Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130260 | XP_003591753.1 | 95.431 | 197 | 9 | 0 | 1 | 197 | 503 | 699 | 9.00e-123 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130260 | G7I346 | 95.431 | 197 | 9 | 0 | 1 | 197 | 503 | 699 | 4.30e-123 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042180 | Msa0130260 | 0.811129 | 8.171685e-51 | -8.615850e-47 |
| Msa0084100 | Msa0130260 | 0.924262 | 8.904902e-90 | -8.615850e-47 |
| Msa0116520 | Msa0130260 | 0.812252 | 4.655229e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130260 | MtrunA17_Chr1g0198321 | 95.431 | 197 | 8 | 1 | 1 | 197 | 503 | 698 | 3.53e-125 | 368 |
| Msa0130260 | MtrunA17_Chr1g0171321 | 50.505 | 198 | 86 | 2 | 1 | 186 | 539 | 736 | 6.17e-57 | 191 |
| Msa0130260 | MtrunA17_Chr1g0181331 | 57.258 | 124 | 33 | 3 | 1 | 124 | 1 | 104 | 4.30e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130260 | AT5G04670.2 | 40.865 | 208 | 95 | 6 | 1 | 183 | 550 | 754 | 2.08e-36 | 134 |
| Msa0130260 | AT5G04670.1 | 40.865 | 208 | 95 | 6 | 1 | 183 | 550 | 754 | 2.08e-36 | 134 |
Find 147 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATAAAGATTCTTAA+AGG | 0.199469 | 1_3:+60390780 | None:intergenic |
| AACAACAACAATCAACAATA+TGG | 0.240510 | 1_3:+60393349 | None:intergenic |
| GCAATTTATGACATGGATTC+AGG | 0.243207 | 1_3:-60390593 | Msa0130260:CDS |
| TGCCTTTAAGAATCTTTATA+AGG | 0.259835 | 1_3:-60390782 | Msa0130260:five_prime_UTR |
| TTGAGTCTGACAGGTGTTAT+AGG | 0.291885 | 1_3:-60391008 | Msa0130260:five_prime_UTR |
| ATGTCTGGGTTTCTTATTAG+AGG | 0.300928 | 1_3:+60391137 | None:intergenic |
| TTACTCATGTTCTTTGTTGA+AGG | 0.301868 | 1_3:+60391216 | None:intergenic |
| AACTTACCTTGCAAAACATT+TGG | 0.307504 | 1_3:+60389942 | None:intergenic |
| TAGAAGCTGTACATGGTTAT+TGG | 0.339423 | 1_3:-60390397 | Msa0130260:CDS |
| GGAAAGCTTATAGAAGAAAA+AGG | 0.344315 | 1_3:-60392985 | Msa0130260:five_prime_UTR |
| TAATTATTATGATTAGAATA+AGG | 0.345172 | 1_3:+60388023 | None:intergenic |
| ATATATTTCGCAGCAGGAAT+TGG | 0.357826 | 1_3:+60390739 | None:intergenic |
| TTTAACATGGGTGTACCTAT+TGG | 0.360342 | 1_3:+60390861 | None:intergenic |
| CCGTCTATTTCAATAACTTC+AGG | 0.362349 | 1_3:+60391366 | None:intergenic |
| TGAATCAATTGTTGATGCTT+TGG | 0.367100 | 1_3:-60390507 | Msa0130260:CDS |
| AAGAGGGATACAATTCTTAC+AGG | 0.371182 | 1_3:-60392738 | Msa0130260:intron |
| AGGCAAACCACAACGGTGTT+TGG | 0.384459 | 1_3:-60393154 | Msa0130260:five_prime_UTR |
| GATGCATAAACAGAACAAAT+AGG | 0.390898 | 1_3:+60392761 | None:intergenic |
| GTGTTACTGTGAATTCAATT+CGG | 0.392595 | 1_3:-60393213 | Msa0130260:five_prime_UTR |
| AAACCTTGTTCTGAGGATAT+TGG | 0.398494 | 1_3:-60392875 | Msa0130260:five_prime_UTR |
| TGAGTCTGACAGGTGTTATA+GGG | 0.399315 | 1_3:-60391007 | Msa0130260:five_prime_UTR |
| AGTTTGCTAATCGTCAGAAT+TGG | 0.410244 | 1_3:-60390807 | Msa0130260:five_prime_UTR |
| TGTTACTGTGAATTCAATTC+GGG | 0.416322 | 1_3:-60393212 | Msa0130260:five_prime_UTR |
| CTCAGAAGTTTCTTTCATGA+AGG | 0.418411 | 1_3:+60391410 | None:intergenic |
| CGCTTCTATTTATTTGACTC+GGG | 0.424966 | 1_3:+60389970 | None:intergenic |
| CATTATCTTATCAGCCTTGA+GGG | 0.431408 | 1_3:+60390897 | None:intergenic |
| GAGGGAACAGAGAGAAAGAG+AGG | 0.436683 | 1_3:+60393426 | None:intergenic |
| AAAATGGTCTCATTAATCAA+TGG | 0.437286 | 1_3:-60390841 | Msa0130260:five_prime_UTR |
| TCGGAGACGTTGGCAGAATC+CGG | 0.438249 | 1_3:+60393070 | None:intergenic |
| TACGTTCAGGGCGGCAGTTA+TGG | 0.439176 | 1_3:-60393093 | Msa0130260:five_prime_UTR |
| ACAATAACCGCAATCTTACA+TGG | 0.439837 | 1_3:+60392899 | None:intergenic |
| TAGGTACACCCATGTTAAAA+TGG | 0.440716 | 1_3:-60390857 | Msa0130260:five_prime_UTR |
| TCGCTTCTATTTATTTGACT+CGG | 0.443210 | 1_3:+60389969 | None:intergenic |
| GGAGAACTTCACCTAGGATA+AGG | 0.446286 | 1_3:-60391251 | Msa0130260:five_prime_UTR |
| ATAATCATTCATCGCTGCTT+AGG | 0.449647 | 1_3:-60390358 | Msa0130260:CDS |
| CGTCCACCCTTTGAATCAAA+AGG | 0.450079 | 1_3:+60391183 | None:intergenic |
| TTCATAACGATGGCAGTGAT+AGG | 0.450747 | 1_3:-60393015 | Msa0130260:five_prime_UTR |
| TGGATTCAGGTGATGAAGAT+TGG | 0.451148 | 1_3:-60390580 | Msa0130260:CDS |
| TCAAAGTTAGCTGGTCGAAA+TGG | 0.452374 | 1_3:-60391312 | Msa0130260:five_prime_UTR |
| GGGAACAGAGAGAAAGAGAG+GGG | 0.453923 | 1_3:+60393428 | None:intergenic |
| AAATGGTCTCATTAATCAAT+GGG | 0.454696 | 1_3:-60390840 | Msa0130260:five_prime_UTR |
| GACAGGTGTTATAGGGTAGA+AGG | 0.454707 | 1_3:-60391000 | Msa0130260:five_prime_UTR |
| TCAGAAGAAACGCCCAAGTC+AGG | 0.458748 | 1_3:-60390964 | Msa0130260:five_prime_UTR |
| TGAGACCATGCTCTTCCAAT+AGG | 0.459852 | 1_3:-60390876 | Msa0130260:five_prime_UTR |
| AAGATGCCATTCTCCTGACT+TGG | 0.460644 | 1_3:+60390951 | None:intergenic |
| CGACGATCGGAGGAAGAAAC+CGG | 0.464676 | 1_3:-60393050 | Msa0130260:five_prime_UTR |
| CGTCTATTTCAATAACTTCA+GGG | 0.465966 | 1_3:+60391367 | None:intergenic |
| TTGAGAACCGTTGTGATGTT+CGG | 0.470153 | 1_3:-60392824 | Msa0130260:five_prime_UTR |
| GCAACTGTTAGTCAAATGTC+TGG | 0.470469 | 1_3:+60391122 | None:intergenic |
| GAGAACTTCACCTAGGATAA+GGG | 0.474136 | 1_3:-60391250 | Msa0130260:five_prime_UTR |
| TGTGAATTCAATTCGGGAAG+AGG | 0.474682 | 1_3:-60393206 | Msa0130260:five_prime_UTR |
| TTTGTGGATATATAAGAATC+CGG | 0.483007 | 1_3:+60390652 | None:intergenic |
| TATCACTGCCATCGTTATGA+AGG | 0.486096 | 1_3:+60393017 | None:intergenic |
| CATCTTGCAGTAAAGAAAGA+TGG | 0.486109 | 1_3:-60390934 | Msa0130260:five_prime_UTR |
| TCCTGCTGCGAAATATATTC+CGG | 0.486987 | 1_3:-60390734 | Msa0130260:five_prime_UTR |
| ATGACTGAAGCAACTCAAGC+TGG | 0.488992 | 1_3:-60388102 | Msa0130260:CDS |
| CAGTTTCTTGATTGACTGGT+AGG | 0.489008 | 1_3:-60388054 | Msa0130260:exon |
| GTTCTGTTACTGCCAACGTT+GGG | 0.489791 | 1_3:-60391650 | Msa0130260:five_prime_UTR |
| AGGACAGTTTCTTGATTGAC+TGG | 0.490167 | 1_3:-60388058 | Msa0130260:exon |
| ACAACAACAATCAACAATAT+GGG | 0.491111 | 1_3:+60393350 | None:intergenic |
| AGGGAACAGAGAGAAAGAGA+GGG | 0.493572 | 1_3:+60393427 | None:intergenic |
| CCGGACGTGTGTTACGTTCA+GGG | 0.496740 | 1_3:-60393105 | Msa0130260:five_prime_UTR |
| CAGAGCAATGACATGTAAAA+CGG | 0.496775 | 1_3:-60390615 | Msa0130260:exon |
| ATAAGAATCCGGTCGATTGA+AGG | 0.501681 | 1_3:+60390663 | None:intergenic |
| GAGGAAGCGGGAAAGAGAAG+AGG | 0.501729 | 1_3:+60393407 | None:intergenic |
| TTCTGAGCTTCCCTTATCCT+AGG | 0.502621 | 1_3:+60391240 | None:intergenic |
| ACCGGACGTGTGTTACGTTC+AGG | 0.503995 | 1_3:-60393106 | Msa0130260:five_prime_UTR |
| ATAAAATAATAAGAAGAGCT+AGG | 0.505909 | 1_3:+60387953 | None:intergenic |
| AGTGAAGGCTTGAGAACAAA+TGG | 0.505989 | 1_3:+60390020 | None:intergenic |
| TTCAGGGCGGCAGTTATGGC+CGG | 0.507992 | 1_3:-60393089 | Msa0130260:five_prime_UTR |
| TACCGTTCCCTTCAATCGAC+CGG | 0.509691 | 1_3:-60390671 | Msa0130260:five_prime_UTR |
| GCGAAATATATTCCGGTACC+AGG | 0.522760 | 1_3:-60390727 | Msa0130260:five_prime_UTR |
| GTCACGTCTTCAAAGTTAGC+TGG | 0.524696 | 1_3:-60391321 | Msa0130260:five_prime_UTR |
| TAAGAATCCGGTCGATTGAA+GGG | 0.524732 | 1_3:+60390664 | None:intergenic |
| TGACAGACTTTGCCTCTGAA+AGG | 0.525131 | 1_3:+60391088 | None:intergenic |
| TCATTATCTTATCAGCCTTG+AGG | 0.527722 | 1_3:+60390896 | None:intergenic |
| GGATTCAGGTGATGAAGATT+GGG | 0.529751 | 1_3:-60390579 | Msa0130260:CDS |
| ACCGGAATATATTTCGCAGC+AGG | 0.532423 | 1_3:+60390733 | None:intergenic |
| TGGAGGATCTGTAGATGCAT+TGG | 0.533088 | 1_3:-60388082 | Msa0130260:CDS |
| GACCTCTTCTTTCGCAGTGA+AGG | 0.533503 | 1_3:+60390005 | None:intergenic |
| CGGTTTCTTCCTCCGATCGT+CGG | 0.534589 | 1_3:+60393051 | None:intergenic |
| ACTTCACAGACGCCTGGTAC+CGG | 0.538749 | 1_3:+60390715 | None:intergenic |
| GGAGTCGTCAAAAGCGGTGG+CGG | 0.539046 | 1_3:-60393133 | Msa0130260:five_prime_UTR |
| CCCTGAACGTAACACACGTC+CGG | 0.545468 | 1_3:+60393105 | None:intergenic |
| TATTGTGAAACCTTGTTCTG+AGG | 0.546870 | 1_3:-60392882 | Msa0130260:five_prime_UTR |
| TTATGAAGGTTTGTCTTCGC+CGG | 0.549540 | 1_3:+60393031 | None:intergenic |
| ATCGATGTTTAGAGAGAGAG+AGG | 0.556765 | 1_3:+60393388 | None:intergenic |
| TGCAGATTTAGCAGTCTACA+AGG | 0.562190 | 1_3:-60388142 | Msa0130260:CDS |
| TATTGATTGTTGAGTCTGAC+AGG | 0.562502 | 1_3:-60391017 | Msa0130260:five_prime_UTR |
| ATCTTGCAGTAAAGAAAGAT+GGG | 0.562948 | 1_3:-60390933 | Msa0130260:five_prime_UTR |
| CACCGTTGTGGTTTGCCTCG+TGG | 0.564346 | 1_3:+60393159 | None:intergenic |
| GATGTTCGGTCTCACATTCG+AGG | 0.564970 | 1_3:-60392810 | Msa0130260:five_prime_UTR |
| CACAAGTTTAAACCTTTCAG+AGG | 0.565112 | 1_3:-60391100 | Msa0130260:five_prime_UTR |
| GGTTCTGTTACTGCCAACGT+TGG | 0.565488 | 1_3:-60391651 | Msa0130260:five_prime_UTR |
| AGGAAGCGGGAAAGAGAAGA+GGG | 0.566095 | 1_3:+60393408 | None:intergenic |
| TTCATTTACAGTAGCTGCTG+AGG | 0.566104 | 1_3:-60388247 | Msa0130260:intron |
| GTTGCTATTGATATTGAAGA+CGG | 0.567379 | 1_3:-60391480 | Msa0130260:five_prime_UTR |
| TAAGAATCTTGTTAGCAAGA+AGG | 0.568720 | 1_3:-60390423 | Msa0130260:CDS |
| GTTTCAAGAACATGTTTCAG+AGG | 0.568874 | 1_3:-60390537 | Msa0130260:CDS |
| GTTTGCCTCGTGGCAACCGA+TGG | 0.568919 | 1_3:+60393169 | None:intergenic |
| AGATGCCATTCTCCTGACTT+GGG | 0.569885 | 1_3:+60390952 | None:intergenic |
| CACGTCTCTACATTCTGCAG+TGG | 0.569908 | 1_3:-60391553 | Msa0130260:five_prime_UTR |
| CTGCCAACGTCTCCGACGAT+CGG | 0.572504 | 1_3:-60393063 | Msa0130260:five_prime_UTR |
| AAACGCCCAAGTCAGGAGAA+TGG | 0.572896 | 1_3:-60390957 | Msa0130260:five_prime_UTR |
| TTCAGAGGCAAAGTCTGTCA+TGG | 0.574366 | 1_3:-60391085 | Msa0130260:five_prime_UTR |
| AAAAGCGGTGGCGGAGACAC+CGG | 0.576763 | 1_3:-60393124 | Msa0130260:five_prime_UTR |
| GGATCTGTAGATGCATTGGC+AGG | 0.577953 | 1_3:-60388078 | Msa0130260:CDS |
| TGTTCTGTTTATGCATCAAG+AGG | 0.580200 | 1_3:-60392755 | Msa0130260:five_prime_UTR |
| TCAGAGACTTCACAGACGCC+TGG | 0.581949 | 1_3:+60390709 | None:intergenic |
| AGCCTTCACTGCGAAAGAAG+AGG | 0.583942 | 1_3:-60390007 | Msa0130260:CDS |
| CCTCCGATCGTCGGAGACGT+TGG | 0.584393 | 1_3:+60393060 | None:intergenic |
| GGAACAGAGAGAAAGAGAGG+GGG | 0.585999 | 1_3:+60393429 | None:intergenic |
| AGCAGCTGCAAATGAATCAA+CGG | 0.591487 | 1_3:-60388211 | Msa0130260:CDS |
| TGTAGAGACGTGAAACATTG+AGG | 0.592452 | 1_3:+60391564 | None:intergenic |
| GTCTATTTCAATAACTTCAG+GGG | 0.592740 | 1_3:+60391368 | None:intergenic |
| GGTTGAAATGCCATCACCAT+CGG | 0.595783 | 1_3:-60393185 | Msa0130260:five_prime_UTR |
| GACGACTCCAAACACCGTTG+TGG | 0.596359 | 1_3:+60393147 | None:intergenic |
| GATTCAACGACAAAGGATGA+AGG | 0.598555 | 1_3:-60392924 | Msa0130260:five_prime_UTR |
| ATGGTTATTGGATGAGAAAG+CGG | 0.601479 | 1_3:-60390385 | Msa0130260:CDS |
| TAAAACGGCAATTTATGACA+TGG | 0.604442 | 1_3:-60390600 | Msa0130260:CDS |
| CCTGAAGTTATTGAAATAGA+CGG | 0.609763 | 1_3:-60391366 | Msa0130260:five_prime_UTR |
| GAATTTAACAGAACTCGGAT+CGG | 0.609999 | 1_3:+60393263 | None:intergenic |
| CTCGTGGCAACCGATGGTGA+TGG | 0.611593 | 1_3:+60393175 | None:intergenic |
| GAGTTGAATTTAACAGAACT+CGG | 0.612213 | 1_3:+60393258 | None:intergenic |
| ACGCTCGACGCATTCAGATG+AGG | 0.612215 | 1_3:-60391272 | Msa0130260:five_prime_UTR |
| GTTGACTCAATGCACCCTCA+AGG | 0.616453 | 1_3:-60390911 | Msa0130260:five_prime_UTR |
| GTTCTGTTTATGCATCAAGA+GGG | 0.617668 | 1_3:-60392754 | Msa0130260:five_prime_UTR |
| TTTGGAGTCGTCAAAAGCGG+TGG | 0.622444 | 1_3:-60393136 | Msa0130260:five_prime_UTR |
| GTTACTGAGTTGAATTAACT+CGG | 0.623717 | 1_3:-60393235 | Msa0130260:five_prime_UTR |
| CAACTGTTAGTCAAATGTCT+GGG | 0.632312 | 1_3:+60391123 | None:intergenic |
| CCAACGTCTCCGACGATCGG+AGG | 0.634193 | 1_3:-60393060 | Msa0130260:five_prime_UTR |
| TGGTCTCATTAATCAATGGG+TGG | 0.640024 | 1_3:-60390837 | Msa0130260:five_prime_UTR |
| AAGGCTGTAGAAGCTGTACA+TGG | 0.640142 | 1_3:-60390404 | Msa0130260:CDS |
| ATCCGGTCGATTGAAGGGAA+CGG | 0.652409 | 1_3:+60390669 | None:intergenic |
| AAACCAATATCCTCAGAACA+AGG | 0.653855 | 1_3:+60392872 | None:intergenic |
| ACTATATTAATCATATAACC+CGG | 0.655191 | 1_3:-60388001 | Msa0130260:three_prime_UTR |
| GTGTACCTATTGGAAGAGCA+TGG | 0.656582 | 1_3:+60390871 | None:intergenic |
| ACTGAAGCAACTCAAGCTGG+AGG | 0.660051 | 1_3:-60388099 | Msa0130260:CDS |
| AAACTGGCAAATCCCAACGT+TGG | 0.662902 | 1_3:+60391638 | None:intergenic |
| GAAGGATCCATGTAAGATTG+CGG | 0.664528 | 1_3:-60392906 | Msa0130260:five_prime_UTR |
| GTGTTTGGAGTCGTCAAAAG+CGG | 0.665956 | 1_3:-60393139 | Msa0130260:five_prime_UTR |
| AGATGAGGAGAACTTCACCT+AGG | 0.682586 | 1_3:-60391257 | Msa0130260:five_prime_UTR |
| AAGACAAACCTTCATAACGA+TGG | 0.687315 | 1_3:-60393025 | Msa0130260:five_prime_UTR |
| CATCACCATCGGTTGCCACG+AGG | 0.704977 | 1_3:-60393174 | Msa0130260:five_prime_UTR |
| TGCCACGAGGCAAACCACAA+CGG | 0.717744 | 1_3:-60393161 | Msa0130260:five_prime_UTR |
| TGTGAGACCGAACATCACAA+CGG | 0.753251 | 1_3:+60392817 | None:intergenic |
| GACGTGTGTTACGTTCAGGG+CGG | 0.770842 | 1_3:-60393102 | Msa0130260:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAAAAAAAAAA+AGG | + | chr1_3:60391654-60391673 | None:intergenic | 0.0% |
| !! | TTTAAAAAAAAAAAATTAAA+AGG | - | chr1_3:60392540-60392559 | Msa0130260:intron | 0.0% |
| !! | TAATTATTATGATTAGAATA+AGG | + | chr1_3:60393295-60393314 | None:intergenic | 10.0% |
| !! | TGCATTAAAAACATAATATA+AGG | + | chr1_3:60388827-60388846 | None:intergenic | 15.0% |
| !!! | TTTTATTTATTTTTTGACAG+TGG | - | chr1_3:60388926-60388945 | Msa0130260:intron | 15.0% |
| !!! | TTTTGTCAAATTAATATCTT+TGG | - | chr1_3:60388956-60388975 | Msa0130260:intron | 15.0% |
| !! | ACAATAAATAAATAACTGTA+GGG | + | chr1_3:60389043-60389062 | None:intergenic | 15.0% |
| !! | TACAATAAATAAATAACTGT+AGG | + | chr1_3:60389044-60389063 | None:intergenic | 15.0% |
| !! | TTTATGGTAAAAAAAATTAC+AGG | - | chr1_3:60389072-60389091 | Msa0130260:intron | 15.0% |
| !! | TTATGGTAAAAAAAATTACA+GGG | - | chr1_3:60389073-60389092 | Msa0130260:intron | 15.0% |
| !! | TCACTACATTTATTTATTTA+TGG | - | chr1_3:60389195-60389214 | Msa0130260:intron | 15.0% |
| !! | TTATGGCAATTTATTATTTA+TGG | - | chr1_3:60389212-60389231 | Msa0130260:intron | 15.0% |
| !! | ATTTATGGTAAAAAAATAAG+TGG | - | chr1_3:60389227-60389246 | Msa0130260:intron | 15.0% |
| !! | TTTATGGTAAAAAAATAAGT+GGG | - | chr1_3:60389228-60389247 | Msa0130260:intron | 15.0% |
| !!! | TTTAATTTTTTTCCTGTAAA+TGG | - | chr1_3:60389261-60389280 | Msa0130260:intron | 15.0% |
| !!! | TTAATTTTTTTCCTGTAAAT+GGG | - | chr1_3:60389262-60389281 | Msa0130260:intron | 15.0% |
| !!! | TTTGATTTCTTTTTCAATTT+CGG | - | chr1_3:60391107-60391126 | Msa0130260:five_prime_UTR | 15.0% |
| !! | TATTATTTCATATTGTTAAC+AGG | - | chr1_3:60391399-60391418 | Msa0130260:five_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAGGATGATAT+AGG | + | chr1_3:60391644-60391663 | None:intergenic | 15.0% |
| !! | AAACGATATAAACAAAAAAT+AGG | + | chr1_3:60391824-60391843 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTCTTTTTTTT+GGG | + | chr1_3:60392296-60392315 | None:intergenic | 15.0% |
| !!! | TCTGATGTTTTTTATTTTGT+TGG | - | chr1_3:60388636-60388655 | Msa0130260:intron | 20.0% |
| !! | TGTAATGAATTGTAAATTGA+TGG | - | chr1_3:60388883-60388902 | Msa0130260:intron | 20.0% |
| !!! | CTTTGTTGATTTAATATCTA+TGG | - | chr1_3:60389113-60389132 | Msa0130260:intron | 20.0% |
| !! | TTATGGTAAAAAAATAAGTG+GGG | - | chr1_3:60389229-60389248 | Msa0130260:intron | 20.0% |
| !! | TTACAGGAAAAAAATTAAAC+AGG | + | chr1_3:60389260-60389279 | None:intergenic | 20.0% |
| !!! | CAATGTATGATATTGATTTT+TGG | - | chr1_3:60389470-60389489 | Msa0130260:intron | 20.0% |
| !!! | GTTTTATAATTCATTGAGAT+TGG | - | chr1_3:60389511-60389530 | Msa0130260:intron | 20.0% |
| !! | TAAGTTGTATATATTACGAA+AGG | - | chr1_3:60389540-60389559 | Msa0130260:intron | 20.0% |
| !! | ATGAAAAAACTGTGATTTAT+TGG | - | chr1_3:60390867-60390886 | Msa0130260:five_prime_UTR | 20.0% |
| !! | AAAAAAAACCAAAACTATGA+CGG | + | chr1_3:60391245-60391264 | None:intergenic | 20.0% |
| !! | AACAAGTAGATAAATATTAG+AGG | + | chr1_3:60392204-60392223 | None:intergenic | 20.0% |
| !!! | ATTTATCTACTTGTTTTTAG+AGG | - | chr1_3:60392209-60392228 | Msa0130260:intron | 20.0% |
| !!! | CTTTTTTTCTCTCTTTTTTT+TGG | + | chr1_3:60392297-60392316 | None:intergenic | 20.0% |
| !! | CAAAAAAAAGAGAGAAAAAA+AGG | - | chr1_3:60392295-60392314 | Msa0130260:intron | 20.0% |
| !! | AAAATTAAAAGGTCAAGATA+TGG | - | chr1_3:60392551-60392570 | Msa0130260:intron | 20.0% |
| !!! | CAAGATACTTTTATTGTTTT+TGG | - | chr1_3:60392900-60392919 | Msa0130260:five_prime_UTR | 20.0% |
| !!! | TTTGAGTTGACTATAAAAAA+AGG | - | chr1_3:60392972-60392991 | Msa0130260:five_prime_UTR | 20.0% |
| !! | TATACATGTAATTAAACACT+CGG | + | chr1_3:60393001-60393020 | None:intergenic | 20.0% |
| !! | ACTATATTAATCATATAACC+CGG | - | chr1_3:60393314-60393333 | Msa0130260:five_prime_UTR | 20.0% |
| !! | ATAAAATAATAAGAAGAGCT+AGG | + | chr1_3:60393365-60393384 | None:intergenic | 20.0% |
| ! | ACAACAACAATCAACAATAT+GGG | + | chr1_3:60387968-60387987 | None:intergenic | 25.0% |
| ! | AACAACAACAATCAACAATA+TGG | + | chr1_3:60387969-60387988 | None:intergenic | 25.0% |
| !!! | GTTTTCGTGTTTCTTATTTA+TGG | - | chr1_3:60388466-60388485 | Msa0130260:intron | 25.0% |
| !!! | TATTTATTTTTTGACAGTGG+TGG | - | chr1_3:60388929-60388948 | Msa0130260:intron | 25.0% |
| ! | AAATAAATAACTGTAGGGTT+AGG | + | chr1_3:60389038-60389057 | None:intergenic | 25.0% |
| ! | ACTTTGACCAAAAAAACAAA+TGG | - | chr1_3:60389343-60389362 | Msa0130260:intron | 25.0% |
| !!! | TACTACTCCATTTGTTTTTT+TGG | + | chr1_3:60389353-60389372 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTCTTTCA+GGG | - | chr1_3:60389643-60389662 | Msa0130260:intron | 25.0% |
| ! | GAAAAATCTACACAAAACAA+TGG | + | chr1_3:60389724-60389743 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGATATATGTTC+AGG | - | chr1_3:60389782-60389801 | Msa0130260:intron | 25.0% |
| !!! | ATTTTTTCTTGCATGTAATC+TGG | - | chr1_3:60389807-60389826 | Msa0130260:intron | 25.0% |
| !!! | GAATTACCTTTTGATTCAAA+GGG | - | chr1_3:60390126-60390145 | Msa0130260:intron | 25.0% |
| !!! | TAATGAGACCATTTTAACAT+GGG | + | chr1_3:60390469-60390488 | None:intergenic | 25.0% |
| !!! | TTAATGAGACCATTTTAACA+TGG | + | chr1_3:60390470-60390489 | None:intergenic | 25.0% |
| ! | AAAATGGTCTCATTAATCAA+TGG | - | chr1_3:60390474-60390493 | Msa0130260:CDS | 25.0% |
| ! | AAATGGTCTCATTAATCAAT+GGG | - | chr1_3:60390475-60390494 | Msa0130260:CDS | 25.0% |
| !! | TGCCTTTAAGAATCTTTATA+AGG | - | chr1_3:60390533-60390552 | Msa0130260:CDS | 25.0% |
| ! | CTCCTTATAAAGATTCTTAA+AGG | + | chr1_3:60390538-60390557 | None:intergenic | 25.0% |
| ! | TTTGTGGATATATAAGAATC+CGG | + | chr1_3:60390666-60390685 | None:intergenic | 25.0% |
| !!! | AATTGAGCATTGAAATGTTT+CGG | + | chr1_3:60391025-60391044 | None:intergenic | 25.0% |
| !! | TTTATTAGTTTGAGCTGTTA+AGG | - | chr1_3:60391140-60391159 | Msa0130260:five_prime_UTR | 25.0% |
| !!! | GTTTTTGGTATTTTAACTTG+TGG | - | chr1_3:60391478-60391497 | Msa0130260:five_prime_UTR | 25.0% |
| !! | ACTAATAATCTAGAGTTTGA+CGG | - | chr1_3:60391700-60391719 | Msa0130260:intron | 25.0% |
| !! | TAAATGTTTTCAAACTCCTT+TGG | + | chr1_3:60391772-60391791 | None:intergenic | 25.0% |
| ! | CATTTAATGATAAAGAGTGA+TGG | - | chr1_3:60391786-60391805 | Msa0130260:intron | 25.0% |
| ! | ATAAACAAAAAATAGGCAGT+GGG | + | chr1_3:60391817-60391836 | None:intergenic | 25.0% |
| ! | TATAAACAAAAAATAGGCAG+TGG | + | chr1_3:60391818-60391837 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAAAATAGGCCA+AGG | + | chr1_3:60391914-60391933 | None:intergenic | 25.0% |
| ! | GAGGGAAAAGAAAAAAAAAT+AGG | + | chr1_3:60391920-60391939 | None:intergenic | 25.0% |
| ! | GTTTAAAAACAATTGAGAGA+AGG | - | chr1_3:60392383-60392402 | Msa0130260:intron | 25.0% |
| ! | CTACAAAGGAAAAAATTTGT+AGG | + | chr1_3:60392471-60392490 | None:intergenic | 25.0% |
| !!! | CTACAAATTTTTTCCTTTGT+AGG | - | chr1_3:60392469-60392488 | Msa0130260:intron | 25.0% |
| !! | ATAATTACATGAAGCATTAG+AGG | + | chr1_3:60392800-60392819 | None:intergenic | 25.0% |
| ! | TATGAAATGAGATCTTGAAT+TGG | - | chr1_3:60392841-60392860 | Msa0130260:five_prime_UTR | 25.0% |
| !!! | TGTTTTTGGATTATTGTTTC+TGG | - | chr1_3:60392914-60392933 | Msa0130260:five_prime_UTR | 25.0% |
| !!! | GTTTTTGGATTATTGTTTCT+GGG | - | chr1_3:60392915-60392934 | Msa0130260:five_prime_UTR | 25.0% |
| ! | TCTTAATACAGTATCTTGTT+TGG | - | chr1_3:60392945-60392964 | Msa0130260:five_prime_UTR | 25.0% |
| ! | ATTGTATATGTGTCTATAGA+TGG | - | chr1_3:60393020-60393039 | Msa0130260:five_prime_UTR | 25.0% |
| ! | TACTGTAAATGAATAGATCA+GGG | + | chr1_3:60393061-60393080 | None:intergenic | 25.0% |
| GAGTTGAATTTAACAGAACT+CGG | + | chr1_3:60388060-60388079 | None:intergenic | 30.0% | |
| ! | GTTACTGAGTTGAATTAACT+CGG | - | chr1_3:60388080-60388099 | Msa0130260:CDS | 30.0% |
| ! | GTGTTACTGTGAATTCAATT+CGG | - | chr1_3:60388102-60388121 | Msa0130260:CDS | 30.0% |
| TGTTACTGTGAATTCAATTC+GGG | - | chr1_3:60388103-60388122 | Msa0130260:CDS | 30.0% | |
| GGAAAGCTTATAGAAGAAAA+AGG | - | chr1_3:60388330-60388349 | Msa0130260:intron | 30.0% | |
| ! | ACAACGAAAGTGAAATTTTC+AGG | - | chr1_3:60388369-60388388 | Msa0130260:intron | 30.0% |
| GATGCATAAACAGAACAAAT+AGG | + | chr1_3:60388557-60388576 | None:intergenic | 30.0% | |
| GACAAACTAAGCATAATTCA+AGG | + | chr1_3:60388616-60388635 | None:intergenic | 30.0% | |
| AAAAATTACAGGGTGATTAG+TGG | - | chr1_3:60389083-60389102 | Msa0130260:intron | 30.0% | |
| !!! | ATTTTTTTCCTGTAAATGGG+TGG | - | chr1_3:60389265-60389284 | Msa0130260:intron | 30.0% |
| TCAATAGTTGTAATCTGCTA+AGG | - | chr1_3:60389412-60389431 | Msa0130260:intron | 30.0% | |
| CAATAGTTGTAATCTGCTAA+GGG | - | chr1_3:60389413-60389432 | Msa0130260:intron | 30.0% | |
| AATAGTTGTAATCTGCTAAG+GGG | - | chr1_3:60389414-60389433 | Msa0130260:intron | 30.0% | |
| GTAAGATCAAGGTGTAAATT+AGG | + | chr1_3:60389618-60389637 | None:intergenic | 30.0% | |
| ACTCATGTTATGTAAGATCA+AGG | + | chr1_3:60389629-60389648 | None:intergenic | 30.0% | |
| CATGAGTTTAATGTTCTTTC+AGG | - | chr1_3:60389642-60389661 | Msa0130260:intron | 30.0% | |
| ! | GTTGCTATTGATATTGAAGA+CGG | - | chr1_3:60389835-60389854 | Msa0130260:intron | 30.0% |
| !! | TGATCTATCAGATTTTGAGA+TGG | - | chr1_3:60389861-60389880 | Msa0130260:intron | 30.0% |
| GTCTATTTCAATAACTTCAG+GGG | + | chr1_3:60389950-60389969 | None:intergenic | 30.0% | |
| CGTCTATTTCAATAACTTCA+GGG | + | chr1_3:60389951-60389970 | None:intergenic | 30.0% | |
| CCTGAAGTTATTGAAATAGA+CGG | - | chr1_3:60389949-60389968 | Msa0130260:CDS | 30.0% | |
| TTACTCATGTTCTTTGTTGA+AGG | + | chr1_3:60390102-60390121 | None:intergenic | 30.0% | |
| !! | CGAATTACCTTTTGATTCAA+AGG | - | chr1_3:60390125-60390144 | Msa0130260:intron | 30.0% |
| ATCTTGCAGTAAAGAAAGAT+GGG | - | chr1_3:60390382-60390401 | Msa0130260:CDS | 30.0% | |
| !! | TGTAAAACTCATCACTTTTG+TGG | + | chr1_3:60390682-60390701 | None:intergenic | 30.0% |
| TAAAACGGCAATTTATGACA+TGG | - | chr1_3:60390715-60390734 | Msa0130260:five_prime_UTR | 30.0% | |
| TGAATCAATTGTTGATGCTT+TGG | - | chr1_3:60390808-60390827 | Msa0130260:five_prime_UTR | 30.0% | |
| TAAGAATCTTGTTAGCAAGA+AGG | - | chr1_3:60390892-60390911 | Msa0130260:five_prime_UTR | 30.0% | |
| ! | TGTCTATTTCGATTTTCGAA+AGG | + | chr1_3:60391070-60391089 | None:intergenic | 30.0% |
| !! | TCGAAATAGACAAGTTTTGT+TGG | - | chr1_3:60391078-60391097 | Msa0130260:five_prime_UTR | 30.0% |
| TCGCTTCTATTTATTTGACT+CGG | + | chr1_3:60391349-60391368 | None:intergenic | 30.0% | |
| ! | GAAAATCCAAATGTTTTGCA+AGG | - | chr1_3:60391367-60391386 | Msa0130260:five_prime_UTR | 30.0% |
| AACTTACCTTGCAAAACATT+TGG | + | chr1_3:60391376-60391395 | None:intergenic | 30.0% | |
| TATATTTGTGTTGCATAAGG+TGG | + | chr1_3:60391555-60391574 | None:intergenic | 30.0% | |
| CTGTATATTTGTGTTGCATA+AGG | + | chr1_3:60391558-60391577 | None:intergenic | 30.0% | |
| ! | CTAATAATCTAGAGTTTGAC+GGG | - | chr1_3:60391701-60391720 | Msa0130260:intron | 30.0% |
| ATCCAATCCCAAAAAATCTT+CGG | + | chr1_3:60391744-60391763 | None:intergenic | 30.0% | |
| TTAATGATAAAGAGTGATGG+TGG | - | chr1_3:60391789-60391808 | Msa0130260:intron | 30.0% | |
| TAATGATAAAGAGTGATGGT+GGG | - | chr1_3:60391790-60391809 | Msa0130260:intron | 30.0% | |
| ! | TTCTTTTCCCTCTAATAGTT+CGG | - | chr1_3:60391928-60391947 | Msa0130260:intron | 30.0% |
| AGAGAAAAAAAGGAAGCAAA+TGG | - | chr1_3:60392305-60392324 | Msa0130260:intron | 30.0% | |
| ATGGAGTAACAAAATTGTGT+AGG | - | chr1_3:60392324-60392343 | Msa0130260:intron | 30.0% | |
| AACATAAATTAGTCCCACAT+CGG | - | chr1_3:60392357-60392376 | Msa0130260:intron | 30.0% | |
| ! | TTTAAAGTTCACGAACAACT+CGG | + | chr1_3:60392655-60392674 | None:intergenic | 30.0% |
| !!! | CCTATTTTTTAACTCGAGTT+CGG | + | chr1_3:60392682-60392701 | None:intergenic | 30.0% |
| CTACTGTAAATGAATAGATC+AGG | + | chr1_3:60393062-60393081 | None:intergenic | 30.0% | |
| GAATTTAACAGAACTCGGAT+CGG | + | chr1_3:60388055-60388074 | None:intergenic | 35.0% | |
| AAGACAAACCTTCATAACGA+TGG | - | chr1_3:60388290-60388309 | Msa0130260:intron | 35.0% | |
| !! | TTTTCAGGATTCAACGACAA+AGG | - | chr1_3:60388384-60388403 | Msa0130260:intron | 35.0% |
| ACAATAACCGCAATCTTACA+TGG | + | chr1_3:60388419-60388438 | None:intergenic | 35.0% | |
| TATTGTGAAACCTTGTTCTG+AGG | - | chr1_3:60388433-60388452 | Msa0130260:intron | 35.0% | |
| !! | AAACCTTGTTCTGAGGATAT+TGG | - | chr1_3:60388440-60388459 | Msa0130260:intron | 35.0% |
| AAACCAATATCCTCAGAACA+AGG | + | chr1_3:60388446-60388465 | None:intergenic | 35.0% | |
| TGTTCTGTTTATGCATCAAG+AGG | - | chr1_3:60388560-60388579 | Msa0130260:intron | 35.0% | |
| GTTCTGTTTATGCATCAAGA+GGG | - | chr1_3:60388561-60388580 | Msa0130260:intron | 35.0% | |
| AAGAGGGATACAATTCTTAC+AGG | - | chr1_3:60388577-60388596 | Msa0130260:intron | 35.0% | |
| AATCTATTTAATTCCCCTCG+AGG | - | chr1_3:60388858-60388877 | Msa0130260:intron | 35.0% | |
| AATTCATTACAAACCTCGAG+GGG | + | chr1_3:60388874-60388893 | None:intergenic | 35.0% | |
| CAATTCATTACAAACCTCGA+GGG | + | chr1_3:60388875-60388894 | None:intergenic | 35.0% | |
| ACAATTCATTACAAACCTCG+AGG | + | chr1_3:60388876-60388895 | None:intergenic | 35.0% | |
| AAGAGCAAGAGTAAATCAAG+TGG | + | chr1_3:60389448-60389467 | None:intergenic | 35.0% | |
| !!! | TTGGGATTTGCCAGTTTTTT+GGG | - | chr1_3:60389683-60389702 | Msa0130260:intron | 35.0% |
| CTCAGAAGTTTCTTTCATGA+AGG | + | chr1_3:60389908-60389927 | None:intergenic | 35.0% | |
| CCGTCTATTTCAATAACTTC+AGG | + | chr1_3:60389952-60389971 | None:intergenic | 35.0% | |
| !! | TTACCTTTTGATTCAAAGGG+TGG | - | chr1_3:60390129-60390148 | Msa0130260:intron | 35.0% |
| ATGTCTGGGTTTCTTATTAG+AGG | + | chr1_3:60390181-60390200 | None:intergenic | 35.0% | |
| CAACTGTTAGTCAAATGTCT+GGG | + | chr1_3:60390195-60390214 | None:intergenic | 35.0% | |
| CACAAGTTTAAACCTTTCAG+AGG | - | chr1_3:60390215-60390234 | Msa0130260:intron | 35.0% | |
| ! | TATTGATTGTTGAGTCTGAC+AGG | - | chr1_3:60390298-60390317 | Msa0130260:intron | 35.0% |
| CATCTTGCAGTAAAGAAAGA+TGG | - | chr1_3:60390381-60390400 | Msa0130260:CDS | 35.0% | |
| CATTATCTTATCAGCCTTGA+GGG | + | chr1_3:60390421-60390440 | None:intergenic | 35.0% | |
| TCATTATCTTATCAGCCTTG+AGG | + | chr1_3:60390422-60390441 | None:intergenic | 35.0% | |
| TTTAACATGGGTGTACCTAT+TGG | + | chr1_3:60390457-60390476 | None:intergenic | 35.0% | |
| TAGGTACACCCATGTTAAAA+TGG | - | chr1_3:60390458-60390477 | Msa0130260:CDS | 35.0% | |
| !! | AGTTTGCTAATCGTCAGAAT+TGG | - | chr1_3:60390508-60390527 | Msa0130260:CDS | 35.0% |
| ATATATTTCGCAGCAGGAAT+TGG | + | chr1_3:60390579-60390598 | None:intergenic | 35.0% | |
| CAGAGCAATGACATGTAAAA+CGG | - | chr1_3:60390700-60390719 | Msa0130260:five_prime_UTR | 35.0% | |
| GCAATTTATGACATGGATTC+AGG | - | chr1_3:60390722-60390741 | Msa0130260:five_prime_UTR | 35.0% | |
| GTTTCAAGAACATGTTTCAG+AGG | - | chr1_3:60390778-60390797 | Msa0130260:five_prime_UTR | 35.0% | |
| ! | TTTTCATCACAACAGTCATC+TGG | + | chr1_3:60390854-60390873 | None:intergenic | 35.0% |
| TAGAAGCTGTACATGGTTAT+TGG | - | chr1_3:60390918-60390937 | Msa0130260:five_prime_UTR | 35.0% | |
| ATGGTTATTGGATGAGAAAG+CGG | - | chr1_3:60390930-60390949 | Msa0130260:five_prime_UTR | 35.0% | |
| ATAATCATTCATCGCTGCTT+AGG | - | chr1_3:60390957-60390976 | Msa0130260:five_prime_UTR | 35.0% | |
| ! | TTATCTGACCGTCATAGTTT+TGG | - | chr1_3:60391234-60391253 | Msa0130260:five_prime_UTR | 35.0% |
| CGCTTCTATTTATTTGACTC+GGG | + | chr1_3:60391348-60391367 | None:intergenic | 35.0% | |
| AAAATCTTCGGCCATACTTT+AGG | + | chr1_3:60391732-60391751 | None:intergenic | 35.0% | |
| !!! | AAGTATGGCCGAAGATTTTT+TGG | - | chr1_3:60391733-60391752 | Msa0130260:intron | 35.0% |
| !!! | AGTATGGCCGAAGATTTTTT+GGG | - | chr1_3:60391734-60391753 | Msa0130260:intron | 35.0% |
| !! | AAGTTCAACGGGTTAATTGT+CGG | + | chr1_3:60391962-60391981 | None:intergenic | 35.0% |
| ACATAAATTAGTCCCACATC+GGG | - | chr1_3:60392358-60392377 | Msa0130260:intron | 35.0% | |
| TGTTTGTCTTAAGCCTACAA+AGG | + | chr1_3:60392485-60392504 | None:intergenic | 35.0% | |
| CCGAACTCGAGTTAAAAAAT+AGG | - | chr1_3:60392679-60392698 | Msa0130260:intron | 35.0% | |
| ! | TACATGAAGCATTAGAGGTA+GGG | + | chr1_3:60392795-60392814 | None:intergenic | 35.0% |
| ! | TTACATGAAGCATTAGAGGT+AGG | + | chr1_3:60392796-60392815 | None:intergenic | 35.0% |
| ! | TCTTTTCTGCAATGAAAACC+GGG | + | chr1_3:60393335-60393354 | None:intergenic | 35.0% |
| ! | CTCTTTTCTGCAATGAAAAC+CGG | + | chr1_3:60393336-60393355 | None:intergenic | 35.0% |
| ATCGATGTTTAGAGAGAGAG+AGG | + | chr1_3:60387930-60387949 | None:intergenic | 40.0% | |
| TGTGAATTCAATTCGGGAAG+AGG | - | chr1_3:60388109-60388128 | Msa0130260:CDS | 40.0% | |
| TTATGAAGGTTTGTCTTCGC+CGG | + | chr1_3:60388287-60388306 | None:intergenic | 40.0% | |
| TATCACTGCCATCGTTATGA+AGG | + | chr1_3:60388301-60388320 | None:intergenic | 40.0% | |
| TTCATAACGATGGCAGTGAT+AGG | - | chr1_3:60388300-60388319 | Msa0130260:intron | 40.0% | |
| ! | GATGGCAGTGATAGGTTTTA+CGG | - | chr1_3:60388308-60388327 | Msa0130260:intron | 40.0% |
| ! | ATGGCAGTGATAGGTTTTAC+GGG | - | chr1_3:60388309-60388328 | Msa0130260:intron | 40.0% |
| GATTCAACGACAAAGGATGA+AGG | - | chr1_3:60388391-60388410 | Msa0130260:intron | 40.0% | |
| GAAGGATCCATGTAAGATTG+CGG | - | chr1_3:60388409-60388428 | Msa0130260:intron | 40.0% | |
| TTGAGAACCGTTGTGATGTT+CGG | - | chr1_3:60388491-60388510 | Msa0130260:intron | 40.0% | |
| GTAAATTGATGGAAACTGCG+TGG | - | chr1_3:60388894-60388913 | Msa0130260:intron | 40.0% | |
| AATTACAGGGTGATTAGTGG+TGG | - | chr1_3:60389086-60389105 | Msa0130260:intron | 40.0% | |
| AGCAAGAGTAAATCAAGTGG+TGG | + | chr1_3:60389445-60389464 | None:intergenic | 40.0% | |
| !!! | GTTGGGATTTGCCAGTTTTT+TGG | - | chr1_3:60389682-60389701 | Msa0130260:intron | 40.0% |
| !!! | TGGGATTTGCCAGTTTTTTG+GGG | - | chr1_3:60389684-60389703 | Msa0130260:intron | 40.0% |
| TGTAGAGACGTGAAACATTG+AGG | + | chr1_3:60389754-60389773 | None:intergenic | 40.0% | |
| TCAAAGTTAGCTGGTCGAAA+TGG | - | chr1_3:60390003-60390022 | Msa0130260:CDS | 40.0% | |
| GAGAACTTCACCTAGGATAA+GGG | - | chr1_3:60390065-60390084 | Msa0130260:intron | 40.0% | |
| !! | CTTTTGATTCAAAGGGTGGA+CGG | - | chr1_3:60390133-60390152 | Msa0130260:intron | 40.0% |
| !! | TTTTGATTCAAAGGGTGGAC+GGG | - | chr1_3:60390134-60390153 | Msa0130260:intron | 40.0% |
| GCAACTGTTAGTCAAATGTC+TGG | + | chr1_3:60390196-60390215 | None:intergenic | 40.0% | |
| ! | TTGAGTCTGACAGGTGTTAT+AGG | - | chr1_3:60390307-60390326 | Msa0130260:intron | 40.0% |
| ! | TGAGTCTGACAGGTGTTATA+GGG | - | chr1_3:60390308-60390327 | Msa0130260:intron | 40.0% |
| TGGTCTCATTAATCAATGGG+TGG | - | chr1_3:60390478-60390497 | Msa0130260:CDS | 40.0% | |
| TCCTGCTGCGAAATATATTC+CGG | - | chr1_3:60390581-60390600 | Msa0130260:CDS | 40.0% | |
| TAAGAATCCGGTCGATTGAA+GGG | + | chr1_3:60390654-60390673 | None:intergenic | 40.0% | |
| ATAAGAATCCGGTCGATTGA+AGG | + | chr1_3:60390655-60390674 | None:intergenic | 40.0% | |
| TGGATTCAGGTGATGAAGAT+TGG | - | chr1_3:60390735-60390754 | Msa0130260:five_prime_UTR | 40.0% | |
| GGATTCAGGTGATGAAGATT+GGG | - | chr1_3:60390736-60390755 | Msa0130260:five_prime_UTR | 40.0% | |
| AAAGCAAGCAGTGCAACAAT+GGG | + | chr1_3:60391000-60391019 | None:intergenic | 40.0% | |
| TAAAGCAAGCAGTGCAACAA+TGG | + | chr1_3:60391001-60391020 | None:intergenic | 40.0% | |
| CTGTTAAGGCGATGTATATC+TGG | - | chr1_3:60391154-60391173 | Msa0130260:five_prime_UTR | 40.0% | |
| ! | TAGTCTCTTGAACTCTGGAA+GGG | - | chr1_3:60391177-60391196 | Msa0130260:five_prime_UTR | 40.0% |
| AGTGAAGGCTTGAGAACAAA+TGG | + | chr1_3:60391298-60391317 | None:intergenic | 40.0% | |
| ! | TTTAACCCTCCCGTTTTCAA+AGG | - | chr1_3:60391669-60391688 | Msa0130260:intron | 40.0% |
| ! | TGTCTGCTTCCTTTGAAAAC+GGG | + | chr1_3:60391681-60391700 | None:intergenic | 40.0% |
| ! | GTGTCTGCTTCCTTTGAAAA+CGG | + | chr1_3:60391682-60391701 | None:intergenic | 40.0% |
| !! | GTTTTCAAACTCCTTTGGAG+AGG | + | chr1_3:60391767-60391786 | None:intergenic | 40.0% |
| TCACAACTCAGATTGTTCCT+TGG | - | chr1_3:60391894-60391913 | Msa0130260:intron | 40.0% | |
| TCGAGTTCCGAACTATTAGA+GGG | + | chr1_3:60391938-60391957 | None:intergenic | 40.0% | |
| ATCGAGTTCCGAACTATTAG+AGG | + | chr1_3:60391939-60391958 | None:intergenic | 40.0% | |
| GACAATTAACCCGTTGAACT+TGG | - | chr1_3:60391961-60391980 | Msa0130260:intron | 40.0% | |
| GTTCATGAACCAAGTTCAAC+GGG | + | chr1_3:60391973-60391992 | None:intergenic | 40.0% | |
| GGTTCATGAACCAAGTTCAA+CGG | + | chr1_3:60391974-60391993 | None:intergenic | 40.0% | |
| ! | TGCATATAGTTCGACTCGAT+TGG | - | chr1_3:60392053-60392072 | Msa0130260:intron | 40.0% |
| CATAAATTAGTCCCACATCG+GGG | - | chr1_3:60392359-60392378 | Msa0130260:intron | 40.0% | |
| ! | GTTTTTAAACTCCCCGATGT+GGG | + | chr1_3:60392373-60392392 | None:intergenic | 40.0% |
| !! | TGTTTTTAAACTCCCCGATG+TGG | + | chr1_3:60392374-60392393 | None:intergenic | 40.0% |
| TTCATTTACAGTAGCTGCTG+AGG | - | chr1_3:60393068-60393087 | Msa0130260:five_prime_UTR | 40.0% | |
| AGCAGCTGCAAATGAATCAA+CGG | - | chr1_3:60393104-60393123 | Msa0130260:five_prime_UTR | 40.0% | |
| TGCAGATTTAGCAGTCTACA+AGG | - | chr1_3:60393173-60393192 | Msa0130260:five_prime_UTR | 40.0% | |
| AGGACAGTTTCTTGATTGAC+TGG | - | chr1_3:60393257-60393276 | Msa0130260:five_prime_UTR | 40.0% | |
| CAGTTTCTTGATTGACTGGT+AGG | - | chr1_3:60393261-60393280 | Msa0130260:five_prime_UTR | 40.0% | |
| ! | CGGTTTTCATTGCAGAAAAG+AGG | - | chr1_3:60393334-60393353 | Msa0130260:five_prime_UTR | 40.0% |
| TTTAGAGAGAGAGAGGAAGC+GGG | + | chr1_3:60387923-60387942 | None:intergenic | 45.0% | |
| GTTTAGAGAGAGAGAGGAAG+CGG | + | chr1_3:60387924-60387943 | None:intergenic | 45.0% | |
| GGTTGAAATGCCATCACCAT+CGG | - | chr1_3:60388130-60388149 | Msa0130260:CDS | 45.0% | |
| ! | GTGTTTGGAGTCGTCAAAAG+CGG | - | chr1_3:60388176-60388195 | Msa0130260:CDS | 45.0% |
| TGTGAGACCGAACATCACAA+CGG | + | chr1_3:60388501-60388520 | None:intergenic | 45.0% | |
| GTTGTAATCTGCTAAGGGGT+TGG | - | chr1_3:60389418-60389437 | Msa0130260:intron | 45.0% | |
| GTTCTGTTACTGCCAACGTT+GGG | - | chr1_3:60389665-60389684 | Msa0130260:intron | 45.0% | |
| AAACTGGCAAATCCCAACGT+TGG | + | chr1_3:60389680-60389699 | None:intergenic | 45.0% | |
| ACCTTGTCACCCCAAAAAAC+TGG | + | chr1_3:60389696-60389715 | None:intergenic | 45.0% | |
| GTCACGTCTTCAAAGTTAGC+TGG | - | chr1_3:60389994-60390013 | Msa0130260:CDS | 45.0% | |
| AGATGAGGAGAACTTCACCT+AGG | - | chr1_3:60390058-60390077 | Msa0130260:intron | 45.0% | |
| GGAGAACTTCACCTAGGATA+AGG | - | chr1_3:60390064-60390083 | Msa0130260:intron | 45.0% | |
| TTCTGAGCTTCCCTTATCCT+AGG | + | chr1_3:60390078-60390097 | None:intergenic | 45.0% | |
| CGTCCACCCTTTGAATCAAA+AGG | + | chr1_3:60390135-60390154 | None:intergenic | 45.0% | |
| TGACAGACTTTGCCTCTGAA+AGG | + | chr1_3:60390230-60390249 | None:intergenic | 45.0% | |
| TTCAGAGGCAAAGTCTGTCA+TGG | - | chr1_3:60390230-60390249 | Msa0130260:intron | 45.0% | |
| ! | GACAGGTGTTATAGGGTAGA+AGG | - | chr1_3:60390315-60390334 | Msa0130260:intron | 45.0% |
| AGATGCCATTCTCCTGACTT+GGG | + | chr1_3:60390366-60390385 | None:intergenic | 45.0% | |
| AAGATGCCATTCTCCTGACT+TGG | + | chr1_3:60390367-60390386 | None:intergenic | 45.0% | |
| TGAGACCATGCTCTTCCAAT+AGG | - | chr1_3:60390439-60390458 | Msa0130260:CDS | 45.0% | |
| GTGTACCTATTGGAAGAGCA+TGG | + | chr1_3:60390447-60390466 | None:intergenic | 45.0% | |
| ACCGGAATATATTTCGCAGC+AGG | + | chr1_3:60390585-60390604 | None:intergenic | 45.0% | |
| GCGAAATATATTCCGGTACC+AGG | - | chr1_3:60390588-60390607 | Msa0130260:CDS | 45.0% | |
| AAGGCTGTAGAAGCTGTACA+TGG | - | chr1_3:60390911-60390930 | Msa0130260:five_prime_UTR | 45.0% | |
| ! | ATCGCTGCTTAGGATTTTCC+AGG | - | chr1_3:60390967-60390986 | Msa0130260:five_prime_UTR | 45.0% |
| GCAACAATGGGAAAGTTACC+TGG | + | chr1_3:60390988-60391007 | None:intergenic | 45.0% | |
| CGAAAGGAGAGAATTGCATG+AGG | + | chr1_3:60391054-60391073 | None:intergenic | 45.0% | |
| TCTGGTAGTCTCTTGAACTC+TGG | - | chr1_3:60391172-60391191 | Msa0130260:five_prime_UTR | 45.0% | |
| GTAGTCTCTTGAACTCTGGA+AGG | - | chr1_3:60391176-60391195 | Msa0130260:five_prime_UTR | 45.0% | |
| ! | TGCTTCCTTTGAAAACGGGA+GGG | + | chr1_3:60391677-60391696 | None:intergenic | 45.0% |
| GACGGGTAGTACCTAAAGTA+TGG | - | chr1_3:60391718-60391737 | Msa0130260:intron | 45.0% | |
| !!! | GGCCGAAGATTTTTTGGGAT+TGG | - | chr1_3:60391739-60391758 | Msa0130260:intron | 45.0% |
| CAGCTCAAGTTCAGCTCATT+TGG | + | chr1_3:60391995-60392014 | None:intergenic | 45.0% | |
| AGTTCACGAACAACTCGGTT+CGG | + | chr1_3:60392650-60392669 | None:intergenic | 45.0% | |
| ! | CGACTCGACTCGATACAAAT+TGG | + | chr1_3:60392739-60392758 | None:intergenic | 45.0% |
| ATGACTGAAGCAACTCAAGC+TGG | - | chr1_3:60393213-60393232 | Msa0130260:five_prime_UTR | 45.0% | |
| TGGAGGATCTGTAGATGCAT+TGG | - | chr1_3:60393233-60393252 | Msa0130260:five_prime_UTR | 45.0% | |
| !! | TTATTGTAATTTATTATTTA+TGG | - | chr1_3:60389056-60389075 | Msa0130260:intron | 5.0% |
| !! | AAACAATAAAATAAAATTAA+CGG | + | chr1_3:60391462-60391481 | None:intergenic | 5.0% |
| !!! | TAATTTTATTTTATTGTTTT+TGG | - | chr1_3:60391463-60391482 | Msa0130260:five_prime_UTR | 5.0% |
| GAGGGAACAGAGAGAAAGAG+AGG | + | chr1_3:60387892-60387911 | None:intergenic | 50.0% | |
| AGGAAGCGGGAAAGAGAAGA+GGG | + | chr1_3:60387910-60387929 | None:intergenic | 50.0% | |
| AGGCAAACCACAACGGTGTT+TGG | - | chr1_3:60388161-60388180 | Msa0130260:CDS | 50.0% | |
| ! | TTTGGAGTCGTCAAAAGCGG+TGG | - | chr1_3:60388179-60388198 | Msa0130260:CDS | 50.0% |
| GATGTTCGGTCTCACATTCG+AGG | - | chr1_3:60388505-60388524 | Msa0130260:intron | 50.0% | |
| TCCTGTAAATGGGTGGATGC+AGG | - | chr1_3:60389272-60389291 | Msa0130260:intron | 50.0% | |
| CCTGTAAATGGGTGGATGCA+GGG | - | chr1_3:60389273-60389292 | Msa0130260:intron | 50.0% | |
| GGTTCTGTTACTGCCAACGT+TGG | - | chr1_3:60389664-60389683 | Msa0130260:intron | 50.0% | |
| !!! | GCCAGTTTTTTGGGGTGACA+AGG | - | chr1_3:60389692-60389711 | Msa0130260:intron | 50.0% |
| CACGTCTCTACATTCTGCAG+TGG | - | chr1_3:60389762-60389781 | Msa0130260:intron | 50.0% | |
| !! | GGAAAAAAGTAGCGCTGGTG+TGG | - | chr1_3:60390155-60390174 | Msa0130260:intron | 50.0% |
| TCAGAAGAAACGCCCAAGTC+AGG | - | chr1_3:60390351-60390370 | Msa0130260:CDS | 50.0% | |
| AAACGCCCAAGTCAGGAGAA+TGG | - | chr1_3:60390358-60390377 | Msa0130260:CDS | 50.0% | |
| ! | GTTGACTCAATGCACCCTCA+AGG | - | chr1_3:60390404-60390423 | Msa0130260:CDS | 50.0% |
| TACCGTTCCCTTCAATCGAC+CGG | - | chr1_3:60390644-60390663 | Msa0130260:five_prime_UTR | 50.0% | |
| ATCCGGTCGATTGAAGGGAA+CGG | + | chr1_3:60390649-60390668 | None:intergenic | 50.0% | |
| ! | TTGAACTCTGGAAGGGCTCT+AGG | - | chr1_3:60391184-60391203 | Msa0130260:five_prime_UTR | 50.0% |
| AGCCTTCACTGCGAAAGAAG+AGG | - | chr1_3:60391308-60391327 | Msa0130260:five_prime_UTR | 50.0% | |
| GACCTCTTCTTTCGCAGTGA+AGG | + | chr1_3:60391313-60391332 | None:intergenic | 50.0% | |
| ! | CTGCTTCCTTTGAAAACGGG+AGG | + | chr1_3:60391678-60391697 | None:intergenic | 50.0% |
| TGGGATTGGATCCTCTCCAA+AGG | - | chr1_3:60391753-60391772 | Msa0130260:intron | 50.0% | |
| ! | GACTCGATTGGTTCATGAGC+TGG | - | chr1_3:60392065-60392084 | Msa0130260:intron | 50.0% |
| ! | TGAAGCATTAGAGGTAGGGC+TGG | + | chr1_3:60392791-60392810 | None:intergenic | 50.0% |
| GTGTCTATAGATGGACGTCG+TGG | - | chr1_3:60393029-60393048 | Msa0130260:five_prime_UTR | 50.0% | |
| ACTGAAGCAACTCAAGCTGG+AGG | - | chr1_3:60393216-60393235 | Msa0130260:five_prime_UTR | 50.0% | |
| ! | GGATCTGTAGATGCATTGGC+AGG | - | chr1_3:60393237-60393256 | Msa0130260:five_prime_UTR | 50.0% |
| GAGGAAGCGGGAAAGAGAAG+AGG | + | chr1_3:60387911-60387930 | None:intergenic | 55.0% | |
| TGCCACGAGGCAAACCACAA+CGG | - | chr1_3:60388154-60388173 | Msa0130260:CDS | 55.0% | |
| GACGACTCCAAACACCGTTG+TGG | + | chr1_3:60388171-60388190 | None:intergenic | 55.0% | |
| ACCGGACGTGTGTTACGTTC+AGG | - | chr1_3:60388209-60388228 | Msa0130260:CDS | 55.0% | |
| CCCTGAACGTAACACACGTC+CGG | + | chr1_3:60388213-60388232 | None:intergenic | 55.0% | |
| CCGGACGTGTGTTACGTTCA+GGG | - | chr1_3:60388210-60388229 | Msa0130260:CDS | 55.0% | |
| GACGTGTGTTACGTTCAGGG+CGG | - | chr1_3:60388213-60388232 | Msa0130260:CDS | 55.0% | |
| TACGTTCAGGGCGGCAGTTA+TGG | - | chr1_3:60388222-60388241 | Msa0130260:CDS | 55.0% | |
| TCGGAGACGTTGGCAGAATC+CGG | + | chr1_3:60388248-60388267 | None:intergenic | 55.0% | |
| CGGTTTCTTCCTCCGATCGT+CGG | + | chr1_3:60388267-60388286 | None:intergenic | 55.0% | |
| CGACGATCGGAGGAAGAAAC+CGG | - | chr1_3:60388265-60388284 | Msa0130260:intron | 55.0% | |
| CCCTGCATCCACCCATTTAC+AGG | + | chr1_3:60389276-60389295 | None:intergenic | 55.0% | |
| ACGCTCGACGCATTCAGATG+AGG | - | chr1_3:60390043-60390062 | Msa0130260:CDS | 55.0% | |
| GGACGGGAAAAAAGTAGCGC+TGG | - | chr1_3:60390150-60390169 | Msa0130260:intron | 55.0% | |
| ACTTCACAGACGCCTGGTAC+CGG | + | chr1_3:60390603-60390622 | None:intergenic | 55.0% | |
| TCAGAGACTTCACAGACGCC+TGG | + | chr1_3:60390609-60390628 | None:intergenic | 55.0% | |
| !! | ACAACTCGGTTCGGCTCGTT+AGG | + | chr1_3:60392641-60392660 | None:intergenic | 55.0% |
| CTCGTGGCAACCGATGGTGA+TGG | + | chr1_3:60388143-60388162 | None:intergenic | 60.0% | |
| ! | CATCACCATCGGTTGCCACG+AGG | - | chr1_3:60388141-60388160 | Msa0130260:CDS | 60.0% |
| GTTTGCCTCGTGGCAACCGA+TGG | + | chr1_3:60388149-60388168 | None:intergenic | 60.0% | |
| ! | CACCGTTGTGGTTTGCCTCG+TGG | + | chr1_3:60388159-60388178 | None:intergenic | 60.0% |
| GGAGTCGTCAAAAGCGGTGG+CGG | - | chr1_3:60388182-60388201 | Msa0130260:CDS | 60.0% | |
| !! | AAAAGCGGTGGCGGAGACAC+CGG | - | chr1_3:60388191-60388210 | Msa0130260:CDS | 60.0% |
| TTCAGGGCGGCAGTTATGGC+CGG | - | chr1_3:60388226-60388245 | Msa0130260:CDS | 60.0% | |
| CTGCCAACGTCTCCGACGAT+CGG | - | chr1_3:60388252-60388271 | Msa0130260:intron | 60.0% | |
| CCTCCGATCGTCGGAGACGT+TGG | + | chr1_3:60388258-60388277 | None:intergenic | 65.0% | |
| CCAACGTCTCCGACGATCGG+AGG | - | chr1_3:60388255-60388274 | Msa0130260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60387889 | 60393448 | 60387889 | ID=Msa0130260;Name=Msa0130260 |
| chr1_3 | mRNA | 60387889 | 60393448 | 60387889 | ID=Msa0130260-mRNA-1;Parent=Msa0130260;Name=Msa0130260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1753|1|1|1|1|0.75|4|173|197 |
| chr1_3 | exon | 60387889 | 60388258 | 60387889 | ID=Msa0130260-mRNA-1:exon:19920;Parent=Msa0130260-mRNA-1 |
| chr1_3 | exon | 60389949 | 60390063 | 60389949 | ID=Msa0130260-mRNA-1:exon:19919;Parent=Msa0130260-mRNA-1 |
| chr1_3 | exon | 60390349 | 60391673 | 60390349 | ID=Msa0130260-mRNA-1:exon:19918;Parent=Msa0130260-mRNA-1 |
| chr1_3 | exon | 60392739 | 60393448 | 60392739 | ID=Msa0130260-mRNA-1:exon:19917;Parent=Msa0130260-mRNA-1 |
| chr1_3 | five_prime_UTR | 60392739 | 60393448 | 60392739 | ID=Msa0130260-mRNA-1:five_prime_utr;Parent=Msa0130260-mRNA-1 |
| chr1_3 | five_prime_UTR | 60390631 | 60391673 | 60390631 | ID=Msa0130260-mRNA-1:five_prime_utr;Parent=Msa0130260-mRNA-1 |
| chr1_3 | CDS | 60390349 | 60390630 | 60390349 | ID=Msa0130260-mRNA-1:cds;Parent=Msa0130260-mRNA-1 |
| chr1_3 | CDS | 60389949 | 60390063 | 60389949 | ID=Msa0130260-mRNA-1:cds;Parent=Msa0130260-mRNA-1 |
| chr1_3 | CDS | 60388062 | 60388258 | 60388062 | ID=Msa0130260-mRNA-1:cds;Parent=Msa0130260-mRNA-1 |
| chr1_3 | three_prime_UTR | 60387889 | 60388061 | 60387889 | ID=Msa0130260-mRNA-1:three_prime_utr;Parent=Msa0130260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
