AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083030 MtrunA17_Chr1g0196321 98.788 495 6 0 1 495 1 495 0.0 1020
Msa0083030 MtrunA17_Chr2g0286731 69.954 436 127 2 49 484 32 463 0.0 645
Msa0083030 MtrunA17_Chr7g0253861 23.297 279 143 7 224 465 96 340 1.81e-16 80.9
Msa0083030 MtrunA17_Chr4g0067151 26.800 250 164 6 224 464 76 315 9.30e-16 78.2
Msa0083030 MtrunA17_Chr1g0185501 25.311 241 137 5 224 464 109 306 2.40e-15 77.0
Msa0083030 MtrunA17_Chr3g0093681 30.714 140 91 2 203 342 419 552 2.67e-13 72.4
Msa0083030 MtrunA17_Chr1g0172501 30.714 140 91 2 203 342 419 552 8.98e-13 70.5
Msa0083030 MtrunA17_Chr6g0448921 30.667 150 93 3 224 373 57 195 9.18e-13 70.9
Msa0083030 MtrunA17_Chr5g0405851 31.933 119 77 1 224 342 335 449 3.68e-11 65.1
Msa0083030 MtrunA17_Chr8g0352821 23.554 242 135 7 229 468 228 421 5.28e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083030 AT4G03020.1 71.753 485 132 3 10 491 10 492 0.0 724
Msa0083030 AT4G03020.2 71.753 485 132 3 10 491 10 492 0.0 724
Msa0083030 AT4G03020.3 71.753 485 132 3 10 491 10 492 0.0 724
Msa0083030 AT2G43770.1 23.843 281 139 6 224 465 94 338 4.46e-18 85.9
Msa0083030 AT3G49660.1 24.542 273 181 7 208 468 53 312 3.99e-15 76.6
Msa0083030 AT4G02730.1 26.141 241 125 7 224 459 126 318 7.46e-12 67.0
Msa0083030 AT1G11160.1 24.696 247 138 7 224 469 56 255 1.27e-11 67.8
Msa0083030 AT1G11160.2 24.696 247 138 6 224 469 56 255 1.28e-11 67.8
Msa0083030 AT1G11160.4 24.696 247 138 6 224 469 56 255 1.37e-11 67.8
Msa0083030 AT1G11160.3 24.696 247 138 6 224 469 14 213 1.50e-11 67.4
Msa0083030 AT5G08390.1 29.333 150 95 3 224 373 57 195 2.26e-11 67.0
Msa0083030 AT1G61210.3 23.394 218 135 5 265 468 12 211 5.07e-11 65.9
Msa0083030 AT1G61210.1 23.394 218 135 5 265 468 12 211 7.89e-11 65.5
Msa0083030 AT1G61210.2 23.394 218 135 5 265 468 12 211 8.10e-11 65.5
Msa0083030 AT5G23430.3 28.105 153 93 4 224 373 57 195 9.37e-11 65.1
Msa0083030 AT5G23430.2 28.105 153 93 4 224 373 57 195 9.37e-11 65.1
Msa0083030 AT5G23430.1 28.105 153 93 4 224 373 57 195 9.45e-11 65.1

Find 120 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTCTGCTTTGGGTAAT+TGG 0.178793 1_2:-62006461 None:intergenic
AATCTCTTACAGGTGATTTA+TGG 0.181919 1_2:-62011433 None:intergenic
ATGTGCAAATTGTTACAAAA+AGG 0.220757 1_2:-62006499 None:intergenic
CTATGCTCGTTAGCTCTTCT+TGG 0.255220 1_2:+62011477 Msa0083030:CDS
AGCAGATATTTACCTGTAAA+TGG 0.272385 1_2:+62008020 Msa0083030:CDS
ATATGATCTTGAAACAAATA+AGG 0.306324 1_2:+62008811 Msa0083030:CDS
TAGCACTGGAAAATCTAAAA+AGG 0.311940 1_2:+62007809 Msa0083030:CDS
ATATGGTGTTTGACATAATA+AGG 0.315445 1_2:+62011674 Msa0083030:three_prime_UTR
GACGATGGAGGATACTCTTT+TGG 0.318718 1_2:+62008716 Msa0083030:CDS
TTCATGGAATCTTCTGCTTT+GGG 0.326986 1_2:-62006468 None:intergenic
GTTCATGGAATCTTCTGCTT+TGG 0.330166 1_2:-62006469 None:intergenic
CCTTCCCCGTCCTGAACAAT+TGG 0.339582 1_2:-62007967 None:intergenic
GTTGATATTGAAGTTGTATA+TGG 0.348324 1_2:+62011657 Msa0083030:three_prime_UTR
TTTAAATAGCTCAGATGCTT+TGG 0.350837 1_2:+62007641 Msa0083030:five_prime_UTR
AGCATCTTCACCGGGGAAAC+AGG 0.359807 1_2:-62007930 None:intergenic
ACGTATGTCCCAAAGTTTGA+TGG 0.361310 1_2:-62009721 None:intergenic
TGCACTTTACGTTGACCAAA+TGG 0.380038 1_2:+62007716 Msa0083030:CDS
TGCCAACTACAATCTCTTAC+AGG 0.382540 1_2:-62011443 None:intergenic
TTCCAGTGCTAGAATCTTCA+AGG 0.382938 1_2:-62007797 None:intergenic
ATAGTTATGTACGCTATATC+TGG 0.384746 1_2:+62007693 Msa0083030:exon
ACTGATTTAACTGACATCAT+AGG 0.385029 1_2:-62011598 None:intergenic
CTTACTAGATGGCTTTGATC+AGG 0.388290 1_2:-62008299 None:intergenic
ATCTGCTGGGAGCTCTGATA+TGG 0.391469 1_2:+62011523 Msa0083030:CDS
GGCCAGAAGTATATCTATAC+TGG 0.393179 1_2:+62010766 Msa0083030:CDS
ATCCAGTATAGATATACTTC+TGG 0.402582 1_2:-62010768 None:intergenic
TGATACAGACCATACCTCTT+AGG 0.407084 1_2:-62006571 None:intergenic
ATAGGCCAAGGACCATTTAC+AGG 0.415805 1_2:-62008032 None:intergenic
GGCCGCGAATCCAATTGTTC+AGG 0.416503 1_2:+62007957 Msa0083030:CDS
CGTATGCTCGACTAGGCATT+TGG 0.426545 1_2:-62008058 None:intergenic
TACTCATAGCATAACCCATT+TGG 0.431168 1_2:-62007731 None:intergenic
AGATCAGACCATCAAACTTT+GGG 0.433353 1_2:+62009713 Msa0083030:CDS
GGGATGGAGATGTTGTAAAA+TGG 0.435817 1_2:+62011498 Msa0083030:CDS
AAGATCAGACCATCAAACTT+TGG 0.439366 1_2:+62009712 Msa0083030:CDS
TATGCTCGTTAGCTCTTCTT+GGG 0.443104 1_2:+62011478 Msa0083030:CDS
GATGGGAGGGAATTAGTTGC+AGG 0.457956 1_2:+62008764 Msa0083030:CDS
AATTTCAGTAACCGTGTTCG+TGG 0.462360 1_2:+62010420 Msa0083030:intron
ATGTGTTTATGTATATGATT+TGG 0.470295 1_2:+62010801 Msa0083030:CDS
ATCGTACACATTGTAAATGT+TGG 0.472091 1_2:+62008440 Msa0083030:CDS
ATTTACCTGTAAATGGTCCT+TGG 0.479935 1_2:+62008027 Msa0083030:CDS
CGGCCTGCCAGCATCTTCAC+CGG 0.481898 1_2:-62007939 None:intergenic
CAGTCAGTGGCTACGTATAG+AGG 0.482615 1_2:+62010519 Msa0083030:CDS
GCACTTTACGTTGACCAAAT+GGG 0.482739 1_2:+62007717 Msa0083030:CDS
CGAATCCAATTGTTCAGGAC+GGG 0.482995 1_2:+62007962 Msa0083030:CDS
ATCCTTGAAGATTCTAGCAC+TGG 0.486362 1_2:+62007795 Msa0083030:CDS
TCCCCGGTGAAGATGCTGGC+AGG 0.486810 1_2:+62007936 Msa0083030:CDS
CTCGTTAGCTCTTCTTGGGA+TGG 0.489305 1_2:+62011482 Msa0083030:CDS
TGAATGGGATTACAGGTGGA+TGG 0.490487 1_2:+62010455 Msa0083030:CDS
GTCCTGAACAATTGGATTCG+CGG 0.491213 1_2:-62007959 None:intergenic
ATTATTTATGTACAAGATTG+TGG 0.493007 1_2:-62011711 None:intergenic
ACTGGCCATCTTATTTACTC+TGG 0.494750 1_2:+62009229 Msa0083030:CDS
GAAAGAGTTGCCTGTTTCCC+CGG 0.495375 1_2:+62007920 Msa0083030:CDS
TATACAATGTGGACAAAGGT+TGG 0.499477 1_2:+62008213 Msa0083030:CDS
CTGCTAGTACATGATGGGTC+TGG 0.500073 1_2:+62007894 Msa0083030:CDS
TTACTAGATGGCTTTGATCA+GGG 0.501289 1_2:-62008298 None:intergenic
CTCTGATATGGCAGCCTCGT+CGG 0.501439 1_2:+62011535 Msa0083030:CDS
GGACGCTATTTCATTTCAAA+CGG 0.501559 1_2:+62009687 Msa0083030:CDS
CATCAACTGCTAGTACATGA+TGG 0.505267 1_2:+62007888 Msa0083030:CDS
CAAGAAGAGCTAACGAGCAT+AGG 0.505730 1_2:-62011476 None:intergenic
CACCTGTAAGAGATTGTAGT+TGG 0.509483 1_2:+62011441 Msa0083030:CDS
TGTCCCATCAAAACCCCTGC+CGG 0.512728 1_2:-62009627 None:intergenic
GTAACCGTGTTCGTGGATAT+AGG 0.517492 1_2:+62010427 Msa0083030:intron
CCAATTGTTCAGGACGGGGA+AGG 0.517976 1_2:+62007967 Msa0083030:CDS
TGTTTCCCCGGTGAAGATGC+TGG 0.519063 1_2:+62007932 Msa0083030:CDS
AATGCTAAAGACAAGCCGGC+AGG 0.520946 1_2:+62009612 Msa0083030:CDS
TTTATTGATACCCGTGGAGA+TGG 0.521044 1_2:+62009666 Msa0083030:CDS
TTTAGTGGTCACCTAAAAGC+TGG 0.522377 1_2:-62010582 None:intergenic
CAATAAATGTAATGCCCTCA+AGG 0.532155 1_2:-62009650 None:intergenic
AAGAGCATACCTGGTAACAT+TGG 0.534358 1_2:-62009754 None:intergenic
GTTGTAAAATGGCAATCTGC+TGG 0.535124 1_2:+62011509 Msa0083030:CDS
TGCTAAAGACAAGCCGGCAG+GGG 0.535291 1_2:+62009614 Msa0083030:CDS
GACTCTAGTGATACTGAAGA+TGG 0.540581 1_2:+62007765 Msa0083030:CDS
CAAGAGTGCGTAAGACTGAA+TGG 0.543044 1_2:-62010542 None:intergenic
GATGATTCATTACAGGTGAG+TGG 0.544157 1_2:+62011386 Msa0083030:intron
CGACTAGGCATTTGGTCGAT+AGG 0.547791 1_2:-62008050 None:intergenic
TACTAGATGGCTTTGATCAG+GGG 0.548826 1_2:-62008297 None:intergenic
GCAGGAGATCCACGATGGGT+TGG 0.550911 1_2:+62008679 Msa0083030:intron
GGCCTGCCAGCATCTTCACC+GGG 0.553632 1_2:-62007938 None:intergenic
AAGAAGAGCTAACGAGCATA+GGG 0.554781 1_2:-62011475 None:intergenic
ATGCTAAAGACAAGCCGGCA+GGG 0.560101 1_2:+62009613 Msa0083030:CDS
CACTTCCAGAGTAAATAAGA+TGG 0.565103 1_2:-62009234 None:intergenic
TTTGCAGGATTGACAAACAC+AGG 0.573696 1_2:+62007602 Msa0083030:intron
CTTAAATGCTAAAGACAAGC+CGG 0.577168 1_2:+62009608 Msa0083030:CDS
ACATTTACAATGTGTACGAT+AGG 0.581114 1_2:-62008437 None:intergenic
ATCAACTGCTAGTACATGAT+GGG 0.581257 1_2:+62007889 Msa0083030:CDS
TTGTAAAATGGCAATCTGCT+GGG 0.586915 1_2:+62011510 Msa0083030:CDS
ACAGACCATACCTCTTAGGA+TGG 0.590479 1_2:-62006567 None:intergenic
GAAATAGCGTCCATCTCCAC+GGG 0.592069 1_2:-62009676 None:intergenic
TGAAATAGCGTCCATCTCCA+CGG 0.592795 1_2:-62009677 None:intergenic
ATGAGGTGTTGATTTCAACT+TGG 0.593854 1_2:-62007868 None:intergenic
AAATGTCATCCAATGTTACC+AGG 0.595793 1_2:+62009745 Msa0083030:CDS
AAAATATACAATGTGGACAA+AGG 0.599948 1_2:+62008209 Msa0083030:CDS
AGCCTCGTCGGTTAAGAAGA+GGG 0.600390 1_2:+62011547 Msa0083030:CDS
CAGCCTCGTCGGTTAAGAAG+AGG 0.601348 1_2:+62011546 Msa0083030:CDS
GAATTAGTTGCAGGAACTAG+TGG 0.606878 1_2:+62008773 Msa0083030:CDS
TTCTAACTAAGAGTTTGAGA+TGG 0.609877 1_2:+62008252 Msa0083030:CDS
CTAACGAGCATAGGGTGGAA+AGG 0.614104 1_2:-62011467 None:intergenic
TAGTACATGATGGGTCTGGA+AGG 0.615748 1_2:+62007898 Msa0083030:CDS
GCGAATCCAATTGTTCAGGA+CGG 0.617169 1_2:+62007961 Msa0083030:CDS
TTGCAGGATTGACAAACACA+GGG 0.622055 1_2:+62007603 Msa0083030:intron
TGAGACACGTATGCTCGACT+AGG 0.624491 1_2:-62008065 None:intergenic
AACTCCTATATCCACGAACA+CGG 0.626589 1_2:-62010431 None:intergenic
GGCATTTGGTCGATAGGCCA+AGG 0.629750 1_2:-62008044 None:intergenic
GAATCCAATTGTTCAGGACG+GGG 0.630776 1_2:+62007963 Msa0083030:CDS
AGTTTCATCAGCAAAACATA+CGG 0.631088 1_2:-62009209 None:intergenic
GTGTACGATAGGTGACATGC+TGG 0.632627 1_2:-62008426 None:intergenic
TGCTATGAGTAGATTAGACG+TGG 0.632706 1_2:+62007743 Msa0083030:CDS
AAGAGCTAACGAGCATAGGG+TGG 0.635204 1_2:-62011472 None:intergenic
TCATGTACTAGCAGTTGATG+AGG 0.637096 1_2:-62007885 None:intergenic
ATTACATTTATTGATACCCG+TGG 0.637357 1_2:+62009660 Msa0083030:CDS
CAAAAGATGACAGCGATCAG+CGG 0.644029 1_2:-62007997 None:intergenic
AAGTGATGATAGTTTCTGCA+AGG 0.652431 1_2:+62009252 Msa0083030:CDS
AATATGCAGGAGATCCACGA+TGG 0.665955 1_2:+62008674 Msa0083030:intron
TCATCCTTGTGATCAGTCAG+TGG 0.674274 1_2:+62010506 Msa0083030:CDS
GTAGCCACTGACTGATCACA+AGG 0.680555 1_2:-62010510 None:intergenic
CATAACTATTCAAATCAACA+CGG 0.685486 1_2:-62007679 None:intergenic
ATATGCAGGAGATCCACGAT+GGG 0.686383 1_2:+62008675 Msa0083030:intron
AGAGTCACTAGCAAATGTGA+CGG 0.704087 1_2:+62008475 Msa0083030:CDS
TACCCTCTTCTTAACCGACG+AGG 0.713771 1_2:-62011549 None:intergenic
GCCTGCCAGCATCTTCACCG+GGG 0.715871 1_2:-62007937 None:intergenic
TGCAGGATTGACAAACACAG+GGG 0.738451 1_2:+62007604 Msa0083030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAAATTAATTTATTTTTC+AGG + chr1_2:62008175-62008194 Msa0083030:intron 10.0%
!!! CTAAATTAATTTATTTTTCA+GGG + chr1_2:62008176-62008195 Msa0083030:intron 10.0%
!! AAGAAAAATAATTGATTAAA+AGG - chr1_2:62008350-62008369 None:intergenic 10.0%
!! AAATAAATTATAAAACTTGA+GGG - chr1_2:62010941-62010960 None:intergenic 10.0%
!! AAAATAAATTATAAAACTTG+AGG - chr1_2:62010942-62010961 None:intergenic 10.0%
!! AATAATCACATAGATTAAAT+GGG - chr1_2:62006726-62006745 None:intergenic 15.0%
!! TAATAATCACATAGATTAAA+TGG - chr1_2:62006727-62006746 None:intergenic 15.0%
!!! ACAATTTTTTCTTATCTATA+TGG + chr1_2:62007533-62007552 Msa0083030:intron 15.0%
!! CTAAATAGATGTAATATTTA+TGG - chr1_2:62008876-62008895 None:intergenic 15.0%
!!! AGATTTTATGTTTTTATCAT+CGG + chr1_2:62010849-62010868 Msa0083030:intron 15.0%
!! AAATAGTATAATCTATAACT+AGG + chr1_2:62010883-62010902 Msa0083030:intron 15.0%
!! AATAGTATAATCTATAACTA+GGG + chr1_2:62010884-62010903 Msa0083030:intron 15.0%
!! AATAAATTATAAAACTTGAG+GGG - chr1_2:62010940-62010959 None:intergenic 15.0%
!! TTGATAAATTATTCAATCAT+TGG - chr1_2:62010994-62011013 None:intergenic 15.0%
!!! AAAAGATGAAATTTAAGATT+TGG + chr1_2:62011048-62011067 Msa0083030:intron 15.0%
!!! TGTAATGTATTATTTTTAAG+CGG + chr1_2:62011288-62011307 Msa0083030:intron 15.0%
!!! GAATTTGATTCTGTAAATTT+TGG - chr1_2:62006657-62006676 None:intergenic 20.0%
!!! AAGTTAGTTAGTTTGTTATT+TGG + chr1_2:62007280-62007299 Msa0083030:intron 20.0%
!!! AGTTAGTTAGTTTGTTATTT+GGG + chr1_2:62007281-62007300 Msa0083030:intron 20.0%
!! ATATGATCTTGAAACAAATA+AGG + chr1_2:62008811-62008830 Msa0083030:CDS 20.0%
!! TAAATTATAGATTCAGACAA+TGG - chr1_2:62008915-62008934 None:intergenic 20.0%
!! TTGTCTGAATCTATAATTTA+TGG + chr1_2:62008915-62008934 Msa0083030:intron 20.0%
!! TCTAATGTACAAAATTGTTT+AGG + chr1_2:62009569-62009588 Msa0083030:intron 20.0%
!! TTCATATAATTCAACAGATA+TGG - chr1_2:62009795-62009814 None:intergenic 20.0%
!! TAAATTAGACGACTTATATT+AGG + chr1_2:62009999-62010018 Msa0083030:intron 20.0%
!! AATTATGTTGTAAAATTGTG+AGG + chr1_2:62010114-62010133 Msa0083030:intron 20.0%
!!! AAACTCTGTATTTTTCATTT+TGG - chr1_2:62010198-62010217 None:intergenic 20.0%
!! ACTGAAATTTAGAGAAAAAT+CGG - chr1_2:62010409-62010428 None:intergenic 20.0%
!! CTTGAGCATATTAAAATTAT+TGG + chr1_2:62010686-62010705 Msa0083030:intron 20.0%
!! ATGTGTTTATGTATATGATT+TGG + chr1_2:62010801-62010820 Msa0083030:CDS 20.0%
!! ATAGTATAATCTATAACTAG+GGG + chr1_2:62010885-62010904 Msa0083030:intron 20.0%
!! ATTATTTATGTACAAGATTG+TGG - chr1_2:62011714-62011733 None:intergenic 20.0%
! TGTGCAAATTGTTACAAAAA+GGG - chr1_2:62006501-62006520 None:intergenic 25.0%
! ATGTGCAAATTGTTACAAAA+AGG - chr1_2:62006502-62006521 None:intergenic 25.0%
!!! AATTTTTGGTTTGTCTGATA+TGG - chr1_2:62006547-62006566 None:intergenic 25.0%
!! TTACAGAAAAGTACAAAAAC+AGG - chr1_2:62006994-62007013 None:intergenic 25.0%
! ATTCATAGTTTACTGATAAG+TGG + chr1_2:62007172-62007191 Msa0083030:intron 25.0%
! TTCATAGTTTACTGATAAGT+GGG + chr1_2:62007173-62007192 Msa0083030:intron 25.0%
!!! GAATTGGTTAGTTTGTTATT+TGG + chr1_2:62007325-62007344 Msa0083030:intron 25.0%
!!! TATCTTTTTACGTTTTAACC+AGG + chr1_2:62007499-62007518 Msa0083030:intron 25.0%
! AAATTGTTAAAACAACAACC+TGG - chr1_2:62007520-62007539 None:intergenic 25.0%
! AAAATGTATGACGAAACAAT+AGG - chr1_2:62007580-62007599 None:intergenic 25.0%
! CATAACTATTCAAATCAACA+CGG - chr1_2:62007682-62007701 None:intergenic 25.0%
! AAACTATAGATGCATACATA+GGG - chr1_2:62008151-62008170 None:intergenic 25.0%
! AAAACTATAGATGCATACAT+AGG - chr1_2:62008152-62008171 None:intergenic 25.0%
!!! CCACATTGTATATTTTTATG+TGG - chr1_2:62008205-62008224 None:intergenic 25.0%
! CCACATAAAAATATACAATG+TGG + chr1_2:62008202-62008221 Msa0083030:CDS 25.0%
! AAAATATACAATGTGGACAA+AGG + chr1_2:62008209-62008228 Msa0083030:CDS 25.0%
!! AACTGTCATAGTTTTTCTTA+TGG + chr1_2:62008374-62008393 Msa0083030:intron 25.0%
! TTTCAGTTCTTATAATATGC+AGG + chr1_2:62008661-62008680 Msa0083030:intron 25.0%
!! CTATTTAGCTTCATATGATT+TGG + chr1_2:62008888-62008907 Msa0083030:intron 25.0%
!! TGGAGAAATCATTTTCATAT+TGG + chr1_2:62009098-62009117 Msa0083030:intron 25.0%
!! GGAGAAATCATTTTCATATT+GGG + chr1_2:62009099-62009118 Msa0083030:intron 25.0%
!! AAATCATTTTCATATTGGGA+TGG + chr1_2:62009103-62009122 Msa0083030:intron 25.0%
!! AAAGTATTTACACATACCAT+AGG + chr1_2:62009140-62009159 Msa0083030:intron 25.0%
!! ACCATAGGTTTTCTAAATTT+TGG + chr1_2:62009155-62009174 Msa0083030:intron 25.0%
! ACCAAAATTTAGAAAACCTA+TGG - chr1_2:62009159-62009178 None:intergenic 25.0%
! TCTATGTGAAATCAAAAGTT+GGG - chr1_2:62009347-62009366 None:intergenic 25.0%
! TTCTATGTGAAATCAAAAGT+TGG - chr1_2:62009348-62009367 None:intergenic 25.0%
! CAGAAAGTTTATATTGTAGT+TGG + chr1_2:62009502-62009521 Msa0083030:intron 25.0%
! GTATACTTGTGAATTATCTA+TGG + chr1_2:62010141-62010160 Msa0083030:intron 25.0%
!! ATATAGAATTAGCTTAGTCT+CGG - chr1_2:62010354-62010373 None:intergenic 25.0%
! GAAAATGAAGAATGATGAAA+AGG - chr1_2:62010617-62010636 None:intergenic 25.0%
! TCCAAATATGAAAATCAAAG+GGG - chr1_2:62010651-62010670 None:intergenic 25.0%
! GTCCAAATATGAAAATCAAA+GGG - chr1_2:62010652-62010671 None:intergenic 25.0%
! TGTCCAAATATGAAAATCAA+AGG - chr1_2:62010653-62010672 None:intergenic 25.0%
! AATTTGAAGAAAACAACATC+AGG - chr1_2:62010737-62010756 None:intergenic 25.0%
! TAGTATAATCTATAACTAGG+GGG + chr1_2:62010886-62010905 Msa0083030:intron 25.0%
!! CTAATATTTTCATGCAGAAA+TGG - chr1_2:62011018-62011037 None:intergenic 25.0%
!! ATGAAATTTAAGATTTGGAG+TGG + chr1_2:62011053-62011072 Msa0083030:intron 25.0%
! GAGATACTGCTTATAAAATT+CGG - chr1_2:62011257-62011276 None:intergenic 25.0%
!!! CAAGGCATTGTATTTTTATT+GGG - chr1_2:62011350-62011369 None:intergenic 25.0%
!! AAACTTTGATGATTCATTAC+AGG + chr1_2:62011379-62011398 Msa0083030:intron 25.0%
! GTTGATATTGAAGTTGTATA+TGG + chr1_2:62011657-62011676 Msa0083030:three_prime_UTR 25.0%
! ATATGGTGTTTGACATAATA+AGG + chr1_2:62011674-62011693 Msa0083030:three_prime_UTR 25.0%
AAAGTGAAAGTCAACTGAAA+GGG - chr1_2:62006691-62006710 None:intergenic 30.0%
TAAAGTGAAAGTCAACTGAA+AGG - chr1_2:62006692-62006711 None:intergenic 30.0%
TGAATACTGCATCAATTAAG+AGG - chr1_2:62006761-62006780 None:intergenic 30.0%
AACAGTGACTAAAAATTCAC+AGG - chr1_2:62006805-62006824 None:intergenic 30.0%
ATGATGTTTGTCAAATTCCT+TGG + chr1_2:62006959-62006978 Msa0083030:intron 30.0%
AAGTACAAAAACAGGTTCAT+GGG - chr1_2:62006986-62007005 None:intergenic 30.0%
AAAGTACAAAAACAGGTTCA+TGG - chr1_2:62006987-62007006 None:intergenic 30.0%
ATACTAGTGTATCAATATCG+GGG - chr1_2:62007086-62007105 None:intergenic 30.0%
CATACTAGTGTATCAATATC+GGG - chr1_2:62007087-62007106 None:intergenic 30.0%
GCATACTAGTGTATCAATAT+CGG - chr1_2:62007088-62007107 None:intergenic 30.0%
TTGATACACTAGTATGCATA+TGG + chr1_2:62007091-62007110 Msa0083030:intron 30.0%
TATGCATATGGTATTCACTA+GGG + chr1_2:62007103-62007122 Msa0083030:intron 30.0%
!! AATTTTATGCATTGAGTTGC+CGG + chr1_2:62007144-62007163 Msa0083030:intron 30.0%
AGTAAACTATGAATCATACC+CGG - chr1_2:62007166-62007185 None:intergenic 30.0%
!!! GTTTTGAGTTGTTAGAGAAT+TGG + chr1_2:62007309-62007328 Msa0083030:intron 30.0%
AAACACATGATATTTGATCC+CGG - chr1_2:62007464-62007483 None:intergenic 30.0%
!!! CGTCATACATTTTATTTTGC+AGG + chr1_2:62007587-62007606 Msa0083030:intron 30.0%
TTTAAATAGCTCAGATGCTT+TGG + chr1_2:62007641-62007660 Msa0083030:five_prime_UTR 30.0%
ATAGTTATGTACGCTATATC+TGG + chr1_2:62007693-62007712 Msa0083030:exon 30.0%
! TAGCACTGGAAAATCTAAAA+AGG + chr1_2:62007809-62007828 Msa0083030:CDS 30.0%
AGCAGATATTTACCTGTAAA+TGG + chr1_2:62008020-62008039 Msa0083030:CDS 30.0%
TAAAAGTGAAAATGCTTACC+TGG - chr1_2:62008127-62008146 None:intergenic 30.0%
TTCTAACTAAGAGTTTGAGA+TGG + chr1_2:62008252-62008271 Msa0083030:CDS 30.0%
CATTTGCATTCTTCAATTTC+AGG + chr1_2:62008397-62008416 Msa0083030:intron 30.0%
ACATTTACAATGTGTACGAT+AGG - chr1_2:62008440-62008459 None:intergenic 30.0%
ATCGTACACATTGTAAATGT+TGG + chr1_2:62008440-62008459 Msa0083030:CDS 30.0%
CCAAAGATCATAATTCAATG+TGG - chr1_2:62008504-62008523 None:intergenic 30.0%
CCACATTGAATTATGATCTT+TGG + chr1_2:62008501-62008520 Msa0083030:intron 30.0%
TCAGAGGAATAGATACAAAT+TGG + chr1_2:62008563-62008582 Msa0083030:intron 30.0%
!!! TTTTCTAAGATGTCTGTAAC+TGG + chr1_2:62008587-62008606 Msa0083030:intron 30.0%
ATGAAAAGAACACCATCAAA+CGG - chr1_2:62008628-62008647 None:intergenic 30.0%
! GATTTTTCATCAAATGACGA+TGG + chr1_2:62008701-62008720 Msa0083030:CDS 30.0%
! TCTGTGAAATTTTCAACAGA+TGG + chr1_2:62008746-62008765 Msa0083030:CDS 30.0%
! CTGTGAAATTTTCAACAGAT+GGG + chr1_2:62008747-62008766 Msa0083030:CDS 30.0%
AGTTTCATCAGCAAAACATA+CGG - chr1_2:62009212-62009231 None:intergenic 30.0%
AGGTATGTTCTACAATAAGA+TGG + chr1_2:62009272-62009291 Msa0083030:intron 30.0%
ATCTCATACTTATATCGTCA+AGG + chr1_2:62009397-62009416 Msa0083030:intron 30.0%
TGTACAAAATTGTTTAGGTC+TGG + chr1_2:62009574-62009593 Msa0083030:intron 30.0%
GTACAAAATTGTTTAGGTCT+GGG + chr1_2:62009575-62009594 Msa0083030:intron 30.0%
ATTACATTTATTGATACCCG+TGG + chr1_2:62009660-62009679 Msa0083030:CDS 30.0%
TGGGAAAGATAAAATTCATG+TGG + chr1_2:62009871-62009890 Msa0083030:intron 30.0%
AGTAAAATACACCTTGTTCA+TGG + chr1_2:62009926-62009945 Msa0083030:intron 30.0%
ACTCTAAATTTCCATGAACA+AGG - chr1_2:62009940-62009959 None:intergenic 30.0%
!! AACTCTAGTTAACTTGTATC+TGG + chr1_2:62009974-62009993 Msa0083030:intron 30.0%
CTAATGCATAATAGAGATAC+AGG + chr1_2:62010063-62010082 Msa0083030:intron 30.0%
!!! TGGATATAGGAGTTTTGAAT+GGG + chr1_2:62010440-62010459 Msa0083030:CDS 30.0%
TGAAGAATGATGAAAAGGTA+AGG - chr1_2:62010612-62010631 None:intergenic 30.0%
!! TCCCCTTTGATTTTCATATT+TGG + chr1_2:62010647-62010666 Msa0083030:intron 30.0%
TTTCTTCAAATTTACAGCAC+TGG + chr1_2:62010745-62010764 Msa0083030:intron 30.0%
ATCCAGTATAGATATACTTC+TGG - chr1_2:62010771-62010790 None:intergenic 30.0%
!! TTTAGGCATTTTGCTATGTT+CGG - chr1_2:62011108-62011127 None:intergenic 30.0%
!! TAGTAGTTTGCTGATTGTTT+AGG - chr1_2:62011125-62011144 None:intergenic 30.0%
!!! GAGTATTAGAGTTTTGTTCA+TGG + chr1_2:62011190-62011209 Msa0083030:intron 30.0%
TAAAATTCGGTTATGAACAG+CGG - chr1_2:62011244-62011263 None:intergenic 30.0%
!!! GCAAGGCATTGTATTTTTAT+TGG - chr1_2:62011351-62011370 None:intergenic 30.0%
TCAAAGTTTCTTATTGAGCA+AGG - chr1_2:62011368-62011387 None:intergenic 30.0%
AATCTCTTACAGGTGATTTA+TGG - chr1_2:62011436-62011455 None:intergenic 30.0%
! ACTGATTTAACTGACATCAT+AGG - chr1_2:62011601-62011620 None:intergenic 30.0%
! AATCTTCTGCTTTGGGTAAT+TGG - chr1_2:62006464-62006483 None:intergenic 35.0%
TTCATGGAATCTTCTGCTTT+GGG - chr1_2:62006471-62006490 None:intergenic 35.0%
CAAAAAGGGAAACATGTTCA+TGG - chr1_2:62006487-62006506 None:intergenic 35.0%
ACCAAAAATTCCATCCTAAG+AGG + chr1_2:62006557-62006576 Msa0083030:five_prime_UTR 35.0%
! ACCTCTTAGGATGGAATTTT+TGG - chr1_2:62006561-62006580 None:intergenic 35.0%
AAATTCCATCCTAAGAGGTA+TGG + chr1_2:62006562-62006581 Msa0083030:intron 35.0%
AAGTGAAAGTCAACTGAAAG+GGG - chr1_2:62006690-62006709 None:intergenic 35.0%
!! TGTTGATGATGTTGTGGAAA+GGG + chr1_2:62006821-62006840 Msa0083030:intron 35.0%
! ATGTTGTGGAAAGGGTTTTT+GGG + chr1_2:62006829-62006848 Msa0083030:intron 35.0%
AAACAACGACTGAAAAGAAG+TGG + chr1_2:62006896-62006915 Msa0083030:intron 35.0%
AGAAAACCATCCCCATTATA+AGG + chr1_2:62007031-62007050 Msa0083030:intron 35.0%
TGGTTCTTTCGCCTTATAAT+GGG - chr1_2:62007045-62007064 None:intergenic 35.0%
GTATGCATATGGTATTCACT+AGG + chr1_2:62007102-62007121 Msa0083030:intron 35.0%
!! ATTTTATGCATTGAGTTGCC+GGG + chr1_2:62007145-62007164 Msa0083030:intron 35.0%
TAGTTTACTGATAAGTGGGT+AGG + chr1_2:62007177-62007196 Msa0083030:intron 35.0%
! TAGAGAGTATGTGCATAAAC+AGG + chr1_2:62007354-62007373 Msa0083030:intron 35.0%
TGATATTTGATCCCGGATTA+CGG - chr1_2:62007457-62007476 None:intergenic 35.0%
ATCAACACGGAAAAATGTTG+CGG - chr1_2:62007669-62007688 None:intergenic 35.0%
TACTCATAGCATAACCCATT+TGG - chr1_2:62007734-62007753 None:intergenic 35.0%
!! ATGAGGTGTTGATTTCAACT+TGG - chr1_2:62007871-62007890 None:intergenic 35.0%
ATCAACTGCTAGTACATGAT+GGG + chr1_2:62007889-62007908 Msa0083030:CDS 35.0%
ATTTACCTGTAAATGGTCCT+TGG + chr1_2:62008027-62008046 Msa0083030:CDS 35.0%
!!! ATGGTTCACTTTTTGTTGCT+GGG + chr1_2:62008099-62008118 Msa0083030:CDS 35.0%
TATACAATGTGGACAAAGGT+TGG + chr1_2:62008213-62008232 Msa0083030:CDS 35.0%
!! TTACTAGATGGCTTTGATCA+GGG - chr1_2:62008301-62008320 None:intergenic 35.0%
AAAGCCATCTAGTAAGTAAC+TGG + chr1_2:62008306-62008325 Msa0083030:intron 35.0%
GTTTCCAGTTACTTACTAGA+TGG - chr1_2:62008313-62008332 None:intergenic 35.0%
!! GTTTTGAATGCTATGATCAG+AGG + chr1_2:62008547-62008566 Msa0083030:intron 35.0%
! TTTTCATCAAATGACGATGG+AGG + chr1_2:62008704-62008723 Msa0083030:CDS 35.0%
! TGAAATTTTCAACAGATGGG+AGG + chr1_2:62008750-62008769 Msa0083030:CDS 35.0%
! GAAATTTTCAACAGATGGGA+GGG + chr1_2:62008751-62008770 Msa0083030:CDS 35.0%
ATTTATGGTGCAGTTTGAAG+CGG + chr1_2:62008930-62008949 Msa0083030:intron 35.0%
! AGTTTGCTTAGCTGCATAAT+AGG + chr1_2:62008981-62009000 Msa0083030:intron 35.0%
GACACTGTCAATAGATTAAG+TGG - chr1_2:62009014-62009033 None:intergenic 35.0%
!! TTGGTTTTCATTTTACGTGC+AGG + chr1_2:62009174-62009193 Msa0083030:intron 35.0%
! GTATGTTTTGCTGATGAAAC+TGG + chr1_2:62009211-62009230 Msa0083030:CDS 35.0%
CACTTCCAGAGTAAATAAGA+TGG - chr1_2:62009237-62009256 None:intergenic 35.0%
AAGTGATGATAGTTTCTGCA+AGG + chr1_2:62009252-62009271 Msa0083030:CDS 35.0%
CAAAAGTTGGGATACTCAAA+AGG - chr1_2:62009335-62009354 None:intergenic 35.0%
! GTAATGAACACCTTTTACAC+AGG + chr1_2:62009368-62009387 Msa0083030:intron 35.0%
AGATTGAACTCCTGTGTAAA+AGG - chr1_2:62009381-62009400 None:intergenic 35.0%
CTTAAATGCTAAAGACAAGC+CGG + chr1_2:62009608-62009627 Msa0083030:CDS 35.0%
CAATAAATGTAATGCCCTCA+AGG - chr1_2:62009653-62009672 None:intergenic 35.0%
! GGACGCTATTTCATTTCAAA+CGG + chr1_2:62009687-62009706 Msa0083030:CDS 35.0%
AAGATCAGACCATCAAACTT+TGG + chr1_2:62009712-62009731 Msa0083030:CDS 35.0%
AGATCAGACCATCAAACTTT+GGG + chr1_2:62009713-62009732 Msa0083030:CDS 35.0%
AAATGTCATCCAATGTTACC+AGG + chr1_2:62009745-62009764 Msa0083030:CDS 35.0%
CAACAGATATGGATACCAAA+AGG - chr1_2:62009784-62009803 None:intergenic 35.0%
ACCTTATAGAAATGTGTGCT+CGG - chr1_2:62010094-62010113 None:intergenic 35.0%
!!! GTGGATATAGGAGTTTTGAA+TGG + chr1_2:62010439-62010458 Msa0083030:CDS 35.0%
! TGATTCAAGTCTTTTGCTTG+TGG - chr1_2:62010489-62010508 None:intergenic 35.0%
TTGTAAAATGGCAATCTGCT+GGG + chr1_2:62011510-62011529 Msa0083030:CDS 35.0%
GTTCATGGAATCTTCTGCTT+TGG - chr1_2:62006472-62006491 None:intergenic 40.0%
TGATACAGACCATACCTCTT+AGG - chr1_2:62006574-62006593 None:intergenic 40.0%
!! AGTCACTGTTGATGATGTTG+TGG + chr1_2:62006815-62006834 Msa0083030:intron 40.0%
!! CTGTTGATGATGTTGTGGAA+AGG + chr1_2:62006820-62006839 Msa0083030:intron 40.0%
! GATGTTGTGGAAAGGGTTTT+TGG + chr1_2:62006828-62006847 Msa0083030:intron 40.0%
! TGTTGTGGAAAGGGTTTTTG+GGG + chr1_2:62006830-62006849 Msa0083030:intron 40.0%
GGTTCTTTCGCCTTATAATG+GGG - chr1_2:62007044-62007063 None:intergenic 40.0%
GTGGTTCTTTCGCCTTATAA+TGG - chr1_2:62007046-62007065 None:intergenic 40.0%
TGCATAAACAGGAGAACACA+AGG + chr1_2:62007365-62007384 Msa0083030:intron 40.0%
AGACACAATTGACCGTAATC+CGG + chr1_2:62007442-62007461 Msa0083030:intron 40.0%
TTTGCAGGATTGACAAACAC+AGG + chr1_2:62007602-62007621 Msa0083030:intron 40.0%
TTGCAGGATTGACAAACACA+GGG + chr1_2:62007603-62007622 Msa0083030:intron 40.0%
TGCACTTTACGTTGACCAAA+TGG + chr1_2:62007716-62007735 Msa0083030:CDS 40.0%
GCACTTTACGTTGACCAAAT+GGG + chr1_2:62007717-62007736 Msa0083030:CDS 40.0%
TGCTATGAGTAGATTAGACG+TGG + chr1_2:62007743-62007762 Msa0083030:CDS 40.0%
GACTCTAGTGATACTGAAGA+TGG + chr1_2:62007765-62007784 Msa0083030:CDS 40.0%
ATCCTTGAAGATTCTAGCAC+TGG + chr1_2:62007795-62007814 Msa0083030:CDS 40.0%
TTCCAGTGCTAGAATCTTCA+AGG - chr1_2:62007800-62007819 None:intergenic 40.0%
! TCATGTACTAGCAGTTGATG+AGG - chr1_2:62007888-62007907 None:intergenic 40.0%
CATCAACTGCTAGTACATGA+TGG + chr1_2:62007888-62007907 Msa0083030:CDS 40.0%
!!! GATGGTTCACTTTTTGTTGC+TGG + chr1_2:62008098-62008117 Msa0083030:CDS 40.0%
!! TACTAGATGGCTTTGATCAG+GGG - chr1_2:62008300-62008319 None:intergenic 40.0%
!! CTTACTAGATGGCTTTGATC+AGG - chr1_2:62008302-62008321 None:intergenic 40.0%
AGAGTCACTAGCAAATGTGA+CGG + chr1_2:62008475-62008494 Msa0083030:CDS 40.0%
CTGTAACTGGTGTATGTACA+AGG + chr1_2:62008600-62008619 Msa0083030:intron 40.0%
ATGTACAAGGTTCCGTTTGA+TGG + chr1_2:62008613-62008632 Msa0083030:intron 40.0%
ATGAAAAATCCAACCCATCG+TGG - chr1_2:62008691-62008710 None:intergenic 40.0%
GAATTAGTTGCAGGAACTAG+TGG + chr1_2:62008773-62008792 Msa0083030:CDS 40.0%
! TTTATGGTGCAGTTTGAAGC+GGG + chr1_2:62008931-62008950 Msa0083030:intron 40.0%
! CATATTGGGATGGCTCTATA+TGG + chr1_2:62009113-62009132 Msa0083030:intron 40.0%
! ACTGGCCATCTTATTTACTC+TGG + chr1_2:62009229-62009248 Msa0083030:CDS 40.0%
AGTTGGGATACTCAAAAGGA+GGG - chr1_2:62009331-62009350 None:intergenic 40.0%
AAGTTGGGATACTCAAAAGG+AGG - chr1_2:62009332-62009351 None:intergenic 40.0%
!! GTTGTTTTGTTCTTTCCCTC+TGG + chr1_2:62009526-62009545 Msa0083030:intron 40.0%
TTTATTGATACCCGTGGAGA+TGG + chr1_2:62009666-62009685 Msa0083030:CDS 40.0%
ACGTATGTCCCAAAGTTTGA+TGG - chr1_2:62009724-62009743 None:intergenic 40.0%
! AAGAGCATACCTGGTAACAT+TGG - chr1_2:62009757-62009776 None:intergenic 40.0%
! AAAGGCTAAAAGAGCATACC+TGG - chr1_2:62009766-62009785 None:intergenic 40.0%
!! GGTATGCTCTTTTAGCCTTT+TGG + chr1_2:62009766-62009785 Msa0083030:intron 40.0%
AACCATAAGTCTGTGACTGA+TGG + chr1_2:62010025-62010044 Msa0083030:intron 40.0%
ACCATAAGTCTGTGACTGAT+GGG + chr1_2:62010026-62010045 Msa0083030:intron 40.0%
TCCGAGCACACATTTCTATA+AGG + chr1_2:62010090-62010109 Msa0083030:intron 40.0%
GACACAGAATCATCGTTGAT+TGG - chr1_2:62010266-62010285 None:intergenic 40.0%
AGGAACAGACAACATTAGCT+AGG - chr1_2:62010329-62010348 None:intergenic 40.0%
! GAATTAGCTTAGTCTCGGAT+AGG - chr1_2:62010349-62010368 None:intergenic 40.0%
AATTTCAGTAACCGTGTTCG+TGG + chr1_2:62010420-62010439 Msa0083030:intron 40.0%
AACTCCTATATCCACGAACA+CGG - chr1_2:62010434-62010453 None:intergenic 40.0%
!!! GGAGTTTTGAATGGGATTAC+AGG + chr1_2:62010448-62010467 Msa0083030:CDS 40.0%
!! GTTTTGAATGGGATTACAGG+TGG + chr1_2:62010451-62010470 Msa0083030:CDS 40.0%
! TTCAAGTCTTTTGCTTGTGG+CGG - chr1_2:62010486-62010505 None:intergenic 40.0%
!! GCTTTTTCTCTCCAGCTTTT+AGG + chr1_2:62010571-62010590 Msa0083030:CDS 40.0%
TTTAGTGGTCACCTAAAAGC+TGG - chr1_2:62010585-62010604 None:intergenic 40.0%
!! CTTTTAGGTGACCACTAAAC+TGG + chr1_2:62010586-62010605 Msa0083030:intron 40.0%
AAAAGGTAAGGCCAGTTTAG+TGG - chr1_2:62010600-62010619 None:intergenic 40.0%
! GGCCAGAAGTATATCTATAC+TGG + chr1_2:62010766-62010785 Msa0083030:CDS 40.0%
AATCTATAACTAGGGGGAAG+AGG + chr1_2:62010892-62010911 Msa0083030:intron 40.0%
ATCTATAACTAGGGGGAAGA+GGG + chr1_2:62010893-62010912 Msa0083030:intron 40.0%
TCTCCTTGAACTTTGATTCC+TGG + chr1_2:62011213-62011232 Msa0083030:intron 40.0%
GATGATTCATTACAGGTGAG+TGG + chr1_2:62011386-62011405 Msa0083030:intron 40.0%
CACCTGTAAGAGATTGTAGT+TGG + chr1_2:62011441-62011460 Msa0083030:CDS 40.0%
TGCCAACTACAATCTCTTAC+AGG - chr1_2:62011446-62011465 None:intergenic 40.0%
AAGAAGAGCTAACGAGCATA+GGG - chr1_2:62011478-62011497 None:intergenic 40.0%
! TATGCTCGTTAGCTCTTCTT+GGG + chr1_2:62011478-62011497 Msa0083030:CDS 40.0%
GGGATGGAGATGTTGTAAAA+TGG + chr1_2:62011498-62011517 Msa0083030:CDS 40.0%
GTTGTAAAATGGCAATCTGC+TGG + chr1_2:62011509-62011528 Msa0083030:CDS 40.0%
ACAGACCATACCTCTTAGGA+TGG - chr1_2:62006570-62006589 None:intergenic 45.0%
!!! AAGGGTTTTTGGGGTCATAG+AGG + chr1_2:62006839-62006858 Msa0083030:intron 45.0%
!!! GTTTTTGGGGTCATAGAGGT+GGG + chr1_2:62006843-62006862 Msa0083030:intron 45.0%
!!! TTTTTGGGGTCATAGAGGTG+GGG + chr1_2:62006844-62006863 Msa0083030:intron 45.0%
ACGACTGAAAAGAAGTGGCT+TGG + chr1_2:62006901-62006920 Msa0083030:intron 45.0%
CGACTGAAAAGAAGTGGCTT+GGG + chr1_2:62006902-62006921 Msa0083030:intron 45.0%
AAAACAGGTTCATGGGACCA+AGG - chr1_2:62006979-62006998 None:intergenic 45.0%
! CTTTCGCCTTATAATGGGGA+TGG - chr1_2:62007040-62007059 None:intergenic 45.0%
!! AGTTTGTTGGGCTTCAACTG+CGG + chr1_2:62007207-62007226 Msa0083030:intron 45.0%
GACACAATTGACCGTAATCC+GGG + chr1_2:62007443-62007462 Msa0083030:intron 45.0%
TGCAGGATTGACAAACACAG+GGG + chr1_2:62007604-62007623 Msa0083030:intron 45.0%
!! TAGTACATGATGGGTCTGGA+AGG + chr1_2:62007898-62007917 Msa0083030:CDS 45.0%
GTCCTGAACAATTGGATTCG+CGG - chr1_2:62007962-62007981 None:intergenic 45.0%
GCGAATCCAATTGTTCAGGA+CGG + chr1_2:62007961-62007980 Msa0083030:CDS 45.0%
CGAATCCAATTGTTCAGGAC+GGG + chr1_2:62007962-62007981 Msa0083030:CDS 45.0%
GAATCCAATTGTTCAGGACG+GGG + chr1_2:62007963-62007982 Msa0083030:CDS 45.0%
CAAAAGATGACAGCGATCAG+CGG - chr1_2:62008000-62008019 None:intergenic 45.0%
ATAGGCCAAGGACCATTTAC+AGG - chr1_2:62008035-62008054 None:intergenic 45.0%
! GTGTCTCAGTTTTCAGCTGA+TGG + chr1_2:62008080-62008099 Msa0083030:CDS 45.0%
! ACTTTTTGTTGCTGGGTTCC+AGG + chr1_2:62008106-62008125 Msa0083030:CDS 45.0%
AATATGCAGGAGATCCACGA+TGG + chr1_2:62008674-62008693 Msa0083030:intron 45.0%
ATATGCAGGAGATCCACGAT+GGG + chr1_2:62008675-62008694 Msa0083030:intron 45.0%
! GACGATGGAGGATACTCTTT+TGG + chr1_2:62008716-62008735 Msa0083030:CDS 45.0%
!! GCTTCGAATTTTAGCGCACA+CGG + chr1_2:62008838-62008857 Msa0083030:CDS 45.0%
!! GTTTTGATGGGACACCTTGA+GGG + chr1_2:62009636-62009655 Msa0083030:CDS 45.0%
TGAAATAGCGTCCATCTCCA+CGG - chr1_2:62009680-62009699 None:intergenic 45.0%
ACCCATCAGTCACAGACTTA+TGG - chr1_2:62010030-62010049 None:intergenic 45.0%
! AAGTCTGTGACTGATGGGTA+TGG + chr1_2:62010031-62010050 Msa0083030:intron 45.0%
TTTGTGTCAGCTTGTCTGTC+TGG + chr1_2:62010288-62010307 Msa0083030:intron 45.0%
GTAACCGTGTTCGTGGATAT+AGG + chr1_2:62010427-62010446 Msa0083030:intron 45.0%
TGAATGGGATTACAGGTGGA+TGG + chr1_2:62010455-62010474 Msa0083030:CDS 45.0%
! TCAAGTCTTTTGCTTGTGGC+GGG - chr1_2:62010485-62010504 None:intergenic 45.0%
TCATCCTTGTGATCAGTCAG+TGG + chr1_2:62010506-62010525 Msa0083030:CDS 45.0%
! CAAGAGTGCGTAAGACTGAA+TGG - chr1_2:62010545-62010564 None:intergenic 45.0%
AAGCTGGAGAGAAAAAGCAG+CGG - chr1_2:62010569-62010588 None:intergenic 45.0%
AGGCCAGGAATCAAAGTTCA+AGG - chr1_2:62011219-62011238 None:intergenic 45.0%
CAAGAAGAGCTAACGAGCAT+AGG - chr1_2:62011479-62011498 None:intergenic 45.0%
! CTATGCTCGTTAGCTCTTCT+TGG + chr1_2:62011477-62011496 Msa0083030:CDS 45.0%
!!! TAATTTATTTATCATTTTTA+TGG + chr1_2:62009078-62009097 Msa0083030:intron 5.0%
!!! GGTTTTTGGGGTCATAGAGG+TGG + chr1_2:62006842-62006861 Msa0083030:intron 50.0%
GGAGCTTCGTAGAACAAGTG+TGG - chr1_2:62007065-62007084 None:intergenic 50.0%
! GTAGGTCGCTCGAGTTTGTT+GGG + chr1_2:62007195-62007214 Msa0083030:intron 50.0%
! GTTTGTTGGGCTTCAACTGC+GGG + chr1_2:62007208-62007227 Msa0083030:intron 50.0%
!! CTGCTAGTACATGATGGGTC+TGG + chr1_2:62007894-62007913 Msa0083030:CDS 50.0%
GAAAGAGTTGCCTGTTTCCC+CGG + chr1_2:62007920-62007939 Msa0083030:CDS 50.0%
CGACTAGGCATTTGGTCGAT+AGG - chr1_2:62008053-62008072 None:intergenic 50.0%
CGTATGCTCGACTAGGCATT+TGG - chr1_2:62008061-62008080 None:intergenic 50.0%
TGAGACACGTATGCTCGACT+AGG - chr1_2:62008068-62008087 None:intergenic 50.0%
GTGTACGATAGGTGACATGC+TGG - chr1_2:62008429-62008448 None:intergenic 50.0%
GATGGGAGGGAATTAGTTGC+AGG + chr1_2:62008764-62008783 Msa0083030:CDS 50.0%
GTTCTTTCCCTCTGGACTTC+AGG + chr1_2:62009534-62009553 Msa0083030:intron 50.0%
! TTCCCTCTGGACTTCAGGTT+AGG + chr1_2:62009539-62009558 Msa0083030:intron 50.0%
! TCCCTCTGGACTTCAGGTTA+GGG + chr1_2:62009540-62009559 Msa0083030:intron 50.0%
TCCCTAACCTGAAGTCCAGA+GGG - chr1_2:62009544-62009563 None:intergenic 50.0%
AATGCTAAAGACAAGCCGGC+AGG + chr1_2:62009612-62009631 Msa0083030:CDS 50.0%
ATGCTAAAGACAAGCCGGCA+GGG + chr1_2:62009613-62009632 Msa0083030:CDS 50.0%
!! GGTTTTGATGGGACACCTTG+AGG + chr1_2:62009635-62009654 Msa0083030:CDS 50.0%
GAAATAGCGTCCATCTCCAC+GGG - chr1_2:62009679-62009698 None:intergenic 50.0%
! TGCTAGAGCACTTCTGCTGA+TGG + chr1_2:62009851-62009870 Msa0083030:intron 50.0%
! GCTAGAGCACTTCTGCTGAT+GGG + chr1_2:62009852-62009871 Msa0083030:intron 50.0%
! GTAGCCACTGACTGATCACA+AGG - chr1_2:62010513-62010532 None:intergenic 50.0%
CAGTCAGTGGCTACGTATAG+AGG + chr1_2:62010519-62010538 Msa0083030:CDS 50.0%
TATAACTAGGGGGAAGAGGG+AGG + chr1_2:62010896-62010915 Msa0083030:intron 50.0%
CTAACGAGCATAGGGTGGAA+AGG - chr1_2:62011470-62011489 None:intergenic 50.0%
AAGAGCTAACGAGCATAGGG+TGG - chr1_2:62011475-62011494 None:intergenic 50.0%
! CTCGTTAGCTCTTCTTGGGA+TGG + chr1_2:62011482-62011501 Msa0083030:CDS 50.0%
! ATCTGCTGGGAGCTCTGATA+TGG + chr1_2:62011523-62011542 Msa0083030:CDS 50.0%
! AGCCTCGTCGGTTAAGAAGA+GGG + chr1_2:62011547-62011566 Msa0083030:CDS 50.0%
TACCCTCTTCTTAACCGACG+AGG - chr1_2:62011552-62011571 None:intergenic 50.0%
GGTAGGTCGCTCGAGTTTGT+TGG + chr1_2:62007194-62007213 Msa0083030:intron 55.0%
AGCATCTTCACCGGGGAAAC+AGG - chr1_2:62007933-62007952 None:intergenic 55.0%
TGTTTCCCCGGTGAAGATGC+TGG + chr1_2:62007932-62007951 Msa0083030:CDS 55.0%
GGCCGCGAATCCAATTGTTC+AGG + chr1_2:62007957-62007976 Msa0083030:CDS 55.0%
CCTTCCCCGTCCTGAACAAT+TGG - chr1_2:62007970-62007989 None:intergenic 55.0%
CCAATTGTTCAGGACGGGGA+AGG + chr1_2:62007967-62007986 Msa0083030:CDS 55.0%
GGCATTTGGTCGATAGGCCA+AGG - chr1_2:62008047-62008066 None:intergenic 55.0%
! ATGGTGCAGTTTGAAGCGGG+TGG + chr1_2:62008934-62008953 Msa0083030:intron 55.0%
GTCCCTAACCTGAAGTCCAG+AGG - chr1_2:62009545-62009564 None:intergenic 55.0%
TGCTAAAGACAAGCCGGCAG+GGG + chr1_2:62009614-62009633 Msa0083030:CDS 55.0%
!! AAGCCGGCAGGGGTTTTGAT+GGG + chr1_2:62009624-62009643 Msa0083030:CDS 55.0%
TGTCCCATCAAAACCCCTGC+CGG - chr1_2:62009630-62009649 None:intergenic 55.0%
TTCGGTTATGAACAGCGGCG+AGG - chr1_2:62011239-62011258 None:intergenic 55.0%
CTCTGATATGGCAGCCTCGT+CGG + chr1_2:62011535-62011554 Msa0083030:CDS 55.0%
! CAGCCTCGTCGGTTAAGAAG+AGG + chr1_2:62011546-62011565 Msa0083030:CDS 55.0%
GCAGGAGATCCACGATGGGT+TGG + chr1_2:62008679-62008698 Msa0083030:intron 60.0%
!! CAAGCCGGCAGGGGTTTTGA+TGG + chr1_2:62009623-62009642 Msa0083030:CDS 60.0%
CTAGGGGGAAGAGGGAGGAT+AGG + chr1_2:62010901-62010920 Msa0083030:intron 60.0%
TTATGAACAGCGGCGAGGCC+AGG - chr1_2:62011234-62011253 None:intergenic 60.0%
TCCCCGGTGAAGATGCTGGC+AGG + chr1_2:62007936-62007955 Msa0083030:CDS 65.0%
GCCTGCCAGCATCTTCACCG+GGG - chr1_2:62007940-62007959 None:intergenic 65.0%
GGCCTGCCAGCATCTTCACC+GGG - chr1_2:62007941-62007960 None:intergenic 65.0%
CGGCCTGCCAGCATCTTCAC+CGG - chr1_2:62007942-62007961 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62006392 62011763 62006392 ID=Msa0083030;Name=Msa0083030
chr1_2 mRNA 62006392 62011763 62006392 ID=Msa0083030-mRNA-1;Parent=Msa0083030;Name=Msa0083030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=277|1|1|1|0.88|0.8|10|159|495
chr1_2 exon 62006392 62006578 62006392 ID=Msa0083030-mRNA-1:exon:20565;Parent=Msa0083030-mRNA-1
chr1_2 exon 62007609 62008127 62007609 ID=Msa0083030-mRNA-1:exon:20566;Parent=Msa0083030-mRNA-1
chr1_2 exon 62008197 62008316 62008197 ID=Msa0083030-mRNA-1:exon:20567;Parent=Msa0083030-mRNA-1
chr1_2 exon 62008419 62008496 62008419 ID=Msa0083030-mRNA-1:exon:20568;Parent=Msa0083030-mRNA-1
chr1_2 exon 62008683 62008859 62008683 ID=Msa0083030-mRNA-1:exon:20569;Parent=Msa0083030-mRNA-1
chr1_2 exon 62009196 62009273 62009196 ID=Msa0083030-mRNA-1:exon:20570;Parent=Msa0083030-mRNA-1
chr1_2 exon 62009591 62009766 62009591 ID=Msa0083030-mRNA-1:exon:20571;Parent=Msa0083030-mRNA-1
chr1_2 exon 62010428 62010592 62010428 ID=Msa0083030-mRNA-1:exon:20572;Parent=Msa0083030-mRNA-1
chr1_2 exon 62010762 62010822 62010762 ID=Msa0083030-mRNA-1:exon:20573;Parent=Msa0083030-mRNA-1
chr1_2 exon 62011401 62011763 62011401 ID=Msa0083030-mRNA-1:exon:20574;Parent=Msa0083030-mRNA-1
chr1_2 five_prime_UTR 62006392 62006578 62006392 ID=Msa0083030-mRNA-1:five_prime_utr;Parent=Msa0083030-mRNA-1
chr1_2 five_prime_UTR 62007609 62007698 62007609 ID=Msa0083030-mRNA-1:five_prime_utr;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62007699 62008127 62007699 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62008197 62008316 62008197 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62008419 62008496 62008419 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62008683 62008859 62008683 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62009196 62009273 62009196 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62009591 62009766 62009591 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62010428 62010592 62010428 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62010762 62010822 62010762 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 CDS 62011401 62011604 62011401 ID=Msa0083030-mRNA-1:cds;Parent=Msa0083030-mRNA-1
chr1_2 three_prime_UTR 62011605 62011763 62011605 ID=Msa0083030-mRNA-1:three_prime_utr;Parent=Msa0083030-mRNA-1
Gene Sequence

>Msa0083030

ATGTACGCTATATCTGGTGCACTTTACGTTGACCAAATGGGTTATGCTATGAGTAGATTAGACGTGGACTCTAGTGATACTGAAGATGGAAATGCAATCCTTGAAGATTCTAGCACTGGAAAATCTAAAAAGGCATTTGAAAATTTAGACAATGAAATTGCTCAGATAACCAAGTTGAAATCAACACCTCATCAACTGCTAGTACATGATGGGTCTGGAAGGAAAGAGTTGCCTGTTTCCCCGGTGAAGATGCTGGCAGGCCGCGAATCCAATTGTTCAGGACGGGGAAGGTTTTCTTCCGCTGATCGCTGTCATCTTTTGAGCAGATATTTACCTGTAAATGGTCCTTGGCCTATCGACCAAATGCCTAGTCGAGCATACGTGTCTCAGTTTTCAGCTGATGGTTCACTTTTTGTTGCTGGGTTCCAGGGAAACCACATAAAAATATACAATGTGGACAAAGGTTGGAAAGTTCAAAAAAACATTCTAACTAAGAGTTTGAGATGGACAATCACTGATACTTCTCTTTCCCCTGATCAAAGCCATCTAGTTTATGCCAGCATGTCACCTATCGTACACATTGTAAATGTTGGATCTTCTGAGACAGAGTCACTAGCAAATGTGACGGAGATCCACGATGGGTTGGATTTTTCATCAAATGACGATGGAGGATACTCTTTTGGAATTTTCTCTGTGAAATTTTCAACAGATGGGAGGGAATTAGTTGCAGGAACTAGTGGCGATTCTATATATGTATATGATCTTGAAACAAATAAGGTTTCGCTTCGAATTTTAGCGCACACGGCTGATGTAAACACCGTATGTTTTGCTGATGAAACTGGCCATCTTATTTACTCTGGAAGTGATGATAGTTTCTGCAAGGTCTGGGATCGTCGTTGCTTAAATGCTAAAGACAAGCCGGCAGGGGTTTTGATGGGACACCTTGAGGGCATTACATTTATTGATACCCGTGGAGATGGACGCTATTTCATTTCAAACGGTAAAGATCAGACCATCAAACTTTGGGACATACGTAAAATGTCATCCAATGTTACCAGTAACCGTGTTCGTGGATATAGGAGTTTTGAATGGGATTACAGGTGGATGGATTACCCGCCACAAGCAAAAGACTTGAATCATCCTTGTGATCAGTCAGTGGCTACGTATAGAGGCCATTCAGTCTTACGCACTCTTGTCCGCTGCTTTTTCTCTCCAGCTTTTAGCACTGGCCAGAAGTATATCTATACTGGATCACACAATGCATGTGTTTATGTATATGATTTGGTGAGTGGAGCACAAGTTGCAACATTGAAGCACCATAAATCACCTGTAAGAGATTGTAGTTGGCATCCTTTCCACCCTATGCTCGTTAGCTCTTCTTGGGATGGAGATGTTGTAAAATGGCAATCTGCTGGGAGCTCTGATATGGCAGCCTCGTCGGTTAAGAAGAGGGTATACAAAAGACATTTTTATGAAGATTACCTATGA

Protein sequence

>Msa0083030

MYAISGALYVDQMGYAMSRLDVDSSDTEDGNAILEDSSTGKSKKAFENLDNEIAQITKLKSTPHQLLVHDGSGRKELPVSPVKMLAGRESNCSGRGRFSSADRCHLLSRYLPVNGPWPIDQMPSRAYVSQFSADGSLFVAGFQGNHIKIYNVDKGWKVQKNILTKSLRWTITDTSLSPDQSHLVYASMSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSVKFSTDGRELVAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKVWDRRCLNAKDKPAGVLMGHLEGITFIDTRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNRVRGYRSFEWDYRWMDYPPQAKDLNHPCDQSVATYRGHSVLRTLVRCFFSPAFSTGQKYIYTGSHNACVYVYDLVSGAQVATLKHHKSPVRDCSWHPFHPMLVSSSWDGDVVKWQSAGSSDMAASSVKKRVYKRHFYEDYL*