | Msa0083030:intron | 40.0% | |
ATGTACAAGGTTCCGTTTGA+TGG | + | chr1_2:62008613-62008632 | Msa0083030:intron | 40.0% | |
ATGAAAAATCCAACCCATCG+TGG | - | chr1_2:62008691-62008710 | None:intergenic | 40.0% | |
GAATTAGTTGCAGGAACTAG+TGG | + | chr1_2:62008773-62008792 | Msa0083030:CDS | 40.0% | |
! | TTTATGGTGCAGTTTGAAGC+GGG | + | chr1_2:62008931-62008950 | Msa0083030:intron | 40.0% |
! | CATATTGGGATGGCTCTATA+TGG | + | chr1_2:62009113-62009132 | Msa0083030:intron | 40.0% |
! | ACTGGCCATCTTATTTACTC+TGG | + | chr1_2:62009229-62009248 | Msa0083030:CDS | 40.0% |
AGTTGGGATACTCAAAAGGA+GGG | - | chr1_2:62009331-62009350 | None:intergenic | 40.0% | |
AAGTTGGGATACTCAAAAGG+AGG | - | chr1_2:62009332-62009351 | None:intergenic | 40.0% | |
!! | GTTGTTTTGTTCTTTCCCTC+TGG | + | chr1_2:62009526-62009545 | Msa0083030:intron | 40.0% |
TTTATTGATACCCGTGGAGA+TGG | + | chr1_2:62009666-62009685 | Msa0083030:CDS | 40.0% | |
ACGTATGTCCCAAAGTTTGA+TGG | - | chr1_2:62009724-62009743 | None:intergenic | 40.0% | |
! | AAGAGCATACCTGGTAACAT+TGG | - | chr1_2:62009757-62009776 | None:intergenic | 40.0% |
! | AAAGGCTAAAAGAGCATACC+TGG | - | chr1_2:62009766-62009785 | None:intergenic | 40.0% |
!! | GGTATGCTCTTTTAGCCTTT+TGG | + | chr1_2:62009766-62009785 | Msa0083030:intron | 40.0% |
AACCATAAGTCTGTGACTGA+TGG | + | chr1_2:62010025-62010044 | Msa0083030:intron | 40.0% | |
ACCATAAGTCTGTGACTGAT+GGG | + | chr1_2:62010026-62010045 | Msa0083030:intron | 40.0% | |
TCCGAGCACACATTTCTATA+AGG | + | chr1_2:62010090-62010109 | Msa0083030:intron | 40.0% | |
GACACAGAATCATCGTTGAT+TGG | - | chr1_2:62010266-62010285 | None:intergenic | 40.0% | |
AGGAACAGACAACATTAGCT+AGG | - | chr1_2:62010329-62010348 | None:intergenic | 40.0% | |
! | GAATTAGCTTAGTCTCGGAT+AGG | - | chr1_2:62010349-62010368 | None:intergenic | 40.0% |
AATTTCAGTAACCGTGTTCG+TGG | + | chr1_2:62010420-62010439 | Msa0083030:intron | 40.0% | |
AACTCCTATATCCACGAACA+CGG | - | chr1_2:62010434-62010453 | None:intergenic | 40.0% | |
!!! | GGAGTTTTGAATGGGATTAC+AGG | + | chr1_2:62010448-62010467 | Msa0083030:CDS | 40.0% |
!! | GTTTTGAATGGGATTACAGG+TGG | + | chr1_2:62010451-62010470 | Msa0083030:CDS | 40.0% |
! | TTCAAGTCTTTTGCTTGTGG+CGG | - | chr1_2:62010486-62010505 | None:intergenic | 40.0% |
!! | GCTTTTTCTCTCCAGCTTTT+AGG | + | chr1_2:62010571-62010590 | Msa0083030:CDS | 40.0% |
TTTAGTGGTCACCTAAAAGC+TGG | - | chr1_2:62010585-62010604 | None:intergenic | 40.0% | |
!! | CTTTTAGGTGACCACTAAAC+TGG | + | chr1_2:62010586-62010605 | Msa0083030:intron | 40.0% |
AAAAGGTAAGGCCAGTTTAG+TGG | - | chr1_2:62010600-62010619 | None:intergenic | 40.0% | |
! | GGCCAGAAGTATATCTATAC+TGG | + | chr1_2:62010766-62010785 | Msa0083030:CDS | 40.0% |
AATCTATAACTAGGGGGAAG+AGG | + | chr1_2:62010892-62010911 | Msa0083030:intron | 40.0% | |
ATCTATAACTAGGGGGAAGA+GGG | + | chr1_2:62010893-62010912 | Msa0083030:intron | 40.0% | |
TCTCCTTGAACTTTGATTCC+TGG | + | chr1_2:62011213-62011232 | Msa0083030:intron | 40.0% | |
GATGATTCATTACAGGTGAG+TGG | + | chr1_2:62011386-62011405 | Msa0083030:intron | 40.0% | |
CACCTGTAAGAGATTGTAGT+TGG | + | chr1_2:62011441-62011460 | Msa0083030:CDS | 40.0% | |
TGCCAACTACAATCTCTTAC+AGG | - | chr1_2:62011446-62011465 | None:intergenic | 40.0% | |
AAGAAGAGCTAACGAGCATA+GGG | - | chr1_2:62011478-62011497 | None:intergenic | 40.0% | |
! | TATGCTCGTTAGCTCTTCTT+GGG | + | chr1_2:62011478-62011497 | Msa0083030:CDS | 40.0% |
GGGATGGAGATGTTGTAAAA+TGG | + | chr1_2:62011498-62011517 | Msa0083030:CDS | 40.0% | |
GTTGTAAAATGGCAATCTGC+TGG | + | chr1_2:62011509-62011528 | Msa0083030:CDS | 40.0% | |
ACAGACCATACCTCTTAGGA+TGG | - | chr1_2:62006570-62006589 | None:intergenic | 45.0% | |
!!! | AAGGGTTTTTGGGGTCATAG+AGG | + | chr1_2:62006839-62006858 | Msa0083030:intron | 45.0% |
!!! | GTTTTTGGGGTCATAGAGGT+GGG | + | chr1_2:62006843-62006862 | Msa0083030:intron | 45.0% |
!!! | TTTTTGGGGTCATAGAGGTG+GGG | + | chr1_2:62006844-62006863 | Msa0083030:intron | 45.0% |
ACGACTGAAAAGAAGTGGCT+TGG | + | chr1_2:62006901-62006920 | Msa0083030:intron | 45.0% | |
CGACTGAAAAGAAGTGGCTT+GGG | + | chr1_2:62006902-62006921 | Msa0083030:intron | 45.0% | |
AAAACAGGTTCATGGGACCA+AGG | - | chr1_2:62006979-62006998 | None:intergenic | 45.0% | |
! | CTTTCGCCTTATAATGGGGA+TGG | - | chr1_2:62007040-62007059 | None:intergenic | 45.0% |
!! | AGTTTGTTGGGCTTCAACTG+CGG | + | chr1_2:62007207-62007226 | Msa0083030:intron | 45.0% |
GACACAATTGACCGTAATCC+GGG | + | chr1_2:62007443-62007462 | Msa0083030:intron | 45.0% | |
TGCAGGATTGACAAACACAG+GGG | + | chr1_2:62007604-62007623 | Msa0083030:intron | 45.0% | |
!! | TAGTACATGATGGGTCTGGA+AGG | + | chr1_2:62007898-62007917 | Msa0083030:CDS | 45.0% |
GTCCTGAACAATTGGATTCG+CGG | - | chr1_2:62007962-62007981 | None:intergenic | 45.0% | |
GCGAATCCAATTGTTCAGGA+CGG | + | chr1_2:62007961-62007980 | Msa0083030:CDS | 45.0% | |
CGAATCCAATTGTTCAGGAC+GGG | + | chr1_2:62007962-62007981 | Msa0083030:CDS | 45.0% | |
GAATCCAATTGTTCAGGACG+GGG | + | chr1_2:62007963-62007982 | Msa0083030:CDS | 45.0% | |
CAAAAGATGACAGCGATCAG+CGG | - | chr1_2:62008000-62008019 | None:intergenic | 45.0% | |
ATAGGCCAAGGACCATTTAC+AGG | - | chr1_2:62008035-62008054 | None:intergenic | 45.0% | |
! | GTGTCTCAGTTTTCAGCTGA+TGG | + | chr1_2:62008080-62008099 | Msa0083030:CDS | 45.0% |
! | ACTTTTTGTTGCTGGGTTCC+AGG | + | chr1_2:62008106-62008125 | Msa0083030:CDS | 45.0% |
AATATGCAGGAGATCCACGA+TGG | + | chr1_2:62008674-62008693 | Msa0083030:intron | 45.0% | |
ATATGCAGGAGATCCACGAT+GGG | + | chr1_2:62008675-62008694 | Msa0083030:intron | 45.0% | |
! | GACGATGGAGGATACTCTTT+TGG | + | chr1_2:62008716-62008735 | Msa0083030:CDS | 45.0% |
!! | GCTTCGAATTTTAGCGCACA+CGG | + | chr1_2:62008838-62008857 | Msa0083030:CDS | 45.0% |
!! | GTTTTGATGGGACACCTTGA+GGG | + | chr1_2:62009636-62009655 | Msa0083030:CDS | 45.0% |
TGAAATAGCGTCCATCTCCA+CGG | - | chr1_2:62009680-62009699 | None:intergenic | 45.0% | |
ACCCATCAGTCACAGACTTA+TGG | - | chr1_2:62010030-62010049 | None:intergenic | 45.0% | |
! | AAGTCTGTGACTGATGGGTA+TGG | + | chr1_2:62010031-62010050 | Msa0083030:intron | 45.0% |
TTTGTGTCAGCTTGTCTGTC+TGG | + | chr1_2:62010288-62010307 | Msa0083030:intron | 45.0% | |
GTAACCGTGTTCGTGGATAT+AGG | + | chr1_2:62010427-62010446 | Msa0083030:intron | 45.0% | |
TGAATGGGATTACAGGTGGA+TGG | + | chr1_2:62010455-62010474 | Msa0083030:CDS | 45.0% | |
! | TCAAGTCTTTTGCTTGTGGC+GGG | - | chr1_2:62010485-62010504 | None:intergenic | 45.0% |
TCATCCTTGTGATCAGTCAG+TGG | + | chr1_2:62010506-62010525 | Msa0083030:CDS | 45.0% | |
! | CAAGAGTGCGTAAGACTGAA+TGG | - | chr1_2:62010545-62010564 | None:intergenic | 45.0% |
AAGCTGGAGAGAAAAAGCAG+CGG | - | chr1_2:62010569-62010588 | None:intergenic | 45.0% | |
AGGCCAGGAATCAAAGTTCA+AGG | - | chr1_2:62011219-62011238 | None:intergenic | 45.0% | |
CAAGAAGAGCTAACGAGCAT+AGG | - | chr1_2:62011479-62011498 | None:intergenic | 45.0% | |
! | CTATGCTCGTTAGCTCTTCT+TGG | + | chr1_2:62011477-62011496 | Msa0083030:CDS | 45.0% |
!!! | TAATTTATTTATCATTTTTA+TGG | + | chr1_2:62009078-62009097 | Msa0083030:intron | 5.0% |
!!! | GGTTTTTGGGGTCATAGAGG+TGG | + | chr1_2:62006842-62006861 | Msa0083030:intron | 50.0% |
GGAGCTTCGTAGAACAAGTG+TGG | - | chr1_2:62007065-62007084 | None:intergenic | 50.0% | |
! | GTAGGTCGCTCGAGTTTGTT+GGG | + | chr1_2:62007195-62007214 | Msa0083030:intron | 50.0% |
! | GTTTGTTGGGCTTCAACTGC+GGG | + | chr1_2:62007208-62007227 | Msa0083030:intron | 50.0% |
!! | CTGCTAGTACATGATGGGTC+TGG | + | chr1_2:62007894-62007913 | Msa0083030:CDS | 50.0% |
GAAAGAGTTGCCTGTTTCCC+CGG | + | chr1_2:62007920-62007939 | Msa0083030:CDS | 50.0% | |
CGACTAGGCATTTGGTCGAT+AGG | - | chr1_2:62008053-62008072 | None:intergenic | 50.0% | |
CGTATGCTCGACTAGGCATT+TGG | - | chr1_2:62008061-62008080 | None:intergenic | 50.0% | |
TGAGACACGTATGCTCGACT+AGG | - | chr1_2:62008068-62008087 | None:intergenic | 50.0% | |
GTGTACGATAGGTGACATGC+TGG | - | chr1_2:62008429-62008448 | None:intergenic | 50.0% | |
GATGGGAGGGAATTAGTTGC+AGG | + | chr1_2:62008764-62008783 | Msa0083030:CDS | 50.0% | |
GTTCTTTCCCTCTGGACTTC+AGG | + | chr1_2:62009534-62009553 | Msa0083030:intron | 50.0% | |
! | TTCCCTCTGGACTTCAGGTT+AGG | + | chr1_2:62009539-62009558 | Msa0083030:intron | 50.0% |
! | TCCCTCTGGACTTCAGGTTA+GGG | + | chr1_2:62009540-62009559 | Msa0083030:intron | 50.0% |
TCCCTAACCTGAAGTCCAGA+GGG | - | chr1_2:62009544-62009563 | None:intergenic | 50.0% | |
AATGCTAAAGACAAGCCGGC+AGG | + | chr1_2:62009612-62009631 | Msa0083030:CDS | 50.0% | |
ATGCTAAAGACAAGCCGGCA+GGG | + | chr1_2:62009613-62009632 | Msa0083030:CDS | 50.0% | |
!! | GGTTTTGATGGGACACCTTG+AGG | + | chr1_2:62009635-62009654 | Msa0083030:CDS | 50.0% |
GAAATAGCGTCCATCTCCAC+GGG | - | chr1_2:62009679-62009698 | None:intergenic | 50.0% | |
! | TGCTAGAGCACTTCTGCTGA+TGG | + | chr1_2:62009851-62009870 | Msa0083030:intron | 50.0% |
! | GCTAGAGCACTTCTGCTGAT+GGG | + | chr1_2:62009852-62009871 | Msa0083030:intron | 50.0% |
! | GTAGCCACTGACTGATCACA+AGG | - | chr1_2:62010513-62010532 | None:intergenic | 50.0% |
CAGTCAGTGGCTACGTATAG+AGG | + | chr1_2:62010519-62010538 | Msa0083030:CDS | 50.0% | |
TATAACTAGGGGGAAGAGGG+AGG | + | chr1_2:62010896-62010915 | Msa0083030:intron | 50.0% | |
CTAACGAGCATAGGGTGGAA+AGG | - | chr1_2:62011470-62011489 | None:intergenic | 50.0% | |
AAGAGCTAACGAGCATAGGG+TGG | - | chr1_2:62011475-62011494 | None:intergenic | 50.0% | |
! | CTCGTTAGCTCTTCTTGGGA+TGG | + | chr1_2:62011482-62011501 | Msa0083030:CDS | 50.0% |
! | ATCTGCTGGGAGCTCTGATA+TGG | + | chr1_2:62011523-62011542 | Msa0083030:CDS | 50.0% |
! | AGCCTCGTCGGTTAAGAAGA+GGG | + | chr1_2:62011547-62011566 | Msa0083030:CDS | 50.0% |
TACCCTCTTCTTAACCGACG+AGG | - | chr1_2:62011552-62011571 | None:intergenic | 50.0% | |
GGTAGGTCGCTCGAGTTTGT+TGG | + | chr1_2:62007194-62007213 | Msa0083030:intron | 55.0% | |
AGCATCTTCACCGGGGAAAC+AGG | - | chr1_2:62007933-62007952 | None:intergenic | 55.0% | |
TGTTTCCCCGGTGAAGATGC+TGG | + | chr1_2:62007932-62007951 | Msa0083030:CDS | 55.0% | |
GGCCGCGAATCCAATTGTTC+AGG | + | chr1_2:62007957-62007976 | Msa0083030:CDS | 55.0% | |
CCTTCCCCGTCCTGAACAAT+TGG | - | chr1_2:62007970-62007989 | None:intergenic | 55.0% | |
CCAATTGTTCAGGACGGGGA+AGG | + | chr1_2:62007967-62007986 | Msa0083030:CDS | 55.0% | |
GGCATTTGGTCGATAGGCCA+AGG | - | chr1_2:62008047-62008066 | None:intergenic | 55.0% | |
! | ATGGTGCAGTTTGAAGCGGG+TGG | + | chr1_2:62008934-62008953 | Msa0083030:intron | 55.0% |
GTCCCTAACCTGAAGTCCAG+AGG | - | chr1_2:62009545-62009564 | None:intergenic | 55.0% | |
TGCTAAAGACAAGCCGGCAG+GGG | + | chr1_2:62009614-62009633 | Msa0083030:CDS | 55.0% | |
!! | AAGCCGGCAGGGGTTTTGAT+GGG | + | chr1_2:62009624-62009643 | Msa0083030:CDS | 55.0% |
TGTCCCATCAAAACCCCTGC+CGG | - | chr1_2:62009630-62009649 | None:intergenic | 55.0% | |
TTCGGTTATGAACAGCGGCG+AGG | - | chr1_2:62011239-62011258 | None:intergenic | 55.0% | |
CTCTGATATGGCAGCCTCGT+CGG | + | chr1_2:62011535-62011554 | Msa0083030:CDS | 55.0% | |
! | CAGCCTCGTCGGTTAAGAAG+AGG | + | chr1_2:62011546-62011565 | Msa0083030:CDS | 55.0% |
GCAGGAGATCCACGATGGGT+TGG | + | chr1_2:62008679-62008698 | Msa0083030:intron | 60.0% | |
!! | CAAGCCGGCAGGGGTTTTGA+TGG | + | chr1_2:62009623-62009642 | Msa0083030:CDS | 60.0% |
CTAGGGGGAAGAGGGAGGAT+AGG | + | chr1_2:62010901-62010920 | Msa0083030:intron | 60.0% | |
TTATGAACAGCGGCGAGGCC+AGG | - | chr1_2:62011234-62011253 | None:intergenic | 60.0% | |
TCCCCGGTGAAGATGCTGGC+AGG | + | chr1_2:62007936-62007955 | Msa0083030:CDS | 65.0% | |
GCCTGCCAGCATCTTCACCG+GGG | - | chr1_2:62007940-62007959 | None:intergenic | 65.0% | |
GGCCTGCCAGCATCTTCACC+GGG | - | chr1_2:62007941-62007960 | None:intergenic | 65.0% | |
CGGCCTGCCAGCATCTTCAC+CGG | - | chr1_2:62007942-62007961 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 62006392 | 62011763 | 62006392 | ID=Msa0083030;Name=Msa0083030 |
chr1_2 | mRNA | 62006392 | 62011763 | 62006392 | ID=Msa0083030-mRNA-1;Parent=Msa0083030;Name=Msa0083030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=277|1|1|1|0.88|0.8|10|159|495 |
chr1_2 | exon | 62006392 | 62006578 | 62006392 | ID=Msa0083030-mRNA-1:exon:20565;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62007609 | 62008127 | 62007609 | ID=Msa0083030-mRNA-1:exon:20566;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62008197 | 62008316 | 62008197 | ID=Msa0083030-mRNA-1:exon:20567;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62008419 | 62008496 | 62008419 | ID=Msa0083030-mRNA-1:exon:20568;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62008683 | 62008859 | 62008683 | ID=Msa0083030-mRNA-1:exon:20569;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62009196 | 62009273 | 62009196 | ID=Msa0083030-mRNA-1:exon:20570;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62009591 | 62009766 | 62009591 | ID=Msa0083030-mRNA-1:exon:20571;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62010428 | 62010592 | 62010428 | ID=Msa0083030-mRNA-1:exon:20572;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62010762 | 62010822 | 62010762 | ID=Msa0083030-mRNA-1:exon:20573;Parent=Msa0083030-mRNA-1 |
chr1_2 | exon | 62011401 | 62011763 | 62011401 | ID=Msa0083030-mRNA-1:exon:20574;Parent=Msa0083030-mRNA-1 |
chr1_2 | five_prime_UTR | 62006392 | 62006578 | 62006392 | ID=Msa0083030-mRNA-1:five_prime_utr;Parent=Msa0083030-mRNA-1 |
chr1_2 | five_prime_UTR | 62007609 | 62007698 | 62007609 | ID=Msa0083030-mRNA-1:five_prime_utr;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62007699 | 62008127 | 62007699 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62008197 | 62008316 | 62008197 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62008419 | 62008496 | 62008419 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62008683 | 62008859 | 62008683 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62009196 | 62009273 | 62009196 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62009591 | 62009766 | 62009591 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62010428 | 62010592 | 62010428 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62010762 | 62010822 | 62010762 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | CDS | 62011401 | 62011604 | 62011401 | ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1 |
chr1_2 | three_prime_UTR | 62011605 | 62011763 | 62011605 | ID=Msa0083030-mRNA-1:three_prime_utr;Parent=Msa0083030-mRNA-1 |
Gene Sequence |
Protein sequence |