Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130170 | AES92197.1 | 80.822 | 73 | 14 | 0 | 55 | 127 | 79 | 151 | 1.18e-32 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130170 | sp|Q9MUK5|TOC64_PEA | 73.973 | 73 | 19 | 0 | 51 | 123 | 519 | 591 | 1.29e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130170 | G7JT73 | 80.822 | 73 | 14 | 0 | 55 | 127 | 79 | 151 | 5.65e-33 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0130170 | Msa0842620 | 0.897285 | 1.630204e-76 | -8.615850e-47 |
| Msa0130170 | Msa1006660 | 0.828906 | 6.927881e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130170 | MtrunA17_Chr8g0393041 | 80.822 | 73 | 14 | 0 | 51 | 123 | 521 | 593 | 1.06e-32 | 120 |
| Msa0130170 | MtrunA17_Chr4g0050371 | 60.938 | 64 | 25 | 0 | 62 | 125 | 541 | 604 | 1.39e-17 | 77.8 |
| Msa0130170 | MtrunA17_Chr6g0478601 | 91.892 | 37 | 1 | 1 | 24 | 60 | 344 | 378 | 2.88e-16 | 73.9 |
| Msa0130170 | MtrunA17_Chr1g0192811 | 45.000 | 60 | 33 | 0 | 52 | 111 | 133 | 192 | 2.71e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130170 | AT3G17970.1 | 68.254 | 63 | 20 | 0 | 59 | 121 | 524 | 586 | 4.89e-22 | 90.9 |
| Msa0130170 | AT5G09420.1 | 59.091 | 66 | 27 | 0 | 59 | 124 | 538 | 603 | 4.99e-17 | 76.6 |
| Msa0130170 | AT3G17850.1 | 78.378 | 37 | 6 | 1 | 24 | 60 | 1115 | 1149 | 1.95e-13 | 66.2 |
| Msa0130170 | AT1G56440.1 | 41.667 | 72 | 42 | 0 | 56 | 127 | 130 | 201 | 3.76e-11 | 59.7 |
| Msa0130170 | AT1G56440.2 | 41.667 | 72 | 42 | 0 | 56 | 127 | 120 | 191 | 4.21e-11 | 59.7 |
Find 58 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCACCTTAAACATATAAA+TGG | 0.168104 | 1_3:+60265442 | None:intergenic |
| TAGTCCCATTTATATGTTTA+AGG | 0.189143 | 1_3:-60265447 | Msa0130170:intron |
| CTCTGCATTTGGTTTCGGTT+TGG | 0.234207 | 1_3:-60265610 | Msa0130170:five_prime_UTR |
| AATTACTCAAGAAAAGTTAA+AGG | 0.255467 | 1_3:-60264392 | Msa0130170:CDS |
| TCTGCATTTGGTTTCGGTTT+GGG | 0.259919 | 1_3:-60265609 | Msa0130170:five_prime_UTR |
| CTCATTTCGTCGGGAACTTC+AGG | 0.295980 | 1_3:+60264924 | None:intergenic |
| ATGGAGATTGGCTCTGCATT+TGG | 0.319478 | 1_3:-60265621 | Msa0130170:five_prime_UTR |
| CTGCGGATTGGTGGTCTGTT+GGG | 0.324256 | 1_3:-60265130 | Msa0130170:CDS |
| ATTGGCTCTGCATTTGGTTT+CGG | 0.339363 | 1_3:-60265615 | Msa0130170:five_prime_UTR |
| TCTCTCTAGTTGTACCTCTA+TGG | 0.346394 | 1_3:+60264518 | None:intergenic |
| AGGTACAACTAGAGAGATAC+TGG | 0.350120 | 1_3:-60264512 | Msa0130170:CDS |
| CGTTCCCTTCCTCCGTTCTC+AGG | 0.381241 | 1_3:+60265548 | None:intergenic |
| AATAAGCGGCTGCGATTTGA+CGG | 0.416652 | 1_3:+60266443 | None:intergenic |
| ACTGCGGATTGGTGGTCTGT+TGG | 0.420353 | 1_3:-60265131 | Msa0130170:CDS |
| GGTTGGCTTACCATGGCTTA+AGG | 0.426114 | 1_3:+60266399 | None:intergenic |
| ATCTCAGGAGCTAAGTAATC+AGG | 0.429237 | 1_3:+60265497 | None:intergenic |
| GGTATTCCACCCTTCAACTC+AGG | 0.431664 | 1_3:-60265083 | Msa0130170:intron |
| TACTTGAGCCAACCAACAAA+AGG | 0.440758 | 1_3:-60264447 | Msa0130170:CDS |
| TGTTGGTTGGCTCAAGTACA+AGG | 0.448590 | 1_3:+60264452 | None:intergenic |
| CCAGTTCCTAAAAGTATCTC+AGG | 0.463458 | 1_3:+60265482 | None:intergenic |
| CAAAGTTAAACCTGAGTTGA+AGG | 0.467216 | 1_3:+60265073 | None:intergenic |
| ACCACCTTAAACATATAAAT+GGG | 0.471103 | 1_3:+60265443 | None:intergenic |
| TTCTTAATCGTAAGATACCT+TGG | 0.479559 | 1_3:-60264947 | Msa0130170:CDS |
| CTAAATCTCAGCATGGAGAT+TGG | 0.479851 | 1_3:-60265633 | Msa0130170:five_prime_UTR |
| CAGCGTATACTGCGGATTGG+TGG | 0.508993 | 1_3:-60265139 | Msa0130170:CDS |
| AGGAAGAAGCGTTCCGCTGT+TGG | 0.509264 | 1_3:-60265524 | Msa0130170:five_prime_UTR |
| GCTTCAAGACTCATTTCGTC+GGG | 0.510873 | 1_3:+60264915 | None:intergenic |
| TGCTTCAAGACTCATTTCGT+CGG | 0.519672 | 1_3:+60264914 | None:intergenic |
| TTGCAGCGTATACTGCGGAT+TGG | 0.527291 | 1_3:-60265142 | Msa0130170:intron |
| CTTCTGTGAAGGAGTACATC+GGG | 0.531712 | 1_3:+60266530 | None:intergenic |
| TGTGAAGGAGTACATCGGGC+TGG | 0.548782 | 1_3:+60266534 | None:intergenic |
| TAGCTCCTGAGAACGGAGGA+AGG | 0.550507 | 1_3:-60265553 | Msa0130170:five_prime_UTR |
| TCGTCGGGAACTTCAGGCCA+AGG | 0.554191 | 1_3:+60264930 | None:intergenic |
| TGCGGATTGGTGGTCTGTTG+GGG | 0.554893 | 1_3:-60265129 | Msa0130170:CDS |
| ACTTGAGCCAACCAACAAAA+GGG | 0.575182 | 1_3:-60264446 | Msa0130170:CDS |
| TTCTCAATCACCTTAAGCCA+TGG | 0.575733 | 1_3:-60266409 | Msa0130170:intron |
| TTGTACAATCTGCCTCAGCT+TGG | 0.578994 | 1_3:+60264581 | None:intergenic |
| CTGAGAACGGAGGAAGGGAA+CGG | 0.588381 | 1_3:-60265547 | Msa0130170:five_prime_UTR |
| GATTACTTAGCTCCTGAGAA+CGG | 0.591680 | 1_3:-60265560 | Msa0130170:five_prime_UTR |
| AAGCACATGATCTTATTGAT+CGG | 0.593041 | 1_3:-60264896 | Msa0130170:intron |
| AGCTCCTGAGAACGGAGGAA+GGG | 0.604860 | 1_3:-60265552 | Msa0130170:five_prime_UTR |
| GAAACAACAGTGGCGAACAG+AGG | 0.605975 | 1_3:+60266467 | None:intergenic |
| AAAGTTAAACCTGAGTTGAA+GGG | 0.612794 | 1_3:+60265074 | None:intergenic |
| GTTAAACCTGAGTTGAAGGG+TGG | 0.613746 | 1_3:+60265077 | None:intergenic |
| ATTTAGCTACTCCACTGTCA+TGG | 0.615983 | 1_3:+60265650 | None:intergenic |
| ATGAAGGCATACTTCCATAG+AGG | 0.619428 | 1_3:-60264532 | Msa0130170:CDS |
| ACAGAAATACACTTCTGTGA+AGG | 0.623114 | 1_3:+60266519 | None:intergenic |
| GAACTGAGAGAGAGAATAAG+CGG | 0.625438 | 1_3:+60266429 | None:intergenic |
| GTTGGTTGGCTCAAGTACAA+GGG | 0.632408 | 1_3:+60264453 | None:intergenic |
| TTGCAAGGCTACCATGACAG+TGG | 0.641686 | 1_3:-60265661 | Msa0130170:intron |
| AGAACGGAGGAAGGGAACGG+AGG | 0.664935 | 1_3:-60265544 | Msa0130170:five_prime_UTR |
| GGTACAACTAGAGAGATACT+GGG | 0.665492 | 1_3:-60264511 | Msa0130170:CDS |
| GGAGTAGCTAAATCTCAGCA+TGG | 0.665734 | 1_3:-60265640 | Msa0130170:five_prime_UTR |
| ACTTCTGTGAAGGAGTACAT+CGG | 0.671800 | 1_3:+60266529 | None:intergenic |
| GTAATCAGGTGTGCCAACAG+CGG | 0.675334 | 1_3:+60265511 | None:intergenic |
| TGGCAGTTATCTCCAAGCTG+AGG | 0.688754 | 1_3:-60264593 | Msa0130170:intron |
| TACTTAGCTCCTGAGAACGG+AGG | 0.696955 | 1_3:-60265557 | Msa0130170:five_prime_UTR |
| ATTTGACGGAGAAACAACAG+TGG | 0.773074 | 1_3:+60266457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTGAAATTAAC+AGG | - | chr1_3:60264923-60264942 | Msa0130170:CDS | 10.0% |
| !!! | ATTTTATTTTGAAATTAACA+GGG | - | chr1_3:60264924-60264943 | Msa0130170:CDS | 10.0% |
| !!! | TGTTTATATTTTTATTCTTT+TGG | - | chr1_3:60265885-60265904 | Msa0130170:intron | 10.0% |
| !!! | TATTTTATTTTGAAATTAAC+AGG | - | chr1_3:60264923-60264942 | Msa0130170:CDS | 10.0% |
| !!! | ATTTTATTTTGAAATTAACA+GGG | - | chr1_3:60264924-60264943 | Msa0130170:CDS | 10.0% |
| !!! | TGTTTATATTTTTATTCTTT+TGG | - | chr1_3:60265885-60265904 | Msa0130170:intron | 10.0% |
| !! | TAAATGAGAAATTAGAGAAT+CGG | + | chr1_3:60264543-60264562 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATTGTTTGTTTT+AGG | - | chr1_3:60264562-60264581 | Msa0130170:CDS | 20.0% |
| !!! | TTTTCCAATTGTTTGTTTTA+GGG | - | chr1_3:60264563-60264582 | Msa0130170:CDS | 20.0% |
| !!! | TTAGAATTGGGAATTTTTTT+AGG | - | chr1_3:60264587-60264606 | Msa0130170:CDS | 20.0% |
| !!! | TAGAATTGGGAATTTTTTTA+GGG | - | chr1_3:60264588-60264607 | Msa0130170:CDS | 20.0% |
| !!! | TTTTTTTAGGGTTTTAGAAT+TGG | - | chr1_3:60264619-60264638 | Msa0130170:intron | 20.0% |
| !!! | TTTTTTAGGGTTTTAGAATT+GGG | - | chr1_3:60264620-60264639 | Msa0130170:intron | 20.0% |
| !!! | ATTTCTTTTAGATCAAATTG+TGG | - | chr1_3:60264963-60264982 | Msa0130170:CDS | 20.0% |
| !!! | ATTTGAACAAATATTTTTGC+AGG | + | chr1_3:60265755-60265774 | None:intergenic | 20.0% |
| !!! | AACTACCTATTTTTTGTAAT+TGG | - | chr1_3:60266115-60266134 | Msa0130170:intron | 20.0% |
| !! | AAGAACCAATTACAAAAAAT+AGG | + | chr1_3:60266123-60266142 | None:intergenic | 20.0% |
| !! | AATTACTCAAGAAAAGTTAA+AGG | - | chr1_3:60266526-60266545 | Msa0130170:five_prime_UTR | 20.0% |
| !! | TAAATGAGAAATTAGAGAAT+CGG | + | chr1_3:60264543-60264562 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATTGTTTGTTTT+AGG | - | chr1_3:60264562-60264581 | Msa0130170:CDS | 20.0% |
| !!! | TTTTCCAATTGTTTGTTTTA+GGG | - | chr1_3:60264563-60264582 | Msa0130170:CDS | 20.0% |
| !!! | TTAGAATTGGGAATTTTTTT+AGG | - | chr1_3:60264587-60264606 | Msa0130170:CDS | 20.0% |
| !!! | TAGAATTGGGAATTTTTTTA+GGG | - | chr1_3:60264588-60264607 | Msa0130170:CDS | 20.0% |
| !!! | TTTTTTTAGGGTTTTAGAAT+TGG | - | chr1_3:60264619-60264638 | Msa0130170:intron | 20.0% |
| !!! | TTTTTTAGGGTTTTAGAATT+GGG | - | chr1_3:60264620-60264639 | Msa0130170:intron | 20.0% |
| !!! | ATTTCTTTTAGATCAAATTG+TGG | - | chr1_3:60264963-60264982 | Msa0130170:CDS | 20.0% |
| !!! | ATTTGAACAAATATTTTTGC+AGG | + | chr1_3:60265755-60265774 | None:intergenic | 20.0% |
| !!! | AACTACCTATTTTTTGTAAT+TGG | - | chr1_3:60266115-60266134 | Msa0130170:intron | 20.0% |
| !! | AAGAACCAATTACAAAAAAT+AGG | + | chr1_3:60266123-60266142 | None:intergenic | 20.0% |
| !! | AATTACTCAAGAAAAGTTAA+AGG | - | chr1_3:60266526-60266545 | Msa0130170:five_prime_UTR | 20.0% |
| ! | TAAACCCTAAAACAAACAAT+TGG | + | chr1_3:60264570-60264589 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAGGGTTTAGAAT+TGG | - | chr1_3:60264574-60264593 | Msa0130170:CDS | 25.0% |
| !!! | TTGTTTTAGGGTTTAGAATT+GGG | - | chr1_3:60264575-60264594 | Msa0130170:CDS | 25.0% |
| !!! | TAGGGTCTTCAAATTTTTTT+AGG | - | chr1_3:60264606-60264625 | Msa0130170:intron | 25.0% |
| !!! | AGGGTCTTCAAATTTTTTTA+GGG | - | chr1_3:60264607-60264626 | Msa0130170:intron | 25.0% |
| !!! | TTTTTAGGGTTTTAGAATTG+GGG | - | chr1_3:60264621-60264640 | Msa0130170:intron | 25.0% |
| ! | AAACAAAACAAACAGATTCA+TGG | + | chr1_3:60264676-60264695 | None:intergenic | 25.0% |
| ! | AAAGATTTACATACAACTTC+AGG | + | chr1_3:60265124-60265143 | None:intergenic | 25.0% |
| ! | ATTATTAAGATGCAATTGCA+AGG | - | chr1_3:60265146-60265165 | Msa0130170:intron | 25.0% |
| !! | TTGGTTCAATAGTAAGATTT+TGG | - | chr1_3:60265211-60265230 | Msa0130170:intron | 25.0% |
| ! | TAGTCCCATTTATATGTTTA+AGG | - | chr1_3:60265471-60265490 | Msa0130170:five_prime_UTR | 25.0% |
| ! | ACCACCTTAAACATATAAAT+GGG | + | chr1_3:60265478-60265497 | None:intergenic | 25.0% |
| ! | AACCACCTTAAACATATAAA+TGG | + | chr1_3:60265479-60265498 | None:intergenic | 25.0% |
| !! | TTTTTCATCGCTTAAAATGA+AGG | - | chr1_3:60265513-60265532 | Msa0130170:five_prime_UTR | 25.0% |
| ! | GGCTACTATAATAACAAAAA+GGG | + | chr1_3:60265655-60265674 | None:intergenic | 25.0% |
| ! | AGGCTACTATAATAACAAAA+AGG | + | chr1_3:60265656-60265675 | None:intergenic | 25.0% |
| !!! | ATTTTATTTGAGTTGCTTGT+TGG | - | chr1_3:60265814-60265833 | Msa0130170:intron | 25.0% |
| ! | ACACAAAATTACATAATCTG+TGG | + | chr1_3:60265929-60265948 | None:intergenic | 25.0% |
| ! | TAAACCCTAAAACAAACAAT+TGG | + | chr1_3:60264570-60264589 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAGGGTTTAGAAT+TGG | - | chr1_3:60264574-60264593 | Msa0130170:CDS | 25.0% |
| !!! | TTGTTTTAGGGTTTAGAATT+GGG | - | chr1_3:60264575-60264594 | Msa0130170:CDS | 25.0% |
| !!! | TAGGGTCTTCAAATTTTTTT+AGG | - | chr1_3:60264606-60264625 | Msa0130170:intron | 25.0% |
| !!! | AGGGTCTTCAAATTTTTTTA+GGG | - | chr1_3:60264607-60264626 | Msa0130170:intron | 25.0% |
| !!! | TTTTTAGGGTTTTAGAATTG+GGG | - | chr1_3:60264621-60264640 | Msa0130170:intron | 25.0% |
| ! | AAACAAAACAAACAGATTCA+TGG | + | chr1_3:60264676-60264695 | None:intergenic | 25.0% |
| ! | AAAGATTTACATACAACTTC+AGG | + | chr1_3:60265124-60265143 | None:intergenic | 25.0% |
| ! | ATTATTAAGATGCAATTGCA+AGG | - | chr1_3:60265146-60265165 | Msa0130170:intron | 25.0% |
| !! | TTGGTTCAATAGTAAGATTT+TGG | - | chr1_3:60265211-60265230 | Msa0130170:intron | 25.0% |
| ! | TAGTCCCATTTATATGTTTA+AGG | - | chr1_3:60265471-60265490 | Msa0130170:five_prime_UTR | 25.0% |
| ! | ACCACCTTAAACATATAAAT+GGG | + | chr1_3:60265478-60265497 | None:intergenic | 25.0% |
| ! | AACCACCTTAAACATATAAA+TGG | + | chr1_3:60265479-60265498 | None:intergenic | 25.0% |
| !! | TTTTTCATCGCTTAAAATGA+AGG | - | chr1_3:60265513-60265532 | Msa0130170:five_prime_UTR | 25.0% |
| ! | GGCTACTATAATAACAAAAA+GGG | + | chr1_3:60265655-60265674 | None:intergenic | 25.0% |
| ! | AGGCTACTATAATAACAAAA+AGG | + | chr1_3:60265656-60265675 | None:intergenic | 25.0% |
| !!! | ATTTTATTTGAGTTGCTTGT+TGG | - | chr1_3:60265814-60265833 | Msa0130170:intron | 25.0% |
| ! | ACACAAAATTACATAATCTG+TGG | + | chr1_3:60265929-60265948 | None:intergenic | 25.0% |
| AAAACACAAAGATGTACTGT+GGG | + | chr1_3:60264744-60264763 | None:intergenic | 30.0% | |
| TAAAACACAAAGATGTACTG+TGG | + | chr1_3:60264745-60264764 | None:intergenic | 30.0% | |
| GAAGAGAAAAAAAAATGTCC+TGG | - | chr1_3:60264852-60264871 | Msa0130170:intron | 30.0% | |
| TCACAGTTAAAAGATATGTG+TGG | - | chr1_3:60265021-60265040 | Msa0130170:intron | 30.0% | |
| ! | ATGTGTCAAACATTTTTGCA+AGG | - | chr1_3:60265242-60265261 | Msa0130170:intron | 30.0% |
| AATCAACCGAAAAAAACACT+CGG | + | chr1_3:60265342-60265361 | None:intergenic | 30.0% | |
| TCCCATTTATATGTTTAAGG+TGG | - | chr1_3:60265474-60265493 | Msa0130170:five_prime_UTR | 30.0% | |
| ! | AAAGTTAAACCTGAGTTGAA+GGG | + | chr1_3:60265847-60265866 | None:intergenic | 30.0% |
| TTCTTAATCGTAAGATACCT+TGG | - | chr1_3:60265971-60265990 | Msa0130170:intron | 30.0% | |
| AAGCACATGATCTTATTGAT+CGG | - | chr1_3:60266022-60266041 | Msa0130170:intron | 30.0% | |
| CTGTTCTTGTCATATGTATT+AGG | - | chr1_3:60266077-60266096 | Msa0130170:intron | 30.0% | |
| CAACATTAGTATGTCAACAA+AGG | + | chr1_3:60266201-60266220 | None:intergenic | 30.0% | |
| CTTTGTTGACATACTAATGT+TGG | - | chr1_3:60266199-60266218 | Msa0130170:intron | 30.0% | |
| ! | GTCCCATATCTTGTTATATT+CGG | - | chr1_3:60266221-60266240 | Msa0130170:intron | 30.0% |
| ! | TCCCATATCTTGTTATATTC+GGG | - | chr1_3:60266222-60266241 | Msa0130170:intron | 30.0% |
| TCCCGAATATAACAAGATAT+GGG | + | chr1_3:60266226-60266245 | None:intergenic | 30.0% | |
| TTCCCGAATATAACAAGATA+TGG | + | chr1_3:60266227-60266246 | None:intergenic | 30.0% | |
| ! | TCTTGACAAAAAGAGTATGA+AGG | - | chr1_3:60266370-60266389 | Msa0130170:intron | 30.0% |
| AAAACACAAAGATGTACTGT+GGG | + | chr1_3:60264744-60264763 | None:intergenic | 30.0% | |
| TAAAACACAAAGATGTACTG+TGG | + | chr1_3:60264745-60264764 | None:intergenic | 30.0% | |
| GAAGAGAAAAAAAAATGTCC+TGG | - | chr1_3:60264852-60264871 | Msa0130170:intron | 30.0% | |
| TCACAGTTAAAAGATATGTG+TGG | - | chr1_3:60265021-60265040 | Msa0130170:intron | 30.0% | |
| ! | ATGTGTCAAACATTTTTGCA+AGG | - | chr1_3:60265242-60265261 | Msa0130170:intron | 30.0% |
| AATCAACCGAAAAAAACACT+CGG | + | chr1_3:60265342-60265361 | None:intergenic | 30.0% | |
| TCCCATTTATATGTTTAAGG+TGG | - | chr1_3:60265474-60265493 | Msa0130170:five_prime_UTR | 30.0% | |
| ! | AAAGTTAAACCTGAGTTGAA+GGG | + | chr1_3:60265847-60265866 | None:intergenic | 30.0% |
| TTCTTAATCGTAAGATACCT+TGG | - | chr1_3:60265971-60265990 | Msa0130170:intron | 30.0% | |
| AAGCACATGATCTTATTGAT+CGG | - | chr1_3:60266022-60266041 | Msa0130170:intron | 30.0% | |
| CTGTTCTTGTCATATGTATT+AGG | - | chr1_3:60266077-60266096 | Msa0130170:intron | 30.0% | |
| CAACATTAGTATGTCAACAA+AGG | + | chr1_3:60266201-60266220 | None:intergenic | 30.0% | |
| CTTTGTTGACATACTAATGT+TGG | - | chr1_3:60266199-60266218 | Msa0130170:intron | 30.0% | |
| ! | GTCCCATATCTTGTTATATT+CGG | - | chr1_3:60266221-60266240 | Msa0130170:intron | 30.0% |
| ! | TCCCATATCTTGTTATATTC+GGG | - | chr1_3:60266222-60266241 | Msa0130170:intron | 30.0% |
| TCCCGAATATAACAAGATAT+GGG | + | chr1_3:60266226-60266245 | None:intergenic | 30.0% | |
| TTCCCGAATATAACAAGATA+TGG | + | chr1_3:60266227-60266246 | None:intergenic | 30.0% | |
| ! | TCTTGACAAAAAGAGTATGA+AGG | - | chr1_3:60266370-60266389 | Msa0130170:intron | 30.0% |
| ACAGAAATACACTTCTGTGA+AGG | + | chr1_3:60264402-60264421 | None:intergenic | 35.0% | |
| TGAGAAATTAGAGAATCGGT+TGG | + | chr1_3:60264539-60264558 | None:intergenic | 35.0% | |
| AAATACGAAGAAACAGCAGA+AGG | + | chr1_3:60264808-60264827 | None:intergenic | 35.0% | |
| ! | TTTTAGACAGGGAACTTTGT+AGG | - | chr1_3:60264899-60264918 | Msa0130170:CDS | 35.0% |
| TAAGTTGTTGCCTTATGACA+GGG | + | chr1_3:60264990-60265009 | None:intergenic | 35.0% | |
| AAAGATATGTGTGGTTTACG+TGG | - | chr1_3:60265030-60265049 | Msa0130170:intron | 35.0% | |
| AAGATATGTGTGGTTTACGT+GGG | - | chr1_3:60265031-60265050 | Msa0130170:intron | 35.0% | |
| AGGAACTAATCATAGTTCTC+AGG | - | chr1_3:60265079-60265098 | Msa0130170:intron | 35.0% | |
| GGAACTAATCATAGTTCTCA+GGG | - | chr1_3:60265080-60265099 | Msa0130170:intron | 35.0% | |
| !!! | TAACAGCCGAGTGTTTTTTT+CGG | - | chr1_3:60265333-60265352 | Msa0130170:intron | 35.0% |
| ! | TTAGCTCCTGAGATACTTTT+AGG | - | chr1_3:60265430-60265449 | Msa0130170:intron | 35.0% |
| !! | ATACTTTTAGGAACTGGACA+TGG | - | chr1_3:60265442-60265461 | Msa0130170:intron | 35.0% |
| TGTAAAACCACTAAATCAGC+AGG | + | chr1_3:60265676-60265695 | None:intergenic | 35.0% | |
| ! | AAATTTTGCAGCGTATACTG+CGG | - | chr1_3:60265771-60265790 | Msa0130170:intron | 35.0% |
| ! | CAAAGTTAAACCTGAGTTGA+AGG | + | chr1_3:60265848-60265867 | None:intergenic | 35.0% |
| AGAAACACTTGAAGGATACA+TGG | + | chr1_3:60266299-60266318 | None:intergenic | 35.0% | |
| CAAGCTTAAGAAACACTTGA+AGG | + | chr1_3:60266307-60266326 | None:intergenic | 35.0% | |
| CTTCAAGTGTTTCTTAAGCT+TGG | - | chr1_3:60266305-60266324 | Msa0130170:intron | 35.0% | |
| !!! | CTTCAGCTTCTGAAATTTTG+AGG | - | chr1_3:60266498-60266517 | Msa0130170:five_prime_UTR | 35.0% |
| ACAGAAATACACTTCTGTGA+AGG | + | chr1_3:60264402-60264421 | None:intergenic | 35.0% | |
| TGAGAAATTAGAGAATCGGT+TGG | + | chr1_3:60264539-60264558 | None:intergenic | 35.0% | |
| AAATACGAAGAAACAGCAGA+AGG | + | chr1_3:60264808-60264827 | None:intergenic | 35.0% | |
| ! | TTTTAGACAGGGAACTTTGT+AGG | - | chr1_3:60264899-60264918 | Msa0130170:CDS | 35.0% |
| TAAGTTGTTGCCTTATGACA+GGG | + | chr1_3:60264990-60265009 | None:intergenic | 35.0% | |
| AAAGATATGTGTGGTTTACG+TGG | - | chr1_3:60265030-60265049 | Msa0130170:intron | 35.0% | |
| AAGATATGTGTGGTTTACGT+GGG | - | chr1_3:60265031-60265050 | Msa0130170:intron | 35.0% | |
| AGGAACTAATCATAGTTCTC+AGG | - | chr1_3:60265079-60265098 | Msa0130170:intron | 35.0% | |
| GGAACTAATCATAGTTCTCA+GGG | - | chr1_3:60265080-60265099 | Msa0130170:intron | 35.0% | |
| !!! | TAACAGCCGAGTGTTTTTTT+CGG | - | chr1_3:60265333-60265352 | Msa0130170:intron | 35.0% |
| ! | TTAGCTCCTGAGATACTTTT+AGG | - | chr1_3:60265430-60265449 | Msa0130170:intron | 35.0% |
| !! | ATACTTTTAGGAACTGGACA+TGG | - | chr1_3:60265442-60265461 | Msa0130170:intron | 35.0% |
| TGTAAAACCACTAAATCAGC+AGG | + | chr1_3:60265676-60265695 | None:intergenic | 35.0% | |
| ! | AAATTTTGCAGCGTATACTG+CGG | - | chr1_3:60265771-60265790 | Msa0130170:intron | 35.0% |
| ! | CAAAGTTAAACCTGAGTTGA+AGG | + | chr1_3:60265848-60265867 | None:intergenic | 35.0% |
| AGAAACACTTGAAGGATACA+TGG | + | chr1_3:60266299-60266318 | None:intergenic | 35.0% | |
| CAAGCTTAAGAAACACTTGA+AGG | + | chr1_3:60266307-60266326 | None:intergenic | 35.0% | |
| CTTCAAGTGTTTCTTAAGCT+TGG | - | chr1_3:60266305-60266324 | Msa0130170:intron | 35.0% | |
| !!! | CTTCAGCTTCTGAAATTTTG+AGG | - | chr1_3:60266498-60266517 | Msa0130170:five_prime_UTR | 35.0% |
| ! | ACTTCTGTGAAGGAGTACAT+CGG | + | chr1_3:60264392-60264411 | None:intergenic | 40.0% |
| ATTTGACGGAGAAACAACAG+TGG | + | chr1_3:60264464-60264483 | None:intergenic | 40.0% | |
| GAACTGAGAGAGAGAATAAG+CGG | + | chr1_3:60264492-60264511 | None:intergenic | 40.0% | |
| TTCTCAATCACCTTAAGCCA+TGG | - | chr1_3:60264509-60264528 | Msa0130170:CDS | 40.0% | |
| !!! | AGGGTTTTAGAATTGGGGAA+TGG | - | chr1_3:60264626-60264645 | Msa0130170:intron | 40.0% |
| !!! | GGGTTTTAGAATTGGGGAAT+GGG | - | chr1_3:60264627-60264646 | Msa0130170:intron | 40.0% |
| !!! | GGTTTTAGAATTGGGGAATG+GGG | - | chr1_3:60264628-60264647 | Msa0130170:intron | 40.0% |
| ! | AGTTCCCTGTCTAAAACGAT+GGG | + | chr1_3:60264895-60264914 | None:intergenic | 40.0% |
| ! | AAGTTCCCTGTCTAAAACGA+TGG | + | chr1_3:60264896-60264915 | None:intergenic | 40.0% |
| AAATTGTGGTCCCTGTCATA+AGG | - | chr1_3:60264977-60264996 | Msa0130170:intron | 40.0% | |
| GTAAGTTGTTGCCTTATGAC+AGG | + | chr1_3:60264991-60265010 | None:intergenic | 40.0% | |
| CAACACAGATGTGATTGAGA+AGG | - | chr1_3:60265059-60265078 | Msa0130170:intron | 40.0% | |
| ACCACACAGAAACATGTCAT+TGG | - | chr1_3:60265192-60265211 | Msa0130170:intron | 40.0% | |
| ! | ACCAATGACATGTTTCTGTG+TGG | + | chr1_3:60265196-60265215 | None:intergenic | 40.0% |
| ATTTAGCTACTCCACTGTCA+TGG | + | chr1_3:60265271-60265290 | None:intergenic | 40.0% | |
| CTAAATCTCAGCATGGAGAT+TGG | - | chr1_3:60265285-60265304 | Msa0130170:intron | 40.0% | |
| !! | ATTGGCTCTGCATTTGGTTT+CGG | - | chr1_3:60265303-60265322 | Msa0130170:intron | 40.0% |
| ! | TCTGCATTTGGTTTCGGTTT+GGG | - | chr1_3:60265309-60265328 | Msa0130170:intron | 40.0% |
| GATTACTTAGCTCCTGAGAA+CGG | - | chr1_3:60265358-60265377 | Msa0130170:intron | 40.0% | |
| ATCTCAGGAGCTAAGTAATC+AGG | + | chr1_3:60265424-60265443 | None:intergenic | 40.0% | |
| !! | CCAGTTCCTAAAAGTATCTC+AGG | + | chr1_3:60265439-60265458 | None:intergenic | 40.0% |
| !! | CCTGAGATACTTTTAGGAAC+TGG | - | chr1_3:60265436-60265455 | Msa0130170:intron | 40.0% |
| !! | ATAGTAGCCTGCTGATTTAG+TGG | - | chr1_3:60265666-60265685 | Msa0130170:intron | 40.0% |
| TGCTTCAAGACTCATTTCGT+CGG | + | chr1_3:60266007-60266026 | None:intergenic | 40.0% | |
| ! | GCTGTTTGTTAGTGCAGATA+TGG | - | chr1_3:60266175-60266194 | Msa0130170:intron | 40.0% |
| ! | ATGAAGGCATACTTCCATAG+AGG | - | chr1_3:60266386-60266405 | Msa0130170:intron | 40.0% |
| TCTCTCTAGTTGTACCTCTA+TGG | + | chr1_3:60266403-60266422 | None:intergenic | 40.0% | |
| AGGTACAACTAGAGAGATAC+TGG | - | chr1_3:60266406-60266425 | Msa0130170:intron | 40.0% | |
| GGTACAACTAGAGAGATACT+GGG | - | chr1_3:60266407-60266426 | Msa0130170:intron | 40.0% | |
| TACTTGAGCCAACCAACAAA+AGG | - | chr1_3:60266471-60266490 | Msa0130170:five_prime_UTR | 40.0% | |
| ACTTGAGCCAACCAACAAAA+GGG | - | chr1_3:60266472-60266491 | Msa0130170:five_prime_UTR | 40.0% | |
| ! | ACTTCTGTGAAGGAGTACAT+CGG | + | chr1_3:60264392-60264411 | None:intergenic | 40.0% |
| ATTTGACGGAGAAACAACAG+TGG | + | chr1_3:60264464-60264483 | None:intergenic | 40.0% | |
| GAACTGAGAGAGAGAATAAG+CGG | + | chr1_3:60264492-60264511 | None:intergenic | 40.0% | |
| TTCTCAATCACCTTAAGCCA+TGG | - | chr1_3:60264509-60264528 | Msa0130170:CDS | 40.0% | |
| !!! | AGGGTTTTAGAATTGGGGAA+TGG | - | chr1_3:60264626-60264645 | Msa0130170:intron | 40.0% |
| !!! | GGGTTTTAGAATTGGGGAAT+GGG | - | chr1_3:60264627-60264646 | Msa0130170:intron | 40.0% |
| !!! | GGTTTTAGAATTGGGGAATG+GGG | - | chr1_3:60264628-60264647 | Msa0130170:intron | 40.0% |
| ! | AGTTCCCTGTCTAAAACGAT+GGG | + | chr1_3:60264895-60264914 | None:intergenic | 40.0% |
| ! | AAGTTCCCTGTCTAAAACGA+TGG | + | chr1_3:60264896-60264915 | None:intergenic | 40.0% |
| AAATTGTGGTCCCTGTCATA+AGG | - | chr1_3:60264977-60264996 | Msa0130170:intron | 40.0% | |
| GTAAGTTGTTGCCTTATGAC+AGG | + | chr1_3:60264991-60265010 | None:intergenic | 40.0% | |
| CAACACAGATGTGATTGAGA+AGG | - | chr1_3:60265059-60265078 | Msa0130170:intron | 40.0% | |
| ACCACACAGAAACATGTCAT+TGG | - | chr1_3:60265192-60265211 | Msa0130170:intron | 40.0% | |
| ! | ACCAATGACATGTTTCTGTG+TGG | + | chr1_3:60265196-60265215 | None:intergenic | 40.0% |
| ATTTAGCTACTCCACTGTCA+TGG | + | chr1_3:60265271-60265290 | None:intergenic | 40.0% | |
| CTAAATCTCAGCATGGAGAT+TGG | - | chr1_3:60265285-60265304 | Msa0130170:intron | 40.0% | |
| !! | ATTGGCTCTGCATTTGGTTT+CGG | - | chr1_3:60265303-60265322 | Msa0130170:intron | 40.0% |
| ! | TCTGCATTTGGTTTCGGTTT+GGG | - | chr1_3:60265309-60265328 | Msa0130170:intron | 40.0% |
| GATTACTTAGCTCCTGAGAA+CGG | - | chr1_3:60265358-60265377 | Msa0130170:intron | 40.0% | |
| ATCTCAGGAGCTAAGTAATC+AGG | + | chr1_3:60265424-60265443 | None:intergenic | 40.0% | |
| !! | CCAGTTCCTAAAAGTATCTC+AGG | + | chr1_3:60265439-60265458 | None:intergenic | 40.0% |
| !! | CCTGAGATACTTTTAGGAAC+TGG | - | chr1_3:60265436-60265455 | Msa0130170:intron | 40.0% |
| !! | ATAGTAGCCTGCTGATTTAG+TGG | - | chr1_3:60265666-60265685 | Msa0130170:intron | 40.0% |
| TGCTTCAAGACTCATTTCGT+CGG | + | chr1_3:60266007-60266026 | None:intergenic | 40.0% | |
| ! | GCTGTTTGTTAGTGCAGATA+TGG | - | chr1_3:60266175-60266194 | Msa0130170:intron | 40.0% |
| ! | ATGAAGGCATACTTCCATAG+AGG | - | chr1_3:60266386-60266405 | Msa0130170:intron | 40.0% |
| TCTCTCTAGTTGTACCTCTA+TGG | + | chr1_3:60266403-60266422 | None:intergenic | 40.0% | |
| AGGTACAACTAGAGAGATAC+TGG | - | chr1_3:60266406-60266425 | Msa0130170:intron | 40.0% | |
| GGTACAACTAGAGAGATACT+GGG | - | chr1_3:60266407-60266426 | Msa0130170:intron | 40.0% | |
| TACTTGAGCCAACCAACAAA+AGG | - | chr1_3:60266471-60266490 | Msa0130170:five_prime_UTR | 40.0% | |
| ACTTGAGCCAACCAACAAAA+GGG | - | chr1_3:60266472-60266491 | Msa0130170:five_prime_UTR | 40.0% | |
| ! | CTTCTGTGAAGGAGTACATC+GGG | + | chr1_3:60264391-60264410 | None:intergenic | 45.0% |
| AATAAGCGGCTGCGATTTGA+CGG | + | chr1_3:60264478-60264497 | None:intergenic | 45.0% | |
| CAAAGATGTACTGTGGGAGA+AGG | + | chr1_3:60264738-60264757 | None:intergenic | 45.0% | |
| ! | GTTCCCTGTCTAAAACGATG+GGG | + | chr1_3:60264894-60264913 | None:intergenic | 45.0% |
| GGAGTAGCTAAATCTCAGCA+TGG | - | chr1_3:60265278-60265297 | Msa0130170:intron | 45.0% | |
| !! | ATGGAGATTGGCTCTGCATT+TGG | - | chr1_3:60265297-60265316 | Msa0130170:intron | 45.0% |
| ! | CTCTGCATTTGGTTTCGGTT+TGG | - | chr1_3:60265308-60265327 | Msa0130170:intron | 45.0% |
| ! | GTTAAACCTGAGTTGAAGGG+TGG | + | chr1_3:60265844-60265863 | None:intergenic | 45.0% |
| GCTTCAAGACTCATTTCGTC+GGG | + | chr1_3:60266006-60266025 | None:intergenic | 45.0% | |
| GAATGCCTTTGACATCTTGG+TGG | - | chr1_3:60266244-60266263 | Msa0130170:intron | 45.0% | |
| GATCACCACCAAGATGTCAA+AGG | + | chr1_3:60266252-60266271 | None:intergenic | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | + | chr1_3:60266340-60266359 | None:intergenic | 45.0% | |
| ! | GTTGGTTGGCTCAAGTACAA+GGG | + | chr1_3:60266468-60266487 | None:intergenic | 45.0% |
| ! | TGTTGGTTGGCTCAAGTACA+AGG | + | chr1_3:60266469-60266488 | None:intergenic | 45.0% |
| ! | CTTCTGTGAAGGAGTACATC+GGG | + | chr1_3:60264391-60264410 | None:intergenic | 45.0% |
| AATAAGCGGCTGCGATTTGA+CGG | + | chr1_3:60264478-60264497 | None:intergenic | 45.0% | |
| CAAAGATGTACTGTGGGAGA+AGG | + | chr1_3:60264738-60264757 | None:intergenic | 45.0% | |
| ! | GTTCCCTGTCTAAAACGATG+GGG | + | chr1_3:60264894-60264913 | None:intergenic | 45.0% |
| GGAGTAGCTAAATCTCAGCA+TGG | - | chr1_3:60265278-60265297 | Msa0130170:intron | 45.0% | |
| !! | ATGGAGATTGGCTCTGCATT+TGG | - | chr1_3:60265297-60265316 | Msa0130170:intron | 45.0% |
| ! | CTCTGCATTTGGTTTCGGTT+TGG | - | chr1_3:60265308-60265327 | Msa0130170:intron | 45.0% |
| ! | GTTAAACCTGAGTTGAAGGG+TGG | + | chr1_3:60265844-60265863 | None:intergenic | 45.0% |
| GCTTCAAGACTCATTTCGTC+GGG | + | chr1_3:60266006-60266025 | None:intergenic | 45.0% | |
| GAATGCCTTTGACATCTTGG+TGG | - | chr1_3:60266244-60266263 | Msa0130170:intron | 45.0% | |
| GATCACCACCAAGATGTCAA+AGG | + | chr1_3:60266252-60266271 | None:intergenic | 45.0% | |
| TTGTACAATCTGCCTCAGCT+TGG | + | chr1_3:60266340-60266359 | None:intergenic | 45.0% | |
| ! | GTTGGTTGGCTCAAGTACAA+GGG | + | chr1_3:60266468-60266487 | None:intergenic | 45.0% |
| ! | TGTTGGTTGGCTCAAGTACA+AGG | + | chr1_3:60266469-60266488 | None:intergenic | 45.0% |
| GAAACAACAGTGGCGAACAG+AGG | + | chr1_3:60264454-60264473 | None:intergenic | 50.0% | |
| !! | GGTTGGCTTACCATGGCTTA+AGG | + | chr1_3:60264522-60264541 | None:intergenic | 50.0% |
| !! | GAGAATCGGTTGGCTTACCA+TGG | + | chr1_3:60264529-60264548 | None:intergenic | 50.0% |
| !! | ACTGCCCCATCGTTTTAGAC+AGG | - | chr1_3:60264887-60264906 | Msa0130170:intron | 50.0% |
| !! | CTGCCCCATCGTTTTAGACA+GGG | - | chr1_3:60264888-60264907 | Msa0130170:intron | 50.0% |
| TTGCAAGGCTACCATGACAG+TGG | - | chr1_3:60265257-60265276 | Msa0130170:intron | 50.0% | |
| TACTTAGCTCCTGAGAACGG+AGG | - | chr1_3:60265361-60265380 | Msa0130170:intron | 50.0% | |
| GTAATCAGGTGTGCCAACAG+CGG | + | chr1_3:60265410-60265429 | None:intergenic | 50.0% | |
| TTGCAGCGTATACTGCGGAT+TGG | - | chr1_3:60265776-60265795 | Msa0130170:intron | 50.0% | |
| GGTATTCCACCCTTCAACTC+AGG | - | chr1_3:60265835-60265854 | Msa0130170:intron | 50.0% | |
| CTCATTTCGTCGGGAACTTC+AGG | + | chr1_3:60265997-60266016 | None:intergenic | 50.0% | |
| CGGGAATGCCTTTGACATCT+TGG | - | chr1_3:60266241-60266260 | Msa0130170:intron | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | - | chr1_3:60266325-60266344 | Msa0130170:intron | 50.0% | |
| ! | GAAGCAGCCCTTTTGTTGGT+TGG | + | chr1_3:60266482-60266501 | None:intergenic | 50.0% |
| ! | AGCTGAAGCAGCCCTTTTGT+TGG | + | chr1_3:60266486-60266505 | None:intergenic | 50.0% |
| GAAACAACAGTGGCGAACAG+AGG | + | chr1_3:60264454-60264473 | None:intergenic | 50.0% | |
| !! | GGTTGGCTTACCATGGCTTA+AGG | + | chr1_3:60264522-60264541 | None:intergenic | 50.0% |
| !! | GAGAATCGGTTGGCTTACCA+TGG | + | chr1_3:60264529-60264548 | None:intergenic | 50.0% |
| !! | ACTGCCCCATCGTTTTAGAC+AGG | - | chr1_3:60264887-60264906 | Msa0130170:intron | 50.0% |
| !! | CTGCCCCATCGTTTTAGACA+GGG | - | chr1_3:60264888-60264907 | Msa0130170:intron | 50.0% |
| TTGCAAGGCTACCATGACAG+TGG | - | chr1_3:60265257-60265276 | Msa0130170:intron | 50.0% | |
| TACTTAGCTCCTGAGAACGG+AGG | - | chr1_3:60265361-60265380 | Msa0130170:intron | 50.0% | |
| GTAATCAGGTGTGCCAACAG+CGG | + | chr1_3:60265410-60265429 | None:intergenic | 50.0% | |
| TTGCAGCGTATACTGCGGAT+TGG | - | chr1_3:60265776-60265795 | Msa0130170:intron | 50.0% | |
| GGTATTCCACCCTTCAACTC+AGG | - | chr1_3:60265835-60265854 | Msa0130170:intron | 50.0% | |
| CTCATTTCGTCGGGAACTTC+AGG | + | chr1_3:60265997-60266016 | None:intergenic | 50.0% | |
| CGGGAATGCCTTTGACATCT+TGG | - | chr1_3:60266241-60266260 | Msa0130170:intron | 50.0% | |
| TGGCAGTTATCTCCAAGCTG+AGG | - | chr1_3:60266325-60266344 | Msa0130170:intron | 50.0% | |
| ! | GAAGCAGCCCTTTTGTTGGT+TGG | + | chr1_3:60266482-60266501 | None:intergenic | 50.0% |
| ! | AGCTGAAGCAGCCCTTTTGT+TGG | + | chr1_3:60266486-60266505 | None:intergenic | 50.0% |
| ! | TGTGAAGGAGTACATCGGGC+TGG | + | chr1_3:60264387-60264406 | None:intergenic | 55.0% |
| ! | GGCAGTCTTGTACTCAAGCC+AGG | + | chr1_3:60264873-60264892 | None:intergenic | 55.0% |
| TAGCTCCTGAGAACGGAGGA+AGG | - | chr1_3:60265365-60265384 | Msa0130170:intron | 55.0% | |
| AGCTCCTGAGAACGGAGGAA+GGG | - | chr1_3:60265366-60265385 | Msa0130170:intron | 55.0% | |
| CTGAGAACGGAGGAAGGGAA+CGG | - | chr1_3:60265371-60265390 | Msa0130170:intron | 55.0% | |
| !! | AGGAAGAAGCGTTCCGCTGT+TGG | - | chr1_3:60265394-60265413 | Msa0130170:intron | 55.0% |
| !! | CAGCGTATACTGCGGATTGG+TGG | - | chr1_3:60265779-60265798 | Msa0130170:intron | 55.0% |
| !! | ACTGCGGATTGGTGGTCTGT+TGG | - | chr1_3:60265787-60265806 | Msa0130170:intron | 55.0% |
| !! | CTGCGGATTGGTGGTCTGTT+GGG | - | chr1_3:60265788-60265807 | Msa0130170:intron | 55.0% |
| !! | TGCGGATTGGTGGTCTGTTG+GGG | - | chr1_3:60265789-60265808 | Msa0130170:intron | 55.0% |
| ! | TGTGAAGGAGTACATCGGGC+TGG | + | chr1_3:60264387-60264406 | None:intergenic | 55.0% |
| ! | GGCAGTCTTGTACTCAAGCC+AGG | + | chr1_3:60264873-60264892 | None:intergenic | 55.0% |
| TAGCTCCTGAGAACGGAGGA+AGG | - | chr1_3:60265365-60265384 | Msa0130170:intron | 55.0% | |
| AGCTCCTGAGAACGGAGGAA+GGG | - | chr1_3:60265366-60265385 | Msa0130170:intron | 55.0% | |
| CTGAGAACGGAGGAAGGGAA+CGG | - | chr1_3:60265371-60265390 | Msa0130170:intron | 55.0% | |
| !! | AGGAAGAAGCGTTCCGCTGT+TGG | - | chr1_3:60265394-60265413 | Msa0130170:intron | 55.0% |
| !! | CAGCGTATACTGCGGATTGG+TGG | - | chr1_3:60265779-60265798 | Msa0130170:intron | 55.0% |
| !! | ACTGCGGATTGGTGGTCTGT+TGG | - | chr1_3:60265787-60265806 | Msa0130170:intron | 55.0% |
| !! | CTGCGGATTGGTGGTCTGTT+GGG | - | chr1_3:60265788-60265807 | Msa0130170:intron | 55.0% |
| !! | TGCGGATTGGTGGTCTGTTG+GGG | - | chr1_3:60265789-60265808 | Msa0130170:intron | 55.0% |
| CGTTCCCTTCCTCCGTTCTC+AGG | + | chr1_3:60265373-60265392 | None:intergenic | 60.0% | |
| AGAACGGAGGAAGGGAACGG+AGG | - | chr1_3:60265374-60265393 | Msa0130170:intron | 60.0% | |
| TCGTCGGGAACTTCAGGCCA+AGG | + | chr1_3:60265991-60266010 | None:intergenic | 60.0% | |
| CGTTCCCTTCCTCCGTTCTC+AGG | + | chr1_3:60265373-60265392 | None:intergenic | 60.0% | |
| AGAACGGAGGAAGGGAACGG+AGG | - | chr1_3:60265374-60265393 | Msa0130170:intron | 60.0% | |
| TCGTCGGGAACTTCAGGCCA+AGG | + | chr1_3:60265991-60266010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60264375 | 60266565 | 60264375 | ID=Msa0130170;Name=Msa0130170 |
| chr1_3 | mRNA | 60264375 | 60266565 | 60264375 | ID=Msa0130170-mRNA-1;Parent=Msa0130170;Name=Msa0130170-mRNA-1;_AED=0.21;_eAED=0.21;_QI=376|0.75|0.8|1|0.75|0.8|5|0|135 |
| chr1_3 | exon | 60264375 | 60264609 | 60264375 | ID=Msa0130170-mRNA-1:exon:19845;Parent=Msa0130170-mRNA-1 |
| chr1_3 | exon | 60264897 | 60264985 | 60264897 | ID=Msa0130170-mRNA-1:exon:19844;Parent=Msa0130170-mRNA-1 |
| chr1_3 | exon | 60265084 | 60265158 | 60265084 | ID=Msa0130170-mRNA-1:exon:19843;Parent=Msa0130170-mRNA-1 |
| chr1_3 | exon | 60265448 | 60265676 | 60265448 | ID=Msa0130170-mRNA-1:exon:19842;Parent=Msa0130170-mRNA-1 |
| chr1_3 | exon | 60266410 | 60266565 | 60266410 | ID=Msa0130170-mRNA-1:exon:19841;Parent=Msa0130170-mRNA-1 |
| chr1_3 | five_prime_UTR | 60266410 | 60266565 | 60266410 | ID=Msa0130170-mRNA-1:five_prime_utr;Parent=Msa0130170-mRNA-1 |
| chr1_3 | five_prime_UTR | 60265457 | 60265676 | 60265457 | ID=Msa0130170-mRNA-1:five_prime_utr;Parent=Msa0130170-mRNA-1 |
| chr1_3 | CDS | 60265448 | 60265456 | 60265448 | ID=Msa0130170-mRNA-1:cds;Parent=Msa0130170-mRNA-1 |
| chr1_3 | CDS | 60265084 | 60265158 | 60265084 | ID=Msa0130170-mRNA-1:cds;Parent=Msa0130170-mRNA-1 |
| chr1_3 | CDS | 60264897 | 60264985 | 60264897 | ID=Msa0130170-mRNA-1:cds;Parent=Msa0130170-mRNA-1 |
| chr1_3 | CDS | 60264375 | 60264609 | 60264375 | ID=Msa0130170-mRNA-1:cds;Parent=Msa0130170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
