Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416350 | sp|O24467|LE14B_PRUAR | 70.435 | 460 | 131 | 3 | 18 | 476 | 5 | 460 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416350 | G7I2T4 | 98.586 | 495 | 7 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1018 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034490 | Msa1416350 | 0.881745 | 1.859854e-70 | -8.615850e-47 |
| Msa0083030 | Msa1416350 | 0.963293 | 6.581303e-122 | -8.615850e-47 |
| Msa1345380 | Msa1416350 | 0.801544 | 8.566306e-49 | -8.615850e-47 |
| Msa0626820 | Msa1416350 | 0.808029 | 3.786258e-50 | -8.615850e-47 |
| Msa0129460 | Msa1416350 | 0.941027 | 8.476366e-101 | -8.615850e-47 |
| Msa0554740 | Msa1416350 | 0.801283 | 9.687212e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416350 | MtrunA17_Chr1g0196321 | 98.586 | 495 | 7 | 0 | 1 | 495 | 1 | 495 | 0.0 | 1018 |
| Msa1416350 | MtrunA17_Chr2g0286731 | 69.954 | 436 | 127 | 2 | 49 | 484 | 32 | 463 | 0.0 | 645 |
| Msa1416350 | MtrunA17_Chr7g0253861 | 23.297 | 279 | 143 | 7 | 224 | 465 | 96 | 340 | 1.67e-16 | 80.9 |
| Msa1416350 | MtrunA17_Chr4g0067151 | 26.800 | 250 | 164 | 6 | 224 | 464 | 76 | 315 | 1.02e-15 | 78.2 |
| Msa1416350 | MtrunA17_Chr1g0185501 | 25.311 | 241 | 137 | 5 | 224 | 464 | 109 | 306 | 2.29e-15 | 77.0 |
| Msa1416350 | MtrunA17_Chr3g0093681 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 2.74e-13 | 72.0 |
| Msa1416350 | MtrunA17_Chr6g0448921 | 30.667 | 150 | 93 | 3 | 224 | 373 | 57 | 195 | 9.02e-13 | 70.9 |
| Msa1416350 | MtrunA17_Chr1g0172501 | 30.714 | 140 | 91 | 2 | 203 | 342 | 419 | 552 | 9.06e-13 | 70.5 |
| Msa1416350 | MtrunA17_Chr5g0405851 | 31.933 | 119 | 77 | 1 | 224 | 342 | 335 | 449 | 3.88e-11 | 65.1 |
| Msa1416350 | MtrunA17_Chr8g0352821 | 23.554 | 242 | 135 | 7 | 229 | 468 | 228 | 421 | 5.86e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416350 | AT4G03020.1 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| Msa1416350 | AT4G03020.2 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| Msa1416350 | AT4G03020.3 | 71.753 | 485 | 132 | 3 | 10 | 491 | 10 | 492 | 0.0 | 724 |
| Msa1416350 | AT2G43770.1 | 23.843 | 281 | 139 | 6 | 224 | 465 | 94 | 338 | 4.46e-18 | 85.9 |
| Msa1416350 | AT3G49660.1 | 24.542 | 273 | 181 | 7 | 208 | 468 | 53 | 312 | 4.10e-15 | 76.6 |
| Msa1416350 | AT4G02730.1 | 26.141 | 241 | 125 | 7 | 224 | 459 | 126 | 318 | 7.67e-12 | 67.0 |
| Msa1416350 | AT1G11160.2 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.40e-11 | 67.8 |
| Msa1416350 | AT1G11160.1 | 24.696 | 247 | 138 | 7 | 224 | 469 | 56 | 255 | 1.41e-11 | 67.8 |
| Msa1416350 | AT1G11160.3 | 24.696 | 247 | 138 | 6 | 224 | 469 | 14 | 213 | 1.50e-11 | 67.4 |
| Msa1416350 | AT1G11160.4 | 24.696 | 247 | 138 | 6 | 224 | 469 | 56 | 255 | 1.56e-11 | 67.4 |
| Msa1416350 | AT5G08390.1 | 29.333 | 150 | 95 | 3 | 224 | 373 | 57 | 195 | 2.24e-11 | 67.0 |
| Msa1416350 | AT1G61210.3 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 5.25e-11 | 65.9 |
| Msa1416350 | AT1G61210.1 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 8.10e-11 | 65.5 |
| Msa1416350 | AT1G61210.2 | 23.394 | 218 | 135 | 5 | 265 | 468 | 12 | 211 | 8.17e-11 | 65.5 |
| Msa1416350 | AT5G23430.1 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.29e-11 | 65.1 |
| Msa1416350 | AT5G23430.3 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.37e-11 | 65.1 |
| Msa1416350 | AT5G23430.2 | 28.105 | 153 | 93 | 4 | 224 | 373 | 57 | 195 | 9.37e-11 | 65.1 |
Find 120 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTCTGCTTTGGGTAAT+TGG | 0.178793 | tig0024340:-60750 | None:intergenic |
| AATCTCTTACAGGTGATTTA+TGG | 0.181919 | tig0024340:-65740 | None:intergenic |
| ATGTGCAAATTGTTACAAAA+AGG | 0.220757 | tig0024340:-60788 | None:intergenic |
| CTATGCTCGTTAGCTCTTCT+TGG | 0.255220 | tig0024340:+65784 | Msa1416350:CDS |
| AGCAGATATTTACCTGTAAA+TGG | 0.272385 | tig0024340:+62327 | Msa1416350:CDS |
| ATATGATCTTGAAACAAATA+AGG | 0.306324 | tig0024340:+63118 | Msa1416350:CDS |
| TAGCACTGGAAAATCTAAAA+AGG | 0.311940 | tig0024340:+62116 | Msa1416350:CDS |
| ATATGGTGTTTGACATAATA+AGG | 0.315445 | tig0024340:+65981 | Msa1416350:three_prime_UTR |
| GACGATGGAGGATACTCTTT+TGG | 0.318718 | tig0024340:+63023 | Msa1416350:CDS |
| TTCATGGAATCTTCTGCTTT+GGG | 0.326986 | tig0024340:-60757 | None:intergenic |
| GTTCATGGAATCTTCTGCTT+TGG | 0.330166 | tig0024340:-60758 | None:intergenic |
| CCTTCCCCGTCCTGAACAAT+TGG | 0.339582 | tig0024340:-62274 | None:intergenic |
| GTTGATATTGAAGTTGTATA+TGG | 0.348324 | tig0024340:+65964 | Msa1416350:three_prime_UTR |
| TTTAAATAGCTCAGATGCTT+TGG | 0.350837 | tig0024340:+61948 | Msa1416350:five_prime_UTR |
| AGCATCTTCACCGGGGAAAC+AGG | 0.359807 | tig0024340:-62237 | None:intergenic |
| ACGTATGTCCCAAAGTTTGA+TGG | 0.361310 | tig0024340:-64028 | None:intergenic |
| TGCACTTTACGTTGACCAAA+TGG | 0.380038 | tig0024340:+62023 | Msa1416350:CDS |
| TGCCAACTACAATCTCTTAC+AGG | 0.382540 | tig0024340:-65750 | None:intergenic |
| TTCCAGTGCTAGAATCTTCA+AGG | 0.382938 | tig0024340:-62104 | None:intergenic |
| ATAGTTATGTACGCTATATC+TGG | 0.384746 | tig0024340:+62000 | Msa1416350:exon |
| ACTGATTTAACTGACATCAT+AGG | 0.385029 | tig0024340:-65905 | None:intergenic |
| CTTACTAGATGGCTTTGATC+AGG | 0.388290 | tig0024340:-62606 | None:intergenic |
| GGCCAGAAGTATATCTATAC+TGG | 0.393179 | tig0024340:+65073 | Msa1416350:CDS |
| ATCCAGTATAGATATACTTC+TGG | 0.402582 | tig0024340:-65075 | None:intergenic |
| TGATACAGACCATACCTCTT+AGG | 0.407084 | tig0024340:-60860 | None:intergenic |
| ATAGGCCAAGGACCATTTAC+AGG | 0.415805 | tig0024340:-62339 | None:intergenic |
| GGCCGCGAATCCAATTGTTC+AGG | 0.416503 | tig0024340:+62264 | Msa1416350:CDS |
| CGTATGCTCGACTAGGCATT+TGG | 0.426545 | tig0024340:-62365 | None:intergenic |
| TACTCATAGCATAACCCATT+TGG | 0.431168 | tig0024340:-62038 | None:intergenic |
| AGATCAGACCATCAAACTTT+GGG | 0.433353 | tig0024340:+64020 | Msa1416350:CDS |
| GGGATGGAGATGTTGTAAAA+TGG | 0.435817 | tig0024340:+65805 | Msa1416350:CDS |
| AAGATCAGACCATCAAACTT+TGG | 0.439366 | tig0024340:+64019 | Msa1416350:CDS |
| TATGCTCGTTAGCTCTTCTT+GGG | 0.443104 | tig0024340:+65785 | Msa1416350:CDS |
| GATGGGAGGGAATTAGTTGC+AGG | 0.457956 | tig0024340:+63071 | Msa1416350:CDS |
| AATTTCAGTAACCGTGTTCG+TGG | 0.462360 | tig0024340:+64727 | Msa1416350:intron |
| ATGTGTTTATGTATATGATT+TGG | 0.470295 | tig0024340:+65108 | Msa1416350:CDS |
| ATCGTACACATTGTAAATGT+TGG | 0.472091 | tig0024340:+62747 | Msa1416350:CDS |
| ATTTACCTGTAAATGGTCCT+TGG | 0.479935 | tig0024340:+62334 | Msa1416350:CDS |
| CGGCCTGCCAGCATCTTCAC+CGG | 0.481898 | tig0024340:-62246 | None:intergenic |
| CAGTCAGTGGCTACGTATAG+AGG | 0.482615 | tig0024340:+64826 | Msa1416350:CDS |
| GCACTTTACGTTGACCAAAT+GGG | 0.482739 | tig0024340:+62024 | Msa1416350:CDS |
| CGAATCCAATTGTTCAGGAC+GGG | 0.482995 | tig0024340:+62269 | Msa1416350:CDS |
| ATCCTTGAAGATTCTAGCAC+TGG | 0.486362 | tig0024340:+62102 | Msa1416350:CDS |
| TCCCCGGTGAAGATGCTGGC+AGG | 0.486810 | tig0024340:+62243 | Msa1416350:CDS |
| CTCGTTAGCTCTTCTTGGGA+TGG | 0.489305 | tig0024340:+65789 | Msa1416350:CDS |
| TGAATGGGATTACAGGTGGA+TGG | 0.490487 | tig0024340:+64762 | Msa1416350:CDS |
| GTCCTGAACAATTGGATTCG+CGG | 0.491213 | tig0024340:-62266 | None:intergenic |
| ATTATTTATGTACAAGATTG+TGG | 0.493007 | tig0024340:-66018 | None:intergenic |
| ACTGGCCATCTTATTTACTC+TGG | 0.494750 | tig0024340:+63536 | Msa1416350:CDS |
| CTCTGATGTGGCAGCCTCGT+CGG | 0.495084 | tig0024340:+65842 | Msa1416350:CDS |
| GAAAGAGTTGCCTGTTTCCC+CGG | 0.495375 | tig0024340:+62227 | Msa1416350:CDS |
| TATACAATGTGGACAAAGGT+TGG | 0.499477 | tig0024340:+62520 | Msa1416350:CDS |
| CTGCTAGTACATGATGGGTC+TGG | 0.500073 | tig0024340:+62201 | Msa1416350:CDS |
| TTACTAGATGGCTTTGATCA+GGG | 0.501289 | tig0024340:-62605 | None:intergenic |
| GGACGCTATTTCATTTCAAA+CGG | 0.501559 | tig0024340:+63994 | Msa1416350:CDS |
| CATCAACTGCTAGTACATGA+TGG | 0.505267 | tig0024340:+62195 | Msa1416350:CDS |
| CAAGAAGAGCTAACGAGCAT+AGG | 0.505730 | tig0024340:-65783 | None:intergenic |
| CACCTGTAAGAGATTGTAGT+TGG | 0.509483 | tig0024340:+65748 | Msa1416350:CDS |
| TGTCCCATCAAAACCCCTGC+CGG | 0.512728 | tig0024340:-63934 | None:intergenic |
| GTAACCGTGTTCGTGGATAT+AGG | 0.517492 | tig0024340:+64734 | Msa1416350:intron |
| CCAATTGTTCAGGACGGGGA+AGG | 0.517976 | tig0024340:+62274 | Msa1416350:CDS |
| TGTTTCCCCGGTGAAGATGC+TGG | 0.519063 | tig0024340:+62239 | Msa1416350:CDS |
| AATGCTAAAGACAAGCCGGC+AGG | 0.520946 | tig0024340:+63919 | Msa1416350:CDS |
| TTTATTGATACCCGTGGAGA+TGG | 0.521044 | tig0024340:+63973 | Msa1416350:CDS |
| TTTAGTGGTCACCTAAAAGC+TGG | 0.522377 | tig0024340:-64889 | None:intergenic |
| CAATAAATGTAATGCCCTCA+AGG | 0.532155 | tig0024340:-63957 | None:intergenic |
| AAGAGCATACCTGGTAACAT+TGG | 0.534358 | tig0024340:-64061 | None:intergenic |
| GTTGTAAAATGGCAATCTGC+TGG | 0.535124 | tig0024340:+65816 | Msa1416350:CDS |
| TGCTAAAGACAAGCCGGCAG+GGG | 0.535291 | tig0024340:+63921 | Msa1416350:CDS |
| GACTCTAGTGATACTGAAGA+TGG | 0.540581 | tig0024340:+62072 | Msa1416350:CDS |
| CAAGAGTGCGTAAGACTGAA+TGG | 0.543044 | tig0024340:-64849 | None:intergenic |
| GATGATTCATTACAGGTGAG+TGG | 0.544157 | tig0024340:+65693 | Msa1416350:intron |
| CGACTAGGCATTTGGTCGAT+AGG | 0.547791 | tig0024340:-62357 | None:intergenic |
| TACTAGATGGCTTTGATCAG+GGG | 0.548826 | tig0024340:-62604 | None:intergenic |
| GCAGGAGATCCACGATGGGT+TGG | 0.550911 | tig0024340:+62986 | Msa1416350:intron |
| ATCTGCTGGGAGCTCTGATG+TGG | 0.552704 | tig0024340:+65830 | Msa1416350:CDS |
| GGCCTGCCAGCATCTTCACC+GGG | 0.553632 | tig0024340:-62245 | None:intergenic |
| AAGAAGAGCTAACGAGCATA+GGG | 0.554781 | tig0024340:-65782 | None:intergenic |
| ATGCTAAAGACAAGCCGGCA+GGG | 0.560101 | tig0024340:+63920 | Msa1416350:CDS |
| CACTTCCAGAGTAAATAAGA+TGG | 0.565103 | tig0024340:-63541 | None:intergenic |
| TTTGCAGGATTGACAAACAC+AGG | 0.573696 | tig0024340:+61909 | Msa1416350:intron |
| CTTAAATGCTAAAGACAAGC+CGG | 0.577168 | tig0024340:+63915 | Msa1416350:CDS |
| ACATTTACAATGTGTACGAT+AGG | 0.581114 | tig0024340:-62744 | None:intergenic |
| ATCAACTGCTAGTACATGAT+GGG | 0.581257 | tig0024340:+62196 | Msa1416350:CDS |
| TTGTAAAATGGCAATCTGCT+GGG | 0.586915 | tig0024340:+65817 | Msa1416350:CDS |
| ACAGACCATACCTCTTAGGA+TGG | 0.590479 | tig0024340:-60856 | None:intergenic |
| GAAATAGCGTCCATCTCCAC+GGG | 0.592069 | tig0024340:-63983 | None:intergenic |
| TGAAATAGCGTCCATCTCCA+CGG | 0.592795 | tig0024340:-63984 | None:intergenic |
| ATGAGGTGTTGATTTCAACT+TGG | 0.593854 | tig0024340:-62175 | None:intergenic |
| AAATGTCATCCAATGTTACC+AGG | 0.595793 | tig0024340:+64052 | Msa1416350:CDS |
| AAAATATACAATGTGGACAA+AGG | 0.599948 | tig0024340:+62516 | Msa1416350:CDS |
| AGCCTCGTCGGTTAAGAAGA+GGG | 0.600390 | tig0024340:+65854 | Msa1416350:CDS |
| CAGCCTCGTCGGTTAAGAAG+AGG | 0.601348 | tig0024340:+65853 | Msa1416350:CDS |
| GAATTAGTTGCAGGAACTAG+TGG | 0.606878 | tig0024340:+63080 | Msa1416350:CDS |
| TTCTAACTAAGAGTTTGAGA+TGG | 0.609877 | tig0024340:+62559 | Msa1416350:CDS |
| CTAACGAGCATAGGGTGGAA+AGG | 0.614104 | tig0024340:-65774 | None:intergenic |
| TAGTACATGATGGGTCTGGA+AGG | 0.615748 | tig0024340:+62205 | Msa1416350:CDS |
| GCGAATCCAATTGTTCAGGA+CGG | 0.617169 | tig0024340:+62268 | Msa1416350:CDS |
| TTGCAGGATTGACAAACACA+GGG | 0.622055 | tig0024340:+61910 | Msa1416350:intron |
| TGAGACACGTATGCTCGACT+AGG | 0.624491 | tig0024340:-62372 | None:intergenic |
| AACTCCTATATCCACGAACA+CGG | 0.626589 | tig0024340:-64738 | None:intergenic |
| GGCATTTGGTCGATAGGCCA+AGG | 0.629750 | tig0024340:-62351 | None:intergenic |
| GAATCCAATTGTTCAGGACG+GGG | 0.630776 | tig0024340:+62270 | Msa1416350:CDS |
| AGTTTCATCAGCAAAACATA+CGG | 0.631088 | tig0024340:-63516 | None:intergenic |
| GTGTACGATAGGTGACATGC+TGG | 0.632627 | tig0024340:-62733 | None:intergenic |
| TGCTATGAGTAGATTAGACG+TGG | 0.632706 | tig0024340:+62050 | Msa1416350:CDS |
| AAGAGCTAACGAGCATAGGG+TGG | 0.635204 | tig0024340:-65779 | None:intergenic |
| TCATGTACTAGCAGTTGATG+AGG | 0.637096 | tig0024340:-62192 | None:intergenic |
| ATTACATTTATTGATACCCG+TGG | 0.637357 | tig0024340:+63967 | Msa1416350:CDS |
| CAAAAGATGACAGCGATCAG+CGG | 0.644029 | tig0024340:-62304 | None:intergenic |
| AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | tig0024340:+63559 | Msa1416350:CDS |
| AATATGCAGGAGATCCACGA+TGG | 0.665955 | tig0024340:+62981 | Msa1416350:intron |
| TCATCCTTGTGATCAGTCAG+TGG | 0.674274 | tig0024340:+64813 | Msa1416350:CDS |
| GTAGCCACTGACTGATCACA+AGG | 0.680555 | tig0024340:-64817 | None:intergenic |
| CATAACTATTCAAATCAACA+CGG | 0.685486 | tig0024340:-61986 | None:intergenic |
| ATATGCAGGAGATCCACGAT+GGG | 0.686383 | tig0024340:+62982 | Msa1416350:intron |
| AGAGTCACTAGCAAATGTGA+CGG | 0.704087 | tig0024340:+62782 | Msa1416350:CDS |
| TACCCTCTTCTTAACCGACG+AGG | 0.713771 | tig0024340:-65856 | None:intergenic |
| GCCTGCCAGCATCTTCACCG+GGG | 0.715871 | tig0024340:-62244 | None:intergenic |
| TGCAGGATTGACAAACACAG+GGG | 0.738451 | tig0024340:+61911 | Msa1416350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAATTAATTTATTTTTC+AGG | + | tig0024340:62482-62501 | Msa1416350:intron | 10.0% |
| !!! | CTAAATTAATTTATTTTTCA+GGG | + | tig0024340:62483-62502 | Msa1416350:intron | 10.0% |
| !! | AAGAAAAATAATTGATTAAA+AGG | - | tig0024340:62657-62676 | None:intergenic | 10.0% |
| !! | AAATAAATTATAAAACTTGA+GGG | - | tig0024340:65248-65267 | None:intergenic | 10.0% |
| !! | AAAATAAATTATAAAACTTG+AGG | - | tig0024340:65249-65268 | None:intergenic | 10.0% |
| !! | AATAATCACATAGATTAAAT+GGG | - | tig0024340:61015-61034 | None:intergenic | 15.0% |
| !! | TAATAATCACATAGATTAAA+TGG | - | tig0024340:61016-61035 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTCTTATCTATA+TGG | + | tig0024340:61840-61859 | Msa1416350:intron | 15.0% |
| !! | CTAAATAGATGTAATATTTA+TGG | - | tig0024340:63183-63202 | None:intergenic | 15.0% |
| !!! | AGATTTTATGTTTTTATCAT+CGG | + | tig0024340:65156-65175 | Msa1416350:intron | 15.0% |
| !! | AAATAGTATAATCTATAACT+AGG | + | tig0024340:65190-65209 | Msa1416350:intron | 15.0% |
| !! | AATAGTATAATCTATAACTA+GGG | + | tig0024340:65191-65210 | Msa1416350:intron | 15.0% |
| !! | AATAAATTATAAAACTTGAG+GGG | - | tig0024340:65247-65266 | None:intergenic | 15.0% |
| !! | TTGATAAATTATTCAATCAT+TGG | - | tig0024340:65301-65320 | None:intergenic | 15.0% |
| !!! | AAAAGATGAAATTTAAGATT+TGG | + | tig0024340:65355-65374 | Msa1416350:intron | 15.0% |
| !!! | TGTAATGTATTATTTTTAAG+CGG | + | tig0024340:65595-65614 | Msa1416350:intron | 15.0% |
| !!! | GAATTTGATTCTGTAAATTT+TGG | - | tig0024340:60946-60965 | None:intergenic | 20.0% |
| !!! | AAGTTAGTTAGTTTGTTATT+TGG | + | tig0024340:61587-61606 | Msa1416350:intron | 20.0% |
| !!! | AGTTAGTTAGTTTGTTATTT+GGG | + | tig0024340:61588-61607 | Msa1416350:intron | 20.0% |
| !! | ATATGATCTTGAAACAAATA+AGG | + | tig0024340:63118-63137 | Msa1416350:CDS | 20.0% |
| !! | TAAATTATAGATTCAGACAA+TGG | - | tig0024340:63222-63241 | None:intergenic | 20.0% |
| !! | TTGTCTGAATCTATAATTTA+TGG | + | tig0024340:63222-63241 | Msa1416350:intron | 20.0% |
| !! | TCTAATGTACAAAATTGTTT+AGG | + | tig0024340:63876-63895 | Msa1416350:intron | 20.0% |
| !! | TTCATATAATTCAACAGATA+TGG | - | tig0024340:64102-64121 | None:intergenic | 20.0% |
| !! | TAAATTAGACGACTTATATT+AGG | + | tig0024340:64306-64325 | Msa1416350:intron | 20.0% |
| !! | AATTATGTTGTAAAATTGTG+AGG | + | tig0024340:64421-64440 | Msa1416350:intron | 20.0% |
| !!! | AAACTCTGTATTTTTCATTT+TGG | - | tig0024340:64505-64524 | None:intergenic | 20.0% |
| !! | ACTGAAATTTAGAGAAAAAT+CGG | - | tig0024340:64716-64735 | None:intergenic | 20.0% |
| !! | CTTGAGCATATTAAAATTAT+TGG | + | tig0024340:64993-65012 | Msa1416350:intron | 20.0% |
| !! | ATGTGTTTATGTATATGATT+TGG | + | tig0024340:65108-65127 | Msa1416350:CDS | 20.0% |
| !! | ATAGTATAATCTATAACTAG+GGG | + | tig0024340:65192-65211 | Msa1416350:intron | 20.0% |
| !! | ATTATTTATGTACAAGATTG+TGG | - | tig0024340:66021-66040 | None:intergenic | 20.0% |
| ! | TGTGCAAATTGTTACAAAAA+GGG | - | tig0024340:60790-60809 | None:intergenic | 25.0% |
| ! | ATGTGCAAATTGTTACAAAA+AGG | - | tig0024340:60791-60810 | None:intergenic | 25.0% |
| !!! | AATTTTTGGTTTGTCTGATA+TGG | - | tig0024340:60836-60855 | None:intergenic | 25.0% |
| ! | ATGCACAAATACATATTAAG+AGG | - | tig0024340:61050-61069 | None:intergenic | 25.0% |
| !! | TTACAGAAAAGTACAAAAAC+AGG | - | tig0024340:61301-61320 | None:intergenic | 25.0% |
| ! | ATTCATAGTTTACTGATAAG+TGG | + | tig0024340:61479-61498 | Msa1416350:intron | 25.0% |
| ! | TTCATAGTTTACTGATAAGT+GGG | + | tig0024340:61480-61499 | Msa1416350:intron | 25.0% |
| !!! | GAATTGGTTAGTTTGTTATT+TGG | + | tig0024340:61632-61651 | Msa1416350:intron | 25.0% |
| !!! | TATCTTTTTACGTTTTAACC+AGG | + | tig0024340:61806-61825 | Msa1416350:intron | 25.0% |
| ! | AAATTGTTAAAACAACAACC+TGG | - | tig0024340:61827-61846 | None:intergenic | 25.0% |
| ! | AAAATGTATGACGAAACAAT+AGG | - | tig0024340:61887-61906 | None:intergenic | 25.0% |
| ! | CATAACTATTCAAATCAACA+CGG | - | tig0024340:61989-62008 | None:intergenic | 25.0% |
| ! | AAACTATAGATGCATACATA+GGG | - | tig0024340:62458-62477 | None:intergenic | 25.0% |
| ! | AAAACTATAGATGCATACAT+AGG | - | tig0024340:62459-62478 | None:intergenic | 25.0% |
| !!! | CCACATTGTATATTTTTATG+TGG | - | tig0024340:62512-62531 | None:intergenic | 25.0% |
| ! | CCACATAAAAATATACAATG+TGG | + | tig0024340:62509-62528 | Msa1416350:CDS | 25.0% |
| ! | AAAATATACAATGTGGACAA+AGG | + | tig0024340:62516-62535 | Msa1416350:CDS | 25.0% |
| !! | AACTGTCATAGTTTTTCTTA+TGG | + | tig0024340:62681-62700 | Msa1416350:intron | 25.0% |
| ! | TTTCAGTTCTTATAATATGC+AGG | + | tig0024340:62968-62987 | Msa1416350:intron | 25.0% |
| !! | CTATTTAGCTTCATATGATT+TGG | + | tig0024340:63195-63214 | Msa1416350:intron | 25.0% |
| !! | TGGAGAAATCATTTTCATAT+TGG | + | tig0024340:63405-63424 | Msa1416350:intron | 25.0% |
| !! | GGAGAAATCATTTTCATATT+GGG | + | tig0024340:63406-63425 | Msa1416350:intron | 25.0% |
| !! | AAATCATTTTCATATTGGGA+TGG | + | tig0024340:63410-63429 | Msa1416350:intron | 25.0% |
| !! | AAAGTATTTACACATACCAT+AGG | + | tig0024340:63447-63466 | Msa1416350:intron | 25.0% |
| !! | ACCATAGGTTTTCTAAATTT+TGG | + | tig0024340:63462-63481 | Msa1416350:intron | 25.0% |
| ! | ACCAAAATTTAGAAAACCTA+TGG | - | tig0024340:63466-63485 | None:intergenic | 25.0% |
| ! | TCTATGTGAAATCAAAAGTT+GGG | - | tig0024340:63654-63673 | None:intergenic | 25.0% |
| ! | TTCTATGTGAAATCAAAAGT+TGG | - | tig0024340:63655-63674 | None:intergenic | 25.0% |
| ! | CAGAAAGTTTATATTGTAGT+TGG | + | tig0024340:63809-63828 | Msa1416350:intron | 25.0% |
| ! | GTATACTTGTGAATTATCTA+TGG | + | tig0024340:64448-64467 | Msa1416350:intron | 25.0% |
| !! | ATATAGAATTAGCTTAGTCT+CGG | - | tig0024340:64661-64680 | None:intergenic | 25.0% |
| ! | GAAAATGAAGAATGATGAAA+AGG | - | tig0024340:64924-64943 | None:intergenic | 25.0% |
| ! | TCCAAATATGAAAATCAAAG+GGG | - | tig0024340:64958-64977 | None:intergenic | 25.0% |
| ! | GTCCAAATATGAAAATCAAA+GGG | - | tig0024340:64959-64978 | None:intergenic | 25.0% |
| ! | TGTCCAAATATGAAAATCAA+AGG | - | tig0024340:64960-64979 | None:intergenic | 25.0% |
| ! | AATTTGAAGAAAACAACATC+AGG | - | tig0024340:65044-65063 | None:intergenic | 25.0% |
| ! | TAGTATAATCTATAACTAGG+GGG | + | tig0024340:65193-65212 | Msa1416350:intron | 25.0% |
| !! | CTAATATTTTCATGCAGAAA+TGG | - | tig0024340:65325-65344 | None:intergenic | 25.0% |
| !! | ATGAAATTTAAGATTTGGAG+TGG | + | tig0024340:65360-65379 | Msa1416350:intron | 25.0% |
| ! | GAGATACTGCTTATAAAATT+CGG | - | tig0024340:65564-65583 | None:intergenic | 25.0% |
| !!! | CAAGGCATTGTATTTTTATT+GGG | - | tig0024340:65657-65676 | None:intergenic | 25.0% |
| !! | AAACTTTGATGATTCATTAC+AGG | + | tig0024340:65686-65705 | Msa1416350:intron | 25.0% |
| ! | GTTGATATTGAAGTTGTATA+TGG | + | tig0024340:65964-65983 | Msa1416350:three_prime_UTR | 25.0% |
| ! | ATATGGTGTTTGACATAATA+AGG | + | tig0024340:65981-66000 | Msa1416350:three_prime_UTR | 25.0% |
| AAAGTGAAAGTCAACTGAAA+GGG | - | tig0024340:60980-60999 | None:intergenic | 30.0% | |
| TAAAGTGAAAGTCAACTGAA+AGG | - | tig0024340:60981-61000 | None:intergenic | 30.0% | |
| AACAGTGACTAAAAATTCAC+AGG | - | tig0024340:61112-61131 | None:intergenic | 30.0% | |
| ATGATGTTTGTCAAATTCCT+TGG | + | tig0024340:61266-61285 | Msa1416350:intron | 30.0% | |
| AAGTACAAAAACAGGTTCAT+GGG | - | tig0024340:61293-61312 | None:intergenic | 30.0% | |
| AAAGTACAAAAACAGGTTCA+TGG | - | tig0024340:61294-61313 | None:intergenic | 30.0% | |
| ATACTAGTGTATCAATATGG+GGG | - | tig0024340:61393-61412 | None:intergenic | 30.0% | |
| CATACTAGTGTATCAATATG+GGG | - | tig0024340:61394-61413 | None:intergenic | 30.0% | |
| GCATACTAGTGTATCAATAT+GGG | - | tig0024340:61395-61414 | None:intergenic | 30.0% | |
| TGCATACTAGTGTATCAATA+TGG | - | tig0024340:61396-61415 | None:intergenic | 30.0% | |
| TTGATACACTAGTATGCATA+TGG | + | tig0024340:61398-61417 | Msa1416350:intron | 30.0% | |
| TATGCATATGGTATTCACTA+GGG | + | tig0024340:61410-61429 | Msa1416350:intron | 30.0% | |
| !! | AATTTTATGCATTGAGTTGC+CGG | + | tig0024340:61451-61470 | Msa1416350:intron | 30.0% |
| AGTAAACTATGAATCATACC+CGG | - | tig0024340:61473-61492 | None:intergenic | 30.0% | |
| !!! | GTTTTGAGTTGTTAGAGAAT+TGG | + | tig0024340:61616-61635 | Msa1416350:intron | 30.0% |
| AAACACATGATATTTGATCC+CGG | - | tig0024340:61771-61790 | None:intergenic | 30.0% | |
| !!! | CGTCATACATTTTATTTTGC+AGG | + | tig0024340:61894-61913 | Msa1416350:intron | 30.0% |
| TTTAAATAGCTCAGATGCTT+TGG | + | tig0024340:61948-61967 | Msa1416350:five_prime_UTR | 30.0% | |
| ATAGTTATGTACGCTATATC+TGG | + | tig0024340:62000-62019 | Msa1416350:exon | 30.0% | |
| ! | TAGCACTGGAAAATCTAAAA+AGG | + | tig0024340:62116-62135 | Msa1416350:CDS | 30.0% |
| AGCAGATATTTACCTGTAAA+TGG | + | tig0024340:62327-62346 | Msa1416350:CDS | 30.0% | |
| TAAAAGTGAAAATGCTTACC+TGG | - | tig0024340:62434-62453 | None:intergenic | 30.0% | |
| TTCTAACTAAGAGTTTGAGA+TGG | + | tig0024340:62559-62578 | Msa1416350:CDS | 30.0% | |
| CATTTGCATTCTTCAATTTC+AGG | + | tig0024340:62704-62723 | Msa1416350:intron | 30.0% | |
| ACATTTACAATGTGTACGAT+AGG | - | tig0024340:62747-62766 | None:intergenic | 30.0% | |
| ATCGTACACATTGTAAATGT+TGG | + | tig0024340:62747-62766 | Msa1416350:CDS | 30.0% | |
| CCAAAGATCATAATTCAATG+TGG | - | tig0024340:62811-62830 | None:intergenic | 30.0% | |
| CCACATTGAATTATGATCTT+TGG | + | tig0024340:62808-62827 | Msa1416350:intron | 30.0% | |
| TCAGAGGAATAGATACAAAT+TGG | + | tig0024340:62870-62889 | Msa1416350:intron | 30.0% | |
| !!! | TTTTCTAAGATGTCTGTAAC+TGG | + | tig0024340:62894-62913 | Msa1416350:intron | 30.0% |
| ATGAAAAGAACACCATCAAA+CGG | - | tig0024340:62935-62954 | None:intergenic | 30.0% | |
| ! | GATTTTTCATCAAATGACGA+TGG | + | tig0024340:63008-63027 | Msa1416350:CDS | 30.0% |
| ! | TCTGTGAAATTTTCAACAGA+TGG | + | tig0024340:63053-63072 | Msa1416350:CDS | 30.0% |
| ! | CTGTGAAATTTTCAACAGAT+GGG | + | tig0024340:63054-63073 | Msa1416350:CDS | 30.0% |
| AGTTTCATCAGCAAAACATA+CGG | - | tig0024340:63519-63538 | None:intergenic | 30.0% | |
| AGGTATGTTCTACAATAAGA+TGG | + | tig0024340:63579-63598 | Msa1416350:intron | 30.0% | |
| ATCTCATACTTATATCGTCA+AGG | + | tig0024340:63704-63723 | Msa1416350:intron | 30.0% | |
| TGTACAAAATTGTTTAGGTC+TGG | + | tig0024340:63881-63900 | Msa1416350:intron | 30.0% | |
| GTACAAAATTGTTTAGGTCT+GGG | + | tig0024340:63882-63901 | Msa1416350:intron | 30.0% | |
| ATTACATTTATTGATACCCG+TGG | + | tig0024340:63967-63986 | Msa1416350:CDS | 30.0% | |
| TGGGAAAGATAAAATTCATG+TGG | + | tig0024340:64178-64197 | Msa1416350:intron | 30.0% | |
| AGTAAAATACACCTTGTTCA+TGG | + | tig0024340:64233-64252 | Msa1416350:intron | 30.0% | |
| ACTCTAAATTTCCATGAACA+AGG | - | tig0024340:64247-64266 | None:intergenic | 30.0% | |
| !! | AACTCTAGTTAACTTGTATC+TGG | + | tig0024340:64281-64300 | Msa1416350:intron | 30.0% |
| CTAATGCATAATAGAGATAC+AGG | + | tig0024340:64370-64389 | Msa1416350:intron | 30.0% | |
| !!! | TGGATATAGGAGTTTTGAAT+GGG | + | tig0024340:64747-64766 | Msa1416350:CDS | 30.0% |
| TGAAGAATGATGAAAAGGTA+AGG | - | tig0024340:64919-64938 | None:intergenic | 30.0% | |
| !! | TCCCCTTTGATTTTCATATT+TGG | + | tig0024340:64954-64973 | Msa1416350:intron | 30.0% |
| TTTCTTCAAATTTACAGCAC+TGG | + | tig0024340:65052-65071 | Msa1416350:intron | 30.0% | |
| ATCCAGTATAGATATACTTC+TGG | - | tig0024340:65078-65097 | None:intergenic | 30.0% | |
| !! | TTTAGGCATTTTGCTATGTT+CGG | - | tig0024340:65415-65434 | None:intergenic | 30.0% |
| !! | TAGTAGTTTGCTGATTGTTT+AGG | - | tig0024340:65432-65451 | None:intergenic | 30.0% |
| !!! | GAGTATTAGAGTTTTGTTCA+TGG | + | tig0024340:65497-65516 | Msa1416350:intron | 30.0% |
| TAAAATTCGGTTATGAACAG+CGG | - | tig0024340:65551-65570 | None:intergenic | 30.0% | |
| !!! | GCAAGGCATTGTATTTTTAT+TGG | - | tig0024340:65658-65677 | None:intergenic | 30.0% |
| TCAAAGTTTCTTATTGAGCA+AGG | - | tig0024340:65675-65694 | None:intergenic | 30.0% | |
| AATCTCTTACAGGTGATTTA+TGG | - | tig0024340:65743-65762 | None:intergenic | 30.0% | |
| ! | ACTGATTTAACTGACATCAT+AGG | - | tig0024340:65908-65927 | None:intergenic | 30.0% |
| ! | AATCTTCTGCTTTGGGTAAT+TGG | - | tig0024340:60753-60772 | None:intergenic | 35.0% |
| TTCATGGAATCTTCTGCTTT+GGG | - | tig0024340:60760-60779 | None:intergenic | 35.0% | |
| CAAAAAGGGAAACATGTTCA+TGG | - | tig0024340:60776-60795 | None:intergenic | 35.0% | |
| ACCAAAAATTCCATCCTAAG+AGG | + | tig0024340:60846-60865 | Msa1416350:five_prime_UTR | 35.0% | |
| ! | ACCTCTTAGGATGGAATTTT+TGG | - | tig0024340:60850-60869 | None:intergenic | 35.0% |
| AAATTCCATCCTAAGAGGTA+TGG | + | tig0024340:60851-60870 | Msa1416350:intron | 35.0% | |
| AAGTGAAAGTCAACTGAAAG+GGG | - | tig0024340:60979-60998 | None:intergenic | 35.0% | |
| !! | TGTTGATGATGTTGTGGAAA+GGG | + | tig0024340:61128-61147 | Msa1416350:intron | 35.0% |
| ! | ATGTTGTGGAAAGGGTTTTT+GGG | + | tig0024340:61136-61155 | Msa1416350:intron | 35.0% |
| AAACAACGACTGAAAAGAAG+TGG | + | tig0024340:61203-61222 | Msa1416350:intron | 35.0% | |
| AGAAAACCATCCCCATTATA+AGG | + | tig0024340:61338-61357 | Msa1416350:intron | 35.0% | |
| TGGTTCTTTCGCCTTATAAT+GGG | - | tig0024340:61352-61371 | None:intergenic | 35.0% | |
| GTATGCATATGGTATTCACT+AGG | + | tig0024340:61409-61428 | Msa1416350:intron | 35.0% | |
| !! | ATTTTATGCATTGAGTTGCC+GGG | + | tig0024340:61452-61471 | Msa1416350:intron | 35.0% |
| TAGTTTACTGATAAGTGGGT+AGG | + | tig0024340:61484-61503 | Msa1416350:intron | 35.0% | |
| ! | TAGAGAGTATGTGCATAAAC+AGG | + | tig0024340:61661-61680 | Msa1416350:intron | 35.0% |
| TGATATTTGATCCCGGATTA+CGG | - | tig0024340:61764-61783 | None:intergenic | 35.0% | |
| ATCAACACGGAAAAATGTTG+CGG | - | tig0024340:61976-61995 | None:intergenic | 35.0% | |
| TACTCATAGCATAACCCATT+TGG | - | tig0024340:62041-62060 | None:intergenic | 35.0% | |
| !! | ATGAGGTGTTGATTTCAACT+TGG | - | tig0024340:62178-62197 | None:intergenic | 35.0% |
| ATCAACTGCTAGTACATGAT+GGG | + | tig0024340:62196-62215 | Msa1416350:CDS | 35.0% | |
| ATTTACCTGTAAATGGTCCT+TGG | + | tig0024340:62334-62353 | Msa1416350:CDS | 35.0% | |
| !!! | ATGGTTCACTTTTTGTTGCT+GGG | + | tig0024340:62406-62425 | Msa1416350:CDS | 35.0% |
| TATACAATGTGGACAAAGGT+TGG | + | tig0024340:62520-62539 | Msa1416350:CDS | 35.0% | |
| !! | TTACTAGATGGCTTTGATCA+GGG | - | tig0024340:62608-62627 | None:intergenic | 35.0% |
| AAAGCCATCTAGTAAGTAAC+TGG | + | tig0024340:62613-62632 | Msa1416350:intron | 35.0% | |
| GTTTCCAGTTACTTACTAGA+TGG | - | tig0024340:62620-62639 | None:intergenic | 35.0% | |
| !! | GTTTTGAATGCTATGATCAG+AGG | + | tig0024340:62854-62873 | Msa1416350:intron | 35.0% |
| ! | TTTTCATCAAATGACGATGG+AGG | + | tig0024340:63011-63030 | Msa1416350:CDS | 35.0% |
| ! | TGAAATTTTCAACAGATGGG+AGG | + | tig0024340:63057-63076 | Msa1416350:CDS | 35.0% |
| ! | GAAATTTTCAACAGATGGGA+GGG | + | tig0024340:63058-63077 | Msa1416350:CDS | 35.0% |
| ATTTATGGTGCAGTTTGAAG+CGG | + | tig0024340:63237-63256 | Msa1416350:intron | 35.0% | |
| ! | AGTTTGCTTAGCTGCATAAT+AGG | + | tig0024340:63288-63307 | Msa1416350:intron | 35.0% |
| GACACTGTCAATAGATTAAG+TGG | - | tig0024340:63321-63340 | None:intergenic | 35.0% | |
| !! | TTGGTTTTCATTTTACGTGC+AGG | + | tig0024340:63481-63500 | Msa1416350:intron | 35.0% |
| ! | GTATGTTTTGCTGATGAAAC+TGG | + | tig0024340:63518-63537 | Msa1416350:CDS | 35.0% |
| CACTTCCAGAGTAAATAAGA+TGG | - | tig0024340:63544-63563 | None:intergenic | 35.0% | |
| AAGTGATGATAGTTTCTGCA+AGG | + | tig0024340:63559-63578 | Msa1416350:CDS | 35.0% | |
| CAAAAGTTGGGATACTCAAA+AGG | - | tig0024340:63642-63661 | None:intergenic | 35.0% | |
| ! | GTAATGAACACCTTTTACAC+AGG | + | tig0024340:63675-63694 | Msa1416350:intron | 35.0% |
| AGATTGAACTCCTGTGTAAA+AGG | - | tig0024340:63688-63707 | None:intergenic | 35.0% | |
| CTTAAATGCTAAAGACAAGC+CGG | + | tig0024340:63915-63934 | Msa1416350:CDS | 35.0% | |
| CAATAAATGTAATGCCCTCA+AGG | - | tig0024340:63960-63979 | None:intergenic | 35.0% | |
| ! | GGACGCTATTTCATTTCAAA+CGG | + | tig0024340:63994-64013 | Msa1416350:CDS | 35.0% |
| AAGATCAGACCATCAAACTT+TGG | + | tig0024340:64019-64038 | Msa1416350:CDS | 35.0% | |
| AGATCAGACCATCAAACTTT+GGG | + | tig0024340:64020-64039 | Msa1416350:CDS | 35.0% | |
| AAATGTCATCCAATGTTACC+AGG | + | tig0024340:64052-64071 | Msa1416350:CDS | 35.0% | |
| CAACAGATATGGATACCAAA+AGG | - | tig0024340:64091-64110 | None:intergenic | 35.0% | |
| ACCTTATAGAAATGTGTGCT+CGG | - | tig0024340:64401-64420 | None:intergenic | 35.0% | |
| TATGATTGTTCGCAATGCAA+AGG | + | tig0024340:64678-64697 | Msa1416350:intron | 35.0% | |
| !!! | GTGGATATAGGAGTTTTGAA+TGG | + | tig0024340:64746-64765 | Msa1416350:CDS | 35.0% |
| ! | TGATTCAAGTCTTTTGCTTG+TGG | - | tig0024340:64796-64815 | None:intergenic | 35.0% |
| TTGTAAAATGGCAATCTGCT+GGG | + | tig0024340:65817-65836 | Msa1416350:CDS | 35.0% | |
| GTTCATGGAATCTTCTGCTT+TGG | - | tig0024340:60761-60780 | None:intergenic | 40.0% | |
| TGATACAGACCATACCTCTT+AGG | - | tig0024340:60863-60882 | None:intergenic | 40.0% | |
| !! | AGTCACTGTTGATGATGTTG+TGG | + | tig0024340:61122-61141 | Msa1416350:intron | 40.0% |
| !! | CTGTTGATGATGTTGTGGAA+AGG | + | tig0024340:61127-61146 | Msa1416350:intron | 40.0% |
| ! | GATGTTGTGGAAAGGGTTTT+TGG | + | tig0024340:61135-61154 | Msa1416350:intron | 40.0% |
| ! | TGTTGTGGAAAGGGTTTTTG+GGG | + | tig0024340:61137-61156 | Msa1416350:intron | 40.0% |
| GGTTCTTTCGCCTTATAATG+GGG | - | tig0024340:61351-61370 | None:intergenic | 40.0% | |
| GTGGTTCTTTCGCCTTATAA+TGG | - | tig0024340:61353-61372 | None:intergenic | 40.0% | |
| TGCATAAACAGGAGAACACA+AGG | + | tig0024340:61672-61691 | Msa1416350:intron | 40.0% | |
| AGACACAATTGACCGTAATC+CGG | + | tig0024340:61749-61768 | Msa1416350:intron | 40.0% | |
| TTTGCAGGATTGACAAACAC+AGG | + | tig0024340:61909-61928 | Msa1416350:intron | 40.0% | |
| TTGCAGGATTGACAAACACA+GGG | + | tig0024340:61910-61929 | Msa1416350:intron | 40.0% | |
| TGCACTTTACGTTGACCAAA+TGG | + | tig0024340:62023-62042 | Msa1416350:CDS | 40.0% | |
| GCACTTTACGTTGACCAAAT+GGG | + | tig0024340:62024-62043 | Msa1416350:CDS | 40.0% | |
| TGCTATGAGTAGATTAGACG+TGG | + | tig0024340:62050-62069 | Msa1416350:CDS | 40.0% | |
| GACTCTAGTGATACTGAAGA+TGG | + | tig0024340:62072-62091 | Msa1416350:CDS | 40.0% | |
| ATCCTTGAAGATTCTAGCAC+TGG | + | tig0024340:62102-62121 | Msa1416350:CDS | 40.0% | |
| TTCCAGTGCTAGAATCTTCA+AGG | - | tig0024340:62107-62126 | None:intergenic | 40.0% | |
| ! | TCATGTACTAGCAGTTGATG+AGG | - | tig0024340:62195-62214 | None:intergenic | 40.0% |
| CATCAACTGCTAGTACATGA+TGG | + | tig0024340:62195-62214 | Msa1416350:CDS | 40.0% | |
| !!! | GATGGTTCACTTTTTGTTGC+TGG | + | tig0024340:62405-62424 | Msa1416350:CDS | 40.0% |
| !! | TACTAGATGGCTTTGATCAG+GGG | - | tig0024340:62607-62626 | None:intergenic | 40.0% |
| !! | CTTACTAGATGGCTTTGATC+AGG | - | tig0024340:62609-62628 | None:intergenic | 40.0% |
| AGAGTCACTAGCAAATGTGA+CGG | + | tig0024340:62782-62801 | Msa1416350:CDS | 40.0% | |
| CTGTAACTGGTGTATGTACA+AGG | + | tig0024340:62907-62926 | Msa1416350:intron | 40.0% | |
| ATGTACAAGGTTCCGTTTGA+TGG | + | tig0024340:62920-62939 | Msa1416350:intron | 40.0% | |
| ATGAAAAATCCAACCCATCG+TGG | - | tig0024340:62998-63017 | None:intergenic | 40.0% | |
| GAATTAGTTGCAGGAACTAG+TGG | + | tig0024340:63080-63099 | Msa1416350:CDS | 40.0% | |
| ! | TTTATGGTGCAGTTTGAAGC+GGG | + | tig0024340:63238-63257 | Msa1416350:intron | 40.0% |
| ! | CATATTGGGATGGCTCTATA+TGG | + | tig0024340:63420-63439 | Msa1416350:intron | 40.0% |
| ! | ACTGGCCATCTTATTTACTC+TGG | + | tig0024340:63536-63555 | Msa1416350:CDS | 40.0% |
| AGTTGGGATACTCAAAAGGA+GGG | - | tig0024340:63638-63657 | None:intergenic | 40.0% | |
| AAGTTGGGATACTCAAAAGG+AGG | - | tig0024340:63639-63658 | None:intergenic | 40.0% | |
| !! | GTTGTTTTGTTCTTTCCCTC+TGG | + | tig0024340:63833-63852 | Msa1416350:intron | 40.0% |
| TTTATTGATACCCGTGGAGA+TGG | + | tig0024340:63973-63992 | Msa1416350:CDS | 40.0% | |
| ACGTATGTCCCAAAGTTTGA+TGG | - | tig0024340:64031-64050 | None:intergenic | 40.0% | |
| ! | AAGAGCATACCTGGTAACAT+TGG | - | tig0024340:64064-64083 | None:intergenic | 40.0% |
| ! | AAAGGCTAAAAGAGCATACC+TGG | - | tig0024340:64073-64092 | None:intergenic | 40.0% |
| !! | GGTATGCTCTTTTAGCCTTT+TGG | + | tig0024340:64073-64092 | Msa1416350:intron | 40.0% |
| AACCATAAGTCTGTGACTGA+TGG | + | tig0024340:64332-64351 | Msa1416350:intron | 40.0% | |
| ACCATAAGTCTGTGACTGAT+GGG | + | tig0024340:64333-64352 | Msa1416350:intron | 40.0% | |
| TCCGAGCACACATTTCTATA+AGG | + | tig0024340:64397-64416 | Msa1416350:intron | 40.0% | |
| GACACAGAATCATCGTTGAT+TGG | - | tig0024340:64573-64592 | None:intergenic | 40.0% | |
| AGGAACAGACAACATTAGCT+AGG | - | tig0024340:64636-64655 | None:intergenic | 40.0% | |
| ! | GAATTAGCTTAGTCTCGGAT+AGG | - | tig0024340:64656-64675 | None:intergenic | 40.0% |
| AATTTCAGTAACCGTGTTCG+TGG | + | tig0024340:64727-64746 | Msa1416350:intron | 40.0% | |
| AACTCCTATATCCACGAACA+CGG | - | tig0024340:64741-64760 | None:intergenic | 40.0% | |
| !!! | GGAGTTTTGAATGGGATTAC+AGG | + | tig0024340:64755-64774 | Msa1416350:CDS | 40.0% |
| !! | GTTTTGAATGGGATTACAGG+TGG | + | tig0024340:64758-64777 | Msa1416350:CDS | 40.0% |
| ! | TTCAAGTCTTTTGCTTGTGG+CGG | - | tig0024340:64793-64812 | None:intergenic | 40.0% |
| !! | GCTTTTTCTCTCCAGCTTTT+AGG | + | tig0024340:64878-64897 | Msa1416350:CDS | 40.0% |
| TTTAGTGGTCACCTAAAAGC+TGG | - | tig0024340:64892-64911 | None:intergenic | 40.0% | |
| !! | CTTTTAGGTGACCACTAAAC+TGG | + | tig0024340:64893-64912 | Msa1416350:intron | 40.0% |
| AAAAGGTAAGGCCAGTTTAG+TGG | - | tig0024340:64907-64926 | None:intergenic | 40.0% | |
| ! | GGCCAGAAGTATATCTATAC+TGG | + | tig0024340:65073-65092 | Msa1416350:CDS | 40.0% |
| AATCTATAACTAGGGGGAAG+AGG | + | tig0024340:65199-65218 | Msa1416350:intron | 40.0% | |
| ATCTATAACTAGGGGGAAGA+GGG | + | tig0024340:65200-65219 | Msa1416350:intron | 40.0% | |
| TCTCCTTGAACTTTGATTCC+TGG | + | tig0024340:65520-65539 | Msa1416350:intron | 40.0% | |
| GATGATTCATTACAGGTGAG+TGG | + | tig0024340:65693-65712 | Msa1416350:intron | 40.0% | |
| CACCTGTAAGAGATTGTAGT+TGG | + | tig0024340:65748-65767 | Msa1416350:CDS | 40.0% | |
| TGCCAACTACAATCTCTTAC+AGG | - | tig0024340:65753-65772 | None:intergenic | 40.0% | |
| AAGAAGAGCTAACGAGCATA+GGG | - | tig0024340:65785-65804 | None:intergenic | 40.0% | |
| ! | TATGCTCGTTAGCTCTTCTT+GGG | + | tig0024340:65785-65804 | Msa1416350:CDS | 40.0% |
| GGGATGGAGATGTTGTAAAA+TGG | + | tig0024340:65805-65824 | Msa1416350:CDS | 40.0% | |
| GTTGTAAAATGGCAATCTGC+TGG | + | tig0024340:65816-65835 | Msa1416350:CDS | 40.0% | |
| ACAGACCATACCTCTTAGGA+TGG | - | tig0024340:60859-60878 | None:intergenic | 45.0% | |
| !!! | AAGGGTTTTTGGGGTCATAG+AGG | + | tig0024340:61146-61165 | Msa1416350:intron | 45.0% |
| !!! | GTTTTTGGGGTCATAGAGGT+GGG | + | tig0024340:61150-61169 | Msa1416350:intron | 45.0% |
| !!! | TTTTTGGGGTCATAGAGGTG+GGG | + | tig0024340:61151-61170 | Msa1416350:intron | 45.0% |
| ACGACTGAAAAGAAGTGGCT+TGG | + | tig0024340:61208-61227 | Msa1416350:intron | 45.0% | |
| CGACTGAAAAGAAGTGGCTT+GGG | + | tig0024340:61209-61228 | Msa1416350:intron | 45.0% | |
| AAAACAGGTTCATGGGACCA+AGG | - | tig0024340:61286-61305 | None:intergenic | 45.0% | |
| ! | CTTTCGCCTTATAATGGGGA+TGG | - | tig0024340:61347-61366 | None:intergenic | 45.0% |
| !! | AGTTTGTTGGGCTTCAACTG+CGG | + | tig0024340:61514-61533 | Msa1416350:intron | 45.0% |
| GACACAATTGACCGTAATCC+GGG | + | tig0024340:61750-61769 | Msa1416350:intron | 45.0% | |
| TGCAGGATTGACAAACACAG+GGG | + | tig0024340:61911-61930 | Msa1416350:intron | 45.0% | |
| !! | TAGTACATGATGGGTCTGGA+AGG | + | tig0024340:62205-62224 | Msa1416350:CDS | 45.0% |
| GTCCTGAACAATTGGATTCG+CGG | - | tig0024340:62269-62288 | None:intergenic | 45.0% | |
| GCGAATCCAATTGTTCAGGA+CGG | + | tig0024340:62268-62287 | Msa1416350:CDS | 45.0% | |
| CGAATCCAATTGTTCAGGAC+GGG | + | tig0024340:62269-62288 | Msa1416350:CDS | 45.0% | |
| GAATCCAATTGTTCAGGACG+GGG | + | tig0024340:62270-62289 | Msa1416350:CDS | 45.0% | |
| CAAAAGATGACAGCGATCAG+CGG | - | tig0024340:62307-62326 | None:intergenic | 45.0% | |
| ATAGGCCAAGGACCATTTAC+AGG | - | tig0024340:62342-62361 | None:intergenic | 45.0% | |
| ! | GTGTCTCAGTTTTCAGCTGA+TGG | + | tig0024340:62387-62406 | Msa1416350:CDS | 45.0% |
| ! | ACTTTTTGTTGCTGGGTTCC+AGG | + | tig0024340:62413-62432 | Msa1416350:CDS | 45.0% |
| AATATGCAGGAGATCCACGA+TGG | + | tig0024340:62981-63000 | Msa1416350:intron | 45.0% | |
| ATATGCAGGAGATCCACGAT+GGG | + | tig0024340:62982-63001 | Msa1416350:intron | 45.0% | |
| ! | GACGATGGAGGATACTCTTT+TGG | + | tig0024340:63023-63042 | Msa1416350:CDS | 45.0% |
| !! | GCTTCGAATTTTAGCGCACA+CGG | + | tig0024340:63145-63164 | Msa1416350:CDS | 45.0% |
| !! | GTTTTGATGGGACACCTTGA+GGG | + | tig0024340:63943-63962 | Msa1416350:CDS | 45.0% |
| TGAAATAGCGTCCATCTCCA+CGG | - | tig0024340:63987-64006 | None:intergenic | 45.0% | |
| ACCCATCAGTCACAGACTTA+TGG | - | tig0024340:64337-64356 | None:intergenic | 45.0% | |
| ! | AAGTCTGTGACTGATGGGTA+TGG | + | tig0024340:64338-64357 | Msa1416350:intron | 45.0% |
| TTTGTGTCAGCTTGTCTGTC+TGG | + | tig0024340:64595-64614 | Msa1416350:intron | 45.0% | |
| GTAACCGTGTTCGTGGATAT+AGG | + | tig0024340:64734-64753 | Msa1416350:intron | 45.0% | |
| TGAATGGGATTACAGGTGGA+TGG | + | tig0024340:64762-64781 | Msa1416350:CDS | 45.0% | |
| ! | TCAAGTCTTTTGCTTGTGGC+GGG | - | tig0024340:64792-64811 | None:intergenic | 45.0% |
| TCATCCTTGTGATCAGTCAG+TGG | + | tig0024340:64813-64832 | Msa1416350:CDS | 45.0% | |
| ! | CAAGAGTGCGTAAGACTGAA+TGG | - | tig0024340:64852-64871 | None:intergenic | 45.0% |
| AAGCTGGAGAGAAAAAGCAG+CGG | - | tig0024340:64876-64895 | None:intergenic | 45.0% | |
| AGGCCAGGAATCAAAGTTCA+AGG | - | tig0024340:65526-65545 | None:intergenic | 45.0% | |
| CAAGAAGAGCTAACGAGCAT+AGG | - | tig0024340:65786-65805 | None:intergenic | 45.0% | |
| ! | CTATGCTCGTTAGCTCTTCT+TGG | + | tig0024340:65784-65803 | Msa1416350:CDS | 45.0% |
| !!! | TAATTTATTTATCATTTTTA+TGG | + | tig0024340:63385-63404 | Msa1416350:intron | 5.0% |
| !!! | GGTTTTTGGGGTCATAGAGG+TGG | + | tig0024340:61149-61168 | Msa1416350:intron | 50.0% |
| GGAGCTTCGTAGAACAAGTG+TGG | - | tig0024340:61372-61391 | None:intergenic | 50.0% | |
| ! | GTAGGTCGCTCGAGTTTGTT+GGG | + | tig0024340:61502-61521 | Msa1416350:intron | 50.0% |
| ! | GTTTGTTGGGCTTCAACTGC+GGG | + | tig0024340:61515-61534 | Msa1416350:intron | 50.0% |
| !! | CTGCTAGTACATGATGGGTC+TGG | + | tig0024340:62201-62220 | Msa1416350:CDS | 50.0% |
| GAAAGAGTTGCCTGTTTCCC+CGG | + | tig0024340:62227-62246 | Msa1416350:CDS | 50.0% | |
| CGACTAGGCATTTGGTCGAT+AGG | - | tig0024340:62360-62379 | None:intergenic | 50.0% | |
| CGTATGCTCGACTAGGCATT+TGG | - | tig0024340:62368-62387 | None:intergenic | 50.0% | |
| TGAGACACGTATGCTCGACT+AGG | - | tig0024340:62375-62394 | None:intergenic | 50.0% | |
| GTGTACGATAGGTGACATGC+TGG | - | tig0024340:62736-62755 | None:intergenic | 50.0% | |
| GATGGGAGGGAATTAGTTGC+AGG | + | tig0024340:63071-63090 | Msa1416350:CDS | 50.0% | |
| GTTCTTTCCCTCTGGACTTC+AGG | + | tig0024340:63841-63860 | Msa1416350:intron | 50.0% | |
| ! | TTCCCTCTGGACTTCAGGTT+AGG | + | tig0024340:63846-63865 | Msa1416350:intron | 50.0% |
| ! | TCCCTCTGGACTTCAGGTTA+GGG | + | tig0024340:63847-63866 | Msa1416350:intron | 50.0% |
| TCCCTAACCTGAAGTCCAGA+GGG | - | tig0024340:63851-63870 | None:intergenic | 50.0% | |
| AATGCTAAAGACAAGCCGGC+AGG | + | tig0024340:63919-63938 | Msa1416350:CDS | 50.0% | |
| ATGCTAAAGACAAGCCGGCA+GGG | + | tig0024340:63920-63939 | Msa1416350:CDS | 50.0% | |
| !! | GGTTTTGATGGGACACCTTG+AGG | + | tig0024340:63942-63961 | Msa1416350:CDS | 50.0% |
| GAAATAGCGTCCATCTCCAC+GGG | - | tig0024340:63986-64005 | None:intergenic | 50.0% | |
| ! | TGCTAGAGCACTTCTGCTGA+TGG | + | tig0024340:64158-64177 | Msa1416350:intron | 50.0% |
| ! | GCTAGAGCACTTCTGCTGAT+GGG | + | tig0024340:64159-64178 | Msa1416350:intron | 50.0% |
| ! | GTAGCCACTGACTGATCACA+AGG | - | tig0024340:64820-64839 | None:intergenic | 50.0% |
| CAGTCAGTGGCTACGTATAG+AGG | + | tig0024340:64826-64845 | Msa1416350:CDS | 50.0% | |
| TATAACTAGGGGGAAGAGGG+AGG | + | tig0024340:65203-65222 | Msa1416350:intron | 50.0% | |
| CTAACGAGCATAGGGTGGAA+AGG | - | tig0024340:65777-65796 | None:intergenic | 50.0% | |
| AAGAGCTAACGAGCATAGGG+TGG | - | tig0024340:65782-65801 | None:intergenic | 50.0% | |
| ! | CTCGTTAGCTCTTCTTGGGA+TGG | + | tig0024340:65789-65808 | Msa1416350:CDS | 50.0% |
| ! | AGCCTCGTCGGTTAAGAAGA+GGG | + | tig0024340:65854-65873 | Msa1416350:CDS | 50.0% |
| TACCCTCTTCTTAACCGACG+AGG | - | tig0024340:65859-65878 | None:intergenic | 50.0% | |
| GGTAGGTCGCTCGAGTTTGT+TGG | + | tig0024340:61501-61520 | Msa1416350:intron | 55.0% | |
| AGCATCTTCACCGGGGAAAC+AGG | - | tig0024340:62240-62259 | None:intergenic | 55.0% | |
| TGTTTCCCCGGTGAAGATGC+TGG | + | tig0024340:62239-62258 | Msa1416350:CDS | 55.0% | |
| GGCCGCGAATCCAATTGTTC+AGG | + | tig0024340:62264-62283 | Msa1416350:CDS | 55.0% | |
| CCTTCCCCGTCCTGAACAAT+TGG | - | tig0024340:62277-62296 | None:intergenic | 55.0% | |
| CCAATTGTTCAGGACGGGGA+AGG | + | tig0024340:62274-62293 | Msa1416350:CDS | 55.0% | |
| GGCATTTGGTCGATAGGCCA+AGG | - | tig0024340:62354-62373 | None:intergenic | 55.0% | |
| ! | ATGGTGCAGTTTGAAGCGGG+TGG | + | tig0024340:63241-63260 | Msa1416350:intron | 55.0% |
| GTCCCTAACCTGAAGTCCAG+AGG | - | tig0024340:63852-63871 | None:intergenic | 55.0% | |
| TGCTAAAGACAAGCCGGCAG+GGG | + | tig0024340:63921-63940 | Msa1416350:CDS | 55.0% | |
| !! | AAGCCGGCAGGGGTTTTGAT+GGG | + | tig0024340:63931-63950 | Msa1416350:CDS | 55.0% |
| TGTCCCATCAAAACCCCTGC+CGG | - | tig0024340:63937-63956 | None:intergenic | 55.0% | |
| TTCGGTTATGAACAGCGGCG+AGG | - | tig0024340:65546-65565 | None:intergenic | 55.0% | |
| ! | ATCTGCTGGGAGCTCTGATG+TGG | + | tig0024340:65830-65849 | Msa1416350:CDS | 55.0% |
| ! | CAGCCTCGTCGGTTAAGAAG+AGG | + | tig0024340:65853-65872 | Msa1416350:CDS | 55.0% |
| GCAGGAGATCCACGATGGGT+TGG | + | tig0024340:62986-63005 | Msa1416350:intron | 60.0% | |
| !! | CAAGCCGGCAGGGGTTTTGA+TGG | + | tig0024340:63930-63949 | Msa1416350:CDS | 60.0% |
| CTAGGGGGAAGAGGGAGGAT+AGG | + | tig0024340:65208-65227 | Msa1416350:intron | 60.0% | |
| TTATGAACAGCGGCGAGGCC+AGG | - | tig0024340:65541-65560 | None:intergenic | 60.0% | |
| CTCTGATGTGGCAGCCTCGT+CGG | + | tig0024340:65842-65861 | Msa1416350:CDS | 60.0% | |
| TCCCCGGTGAAGATGCTGGC+AGG | + | tig0024340:62243-62262 | Msa1416350:CDS | 65.0% | |
| GCCTGCCAGCATCTTCACCG+GGG | - | tig0024340:62247-62266 | None:intergenic | 65.0% | |
| GGCCTGCCAGCATCTTCACC+GGG | - | tig0024340:62248-62267 | None:intergenic | 65.0% | |
| CGGCCTGCCAGCATCTTCAC+CGG | - | tig0024340:62249-62268 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024340 | gene | 60681 | 66070 | 60681 | ID=Msa1416350;Name=Msa1416350 |
| tig0024340 | mRNA | 60681 | 66070 | 60681 | ID=Msa1416350-mRNA-1;Parent=Msa1416350;Name=Msa1416350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=277|1|1|1|0.88|0.8|10|159|495 |
| tig0024340 | exon | 60681 | 60867 | 60681 | ID=Msa1416350-mRNA-1:exon:22898;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 61916 | 62434 | 61916 | ID=Msa1416350-mRNA-1:exon:22899;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 62504 | 62623 | 62504 | ID=Msa1416350-mRNA-1:exon:22900;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 62726 | 62803 | 62726 | ID=Msa1416350-mRNA-1:exon:22901;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 62990 | 63166 | 62990 | ID=Msa1416350-mRNA-1:exon:22902;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 63503 | 63580 | 63503 | ID=Msa1416350-mRNA-1:exon:22903;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 63898 | 64073 | 63898 | ID=Msa1416350-mRNA-1:exon:22904;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 64735 | 64899 | 64735 | ID=Msa1416350-mRNA-1:exon:22905;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 65069 | 65129 | 65069 | ID=Msa1416350-mRNA-1:exon:22906;Parent=Msa1416350-mRNA-1 |
| tig0024340 | exon | 65708 | 66070 | 65708 | ID=Msa1416350-mRNA-1:exon:22907;Parent=Msa1416350-mRNA-1 |
| tig0024340 | five_prime_UTR | 60681 | 60867 | 60681 | ID=Msa1416350-mRNA-1:five_prime_utr;Parent=Msa1416350-mRNA-1 |
| tig0024340 | five_prime_UTR | 61916 | 62005 | 61916 | ID=Msa1416350-mRNA-1:five_prime_utr;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 62006 | 62434 | 62006 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 62504 | 62623 | 62504 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 62726 | 62803 | 62726 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 62990 | 63166 | 62990 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 63503 | 63580 | 63503 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 63898 | 64073 | 63898 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 64735 | 64899 | 64735 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 65069 | 65129 | 65069 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | CDS | 65708 | 65911 | 65708 | ID=Msa1416350-mRNA-1:cds;Parent=Msa1416350-mRNA-1 |
| tig0024340 | three_prime_UTR | 65912 | 66070 | 65912 | ID=Msa1416350-mRNA-1:three_prime_utr;Parent=Msa1416350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
