Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006660 | XP_024641998.1 | 95.312 | 64 | 3 | 0 | 68 | 131 | 1058 | 1121 | 1.34e-31 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006660 | sp|Q9MUK5|TOC64_PEA | 72.603 | 73 | 20 | 0 | 151 | 223 | 519 | 591 | 7.07e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006660 | G7JT73 | 79.452 | 73 | 15 | 0 | 155 | 227 | 79 | 151 | 3.45e-31 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1006660 | 0.817412 | 3.341728e-52 | -8.615850e-47 |
| Msa0006070 | Msa1006660 | 0.806876 | 6.648048e-50 | -8.615850e-47 |
| Msa0015610 | Msa1006660 | 0.805237 | 1.470521e-49 | -8.615850e-47 |
| Msa0017510 | Msa1006660 | 0.810870 | 9.296371e-51 | -8.615850e-47 |
| Msa0020420 | Msa1006660 | 0.804667 | 1.935296e-49 | -8.615850e-47 |
| Msa0031710 | Msa1006660 | 0.806258 | 8.978703e-50 | -8.615850e-47 |
| Msa0039330 | Msa1006660 | 0.811490 | 6.820850e-51 | -8.615850e-47 |
| Msa0044260 | Msa1006660 | 0.820090 | 8.239896e-53 | -8.615850e-47 |
| Msa0068680 | Msa1006660 | 0.802646 | 5.081561e-49 | -8.615850e-47 |
| Msa0074700 | Msa1006660 | 0.807338 | 5.307880e-50 | -8.615850e-47 |
| Msa0078900 | Msa1006660 | 0.802791 | 4.743567e-49 | -8.615850e-47 |
| Msa0079070 | Msa1006660 | 0.802179 | 6.343196e-49 | -8.615850e-47 |
| Msa0083280 | Msa1006660 | 0.811133 | 8.151732e-51 | -8.615850e-47 |
| Msa0084380 | Msa1006660 | 0.800781 | 1.226733e-48 | -8.615850e-47 |
| Msa0114060 | Msa1006660 | 0.830480 | 2.868125e-55 | -8.615850e-47 |
| Msa0607050 | Msa1006660 | 0.823670 | 1.222513e-53 | -8.615850e-47 |
| Msa0608160 | Msa1006660 | 0.817994 | 2.470279e-52 | -8.615850e-47 |
| Msa0644140 | Msa1006660 | 0.820788 | 5.701476e-53 | -8.615850e-47 |
| Msa0648080 | Msa1006660 | 0.825086 | 5.678448e-54 | -8.615850e-47 |
| Msa0652940 | Msa1006660 | 0.847357 | 1.216852e-59 | -8.615850e-47 |
| Msa0661190 | Msa1006660 | -0.829436 | 5.154763e-55 | -8.615850e-47 |
| Msa0669440 | Msa1006660 | 0.805470 | 1.314119e-49 | -8.615850e-47 |
| Msa0672690 | Msa1006660 | 0.816652 | 4.951574e-52 | -8.615850e-47 |
| Msa0673460 | Msa1006660 | 0.818795 | 1.626860e-52 | -8.615850e-47 |
| Msa0690860 | Msa1006660 | 0.819853 | 9.335244e-53 | -8.615850e-47 |
| Msa0709400 | Msa1006660 | 0.802286 | 6.029733e-49 | -8.615850e-47 |
| Msa0731940 | Msa1006660 | 0.800572 | 1.353652e-48 | -8.615850e-47 |
| Msa0740510 | Msa1006660 | 0.819586 | 1.074636e-52 | -8.615850e-47 |
| Msa0745790 | Msa1006660 | 0.811420 | 7.063435e-51 | -8.615850e-47 |
| Msa0760130 | Msa1006660 | 0.817619 | 3.002069e-52 | -8.615850e-47 |
| Msa0766630 | Msa1006660 | 0.821396 | 4.128774e-53 | -8.615850e-47 |
| Msa0796700 | Msa1006660 | 0.822018 | 2.965402e-53 | -8.615850e-47 |
| Msa0802830 | Msa1006660 | 0.855407 | 6.440410e-62 | -8.615850e-47 |
| Msa0806660 | Msa1006660 | 0.801220 | 9.978871e-49 | -8.615850e-47 |
| Msa0820770 | Msa1006660 | 0.827288 | 1.699153e-54 | -8.615850e-47 |
| Msa0820850 | Msa1006660 | 0.820462 | 6.772285e-53 | -8.615850e-47 |
| Msa0832340 | Msa1006660 | 0.805164 | 1.523310e-49 | -8.615850e-47 |
| Msa0127650 | Msa1006660 | 0.819475 | 1.139044e-52 | -8.615850e-47 |
| Msa0130170 | Msa1006660 | 0.828906 | 6.927881e-55 | -8.615850e-47 |
| Msa0157290 | Msa1006660 | 0.810610 | 1.058259e-50 | -8.615850e-47 |
| Msa0166870 | Msa1006660 | 0.815613 | 8.451990e-52 | -8.615850e-47 |
| Msa0169860 | Msa1006660 | 0.801570 | 8.461419e-49 | -8.615850e-47 |
| Msa0171540 | Msa1006660 | 0.801017 | 1.098056e-48 | -8.615850e-47 |
| Msa0180500 | Msa1006660 | 0.815494 | 8.983965e-52 | -8.615850e-47 |
| Msa0208090 | Msa1006660 | 0.815828 | 7.570200e-52 | -8.615850e-47 |
| Msa0220580 | Msa1006660 | 0.820103 | 8.184450e-53 | -8.615850e-47 |
| Msa0220740 | Msa1006660 | 0.811284 | 7.559547e-51 | -8.615850e-47 |
| Msa0222620 | Msa1006660 | 0.800590 | 1.342289e-48 | -8.615850e-47 |
| Msa0223010 | Msa1006660 | 0.814383 | 1.584608e-51 | -8.615850e-47 |
| Msa0379640 | Msa1006660 | 0.820850 | 5.516162e-53 | -8.615850e-47 |
| Msa0390400 | Msa1006660 | -0.831834 | 1.333483e-55 | -8.615850e-47 |
| Msa0393080 | Msa1006660 | 0.804844 | 1.777410e-49 | -8.615850e-47 |
| Msa0402290 | Msa1006660 | 0.802895 | 4.514944e-49 | -8.615850e-47 |
| Msa0436760 | Msa1006660 | 0.806795 | 6.916031e-50 | -8.615850e-47 |
| Msa0440750 | Msa1006660 | 0.829656 | 4.556458e-55 | -8.615850e-47 |
| Msa0442200 | Msa1006660 | 0.805518 | 1.284362e-49 | -8.615850e-47 |
| Msa0444190 | Msa1006660 | 0.830465 | 2.891929e-55 | -8.615850e-47 |
| Msa0444750 | Msa1006660 | -0.806414 | 8.320496e-50 | -8.615850e-47 |
| Msa0453330 | Msa1006660 | 0.818781 | 1.638333e-52 | -8.615850e-47 |
| Msa0466120 | Msa1006660 | 0.812062 | 5.120216e-51 | -8.615850e-47 |
| Msa0479660 | Msa1006660 | 0.828197 | 1.027856e-54 | -8.615850e-47 |
| Msa0993290 | Msa1006660 | 0.801435 | 9.018747e-49 | -8.615850e-47 |
| Msa1000900 | Msa1006660 | 0.800703 | 1.272545e-48 | -8.615850e-47 |
| Msa1002850 | Msa1006660 | 0.801640 | 8.184262e-49 | -8.615850e-47 |
| Msa1006660 | Msa1014540 | 0.845387 | 4.193217e-59 | -8.615850e-47 |
| Msa1006660 | Msa1028970 | 0.807871 | 4.090703e-50 | -8.615850e-47 |
| Msa1006660 | Msa1030970 | 0.803693 | 3.085705e-49 | -8.615850e-47 |
| Msa1006660 | Msa1034150 | 0.801363 | 9.327693e-49 | -8.615850e-47 |
| Msa1006660 | Msa1034300 | 0.818640 | 1.764282e-52 | -8.615850e-47 |
| Msa1006660 | Msa1075540 | 0.824277 | 8.808466e-54 | -8.615850e-47 |
| Msa1006660 | Msa1075650 | 0.800755 | 1.242064e-48 | -8.615850e-47 |
| Msa1006660 | Msa1082500 | 0.807301 | 5.404370e-50 | -8.615850e-47 |
| Msa1006660 | Msa1083840 | 0.819836 | 9.423763e-53 | -8.615850e-47 |
| Msa1006660 | Msa1090260 | 0.802240 | 6.161284e-49 | -8.615850e-47 |
| Msa1006660 | Msa1104090 | 0.801394 | 9.193274e-49 | -8.615850e-47 |
| Msa1006660 | Msa1124960 | 0.803277 | 3.765004e-49 | -8.615850e-47 |
| Msa1006660 | Msa1131220 | 0.811074 | 8.395901e-51 | -8.615850e-47 |
| Msa1006660 | Msa1139000 | -0.801738 | 7.815802e-49 | -8.615850e-47 |
| Msa1006660 | Msa1154280 | 0.810035 | 1.407949e-50 | -8.615850e-47 |
| Msa1006660 | Msa1162550 | -0.820261 | 7.529349e-53 | -8.615850e-47 |
| Msa1006660 | Msa1163090 | 0.800713 | 1.266595e-48 | -8.615850e-47 |
| Msa1006660 | Msa1174040 | 0.828156 | 1.051388e-54 | -8.615850e-47 |
| Msa1006660 | Msa1195190 | 0.819119 | 1.373061e-52 | -8.615850e-47 |
| Msa1006660 | Msa1204530 | 0.817147 | 3.833759e-52 | -8.615850e-47 |
| Msa1006660 | Msa1205130 | 0.824929 | 6.185399e-54 | -8.615850e-47 |
| Msa1006660 | Msa1225130 | 0.808248 | 3.399099e-50 | -8.615850e-47 |
| Msa1006660 | Msa1228590 | 0.841771 | 3.881552e-58 | -8.615850e-47 |
| Msa1006660 | Msa1244250 | 0.805158 | 1.527844e-49 | -8.615850e-47 |
| Msa1006660 | Msa1246510 | 0.813525 | 2.449655e-51 | -8.615850e-47 |
| Msa1006660 | Msa1249490 | 0.828569 | 8.358687e-55 | -8.615850e-47 |
| Msa1006660 | Msa1250890 | 0.802308 | 5.967741e-49 | -8.615850e-47 |
| Msa1006660 | Msa1253020 | 0.813228 | 2.846857e-51 | -8.615850e-47 |
| Msa1006660 | Msa1259590 | -0.801649 | 8.151487e-49 | -8.615850e-47 |
| Msa1006660 | Msa1277660 | 0.805475 | 1.311153e-49 | -8.615850e-47 |
| Msa1006660 | Msa1284680 | 0.813639 | 2.311289e-51 | -8.615850e-47 |
| Msa1006660 | Msa1296760 | 0.814331 | 1.627000e-51 | -8.615850e-47 |
| Msa1006660 | Msa1305340 | 0.815194 | 1.047636e-51 | -8.615850e-47 |
| Msa1006660 | Msa1306840 | 0.800823 | 1.203063e-48 | -8.615850e-47 |
| Msa1006660 | Msa1331000 | 0.829789 | 4.228942e-55 | -8.615850e-47 |
| Msa1006660 | Msa1331320 | 0.801231 | 9.929116e-49 | -8.615850e-47 |
| Msa1006660 | Msa1344130 | 0.802516 | 5.407236e-49 | -8.615850e-47 |
| Msa1006660 | Msa1373030 | 0.808555 | 2.923506e-50 | -8.615850e-47 |
| Msa1006660 | Msa1374470 | 0.811327 | 7.401140e-51 | -8.615850e-47 |
| Msa1006660 | Msa1390050 | 0.825437 | 4.690935e-54 | -8.615850e-47 |
| Msa1006660 | Msa1403340 | 0.816919 | 4.315045e-52 | -8.615850e-47 |
| Msa1006660 | Msa1411020 | 0.806259 | 8.970359e-50 | -8.615850e-47 |
| Msa1006660 | Msa1420490 | 0.827140 | 1.844257e-54 | -8.615850e-47 |
| Msa1006660 | Msa1420820 | 0.835739 | 1.408268e-56 | -8.615850e-47 |
| Msa1006660 | Msa1423390 | 0.825584 | 4.329597e-54 | -8.615850e-47 |
| Msa1006660 | Msa1426470 | 0.805512 | 1.287861e-49 | -8.615850e-47 |
| Msa1006660 | Msa1427230 | 0.816628 | 5.013879e-52 | -8.615850e-47 |
| Msa1006660 | Msa1430680 | 0.802378 | 5.772389e-49 | -8.615850e-47 |
| Msa1006660 | Msa1440370 | 0.822925 | 1.824430e-53 | -8.615850e-47 |
| Msa1006660 | Msa1440810 | 0.824348 | 8.473255e-54 | -8.615850e-47 |
| Msa1006660 | Msa1452240 | 0.848202 | 7.122019e-60 | -8.615850e-47 |
| Msa1006660 | Msa1460830 | 0.818932 | 1.514219e-52 | -8.615850e-47 |
| Msa1006660 | Msa1466540 | 0.820997 | 5.103568e-53 | -8.615850e-47 |
| Msa0280090 | Msa1006660 | 0.820682 | 6.029909e-53 | -8.615850e-47 |
| Msa0285450 | Msa1006660 | 0.801594 | 8.363738e-49 | -8.615850e-47 |
| Msa0288100 | Msa1006660 | 0.831880 | 1.298533e-55 | -8.615850e-47 |
| Msa0306210 | Msa1006660 | -0.813751 | 2.183937e-51 | -8.615850e-47 |
| Msa0309770 | Msa1006660 | 0.813940 | 1.984328e-51 | -8.615850e-47 |
| Msa0325830 | Msa1006660 | 0.818696 | 1.713477e-52 | -8.615850e-47 |
| Msa0331000 | Msa1006660 | 0.808367 | 3.206363e-50 | -8.615850e-47 |
| Msa0339250 | Msa1006660 | 0.801195 | 1.009525e-48 | -8.615850e-47 |
| Msa0339620 | Msa1006660 | 0.808488 | 3.021975e-50 | -8.615850e-47 |
| Msa0340450 | Msa1006660 | 0.819778 | 9.711956e-53 | -8.615850e-47 |
| Msa0345970 | Msa1006660 | 0.848600 | 5.526989e-60 | -8.615850e-47 |
| Msa0493630 | Msa1006660 | 0.806993 | 6.280846e-50 | -8.615850e-47 |
| Msa0517110 | Msa1006660 | 0.818598 | 1.802741e-52 | -8.615850e-47 |
| Msa0518380 | Msa1006660 | 0.800338 | 1.510050e-48 | -8.615850e-47 |
| Msa0521430 | Msa1006660 | 0.819758 | 9.815926e-53 | -8.615850e-47 |
| Msa0536130 | Msa1006660 | 0.810035 | 1.408196e-50 | -8.615850e-47 |
| Msa0545210 | Msa1006660 | 0.809328 | 1.998304e-50 | -8.615850e-47 |
| Msa0563840 | Msa1006660 | 0.814440 | 1.539226e-51 | -8.615850e-47 |
| Msa0577500 | Msa1006660 | 0.802944 | 4.411180e-49 | -8.615850e-47 |
| Msa0842620 | Msa1006660 | 0.927550 | 1.005651e-91 | -8.615850e-47 |
| Msa0849030 | Msa1006660 | 0.801730 | 7.844079e-49 | -8.615850e-47 |
| Msa0861090 | Msa1006660 | 0.821451 | 4.009195e-53 | -8.615850e-47 |
| Msa0861130 | Msa1006660 | 0.819774 | 9.735409e-53 | -8.615850e-47 |
| Msa0865510 | Msa1006660 | -0.802691 | 4.974487e-49 | -8.615850e-47 |
| Msa0880140 | Msa1006660 | 0.806596 | 7.616852e-50 | -8.615850e-47 |
| Msa0901500 | Msa1006660 | 0.816163 | 6.370085e-52 | -8.615850e-47 |
| Msa0907260 | Msa1006660 | 0.802129 | 6.495112e-49 | -8.615850e-47 |
| Msa0931520 | Msa1006660 | 0.809129 | 2.204020e-50 | -8.615850e-47 |
| Msa0935670 | Msa1006660 | 0.800456 | 1.428897e-48 | -8.615850e-47 |
| Msa0936300 | Msa1006660 | 0.805069 | 1.594503e-49 | -8.615850e-47 |
| Msa0938220 | Msa1006660 | 0.803024 | 4.247294e-49 | -8.615850e-47 |
| Msa0942200 | Msa1006660 | 0.802123 | 6.514932e-49 | -8.615850e-47 |
| Msa0972630 | Msa1006660 | 0.816202 | 6.243926e-52 | -8.615850e-47 |
| Msa0973100 | Msa1006660 | 0.800024 | 1.749466e-48 | -8.615850e-47 |
| Msa0979100 | Msa1006660 | 0.844012 | 9.838860e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006660 | MtrunA17_Chr6g0478601 | 65.625 | 96 | 27 | 3 | 68 | 163 | 292 | 381 | 5.38e-31 | 119 |
| Msa1006660 | MtrunA17_Chr8g0393041 | 79.452 | 73 | 15 | 0 | 151 | 223 | 521 | 593 | 5.93e-31 | 119 |
| Msa1006660 | MtrunA17_Chr4g0018201 | 40.000 | 110 | 60 | 1 | 51 | 160 | 922 | 1025 | 1.46e-19 | 87.4 |
| Msa1006660 | MtrunA17_Chr5g0428981 | 40.000 | 110 | 60 | 1 | 51 | 160 | 926 | 1029 | 2.49e-19 | 86.7 |
| Msa1006660 | MtrunA17_Chr4g0050371 | 59.375 | 64 | 26 | 0 | 162 | 225 | 541 | 604 | 2.67e-16 | 77.4 |
| Msa1006660 | MtrunA17_Chr7g0217071 | 68.000 | 50 | 16 | 0 | 1 | 50 | 1 | 50 | 9.46e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006660 | AT3G17850.1 | 60.825 | 97 | 22 | 3 | 69 | 160 | 1064 | 1149 | 1.26e-27 | 111 |
| Msa1006660 | AT1G48490.3 | 55.682 | 88 | 33 | 1 | 73 | 160 | 1008 | 1089 | 9.85e-22 | 94.0 |
| Msa1006660 | AT1G48490.2 | 55.682 | 88 | 33 | 1 | 73 | 160 | 1008 | 1089 | 9.85e-22 | 94.0 |
| Msa1006660 | AT1G48490.1 | 55.682 | 88 | 33 | 1 | 73 | 160 | 1008 | 1089 | 9.85e-22 | 94.0 |
| Msa1006660 | AT1G48490.4 | 55.682 | 88 | 33 | 1 | 73 | 160 | 1009 | 1090 | 1.01e-21 | 94.0 |
| Msa1006660 | AT5G62310.1 | 47.872 | 94 | 43 | 1 | 67 | 160 | 934 | 1021 | 1.04e-21 | 94.0 |
| Msa1006660 | AT3G17970.1 | 64.615 | 65 | 23 | 0 | 159 | 223 | 524 | 588 | 2.53e-20 | 89.7 |
| Msa1006660 | AT1G45160.2 | 41.844 | 141 | 69 | 4 | 69 | 202 | 848 | 982 | 3.75e-19 | 86.7 |
| Msa1006660 | AT1G45160.1 | 41.844 | 141 | 69 | 4 | 69 | 202 | 848 | 982 | 4.39e-19 | 86.3 |
| Msa1006660 | AT5G09420.1 | 57.576 | 66 | 28 | 0 | 159 | 224 | 538 | 603 | 9.47e-16 | 76.3 |
Find 50 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGACACACACTTCATTTC+TGG | 0.121979 | 7_1:-5450508 | Msa1006660:CDS |
| AACCACCTTAAACATATAAA+TGG | 0.168104 | 7_1:+5447202 | None:intergenic |
| TAGTCCCATTTATATGTTTA+AGG | 0.189143 | 7_1:-5447207 | Msa1006660:intron |
| AACTAAAACAATCATGTTAT+TGG | 0.192505 | 7_1:-5450425 | Msa1006660:CDS |
| CCACTCAAAGGAATGCTTAA+TGG | 0.256958 | 7_1:-5450553 | Msa1006660:CDS |
| CTCATTTCGTCGGGAACTTC+AGG | 0.295980 | 7_1:+5446684 | None:intergenic |
| CTGCGGATTGGTGGTCTGTT+GGG | 0.324256 | 7_1:-5446890 | Msa1006660:CDS |
| TCTCTCTAGTTGTACCTCTA+TGG | 0.346394 | 7_1:+5446278 | None:intergenic |
| AGGTACAACTAGAGAGATAC+TGG | 0.350120 | 7_1:-5446272 | Msa1006660:CDS |
| CGTTCCCTTCCTCCGTTCTC+AGG | 0.381241 | 7_1:+5447308 | None:intergenic |
| ACTAAAACAATCATGTTATT+GGG | 0.383181 | 7_1:-5450424 | Msa1006660:CDS |
| ACAATCATGTTATTGGGAAA+TGG | 0.389994 | 7_1:-5450418 | Msa1006660:CDS |
| ACTGCGGATTGGTGGTCTGT+TGG | 0.420353 | 7_1:-5446891 | Msa1006660:CDS |
| ATCTCAGGAGCTAAGTAATC+AGG | 0.429237 | 7_1:+5447257 | None:intergenic |
| GGTATTCCACCCTTCAACTC+AGG | 0.431664 | 7_1:-5446843 | Msa1006660:intron |
| TACTTGAGCCAACCAACAAA+AGG | 0.440758 | 7_1:-5446207 | Msa1006660:CDS |
| TGTTGGTTGGCTCAAGTACA+AGG | 0.448590 | 7_1:+5446212 | None:intergenic |
| CCAGTTCCTAAAAGTATCTC+AGG | 0.463458 | 7_1:+5447242 | None:intergenic |
| CTTCAGCTTCTGAAATATTG+AGG | 0.464148 | 7_1:-5446180 | Msa1006660:CDS |
| CAAAGTTAAACCTGAGTTGA+AGG | 0.467216 | 7_1:+5446833 | None:intergenic |
| ACCACCTTAAACATATAAAT+GGG | 0.471103 | 7_1:+5447203 | None:intergenic |
| AATTACTCAAGAAAAGTTGA+AGG | 0.472676 | 7_1:-5446152 | Msa1006660:CDS |
| TTCTTAATCGTAAGATACCT+TGG | 0.479559 | 7_1:-5446707 | Msa1006660:CDS |
| CAGCGTATACTGCGGATTGG+TGG | 0.508993 | 7_1:-5446899 | Msa1006660:CDS |
| AGGAAGAAGCGTTCCGCTGT+TGG | 0.509264 | 7_1:-5447284 | Msa1006660:CDS |
| GCTTCAAGACTCATTTCGTC+GGG | 0.510873 | 7_1:+5446675 | None:intergenic |
| TTCATTTCTGGTCGAGAGCG+AGG | 0.513389 | 7_1:-5450496 | Msa1006660:CDS |
| TGCTTCAAGACTCATTTCGT+CGG | 0.519672 | 7_1:+5446674 | None:intergenic |
| TTGCAGCGTATACTGCGGAT+TGG | 0.527291 | 7_1:-5446902 | Msa1006660:intron |
| CCATTAAGCATTCCTTTGAG+TGG | 0.533842 | 7_1:+5450553 | Msa1006670:CDS |
| TAAGCAAGCAAATGCGACTA+CGG | 0.548524 | 7_1:-5450464 | Msa1006660:CDS |
| TAGCTCCTGAGAACGGAGGA+AGG | 0.550507 | 7_1:-5447313 | Msa1006660:CDS |
| TCGTCGGGAACTTCAGGCCA+AGG | 0.554191 | 7_1:+5446690 | None:intergenic |
| TGCGGATTGGTGGTCTGTTG+GGG | 0.554893 | 7_1:-5446889 | Msa1006660:CDS |
| TCATTTCTGGTCGAGAGCGA+GGG | 0.559593 | 7_1:-5450495 | Msa1006660:CDS |
| ACTTGAGCCAACCAACAAAA+GGG | 0.575182 | 7_1:-5446206 | Msa1006660:CDS |
| TGCACTGAAATTCCACTCAA+AGG | 0.575318 | 7_1:-5450565 | Msa1006660:CDS |
| CTGAGAACGGAGGAAGGGAA+CGG | 0.588381 | 7_1:-5447307 | Msa1006660:CDS |
| GATTACTTAGCTCCTGAGAA+CGG | 0.591680 | 7_1:-5447320 | Msa1006660:intron |
| AAGCACATGATCTTATTGAT+CGG | 0.593041 | 7_1:-5446656 | Msa1006660:intron |
| AGCTCCTGAGAACGGAGGAA+GGG | 0.604860 | 7_1:-5447312 | Msa1006660:CDS |
| AAAGTTAAACCTGAGTTGAA+GGG | 0.612794 | 7_1:+5446834 | None:intergenic |
| GTTAAACCTGAGTTGAAGGG+TGG | 0.613746 | 7_1:+5446837 | None:intergenic |
| ATGAAGGCATACTTCCATAG+AGG | 0.619428 | 7_1:-5446292 | Msa1006660:CDS |
| TGGCAGTTATCTTCAAGCTG+AGG | 0.631157 | 7_1:-5446353 | Msa1006660:intron |
| GTTGGTTGGCTCAAGTACAA+GGG | 0.632408 | 7_1:+5446213 | None:intergenic |
| AGAACGGAGGAAGGGAACGG+AGG | 0.664935 | 7_1:-5447304 | Msa1006660:CDS |
| GGTACAACTAGAGAGATACT+GGG | 0.665492 | 7_1:-5446271 | Msa1006660:CDS |
| GTAATCAGGTGTGCCAACAG+CGG | 0.675334 | 7_1:+5447271 | None:intergenic |
| TACTTAGCTCCTGAGAACGG+AGG | 0.696955 | 7_1:-5447317 | Msa1006660:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAAAAAACTTG+TGG | - | chr7_1:5446665-5446684 | Msa1006660:CDS | 10.0% |
| !!! | TATTTTATTTTGAAATTAAC+AGG | - | chr7_1:5448955-5448974 | Msa1006660:intron | 10.0% |
| !!! | ATTTTATTTTGAAATTAACA+GGG | - | chr7_1:5448956-5448975 | Msa1006660:intron | 10.0% |
| !!! | TGTTTATATTTTTATTCTTT+TGG | - | chr7_1:5449916-5449935 | Msa1006660:intron | 10.0% |
| !! | GTAATTTCTTTGTAATATAA+AGG | + | chr7_1:5446528-5446547 | None:intergenic | 15.0% |
| !! | TGAACATTCAATTATAAAAT+GGG | + | chr7_1:5446576-5446595 | None:intergenic | 15.0% |
| !!! | ACTTGAAATTAAGTTTTTAA+TGG | - | chr7_1:5446742-5446761 | Msa1006660:intron | 15.0% |
| !!! | AAAATTCAGATATTTTAAAG+TGG | + | chr7_1:5447028-5447047 | None:intergenic | 15.0% |
| !!! | ATATCTGAATTTTTTGTAAA+TGG | - | chr7_1:5447035-5447054 | Msa1006660:intron | 15.0% |
| !!! | TATCTGAATTTTTTGTAAAT+GGG | - | chr7_1:5447036-5447055 | Msa1006660:intron | 15.0% |
| !! | AACTAAAACAATCATGTTAT+TGG | - | chr7_1:5446284-5446303 | Msa1006660:CDS | 20.0% |
| !! | ACTAAAACAATCATGTTATT+GGG | - | chr7_1:5446285-5446304 | Msa1006660:CDS | 20.0% |
| !! | GTGAACATTCAATTATAAAA+TGG | + | chr7_1:5446577-5446596 | None:intergenic | 20.0% |
| !! | AAATTAAAACCTTATGTACT+TGG | - | chr7_1:5446823-5446842 | Msa1006660:intron | 20.0% |
| !! | GTTCTGTATAATATATCAAT+CGG | - | chr7_1:5446898-5446917 | Msa1006660:CDS | 20.0% |
| !!! | ATCAAACTCATTTTTCAATT+AGG | + | chr7_1:5447357-5447376 | None:intergenic | 20.0% |
| !! | TTGAATTGGTTAGTAATATT+GGG | + | chr7_1:5447876-5447895 | None:intergenic | 20.0% |
| !! | TTTGAATTGGTTAGTAATAT+TGG | + | chr7_1:5447877-5447896 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTAATGTTACTGA+AGG | + | chr7_1:5447949-5447968 | None:intergenic | 20.0% |
| !! | TTCTTTATTGATATTACTGA+CGG | + | chr7_1:5447998-5448017 | None:intergenic | 20.0% |
| !! | TAAATGAGAAATTAGAGAAT+CGG | + | chr7_1:5448575-5448594 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATTGTTTGTTTT+AGG | - | chr7_1:5448594-5448613 | Msa1006660:intron | 20.0% |
| !!! | TTTTCCAATTGTTTGTTTTA+GGG | - | chr7_1:5448595-5448614 | Msa1006660:intron | 20.0% |
| !!! | TTAGAATTGGGAATTTTTTT+AGG | - | chr7_1:5448619-5448638 | Msa1006660:intron | 20.0% |
| !!! | TAGAATTGGGAATTTTTTTA+GGG | - | chr7_1:5448620-5448639 | Msa1006660:intron | 20.0% |
| !!! | TTTTTTTAGGGTTTTAGAAT+TGG | - | chr7_1:5448651-5448670 | Msa1006660:intron | 20.0% |
| !!! | TTTTTTAGGGTTTTAGAATT+GGG | - | chr7_1:5448652-5448671 | Msa1006660:intron | 20.0% |
| !!! | ATTTCTTTTAGATCAAATTG+TGG | - | chr7_1:5448995-5449014 | Msa1006660:intron | 20.0% |
| !!! | ATTTGAACAAATATTTTTGC+AGG | + | chr7_1:5449786-5449805 | None:intergenic | 20.0% |
| !!! | AACTACCTATTTTTTGTAAT+TGG | - | chr7_1:5450146-5450165 | Msa1006660:intron | 20.0% |
| !! | AAGAACCAATTACAAAAAAT+AGG | + | chr7_1:5450154-5450173 | None:intergenic | 20.0% |
| ! | TATATTGTCATCACTTCAAT+TGG | + | chr7_1:5446364-5446383 | None:intergenic | 25.0% |
| ! | AAATGTGATGTATATAGCTT+TGG | + | chr7_1:5446429-5446448 | None:intergenic | 25.0% |
| ! | ATACTCACAGTTTATGAAAA+TGG | + | chr7_1:5447136-5447155 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCAATTAGGTTT+TGG | + | chr7_1:5447351-5447370 | None:intergenic | 25.0% |
| ! | GGATGATTGAATAAAAAAAC+TGG | - | chr7_1:5447668-5447687 | Msa1006660:intron | 25.0% |
| ! | ACAAAACCAAAACCAATATT+TGG | - | chr7_1:5447810-5447829 | Msa1006660:intron | 25.0% |
| !! | TCAGTAATGCAATTTTGAAT+TGG | + | chr7_1:5447890-5447909 | None:intergenic | 25.0% |
| ! | AATTCAAAATTGCATTACTG+AGG | - | chr7_1:5447889-5447908 | Msa1006660:intron | 25.0% |
| ! | ATTCAAAATTGCATTACTGA+GGG | - | chr7_1:5447890-5447909 | Msa1006660:intron | 25.0% |
| ! | TTAATTACTTCAATTACTGG+CGG | + | chr7_1:5448298-5448317 | None:intergenic | 25.0% |
| ! | GGATTAATTACTTCAATTAC+TGG | + | chr7_1:5448301-5448320 | None:intergenic | 25.0% |
| ! | ATCAATTTGCATAGCATTAT+TGG | + | chr7_1:5448400-5448419 | None:intergenic | 25.0% |
| ! | TAAACCCTAAAACAAACAAT+TGG | + | chr7_1:5448602-5448621 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAGGGTTTAGAAT+TGG | - | chr7_1:5448606-5448625 | Msa1006660:intron | 25.0% |
| !!! | TTGTTTTAGGGTTTAGAATT+GGG | - | chr7_1:5448607-5448626 | Msa1006660:intron | 25.0% |
| !!! | TAGGGTCTTCAAATTTTTTT+AGG | - | chr7_1:5448638-5448657 | Msa1006660:intron | 25.0% |
| !!! | AGGGTCTTCAAATTTTTTTA+GGG | - | chr7_1:5448639-5448658 | Msa1006660:intron | 25.0% |
| !!! | TTTTTAGGGTTTTAGAATTG+GGG | - | chr7_1:5448653-5448672 | Msa1006660:intron | 25.0% |
| ! | AAACAAAACAAACAGATTCA+TGG | + | chr7_1:5448708-5448727 | None:intergenic | 25.0% |
| ! | AAAGATTTACATACAACTTC+AGG | + | chr7_1:5449156-5449175 | None:intergenic | 25.0% |
| ! | ATTATTAAGATGCAATTGCA+AGG | - | chr7_1:5449178-5449197 | Msa1006660:intron | 25.0% |
| !! | TTGGTTCAATAGTAAGATTT+TGG | - | chr7_1:5449243-5449262 | Msa1006660:intron | 25.0% |
| ! | TAGTCCCATTTATATGTTTA+AGG | - | chr7_1:5449502-5449521 | Msa1006660:intron | 25.0% |
| ! | ACCACCTTAAACATATAAAT+GGG | + | chr7_1:5449509-5449528 | None:intergenic | 25.0% |
| ! | AACCACCTTAAACATATAAA+TGG | + | chr7_1:5449510-5449529 | None:intergenic | 25.0% |
| !! | TTTTTCATCGCTTAAAATGA+AGG | - | chr7_1:5449544-5449563 | Msa1006660:intron | 25.0% |
| ! | GGCTACTATAATAACAAAAA+GGG | + | chr7_1:5449686-5449705 | None:intergenic | 25.0% |
| ! | AGGCTACTATAATAACAAAA+AGG | + | chr7_1:5449687-5449706 | None:intergenic | 25.0% |
| !!! | ATTTTATTTGAGTTGCTTGT+TGG | - | chr7_1:5449845-5449864 | Msa1006660:intron | 25.0% |
| ! | ACACAAAATTACATAATCTG+TGG | + | chr7_1:5449960-5449979 | None:intergenic | 25.0% |
| ! | AATTACTCAAGAAAAGTTGA+AGG | - | chr7_1:5450557-5450576 | Msa1006660:CDS | 25.0% |
| ACAATCATGTTATTGGGAAA+TGG | - | chr7_1:5446291-5446310 | Msa1006660:CDS | 30.0% | |
| ! | GCTTCTTGAAACTATCTTTT+GGG | + | chr7_1:5446497-5446516 | None:intergenic | 30.0% |
| ! | AGCTTCTTGAAACTATCTTT+TGG | + | chr7_1:5446498-5446517 | None:intergenic | 30.0% |
| ! | TTTTTACTGCCAAGTACATA+AGG | + | chr7_1:5446835-5446854 | None:intergenic | 30.0% |
| ACTACAAGAATTCCCAATTA+GGG | - | chr7_1:5446954-5446973 | Msa1006660:intron | 30.0% | |
| !!! | ATTTTAAAGTGGACTGGATA+TGG | + | chr7_1:5447017-5447036 | None:intergenic | 30.0% |
| !!! | TCAGATATTTTAAAGTGGAC+TGG | + | chr7_1:5447023-5447042 | None:intergenic | 30.0% |
| ! | ATATCCAACCCGTTTAAAAT+GGG | + | chr7_1:5447073-5447092 | None:intergenic | 30.0% |
| ATATCCAACCGGTTAAAATT+CGG | - | chr7_1:5447089-5447108 | Msa1006660:intron | 30.0% | |
| AGTTTATGAAAATGGCCAAA+TGG | + | chr7_1:5447128-5447147 | None:intergenic | 30.0% | |
| !! | ACTGGATTAGTTCAAAAAAC+TGG | - | chr7_1:5447686-5447705 | Msa1006660:intron | 30.0% |
| !!! | GTTTTTAAGTACAACCAGTT+TGG | + | chr7_1:5447764-5447783 | None:intergenic | 30.0% |
| AACTGGTTGTACTTAAAAAC+CGG | - | chr7_1:5447764-5447783 | Msa1006660:intron | 30.0% | |
| !!! | CCAAAACCAAATATTGGTTT+TGG | + | chr7_1:5447819-5447838 | None:intergenic | 30.0% |
| !! | CCAAAACCAATATTTGGTTT+TGG | - | chr7_1:5447816-5447835 | Msa1006660:intron | 30.0% |
| CCAAAACCAAAACCAAATAT+TGG | + | chr7_1:5447825-5447844 | None:intergenic | 30.0% | |
| !!! | CCAATATTTGGTTTTGGTTT+TGG | - | chr7_1:5447822-5447841 | Msa1006660:intron | 30.0% |
| !!! | ATTTGGTTTTGGTTTTGGTT+TGG | - | chr7_1:5447827-5447846 | Msa1006660:intron | 30.0% |
| GTTAGTAATATTGGGAATAG+GGG | + | chr7_1:5447868-5447887 | None:intergenic | 30.0% | |
| GGTTAGTAATATTGGGAATA+GGG | + | chr7_1:5447869-5447888 | None:intergenic | 30.0% | |
| TGGTTAGTAATATTGGGAAT+AGG | + | chr7_1:5447870-5447889 | None:intergenic | 30.0% | |
| ATCCGTTATACTATTACTGT+CGG | + | chr7_1:5448099-5448118 | None:intergenic | 30.0% | |
| AATCCGACAGTAATAGTATA+AGG | - | chr7_1:5448194-5448213 | Msa1006660:intron | 30.0% | |
| ATCCGACAGTAATAGTATAA+GGG | - | chr7_1:5448195-5448214 | Msa1006660:intron | 30.0% | |
| ATCCCTTATACTATTACTGT+CGG | + | chr7_1:5448200-5448219 | None:intergenic | 30.0% | |
| TTCGAATGCAACATTATTAC+TGG | + | chr7_1:5448254-5448273 | None:intergenic | 30.0% | |
| ! | TTGACGGATACGTTTATTAA+TGG | + | chr7_1:5448361-5448380 | None:intergenic | 30.0% |
| CGGATTTCATTCATTATTGA+CGG | + | chr7_1:5448377-5448396 | None:intergenic | 30.0% | |
| AATTTGCATAGCATTATTGG+CGG | + | chr7_1:5448397-5448416 | None:intergenic | 30.0% | |
| AAAACACAAAGATGTACTGT+GGG | + | chr7_1:5448776-5448795 | None:intergenic | 30.0% | |
| TAAAACACAAAGATGTACTG+TGG | + | chr7_1:5448777-5448796 | None:intergenic | 30.0% | |
| GAAGAGAAAAAAAAATGTCC+TGG | - | chr7_1:5448884-5448903 | Msa1006660:intron | 30.0% | |
| ! | TTTTAGACAGGGAACTTTTT+AGG | - | chr7_1:5448931-5448950 | Msa1006660:intron | 30.0% |
| TCACAGTTAAAAGATATGTG+TGG | - | chr7_1:5449053-5449072 | Msa1006660:intron | 30.0% | |
| ! | ATGTGTCAAACATTTTTGCA+AGG | - | chr7_1:5449274-5449293 | Msa1006660:intron | 30.0% |
| TAATCAACCGAAAAAACACT+CGG | + | chr7_1:5449374-5449393 | None:intergenic | 30.0% | |
| TCCCATTTATATGTTTAAGG+TGG | - | chr7_1:5449505-5449524 | Msa1006660:intron | 30.0% | |
| ! | AAAGTTAAACCTGAGTTGAA+GGG | + | chr7_1:5449878-5449897 | None:intergenic | 30.0% |
| TTCTTAATCGTAAGATACCT+TGG | - | chr7_1:5450002-5450021 | Msa1006660:intron | 30.0% | |
| AAGCACATGATCTTATTGAT+CGG | - | chr7_1:5450053-5450072 | Msa1006660:intron | 30.0% | |
| CTGTTCTTGTCATATGTATT+AGG | - | chr7_1:5450108-5450127 | Msa1006660:intron | 30.0% | |
| CAACATTAGTATGTCAACAA+AGG | + | chr7_1:5450232-5450251 | None:intergenic | 30.0% | |
| CTTTGTTGACATACTAATGT+TGG | - | chr7_1:5450230-5450249 | Msa1006660:intron | 30.0% | |
| ! | GTCCCATATCTTGTTATATT+CGG | - | chr7_1:5450252-5450271 | Msa1006660:intron | 30.0% |
| ! | TCCCATATCTTGTTATATTC+GGG | - | chr7_1:5450253-5450272 | Msa1006660:intron | 30.0% |
| TCCCGAATATAACAAGATAT+GGG | + | chr7_1:5450257-5450276 | None:intergenic | 30.0% | |
| TTCCCGAATATAACAAGATA+TGG | + | chr7_1:5450258-5450277 | None:intergenic | 30.0% | |
| ! | TCTTGACAAAAAGAGTATGA+AGG | - | chr7_1:5450401-5450420 | Msa1006660:intron | 30.0% |
| AGTGATGACAATATATCACC+AGG | - | chr7_1:5446369-5446388 | Msa1006660:intron | 35.0% | |
| GTGATGACAATATATCACCA+GGG | - | chr7_1:5446370-5446389 | Msa1006660:intron | 35.0% | |
| GTGGCACTTGAAACTTTAAT+GGG | + | chr7_1:5446402-5446421 | None:intergenic | 35.0% | |
| AGTGGCACTTGAAACTTTAA+TGG | + | chr7_1:5446403-5446422 | None:intergenic | 35.0% | |
| !! | TGTATATAGCTTTGGAGTAG+TGG | + | chr7_1:5446421-5446440 | None:intergenic | 35.0% |
| TGCTCATGGTGATTTCATAA+TGG | + | chr7_1:5446463-5446482 | None:intergenic | 35.0% | |
| ATTATGAAATCACCATGAGC+AGG | - | chr7_1:5446462-5446481 | Msa1006660:intron | 35.0% | |
| CACTACAAGAATTCCCAATT+AGG | - | chr7_1:5446953-5446972 | Msa1006660:intron | 35.0% | |
| CTACAAGAATTCCCAATTAG+GGG | - | chr7_1:5446955-5446974 | Msa1006660:intron | 35.0% | |
| ! | TGTGCATAACAACCAGTTTT+AGG | - | chr7_1:5446978-5446997 | Msa1006660:intron | 35.0% |
| ! | ACCAACCAACCCATTTTAAA+CGG | - | chr7_1:5447061-5447080 | Msa1006660:intron | 35.0% |
| GATATCCAACCCGTTTAAAA+TGG | + | chr7_1:5447074-5447093 | None:intergenic | 35.0% | |
| AACCGGTTAAAATTCGGATT+CGG | - | chr7_1:5447095-5447114 | Msa1006660:intron | 35.0% | |
| !! | ATCCGAATCCGAATTTTAAC+CGG | + | chr7_1:5447100-5447119 | None:intergenic | 35.0% |
| !! | GGATTCGGATTTTAACCATT+TGG | - | chr7_1:5447110-5447129 | Msa1006660:intron | 35.0% |
| ! | GTTTATGAGAATCGATTCCA+TGG | + | chr7_1:5447167-5447186 | None:intergenic | 35.0% |
| TGTTACTGTGAATCCAGATT+CGG | - | chr7_1:5447438-5447457 | Msa1006660:intron | 35.0% | |
| TAACACAAAATCACCGAATC+TGG | + | chr7_1:5447454-5447473 | None:intergenic | 35.0% | |
| !!! | AGATTCGGTGATTTTGTGTT+AGG | - | chr7_1:5447453-5447472 | Msa1006660:intron | 35.0% |
| TTATGAAGATAGCATAGCGT+TGG | - | chr7_1:5447511-5447530 | Msa1006660:intron | 35.0% | |
| TTATGAAGATAGCATAGCGT+TGG | - | chr7_1:5447511-5447530 | Msa1006660:intron | 35.0% | |
| !!! | TTTTGTGCTGTTAGCTTTCT+TGG | - | chr7_1:5447644-5447663 | Msa1006660:intron | 35.0% |
| !!! | AACTGGTTTTTCTGACAAAC+CGG | - | chr7_1:5447703-5447722 | Msa1006660:intron | 35.0% |
| AAGTACAACCAGTTTGGATA+TGG | + | chr7_1:5447758-5447777 | None:intergenic | 35.0% | |
| !!! | AAAACCGGTTTTTAGTGAAG+TGG | - | chr7_1:5447779-5447798 | Msa1006660:intron | 35.0% |
| GAAACCACTTCACTAAAAAC+CGG | + | chr7_1:5447786-5447805 | None:intergenic | 35.0% | |
| ATTGCATTACTGAGGGATTT+AGG | - | chr7_1:5447897-5447916 | Msa1006660:intron | 35.0% | |
| AACCTCAATAACGTTACTGA+CGG | - | chr7_1:5447966-5447985 | Msa1006660:intron | 35.0% | |
| AAGAACCTACGATGTATTAC+TGG | - | chr7_1:5448013-5448032 | Msa1006660:intron | 35.0% | |
| ATGTGCGTTTACATTATTGG+CGG | + | chr7_1:5448049-5448068 | None:intergenic | 35.0% | |
| GTCCGACAGTAATAGTATAA+CGG | - | chr7_1:5448094-5448113 | Msa1006660:intron | 35.0% | |
| ATGTGCGTTCACATTATTGA+CGG | + | chr7_1:5448150-5448169 | None:intergenic | 35.0% | |
| TATATCCCTCAGTAACACAA+AGG | + | chr7_1:5448174-5448193 | None:intergenic | 35.0% | |
| GAATGCAACATTATTACTGG+CGG | + | chr7_1:5448251-5448270 | None:intergenic | 35.0% | |
| ACAGAAATACACTTCTGTGA+AGG | + | chr7_1:5448434-5448453 | None:intergenic | 35.0% | |
| TGAGAAATTAGAGAATCGGT+TGG | + | chr7_1:5448571-5448590 | None:intergenic | 35.0% | |
| AATACGAAGAAACAGCAGAA+GGG | + | chr7_1:5448839-5448858 | None:intergenic | 35.0% | |
| AAATACGAAGAAACAGCAGA+AGG | + | chr7_1:5448840-5448859 | None:intergenic | 35.0% | |
| TAAGTTGTTGCCTTATGACA+GGG | + | chr7_1:5449022-5449041 | None:intergenic | 35.0% | |
| AAAGATATGTGTGGTTTACG+TGG | - | chr7_1:5449062-5449081 | Msa1006660:intron | 35.0% | |
| AAGATATGTGTGGTTTACGT+GGG | - | chr7_1:5449063-5449082 | Msa1006660:intron | 35.0% | |
| AGGAACTAATCATAGTTCTC+AGG | - | chr7_1:5449111-5449130 | Msa1006660:intron | 35.0% | |
| GGAACTAATCATAGTTCTCA+GGG | - | chr7_1:5449112-5449131 | Msa1006660:intron | 35.0% | |
| CTAAATCTCATCATGGAGAT+TGG | - | chr7_1:5449317-5449336 | Msa1006660:intron | 35.0% | |
| ! | TTAGCTCCTGAGATACTTTT+AGG | - | chr7_1:5449461-5449480 | Msa1006660:intron | 35.0% |
| !! | ATACTTTTAGGAACTGGACA+TGG | - | chr7_1:5449473-5449492 | Msa1006660:intron | 35.0% |
| TGTAAAACCACTAAATCAGC+AGG | + | chr7_1:5449707-5449726 | None:intergenic | 35.0% | |
| ! | AAATTTTGCAGCGTATACTG+CGG | - | chr7_1:5449802-5449821 | Msa1006660:intron | 35.0% |
| ! | CAAAGTTAAACCTGAGTTGA+AGG | + | chr7_1:5449879-5449898 | None:intergenic | 35.0% |
| !! | CTTCAGCTTCTGAAATATTG+AGG | - | chr7_1:5450529-5450548 | Msa1006660:CDS | 35.0% |
| TGCACTGAAATTCCACTCAA+AGG | - | chr7_1:5446144-5446163 | Msa1006660:CDS | 40.0% | |
| CCATTAAGCATTCCTTTGAG+TGG | + | chr7_1:5446159-5446178 | None:intergenic | 40.0% | |
| CCACTCAAAGGAATGCTTAA+TGG | - | chr7_1:5446156-5446175 | Msa1006660:CDS | 40.0% | |
| TTCGACACACACTTCATTTC+TGG | - | chr7_1:5446201-5446220 | Msa1006660:CDS | 40.0% | |
| TAAGCAAGCAAATGCGACTA+CGG | - | chr7_1:5446245-5446264 | Msa1006660:CDS | 40.0% | |
| TATTGGGAAATGGAAGACGT+TGG | - | chr7_1:5446301-5446320 | Msa1006660:CDS | 40.0% | |
| AATCACCATGAGCAGGTTAA+AGG | - | chr7_1:5446469-5446488 | Msa1006660:intron | 40.0% | |
| CAATCGGAAAAACAGACGAA+CGG | - | chr7_1:5446914-5446933 | Msa1006660:intron | 40.0% | |
| TGTTATGCACACCCCTAATT+GGG | + | chr7_1:5446969-5446988 | None:intergenic | 40.0% | |
| TTGTTATGCACACCCCTAAT+TGG | + | chr7_1:5446970-5446989 | None:intergenic | 40.0% | |
| CTGGATATGGTTATGGGTTT+GGG | + | chr7_1:5447004-5447023 | None:intergenic | 40.0% | |
| ACTGGATATGGTTATGGGTT+TGG | + | chr7_1:5447005-5447024 | None:intergenic | 40.0% | |
| !! | AGTGGACTGGATATGGTTAT+GGG | + | chr7_1:5447010-5447029 | None:intergenic | 40.0% |
| !! | AAGTGGACTGGATATGGTTA+TGG | + | chr7_1:5447011-5447030 | None:intergenic | 40.0% |
| ! | CCAACCAACCCATTTTAAAC+GGG | - | chr7_1:5447062-5447081 | Msa1006660:intron | 40.0% |
| !! | GAATCCGAATTTTAACCGGT+TGG | + | chr7_1:5447096-5447115 | None:intergenic | 40.0% |
| TGTGAGTATCAAATCCACCA+TGG | - | chr7_1:5447147-5447166 | Msa1006660:intron | 40.0% | |
| ! | TATGAGAATCGATTCCATGG+TGG | + | chr7_1:5447164-5447183 | None:intergenic | 40.0% |
| TTGAGAGATGAAGATAGCGT+TGG | + | chr7_1:5447224-5447243 | None:intergenic | 40.0% | |
| GTGAAGAAGAAGAAGAACCT+CGG | + | chr7_1:5447269-5447288 | None:intergenic | 40.0% | |
| GTTTGGATATGGTTCAGAAC+CGG | + | chr7_1:5447747-5447766 | None:intergenic | 40.0% | |
| ! | GTTCTGAACCATATCCAAAC+TGG | - | chr7_1:5447747-5447766 | Msa1006660:intron | 40.0% |
| TTTAGGCCCTCAGTAATTAC+TGG | - | chr7_1:5447914-5447933 | Msa1006660:intron | 40.0% | |
| ATTCCGCCAGTAATTACTGA+GGG | + | chr7_1:5447923-5447942 | None:intergenic | 40.0% | |
| TATTCCGCCAGTAATTACTG+AGG | + | chr7_1:5447924-5447943 | None:intergenic | 40.0% | |
| ATCCGTCAGTAACGTTATTG+AGG | + | chr7_1:5447971-5447990 | None:intergenic | 40.0% | |
| AACCTACGATGTATTACTGG+CGG | - | chr7_1:5448016-5448035 | Msa1006660:intron | 40.0% | |
| GGCATGTGCGTTTACATTAT+TGG | + | chr7_1:5448052-5448071 | None:intergenic | 40.0% | |
| TATATCCCTCAGTAACGCAA+AGG | + | chr7_1:5448073-5448092 | None:intergenic | 40.0% | |
| ! | ACATGCCTTTGTGTTACTGA+GGG | - | chr7_1:5448166-5448185 | Msa1006660:intron | 40.0% |
| CGGAATTTGTGTCTTACTGA+CGG | + | chr7_1:5448278-5448297 | None:intergenic | 40.0% | |
| ATTTGACGGAGAAACAACAG+TGG | + | chr7_1:5448496-5448515 | None:intergenic | 40.0% | |
| GAACTGAGAGAGAGAATAAG+CGG | + | chr7_1:5448524-5448543 | None:intergenic | 40.0% | |
| TTCTCAATCACCTTAAGCCA+TGG | - | chr7_1:5448541-5448560 | Msa1006660:intron | 40.0% | |
| !!! | AGGGTTTTAGAATTGGGGAA+TGG | - | chr7_1:5448658-5448677 | Msa1006660:intron | 40.0% |
| !!! | GGGTTTTAGAATTGGGGAAT+GGG | - | chr7_1:5448659-5448678 | Msa1006660:intron | 40.0% |
| !!! | GGTTTTAGAATTGGGGAATG+GGG | - | chr7_1:5448660-5448679 | Msa1006660:intron | 40.0% |
| ! | AGTTCCCTGTCTAAAACGAT+GGG | + | chr7_1:5448927-5448946 | None:intergenic | 40.0% |
| ! | AAGTTCCCTGTCTAAAACGA+TGG | + | chr7_1:5448928-5448947 | None:intergenic | 40.0% |
| AAATTGTGGTCCCTGTCATA+AGG | - | chr7_1:5449009-5449028 | Msa1006660:intron | 40.0% | |
| GTAAGTTGTTGCCTTATGAC+AGG | + | chr7_1:5449023-5449042 | None:intergenic | 40.0% | |
| CAACACAGATGTGATTGAGA+AGG | - | chr7_1:5449091-5449110 | Msa1006660:intron | 40.0% | |
| ACCACACAGAAACATGTCAT+TGG | - | chr7_1:5449224-5449243 | Msa1006660:intron | 40.0% | |
| ! | ACCAATGACATGTTTCTGTG+TGG | + | chr7_1:5449228-5449247 | None:intergenic | 40.0% |
| ATTTAGCTACTCCACTGTCA+TGG | + | chr7_1:5449303-5449322 | None:intergenic | 40.0% | |
| GGAGTAGCTAAATCTCATCA+TGG | - | chr7_1:5449310-5449329 | Msa1006660:intron | 40.0% | |
| !! | ATTGGCTCTGCATTTGGTTT+CGG | - | chr7_1:5449335-5449354 | Msa1006660:intron | 40.0% |
| ! | TCTGCATTTGGTTTCGGTTT+GGG | - | chr7_1:5449341-5449360 | Msa1006660:intron | 40.0% |
| !!! | CTAACAGCCGAGTGTTTTTT+CGG | - | chr7_1:5449364-5449383 | Msa1006660:intron | 40.0% |
| GATTACTTAGCTCCTGAGAA+CGG | - | chr7_1:5449389-5449408 | Msa1006660:intron | 40.0% | |
| ATCTCAGGAGCTAAGTAATC+AGG | + | chr7_1:5449455-5449474 | None:intergenic | 40.0% | |
| !! | CCAGTTCCTAAAAGTATCTC+AGG | + | chr7_1:5449470-5449489 | None:intergenic | 40.0% |
| !! | CCTGAGATACTTTTAGGAAC+TGG | - | chr7_1:5449467-5449486 | Msa1006660:intron | 40.0% |
| !! | ATAGTAGCCTGCTGATTTAG+TGG | - | chr7_1:5449697-5449716 | Msa1006660:intron | 40.0% |
| TGCTTCAAGACTCATTTCGT+CGG | + | chr7_1:5450038-5450057 | None:intergenic | 40.0% | |
| ! | GCTGTTTGTTAGTGCAGATA+TGG | - | chr7_1:5450206-5450225 | Msa1006660:intron | 40.0% |
| CTAAAGACCATGTATCCTTC+AGG | - | chr7_1:5450320-5450339 | Msa1006660:intron | 40.0% | |
| AGAAACACCTGAAGGATACA+TGG | + | chr7_1:5450330-5450349 | Msa1006670:CDS | 40.0% | |
| CAAGCTTAAGAAACACCTGA+AGG | + | chr7_1:5450338-5450357 | Msa1006670:CDS | 40.0% | |
| CTTCAGGTGTTTCTTAAGCT+TGG | - | chr7_1:5450336-5450355 | Msa1006660:intron | 40.0% | |
| ! | ATGAAGGCATACTTCCATAG+AGG | - | chr7_1:5450417-5450436 | Msa1006660:CDS | 40.0% |
| TCTCTCTAGTTGTACCTCTA+TGG | + | chr7_1:5450434-5450453 | Msa1006670:CDS | 40.0% | |
| AGGTACAACTAGAGAGATAC+TGG | - | chr7_1:5450437-5450456 | Msa1006660:CDS | 40.0% | |
| GGTACAACTAGAGAGATACT+GGG | - | chr7_1:5450438-5450457 | Msa1006660:CDS | 40.0% | |
| TACTTGAGCCAACCAACAAA+AGG | - | chr7_1:5450502-5450521 | Msa1006660:CDS | 40.0% | |
| ACTTGAGCCAACCAACAAAA+GGG | - | chr7_1:5450503-5450522 | Msa1006660:CDS | 40.0% | |
| ACTTTAATGGGAAGACACCC+TGG | + | chr7_1:5446390-5446409 | None:intergenic | 45.0% | |
| TATGGGTTTGGGCCTAAAAC+TGG | + | chr7_1:5446993-5447012 | None:intergenic | 45.0% | |
| !! | CCCGTTTAAAATGGGTTGGT+TGG | + | chr7_1:5447065-5447084 | None:intergenic | 45.0% |
| ! | CCAACCCGTTTAAAATGGGT+TGG | + | chr7_1:5447069-5447088 | None:intergenic | 45.0% |
| ! | CCAACCCATTTTAAACGGGT+TGG | - | chr7_1:5447066-5447085 | Msa1006660:intron | 45.0% |
| !! | AAACGGGTTGGATATCCAAC+CGG | - | chr7_1:5447078-5447097 | Msa1006660:intron | 45.0% |
| ! | TAGCGTTGGAGTGCATGAAA+TGG | + | chr7_1:5447210-5447229 | None:intergenic | 45.0% |
| GAAGAAGAAGAACCTCGGAA+AGG | + | chr7_1:5447264-5447283 | None:intergenic | 45.0% | |
| !! | TGTGCTGTTAGCTTTCTTGG+TGG | - | chr7_1:5447647-5447666 | Msa1006660:intron | 45.0% |
| ! | CTGACAAACCGGTTTCAAAC+CGG | - | chr7_1:5447714-5447733 | Msa1006660:intron | 45.0% |
| !! | GTTTGGAACCGGTTTGAAAC+CGG | + | chr7_1:5447725-5447744 | None:intergenic | 45.0% |
| ! | GTTTCAAACCGGTTCCAAAC+CGG | - | chr7_1:5447725-5447744 | Msa1006660:intron | 45.0% |
| GATATGGTTCAGAACCGGTT+TGG | + | chr7_1:5447742-5447761 | None:intergenic | 45.0% | |
| TTCCGCCAGTAATACATCGT+AGG | + | chr7_1:5448021-5448040 | None:intergenic | 45.0% | |
| ACATGCCTTTGCGTTACTGA+GGG | - | chr7_1:5448065-5448084 | Msa1006660:intron | 45.0% | |
| ! | TGACGGATCTACAGCATTAC+TGG | + | chr7_1:5448133-5448152 | None:intergenic | 45.0% |
| ! | CACATGCCTTTGTGTTACTG+AGG | - | chr7_1:5448165-5448184 | Msa1006660:intron | 45.0% |
| CGGATATGTTGCATTACTGG+CGG | + | chr7_1:5448231-5448250 | None:intergenic | 45.0% | |
| ! | TGGCGGATATGTTGCATTAC+TGG | + | chr7_1:5448234-5448253 | None:intergenic | 45.0% |
| ACGGATAAGCAGACTACTGA+CGG | + | chr7_1:5448322-5448341 | None:intergenic | 45.0% | |
| GTCTGCTTATCCGTCACTAA+TGG | - | chr7_1:5448328-5448347 | Msa1006660:intron | 45.0% | |
| TGGCAATCGACCATTAGTGA+CGG | + | chr7_1:5448341-5448360 | None:intergenic | 45.0% | |
| AATAAGCGGCTGCGATTTGA+CGG | + | chr7_1:5448510-5448529 | None:intergenic | 45.0% | |
| CAAAGATGTACTGTGGGAGA+AGG | + | chr7_1:5448770-5448789 | None:intergenic | 45.0% | |
| ! | GTTCCCTGTCTAAAACGATG+GGG | + | chr7_1:5448926-5448945 | None:intergenic | 45.0% |
| !! | ATGGAGATTGGCTCTGCATT+TGG | - | chr7_1:5449329-5449348 | Msa1006660:intron | 45.0% |
| ! | CTCTGCATTTGGTTTCGGTT+TGG | - | chr7_1:5449340-5449359 | Msa1006660:intron | 45.0% |
| ! | GTTAAACCTGAGTTGAAGGG+TGG | + | chr7_1:5449875-5449894 | None:intergenic | 45.0% |
| GCTTCAAGACTCATTTCGTC+GGG | + | chr7_1:5450037-5450056 | None:intergenic | 45.0% | |
| GAATGCCTTTGACATCTTGG+TGG | - | chr7_1:5450275-5450294 | Msa1006660:intron | 45.0% | |
| GATCACCACCAAGATGTCAA+AGG | + | chr7_1:5450283-5450302 | Msa1006670:CDS | 45.0% | |
| TGGCAGTTATCTTCAAGCTG+AGG | - | chr7_1:5450356-5450375 | Msa1006660:intron | 45.0% | |
| ! | GTTGGTTGGCTCAAGTACAA+GGG | + | chr7_1:5450499-5450518 | Msa1006670:CDS | 45.0% |
| ! | TGTTGGTTGGCTCAAGTACA+AGG | + | chr7_1:5450500-5450519 | Msa1006670:CDS | 45.0% |
| !! | TTCATTTCTGGTCGAGAGCG+AGG | - | chr7_1:5446213-5446232 | Msa1006660:CDS | 50.0% |
| !! | TCATTTCTGGTCGAGAGCGA+GGG | - | chr7_1:5446214-5446233 | Msa1006660:CDS | 50.0% |
| GGGATCCTTTAACCTGCTCA+TGG | + | chr7_1:5446477-5446496 | None:intergenic | 50.0% | |
| !! | GTTCAGAACCGGTTTGGAAC+CGG | + | chr7_1:5447736-5447755 | None:intergenic | 50.0% |
| AGGCCCTCAGTAATTACTGG+CGG | - | chr7_1:5447917-5447936 | Msa1006660:intron | 50.0% | |
| CACATGCCTTTGCGTTACTG+AGG | - | chr7_1:5448064-5448083 | Msa1006660:intron | 50.0% | |
| CGGATCTACAGCATTACTGG+TGG | + | chr7_1:5448130-5448149 | None:intergenic | 50.0% | |
| GAAACAACAGTGGCGAACAG+AGG | + | chr7_1:5448486-5448505 | None:intergenic | 50.0% | |
| !! | GGTTGGCTTACCATGGCTTA+AGG | + | chr7_1:5448554-5448573 | None:intergenic | 50.0% |
| !! | GAGAATCGGTTGGCTTACCA+TGG | + | chr7_1:5448561-5448580 | None:intergenic | 50.0% |
| !! | ACTGCCCCATCGTTTTAGAC+AGG | - | chr7_1:5448919-5448938 | Msa1006660:intron | 50.0% |
| !! | CTGCCCCATCGTTTTAGACA+GGG | - | chr7_1:5448920-5448939 | Msa1006660:intron | 50.0% |
| TTGCAAGGCTACCATGACAG+TGG | - | chr7_1:5449289-5449308 | Msa1006660:intron | 50.0% | |
| TACTTAGCTCCTGAGAACGG+AGG | - | chr7_1:5449392-5449411 | Msa1006660:intron | 50.0% | |
| GTAATCAGGTGTGCCAACAG+CGG | + | chr7_1:5449441-5449460 | None:intergenic | 50.0% | |
| TTGCAGCGTATACTGCGGAT+TGG | - | chr7_1:5449807-5449826 | Msa1006660:intron | 50.0% | |
| GGTATTCCACCCTTCAACTC+AGG | - | chr7_1:5449866-5449885 | Msa1006660:intron | 50.0% | |
| CTCATTTCGTCGGGAACTTC+AGG | + | chr7_1:5450028-5450047 | None:intergenic | 50.0% | |
| CGGGAATGCCTTTGACATCT+TGG | - | chr7_1:5450272-5450291 | Msa1006660:intron | 50.0% | |
| ! | GAAGCAGCCCTTTTGTTGGT+TGG | + | chr7_1:5450513-5450532 | Msa1006670:CDS | 50.0% |
| ! | AGCTGAAGCAGCCCTTTTGT+TGG | + | chr7_1:5450517-5450536 | Msa1006670:CDS | 50.0% |
| ! | GGCAGTCTTGTACTCAAGCC+AGG | + | chr7_1:5448905-5448924 | None:intergenic | 55.0% |
| TAGCTCCTGAGAACGGAGGA+AGG | - | chr7_1:5449396-5449415 | Msa1006660:intron | 55.0% | |
| AGCTCCTGAGAACGGAGGAA+GGG | - | chr7_1:5449397-5449416 | Msa1006660:intron | 55.0% | |
| CTGAGAACGGAGGAAGGGAA+CGG | - | chr7_1:5449402-5449421 | Msa1006660:intron | 55.0% | |
| !! | AGGAAGAAGCGTTCCGCTGT+TGG | - | chr7_1:5449425-5449444 | Msa1006660:intron | 55.0% |
| !! | CAGCGTATACTGCGGATTGG+TGG | - | chr7_1:5449810-5449829 | Msa1006660:intron | 55.0% |
| !! | ACTGCGGATTGGTGGTCTGT+TGG | - | chr7_1:5449818-5449837 | Msa1006660:intron | 55.0% |
| !! | CTGCGGATTGGTGGTCTGTT+GGG | - | chr7_1:5449819-5449838 | Msa1006660:intron | 55.0% |
| !! | TGCGGATTGGTGGTCTGTTG+GGG | - | chr7_1:5449820-5449839 | Msa1006660:intron | 55.0% |
| CTGCGCTCAGTTCCTTTCCG+AGG | - | chr7_1:5447249-5447268 | Msa1006660:CDS | 60.0% | |
| CGTTCCCTTCCTCCGTTCTC+AGG | + | chr7_1:5449404-5449423 | None:intergenic | 60.0% | |
| AGAACGGAGGAAGGGAACGG+AGG | - | chr7_1:5449405-5449424 | Msa1006660:intron | 60.0% | |
| TCGTCGGGAACTTCAGGCCA+AGG | + | chr7_1:5450022-5450041 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5446135 | 5450596 | 5446135 | ID=Msa1006660;Name=Msa1006660 |
| chr7_1 | mRNA | 5446135 | 5450596 | 5446135 | ID=Msa1006660-mRNA-1;Parent=Msa1006660;Name=Msa1006660-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.4|1|0.75|0.6|5|0|235 |
| chr7_1 | exon | 5450413 | 5450596 | 5450413 | ID=Msa1006660-mRNA-1:exon:1778;Parent=Msa1006660-mRNA-1 |
| chr7_1 | exon | 5447208 | 5447332 | 5447208 | ID=Msa1006660-mRNA-1:exon:1777;Parent=Msa1006660-mRNA-1 |
| chr7_1 | exon | 5446844 | 5446918 | 5446844 | ID=Msa1006660-mRNA-1:exon:1776;Parent=Msa1006660-mRNA-1 |
| chr7_1 | exon | 5446657 | 5446745 | 5446657 | ID=Msa1006660-mRNA-1:exon:1775;Parent=Msa1006660-mRNA-1 |
| chr7_1 | exon | 5446135 | 5446369 | 5446135 | ID=Msa1006660-mRNA-1:exon:1774;Parent=Msa1006660-mRNA-1 |
| chr7_1 | CDS | 5450413 | 5450596 | 5450413 | ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1 |
| chr7_1 | CDS | 5447208 | 5447332 | 5447208 | ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1 |
| chr7_1 | CDS | 5446844 | 5446918 | 5446844 | ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1 |
| chr7_1 | CDS | 5446657 | 5446745 | 5446657 | ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1 |
| chr7_1 | CDS | 5446135 | 5446369 | 5446135 | ID=Msa1006660-mRNA-1:cds;Parent=Msa1006660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
