AlfalfaGEDB | Msa1006660

M. sativa cultivar zhongmu-4 / Msa1006660

KEGG: K01426
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805
PFAM: PF07719.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006660	XP_024641998.1	95.312	64	3	0	68	131	1058	1121	1.34e-31	133

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006660	sp\|Q9MUK5\|TOC64_PEA	72.603	73	20	0	151	223	519	591	7.07e-27	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006660	G7JT73	79.452	73	15	0	155	227	79	151	3.45e-31	122

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1006660	0.817412	3.341728e-52	-8.615850e-47
Msa0006070	Msa1006660	0.806876	6.648048e-50	-8.615850e-47
Msa0015610	Msa1006660	0.805237	1.470521e-49	-8.615850e-47
Msa0017510	Msa1006660	0.810870	9.296371e-51	-8.615850e-47
Msa0020420	Msa1006660	0.804667	1.935296e-49	-8.615850e-47
Msa0031710	Msa1006660	0.806258	8.978703e-50	-8.615850e-47
Msa0039330	Msa1006660	0.811490	6.820850e-51	-8.615850e-47
Msa0044260	Msa1006660	0.820090	8.239896e-53	-8.615850e-47
Msa0068680	Msa1006660	0.802646	5.081561e-49	-8.615850e-47
Msa0074700	Msa1006660	0.807338	5.307880e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006660	MtrunA17_Chr6g0478601	65.625	96	27	3	68	163	292	381	5.38e-31	119
Msa1006660	MtrunA17_Chr8g0393041	79.452	73	15	0	151	223	521	593	5.93e-31	119
Msa1006660	MtrunA17_Chr4g0018201	40.000	110	60	1	51	160	922	1025	1.46e-19	87.4
Msa1006660	MtrunA17_Chr5g0428981	40.000	110	60	1	51	160	926	1029	2.49e-19	86.7
Msa1006660	MtrunA17_Chr4g0050371	59.375	64	26	0	162	225	541	604	2.67e-16	77.4
Msa1006660	MtrunA17_Chr7g0217071	68.000	50	16	0	1	50	1	50	9.46e-16	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006660	AT3G17850.1	60.825	97	22	3	69	160	1064	1149	1.26e-27	111
Msa1006660	AT1G48490.3	55.682	88	33	1	73	160	1008	1089	9.85e-22	94.0
Msa1006660	AT1G48490.2	55.682	88	33	1	73	160	1008	1089	9.85e-22	94.0
Msa1006660	AT1G48490.1	55.682	88	33	1	73	160	1008	1089	9.85e-22	94.0
Msa1006660	AT1G48490.4	55.682	88	33	1	73	160	1009	1090	1.01e-21	94.0
Msa1006660	AT5G62310.1	47.872	94	43	1	67	160	934	1021	1.04e-21	94.0
Msa1006660	AT3G17970.1	64.615	65	23	0	159	223	524	588	2.53e-20	89.7
Msa1006660	AT1G45160.2	41.844	141	69	4	69	202	848	982	3.75e-19	86.7
Msa1006660	AT1G45160.1	41.844	141	69	4	69	202	848	982	4.39e-19	86.3
Msa1006660	AT5G09420.1	57.576	66	28	0	159	224	538	603	9.47e-16	76.3

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Find 50 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAAACCTGAGTTGAA+GGG	0.612794	7_1:+5446834	None:intergenic
AACCACCTTAAACATATAAA+TGG	0.168104	7_1:+5447202	None:intergenic
AACTAAAACAATCATGTTAT+TGG	0.192505	7_1:-5450425	Msa1006660:CDS
AAGCACATGATCTTATTGAT+CGG	0.593041	7_1:-5446656	Msa1006660:intron
AATTACTCAAGAAAAGTTGA+AGG	0.472676	7_1:-5446152	Msa1006660:CDS
ACAATCATGTTATTGGGAAA+TGG	0.389994	7_1:-5450418	Msa1006660:CDS
ACCACCTTAAACATATAAAT+GGG	0.471103	7_1:+5447203	None:intergenic
ACTAAAACAATCATGTTATT+GGG	0.383181	7_1:-5450424	Msa1006660:CDS
ACTGCGGATTGGTGGTCTGT+TGG	0.420353	7_1:-5446891	Msa1006660:CDS
ACTTGAGCCAACCAACAAAA+GGG	0.575182	7_1:-5446206	Msa1006660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATCATGTTATTGGGAAA+TGG	-	chr7_1:5446291-5446310	Msa1006660:CDS	30.0%
ACTACAAGAATTCCCAATTA+GGG	-	chr7_1:5446954-5446973	Msa1006660:intron	30.0%
ATATCCAACCGGTTAAAATT+CGG	-	chr7_1:5447089-5447108	Msa1006660:intron	30.0%
AGTTTATGAAAATGGCCAAA+TGG	+	chr7_1:5447128-5447147	None:intergenic	30.0%
AACTGGTTGTACTTAAAAAC+CGG	-	chr7_1:5447764-5447783	Msa1006660:intron	30.0%
CCAAAACCAAAACCAAATAT+TGG	+	chr7_1:5447825-5447844	None:intergenic	30.0%
GTTAGTAATATTGGGAATAG+GGG	+	chr7_1:5447868-5447887	None:intergenic	30.0%
GGTTAGTAATATTGGGAATA+GGG	+	chr7_1:5447869-5447888	None:intergenic	30.0%
TGGTTAGTAATATTGGGAAT+AGG	+	chr7_1:5447870-5447889	None:intergenic	30.0%
ATCCGTTATACTATTACTGT+CGG	+	chr7_1:5448099-5448118	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	5446135	5450596	5446135	ID=Msa1006660;Name=Msa1006660
chr7_1	mRNA	5446135	5450596	5446135	ID=Msa1006660-mRNA-1;Parent=Msa1006660;Name=Msa1006660-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0.5\|0.4\|1\|0.75\|0.6\|5\|0\|235
chr7_1	exon	5450413	5450596	5450413	ID=Msa1006660-mRNA-1:exon:1778;Parent=Msa1006660-mRNA-1
chr7_1	exon	5447208	5447332	5447208	ID=Msa1006660-mRNA-1:exon:1777;Parent=Msa1006660-mRNA-1
chr7_1	exon	5446844	5446918	5446844	ID=Msa1006660-mRNA-1:exon:1776;Parent=Msa1006660-mRNA-1
chr7_1	exon	5446657	5446745	5446657	ID=Msa1006660-mRNA-1:exon:1775;Parent=Msa1006660-mRNA-1
chr7_1	exon	5446135	5446369	5446135	ID=Msa1006660-mRNA-1:exon:1774;Parent=Msa1006660-mRNA-1
chr7_1	CDS	5450413	5450596	5450413	ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1
chr7_1	CDS	5447208	5447332	5447208	ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1
chr7_1	CDS	5446844	5446918	5446844	ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1
chr7_1	CDS	5446657	5446745	5446657	ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1
chr7_1	CDS	5446135	5446369	5446135	ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1

Gene Sequence

>Msa1006660

ATGAGTTGCTGCACTGAAATTCCACTCAAAGGAATGCTTAATGGTGTAAGATCTGTGACAAAACTCTTCGACACACACTTCATTTCTGGTCGAGAGCGAGGGTTGACATTTAAGCAAGCAAATGCGACTACGGCAACACGAATTATGTCAACTAAAACAATCATGTTATTGGGAAATGGAAGACCTCCTGAGAACGGAGGAAGGGAACGGAGGAAGAAGCGTTCCGCTGTTGGCACACCTGATTACTTAGCTCCTGAGATACTTTTAGGAACTGGACATGGTTCGTATAGTCCCATTTATATGTTTAAGCGTATACTGCGGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTCAACTCAGACTATATTTGATAATATTCTTAATCGTAAGATACCTTGGCCTGAAGTTCCCGACGAAATGAGTCTTGAAGCACATGATCTTATTGATCGTTATCTTCAAGCTGAGGCAGATTGTACAAAATCAATAAGTCTTGACAAAAAGAGTATGAAGGCATACTTCCATAGAGGTACAACTAGAGAGATACTGGGCTACTACAAAGAAGCAATTGATGATTTTAAATATGCCCTTGTACTTGAGCCAACCAACAAAAGGGCTGCTTCAGCTTCTGAAATATTGAGGAATCTAATTACTCAAGAAAAGTTGAAGGATTTGCAAGAATTTTGA

Protein sequence

>Msa1006660

MSCCTEIPLKGMLNGVRSVTKLFDTHFISGRERGLTFKQANATTATRIMSTKTIMLLGNGRPPENGGRERRKKRSAVGTPDYLAPEILLGTGHGSYSPIYMFKRILRIGGLLGSFYLSCLLVFHPSTQTIFDNILNRKIPWPEVPDEMSLEAHDLIDRYLQAEADCTKSISLDKKSMKAYFHRGTTREILGYYKEAIDDFKYALVLEPTNKRAASASEILRNLITQEKLKDLQEF*