Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084100 | XP_003591753.1 | 94.564 | 699 | 38 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084100 | G7I346 | 94.564 | 699 | 38 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036160 | Msa0084100 | 0.804307 | 2.300087e-49 | -8.615850e-47 |
| Msa0084100 | Msa0130260 | 0.924262 | 8.904902e-90 | -8.615850e-47 |
| Msa0084100 | Msa0605640 | 0.801621 | 8.260057e-49 | -8.615850e-47 |
| Msa0084100 | Msa0867730 | 0.807274 | 5.474579e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084100 | MtrunA17_Chr1g0198321 | 94.564 | 699 | 37 | 1 | 1 | 699 | 1 | 698 | 0.0 | 1317 |
| Msa0084100 | MtrunA17_Chr1g0171321 | 44.667 | 750 | 335 | 17 | 4 | 688 | 2 | 736 | 0.0 | 556 |
| Msa0084100 | MtrunA17_Chr1g0181331 | 56.349 | 126 | 35 | 3 | 503 | 628 | 1 | 106 | 2.31e-37 | 135 |
| Msa0084100 | MtrunA17_Chr1g0148541 | 30.165 | 242 | 160 | 4 | 362 | 596 | 1137 | 1376 | 5.50e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084100 | AT5G04670.2 | 34.854 | 789 | 379 | 22 | 4 | 689 | 2 | 758 | 1.69e-122 | 383 |
| Msa0084100 | AT5G04670.1 | 34.854 | 789 | 379 | 22 | 4 | 689 | 2 | 758 | 1.69e-122 | 383 |
| Msa0084100 | AT4G32620.2 | 29.167 | 264 | 173 | 5 | 357 | 607 | 1034 | 1296 | 1.17e-25 | 114 |
| Msa0084100 | AT4G32620.1 | 29.167 | 264 | 173 | 5 | 357 | 607 | 1034 | 1296 | 1.21e-25 | 114 |
Find 149 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTATAAAGATTCTTAA+AGG | 0.199469 | 1_2:+63343529 | None:intergenic |
| AACAACAACAATCAACAATA+TGG | 0.240510 | 1_2:+63346001 | None:intergenic |
| GCAATTTATGACATGGATTC+AGG | 0.255213 | 1_2:-63343341 | Msa0084100:CDS |
| TGCCTTTAAGAATCTTTATA+AGG | 0.259835 | 1_2:-63343531 | Msa0084100:CDS |
| TTGAGTCTGACAGGTGTTAT+AGG | 0.291885 | 1_2:-63343757 | Msa0084100:CDS |
| ATGTCTGGGTTTCTTATTAG+AGG | 0.300928 | 1_2:+63343886 | None:intergenic |
| TTACTCATGTTCTTTGTTGA+AGG | 0.301868 | 1_2:+63343965 | None:intergenic |
| AACTTACCTTGCAAAACATT+TGG | 0.307504 | 1_2:+63342689 | None:intergenic |
| GGAAAGCTTATAGCAGAAAA+AGG | 0.328154 | 1_2:-63345636 | Msa0084100:CDS |
| TAGAAGCTGTACATGGTTAT+TGG | 0.339423 | 1_2:-63343145 | Msa0084100:CDS |
| TAATTATTATGATTAGAATA+AGG | 0.345172 | 1_2:+63340669 | None:intergenic |
| ATATATTTCGCAGCAGGAAT+TGG | 0.357826 | 1_2:+63343488 | None:intergenic |
| TTTAACATGGGTGTACCTAT+TGG | 0.360342 | 1_2:+63343610 | None:intergenic |
| CCGTCTATTTCAATAACTTC+AGG | 0.362349 | 1_2:+63344115 | None:intergenic |
| GTCTCACTGTGAATTCAATT+CGG | 0.365320 | 1_2:-63345864 | Msa0084100:five_prime_UTR |
| TGAATCAATTGTTGATGCTT+TGG | 0.367100 | 1_2:-63343255 | Msa0084100:CDS |
| AAGAGGGATACAATTCTTAC+AGG | 0.371182 | 1_2:-63345389 | Msa0084100:intron |
| TGGATTCAGGCGATGAAGAT+TGG | 0.381493 | 1_2:-63343328 | Msa0084100:CDS |
| AGGCAAACCACAACGGTGTT+TGG | 0.384459 | 1_2:-63345805 | Msa0084100:CDS |
| GATGCATAAACAGAACAAAT+AGG | 0.390898 | 1_2:+63345412 | None:intergenic |
| AAACCTTGTTCTGAGGATAT+TGG | 0.398494 | 1_2:-63345526 | Msa0084100:CDS |
| TGAGTCTGACAGGTGTTATA+GGG | 0.399315 | 1_2:-63343756 | Msa0084100:CDS |
| AGTTTGCTAATCGTCAGAAT+TGG | 0.410244 | 1_2:-63343556 | Msa0084100:CDS |
| CTCAGAAGTTTCTTTCATGA+AGG | 0.418411 | 1_2:+63344159 | None:intergenic |
| CGCTTCTATTTATTTGACTC+GGG | 0.424966 | 1_2:+63342717 | None:intergenic |
| CATTATCTTATCAGCCTTGA+GGG | 0.431408 | 1_2:+63343646 | None:intergenic |
| GAGGGAACAGAGAGAAAGAG+AGG | 0.436683 | 1_2:+63346078 | None:intergenic |
| AAAATGGTCTCATTAATCAA+TGG | 0.437286 | 1_2:-63343590 | Msa0084100:CDS |
| TCGGAGACGTTGGCAGAATC+CGG | 0.438249 | 1_2:+63345721 | None:intergenic |
| TACGTTCAGGGCGGCAGTTA+TGG | 0.439176 | 1_2:-63345744 | Msa0084100:CDS |
| ACAATAACCGCAATCTTACA+TGG | 0.439837 | 1_2:+63345550 | None:intergenic |
| TAGGTACACCCATGTTAAAA+TGG | 0.440716 | 1_2:-63343606 | Msa0084100:CDS |
| GTAAAACTCATCACTATTTG+TGG | 0.442021 | 1_2:+63343385 | None:intergenic |
| TCGCTTCTATTTATTTGACT+CGG | 0.443210 | 1_2:+63342716 | None:intergenic |
| TCTCACTGTGAATTCAATTC+GGG | 0.445754 | 1_2:-63345863 | Msa0084100:five_prime_UTR |
| GGAGAACTTCACCTAGGATA+AGG | 0.446286 | 1_2:-63344000 | Msa0084100:CDS |
| ATAATCATTCATCGCTGCTT+AGG | 0.449647 | 1_2:-63343106 | Msa0084100:CDS |
| CGTCCACCCTTTGAATCAAA+AGG | 0.450079 | 1_2:+63343932 | None:intergenic |
| TTCATAACGATGGCAGTGAT+AGG | 0.450747 | 1_2:-63345666 | Msa0084100:CDS |
| TCAAAGTTAGCTGGTCGAAA+TGG | 0.452374 | 1_2:-63344061 | Msa0084100:CDS |
| GGGAACAGAGAGAAAGAGAG+GGG | 0.453923 | 1_2:+63346080 | None:intergenic |
| AAATGGTCTCATTAATCAAT+GGG | 0.454696 | 1_2:-63343589 | Msa0084100:CDS |
| GACAGGTGTTATAGGGTAGA+AGG | 0.454707 | 1_2:-63343749 | Msa0084100:CDS |
| TCAGAAGAAACGCCCAAGTC+AGG | 0.458748 | 1_2:-63343713 | Msa0084100:CDS |
| TGAGACCATGCTCTTCCAAT+AGG | 0.459852 | 1_2:-63343625 | Msa0084100:CDS |
| AAGATGCCATTCTCCTGACT+TGG | 0.460644 | 1_2:+63343700 | None:intergenic |
| CGACGATCGGAGGAAGAAAC+CGG | 0.464676 | 1_2:-63345701 | Msa0084100:CDS |
| CGTCTATTTCAATAACTTCA+GGG | 0.465966 | 1_2:+63344116 | None:intergenic |
| GGATTCAGGCGATGAAGATT+GGG | 0.468105 | 1_2:-63343327 | Msa0084100:CDS |
| TTGAGAACCGTTGTGATGTT+CGG | 0.470153 | 1_2:-63345475 | Msa0084100:CDS |
| GCAACTGTTAGTCAAATGTC+TGG | 0.470469 | 1_2:+63343871 | None:intergenic |
| GAGAACTTCACCTAGGATAA+GGG | 0.474136 | 1_2:-63343999 | Msa0084100:CDS |
| TGTGAATTCAATTCGGGAAG+AGG | 0.478611 | 1_2:-63345857 | Msa0084100:five_prime_UTR |
| TATCACTGCCATCGTTATGA+AGG | 0.486096 | 1_2:+63345668 | None:intergenic |
| CATCTTGCAGTAAAGAAAGA+TGG | 0.486109 | 1_2:-63343683 | Msa0084100:CDS |
| TCCTGCTGCGAAATATATTC+CGG | 0.486987 | 1_2:-63343483 | Msa0084100:CDS |
| ATGACTGAAGCAACTCAAGC+TGG | 0.488992 | 1_2:-63340748 | Msa0084100:CDS |
| CAGTTTCTTGATTGACTGGT+AGG | 0.489008 | 1_2:-63340700 | Msa0084100:exon |
| GTTCTGTTACTGCCAACGTT+GGG | 0.489791 | 1_2:-63344399 | Msa0084100:CDS |
| AGGACAGTTTCTTGATTGAC+TGG | 0.490167 | 1_2:-63340704 | Msa0084100:exon |
| ACAACAACAATCAACAATAT+GGG | 0.491111 | 1_2:+63346002 | None:intergenic |
| AGGGAACAGAGAGAAAGAGA+GGG | 0.493572 | 1_2:+63346079 | None:intergenic |
| GGAGTCGTCAAAGGCGGTGG+CGG | 0.494775 | 1_2:-63345784 | Msa0084100:CDS |
| CCGGACGTGTGTTACGTTCA+GGG | 0.496740 | 1_2:-63345756 | Msa0084100:CDS |
| CAGAGCAATGACATGTAAAA+CGG | 0.496775 | 1_2:-63343363 | Msa0084100:CDS |
| ATAAGAATCCGGTCGATTGA+AGG | 0.501681 | 1_2:+63343412 | None:intergenic |
| GAGGAAGCGGGAAAGAGAAG+AGG | 0.501729 | 1_2:+63346059 | None:intergenic |
| TTCTGAGCTTCCCTTATCCT+AGG | 0.502621 | 1_2:+63343989 | None:intergenic |
| ACCGGACGTGTGTTACGTTC+AGG | 0.503995 | 1_2:-63345757 | Msa0084100:CDS |
| TTTGGAGTCGTCAAAGGCGG+TGG | 0.505206 | 1_2:-63345787 | Msa0084100:CDS |
| AGTGAAGGCTTGAGAACAAA+TGG | 0.505989 | 1_2:+63342767 | None:intergenic |
| TTAAAACCACTGCAGAATGT+AGG | 0.507655 | 1_2:+63344296 | None:intergenic |
| TTCAGGGCGGCAGTTATGGC+CGG | 0.507992 | 1_2:-63345740 | Msa0084100:CDS |
| TACCGTTCCCTTCAATCGAC+CGG | 0.509691 | 1_2:-63343420 | Msa0084100:CDS |
| TTTGTGGATATATAAGAATC+CGG | 0.513569 | 1_2:+63343401 | None:intergenic |
| GCGAAATATATTCCGGTACC+AGG | 0.522760 | 1_2:-63343476 | Msa0084100:CDS |
| GTCACGTCTTCAAAGTTAGC+TGG | 0.524696 | 1_2:-63344070 | Msa0084100:CDS |
| TAAGAATCCGGTCGATTGAA+GGG | 0.524732 | 1_2:+63343413 | None:intergenic |
| TGACAGACTTTGCCTCTGAA+AGG | 0.525131 | 1_2:+63343837 | None:intergenic |
| TCATTATCTTATCAGCCTTG+AGG | 0.527722 | 1_2:+63343645 | None:intergenic |
| ACCGGAATATATTTCGCAGC+AGG | 0.532423 | 1_2:+63343482 | None:intergenic |
| TGGAGGATCTGTAGATGCAT+TGG | 0.533088 | 1_2:-63340728 | Msa0084100:CDS |
| GACCTCTTCTTTCGCAGTGA+AGG | 0.533503 | 1_2:+63342752 | None:intergenic |
| CGGTTTCTTCCTCCGATCGT+CGG | 0.534589 | 1_2:+63345702 | None:intergenic |
| TAAAACCACTGCAGAATGTA+GGG | 0.537841 | 1_2:+63344297 | None:intergenic |
| ACTTCACAGACGCCTGGTAC+CGG | 0.538749 | 1_2:+63343464 | None:intergenic |
| CCCTGAACGTAACACACGTC+CGG | 0.545468 | 1_2:+63345756 | None:intergenic |
| TATTGTGAAACCTTGTTCTG+AGG | 0.546870 | 1_2:-63345533 | Msa0084100:CDS |
| TTATGAAGGTTTGTCTTCGC+CGG | 0.549540 | 1_2:+63345682 | None:intergenic |
| ATCGATGTTTAGAGAGAGAG+AGG | 0.556765 | 1_2:+63346040 | None:intergenic |
| CACGTCCCTACATTCTGCAG+TGG | 0.558543 | 1_2:-63344302 | Msa0084100:CDS |
| TGCAGATTTAGCAGTCTACA+AGG | 0.562190 | 1_2:-63340788 | Msa0084100:CDS |
| TATTGATTGTTGAGTCTGAC+AGG | 0.562502 | 1_2:-63343766 | Msa0084100:CDS |
| ATCTTGCAGTAAAGAAAGAT+GGG | 0.562948 | 1_2:-63343682 | Msa0084100:CDS |
| CACCGTTGTGGTTTGCCTCG+TGG | 0.564346 | 1_2:+63345810 | None:intergenic |
| GATGTTCGGTCTCACATTCG+AGG | 0.564970 | 1_2:-63345461 | Msa0084100:CDS |
| CACAAGTTTAAACCTTTCAG+AGG | 0.565112 | 1_2:-63343849 | Msa0084100:CDS |
| GGTTCTGTTACTGCCAACGT+TGG | 0.565488 | 1_2:-63344400 | Msa0084100:CDS |
| AGGAAGCGGGAAAGAGAAGA+GGG | 0.566095 | 1_2:+63346060 | None:intergenic |
| TTCATTTACAGTAGCTGCTG+AGG | 0.566104 | 1_2:-63340893 | Msa0084100:intron |
| GTTGCTATTGATATTGAAGA+CGG | 0.567379 | 1_2:-63344229 | Msa0084100:CDS |
| TAAGAATCTTGTTAGCAAGA+AGG | 0.568720 | 1_2:-63343171 | Msa0084100:CDS |
| GTTTCAAGAACATGTTTCAG+AGG | 0.568874 | 1_2:-63343285 | Msa0084100:CDS |
| GTTTGCCTCGTGGCAACCGA+TGG | 0.568919 | 1_2:+63345820 | None:intergenic |
| AGATGCCATTCTCCTGACTT+GGG | 0.569885 | 1_2:+63343701 | None:intergenic |
| CTGCCAACGTCTCCGACGAT+CGG | 0.572504 | 1_2:-63345714 | Msa0084100:CDS |
| AAACGCCCAAGTCAGGAGAA+TGG | 0.572896 | 1_2:-63343706 | Msa0084100:CDS |
| TTCAGAGGCAAAGTCTGTCA+TGG | 0.574366 | 1_2:-63343834 | Msa0084100:CDS |
| GGATCTGTAGATGCATTGGC+AGG | 0.577953 | 1_2:-63340724 | Msa0084100:CDS |
| TGTTCTGTTTATGCATCAAG+AGG | 0.580200 | 1_2:-63345406 | Msa0084100:CDS |
| TCAGAGACTTCACAGACGCC+TGG | 0.581949 | 1_2:+63343458 | None:intergenic |
| AAAGGCGGTGGCGGAGACAC+CGG | 0.583024 | 1_2:-63345775 | Msa0084100:CDS |
| AGCCTTCACTGCGAAAGAAG+AGG | 0.583942 | 1_2:-63342754 | Msa0084100:CDS |
| CCTCCGATCGTCGGAGACGT+TGG | 0.584393 | 1_2:+63345711 | None:intergenic |
| GGAACAGAGAGAAAGAGAGG+GGG | 0.585999 | 1_2:+63346081 | None:intergenic |
| AGCAGCTGCAAATGAATCAA+CGG | 0.591487 | 1_2:-63340857 | Msa0084100:CDS |
| GTCTATTTCAATAACTTCAG+GGG | 0.592740 | 1_2:+63344117 | None:intergenic |
| GACGACTCCAAACACCGTTG+TGG | 0.593876 | 1_2:+63345798 | None:intergenic |
| ACGGTGTTTGGAGTCGTCAA+AGG | 0.595511 | 1_2:-63345793 | Msa0084100:CDS |
| GGTTGAAATGCCATCACCAT+CGG | 0.595783 | 1_2:-63345836 | Msa0084100:exon |
| GATTCAACGACAAAGGATGA+AGG | 0.598555 | 1_2:-63345575 | Msa0084100:CDS |
| ATGGTTATTGGATGAGAAAG+CGG | 0.601479 | 1_2:-63343133 | Msa0084100:CDS |
| TAAAACGGCAATTTATGACA+TGG | 0.604442 | 1_2:-63343348 | Msa0084100:CDS |
| CCTGAAGTTATTGAAATAGA+CGG | 0.609763 | 1_2:-63344115 | Msa0084100:CDS |
| CTCGTGGCAACCGATGGTGA+TGG | 0.611593 | 1_2:+63345826 | None:intergenic |
| ACGCTCGACGCATTCAGATG+AGG | 0.612215 | 1_2:-63344021 | Msa0084100:CDS |
| TGTAGGGACGTGAAACATTG+AGG | 0.612731 | 1_2:+63344313 | None:intergenic |
| GTTGACTCAATGCACCCTCA+AGG | 0.616453 | 1_2:-63343660 | Msa0084100:CDS |
| GTTCTGTTTATGCATCAAGA+GGG | 0.617668 | 1_2:-63345405 | Msa0084100:CDS |
| GAATTCAACAGAACTCGGAT+CGG | 0.631609 | 1_2:+63345914 | None:intergenic |
| CAACTGTTAGTCAAATGTCT+GGG | 0.632312 | 1_2:+63343872 | None:intergenic |
| CCAACGTCTCCGACGATCGG+AGG | 0.634193 | 1_2:-63345711 | Msa0084100:CDS |
| TGGTCTCATTAATCAATGGG+TGG | 0.640024 | 1_2:-63343586 | Msa0084100:CDS |
| AAGGCTGTAGAAGCTGTACA+TGG | 0.640142 | 1_2:-63343152 | Msa0084100:CDS |
| ATCCGGTCGATTGAAGGGAA+CGG | 0.652409 | 1_2:+63343418 | None:intergenic |
| AAACCAATATCCTCAGAACA+AGG | 0.653855 | 1_2:+63345523 | None:intergenic |
| ACTATATTAATCATATAACC+CGG | 0.655191 | 1_2:-63340647 | Msa0084100:three_prime_UTR |
| GTGTACCTATTGGAAGAGCA+TGG | 0.656582 | 1_2:+63343620 | None:intergenic |
| GAGTTGAATTCAACAGAACT+CGG | 0.658279 | 1_2:+63345909 | None:intergenic |
| ACTGAAGCAACTCAAGCTGG+AGG | 0.660051 | 1_2:-63340745 | Msa0084100:CDS |
| AAACTGGCAAATCCCAACGT+TGG | 0.662902 | 1_2:+63344387 | None:intergenic |
| GAAGGATCCATGTAAGATTG+CGG | 0.664528 | 1_2:-63345557 | Msa0084100:CDS |
| GTGTTTGGAGTCGTCAAAGG+CGG | 0.675172 | 1_2:-63345790 | Msa0084100:CDS |
| AGATGAGGAGAACTTCACCT+AGG | 0.682586 | 1_2:-63344006 | Msa0084100:CDS |
| AAGACAAACCTTCATAACGA+TGG | 0.687315 | 1_2:-63345676 | Msa0084100:CDS |
| CATCACCATCGGTTGCCACG+AGG | 0.704977 | 1_2:-63345825 | Msa0084100:CDS |
| TGCCACGAGGCAAACCACAA+CGG | 0.717744 | 1_2:-63345812 | Msa0084100:CDS |
| TGTGAGACCGAACATCACAA+CGG | 0.753251 | 1_2:+63345468 | None:intergenic |
| GACGTGTGTTACGTTCAGGG+CGG | 0.770842 | 1_2:-63345753 | Msa0084100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAAAAAATTAAA+AGG | - | chr1_2:63345098-63345117 | Msa0084100:intron | 0.0% |
| !! | GGTTAAAAAAAAAAAAAAAA+AGG | + | chr1_2:63344206-63344225 | None:intergenic | 10.0% |
| !! | TAATTATTATGATTAGAATA+AGG | + | chr1_2:63345948-63345967 | None:intergenic | 10.0% |
| !! | TGCATTAAAAACATAATATA+AGG | + | chr1_2:63341375-63341394 | None:intergenic | 15.0% |
| !!! | TTTTGTCAAATTAATATCTT+TGG | - | chr1_2:63341494-63341513 | Msa0084100:intron | 15.0% |
| !! | TAAATAAATAAATAACTGCA+GGG | + | chr1_2:63341581-63341600 | None:intergenic | 15.0% |
| !! | ATAAATAAATAAATAACTGC+AGG | + | chr1_2:63341582-63341601 | None:intergenic | 15.0% |
| !! | TTTATGGTAAAAAAAATTAC+AGG | - | chr1_2:63341622-63341641 | Msa0084100:intron | 15.0% |
| !! | TTATGGTAAAAAAAATTACA+GGG | - | chr1_2:63341623-63341642 | Msa0084100:intron | 15.0% |
| !! | TCACTACATTTATTTATTTA+TGG | - | chr1_2:63341745-63341764 | Msa0084100:intron | 15.0% |
| !! | TTATGGCAATTTATTATTTA+TGG | - | chr1_2:63341762-63341781 | Msa0084100:intron | 15.0% |
| !! | ATTTATGGTAAAAAAATAAG+TGG | - | chr1_2:63341777-63341796 | Msa0084100:intron | 15.0% |
| !! | TTTATGGTAAAAAAATAAGT+GGG | - | chr1_2:63341778-63341797 | Msa0084100:intron | 15.0% |
| !!! | TTTAATTTTTTTCCTGTAAA+TGG | - | chr1_2:63341811-63341830 | Msa0084100:intron | 15.0% |
| !!! | TTAATTTTTTTCCTGTAAAT+GGG | - | chr1_2:63341812-63341831 | Msa0084100:intron | 15.0% |
| !!! | TTTGATTTCTTTTTCAATTT+CGG | - | chr1_2:63343658-63343677 | Msa0084100:CDS | 15.0% |
| !! | TATTATTTCATATTGTTAAC+AGG | - | chr1_2:63343951-63343970 | Msa0084100:CDS | 15.0% |
| !! | AAAAAAAAAAAGGAAGATAT+AGG | + | chr1_2:63344196-63344215 | None:intergenic | 15.0% |
| !! | AAACGATATAAACAAAAAAT+AGG | + | chr1_2:63344374-63344393 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTCTTTTTTTT+GGG | + | chr1_2:63344845-63344864 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTTCTCTTTTTTT+TGG | + | chr1_2:63344846-63344865 | None:intergenic | 15.0% |
| !! | AGAAAAAAAAGAGAAAAAAA+AGG | - | chr1_2:63344854-63344873 | Msa0084100:intron | 15.0% |
| !!! | TCTGATGTTTTTTATTTTGT+TGG | - | chr1_2:63341284-63341303 | Msa0084100:intron | 20.0% |
| !! | TGTAATGAATTGTAAATTGA+TGG | - | chr1_2:63341431-63341450 | Msa0084100:intron | 20.0% |
| !!! | CTTTGTTGATTTAATATCTA+TGG | - | chr1_2:63341663-63341682 | Msa0084100:intron | 20.0% |
| !! | TTATGGTAAAAAAATAAGTG+GGG | - | chr1_2:63341779-63341798 | Msa0084100:intron | 20.0% |
| !! | TTACAGGAAAAAAATTAAAC+AGG | + | chr1_2:63341810-63341829 | None:intergenic | 20.0% |
| !!! | CAATGTATGATATTGATTTT+TGG | - | chr1_2:63342020-63342039 | Msa0084100:intron | 20.0% |
| !! | GATTTATAATTCATTGAGAT+TGG | - | chr1_2:63342061-63342080 | Msa0084100:intron | 20.0% |
| !! | TAAGTTGTATATATTACGAA+AGG | - | chr1_2:63342090-63342109 | Msa0084100:intron | 20.0% |
| !! | ATGAAAAAACTGTGATTTAT+TGG | - | chr1_2:63343418-63343437 | Msa0084100:CDS | 20.0% |
| !! | AAAAAAAACCAAAACTATGA+CGG | + | chr1_2:63343796-63343815 | None:intergenic | 20.0% |
| !! | CATTTAATGATAAAAAGTGA+TGG | - | chr1_2:63344336-63344355 | Msa0084100:CDS | 20.0% |
| !! | AACAAGTAGATAAATATTAG+AGG | + | chr1_2:63344753-63344772 | None:intergenic | 20.0% |
| !!! | ATTTATCTACTTGTTTTTAG+AGG | - | chr1_2:63344758-63344777 | Msa0084100:intron | 20.0% |
| !! | AAAATTAAAAGGTCAAGATA+TGG | - | chr1_2:63345109-63345128 | Msa0084100:intron | 20.0% |
| !!! | CAAGATACTTTTATTGTTTT+TGG | - | chr1_2:63345454-63345473 | Msa0084100:CDS | 20.0% |
| !! | ACTATATTAATCATATAACC+CGG | - | chr1_2:63345967-63345986 | Msa0084100:five_prime_UTR | 20.0% |
| !! | ATAAAAAAATAAGAAGAGCT+AGG | + | chr1_2:63346018-63346037 | None:intergenic | 20.0% |
| ! | ACAACAACAATCAACAATAT+GGG | + | chr1_2:63340615-63340634 | None:intergenic | 25.0% |
| ! | AACAACAACAATCAACAATA+TGG | + | chr1_2:63340616-63340635 | None:intergenic | 25.0% |
| !!! | GTTTTCGTGTTTCTTATTTA+TGG | - | chr1_2:63341114-63341133 | Msa0084100:intron | 25.0% |
| !!! | GAGTAATTATTTTTTGACAG+TGG | - | chr1_2:63341464-63341483 | Msa0084100:intron | 25.0% |
| !!! | TAATTATTTTTTGACAGTGG+TGG | - | chr1_2:63341467-63341486 | Msa0084100:intron | 25.0% |
| ! | ACTTTGACCAAAAAAACAAA+TGG | - | chr1_2:63341893-63341912 | Msa0084100:intron | 25.0% |
| !!! | TACTACTCCATTTGTTTTTT+TGG | + | chr1_2:63341903-63341922 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTCTTTCA+GGG | - | chr1_2:63342193-63342212 | Msa0084100:intron | 25.0% |
| ! | GAAAAATCTACACAAAACAA+TGG | + | chr1_2:63342274-63342293 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGATATATGTTC+AGG | - | chr1_2:63342332-63342351 | Msa0084100:intron | 25.0% |
| !!! | ATTTTTTCTTGCATGTAATC+TGG | - | chr1_2:63342357-63342376 | Msa0084100:intron | 25.0% |
| !!! | GAATTACCTTTTGATTCAAA+GGG | - | chr1_2:63342676-63342695 | Msa0084100:intron | 25.0% |
| !!! | TAATGAGACCATTTTAACAT+GGG | + | chr1_2:63343019-63343038 | None:intergenic | 25.0% |
| !!! | TTAATGAGACCATTTTAACA+TGG | + | chr1_2:63343020-63343039 | None:intergenic | 25.0% |
| ! | AAAATGGTCTCATTAATCAA+TGG | - | chr1_2:63343024-63343043 | Msa0084100:intron | 25.0% |
| ! | AAATGGTCTCATTAATCAAT+GGG | - | chr1_2:63343025-63343044 | Msa0084100:intron | 25.0% |
| !! | TGCCTTTAAGAATCTTTATA+AGG | - | chr1_2:63343083-63343102 | Msa0084100:intron | 25.0% |
| ! | CTCCTTATAAAGATTCTTAA+AGG | + | chr1_2:63343088-63343107 | None:intergenic | 25.0% |
| ! | TTTGTGGATATATAAGAATC+CGG | + | chr1_2:63343216-63343235 | None:intergenic | 25.0% |
| !!! | AATTGAGCATTGAAATGTTT+CGG | + | chr1_2:63343576-63343595 | None:intergenic | 25.0% |
| !! | TTTATTAGTTTGAGCTGTTA+AGG | - | chr1_2:63343691-63343710 | Msa0084100:CDS | 25.0% |
| !!! | GTTTTTGGTATTTTAACTTG+TGG | - | chr1_2:63344030-63344049 | Msa0084100:CDS | 25.0% |
| !! | ACTAATAATCTAGAGTTTGA+CGG | - | chr1_2:63344250-63344269 | Msa0084100:CDS | 25.0% |
| !! | TAAATGTTTTCAAACTCCTT+TGG | + | chr1_2:63344322-63344341 | None:intergenic | 25.0% |
| ! | TTAATGATAAAAAGTGATGG+TGG | - | chr1_2:63344339-63344358 | Msa0084100:CDS | 25.0% |
| ! | TAATGATAAAAAGTGATGGT+GGG | - | chr1_2:63344340-63344359 | Msa0084100:CDS | 25.0% |
| ! | ATAAACAAAAAATAGGCAGT+GGG | + | chr1_2:63344367-63344386 | None:intergenic | 25.0% |
| ! | TATAAACAAAAAATAGGCAG+TGG | + | chr1_2:63344368-63344387 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAAAATAGGCCA+AGG | + | chr1_2:63344463-63344482 | None:intergenic | 25.0% |
| ! | GAGGGAAAAGAAAAAAAAAT+AGG | + | chr1_2:63344469-63344488 | None:intergenic | 25.0% |
| ! | GTTTAAAAACAATTGAGAGA+AGG | - | chr1_2:63344942-63344961 | Msa0084100:intron | 25.0% |
| ! | CTACAAAGGAAAAAATTTGT+AGG | + | chr1_2:63345030-63345049 | None:intergenic | 25.0% |
| !!! | CTACAAATTTTTTCCTTTGT+AGG | - | chr1_2:63345028-63345047 | Msa0084100:intron | 25.0% |
| !! | ATAATTACATGAAGCATTAG+AGG | + | chr1_2:63345354-63345373 | None:intergenic | 25.0% |
| ! | TATGAAATGAGATCTTGAAT+TGG | - | chr1_2:63345395-63345414 | Msa0084100:CDS | 25.0% |
| !!! | TGTTTTTGGATTATTGTTTC+TGG | - | chr1_2:63345468-63345487 | Msa0084100:CDS | 25.0% |
| !!! | GTTTTTGGATTATTGTTTCT+GGG | - | chr1_2:63345469-63345488 | Msa0084100:CDS | 25.0% |
| ! | TCTTAATACAGTATCTTGTT+TGG | - | chr1_2:63345499-63345518 | Msa0084100:CDS | 25.0% |
| ! | ATTGTATATGTGTCTATAGA+TGG | - | chr1_2:63345573-63345592 | Msa0084100:CDS | 25.0% |
| ! | TACTGTAAATGAATAGATCA+GGG | + | chr1_2:63345714-63345733 | None:intergenic | 25.0% |
| ! | ACAACGAAAGTGAAATTTTC+AGG | - | chr1_2:63341017-63341036 | Msa0084100:intron | 30.0% |
| GATGCATAAACAGAACAAAT+AGG | + | chr1_2:63341205-63341224 | None:intergenic | 30.0% | |
| GACAAACTAAGCATAATTCA+AGG | + | chr1_2:63341264-63341283 | None:intergenic | 30.0% | |
| AAATAAATAACTGCAGGGTT+AGG | + | chr1_2:63341576-63341595 | None:intergenic | 30.0% | |
| AAAAATTACAGGGTGATTAG+TGG | - | chr1_2:63341633-63341652 | Msa0084100:intron | 30.0% | |
| !!! | ATTTTTTTCCTGTAAATGGG+TGG | - | chr1_2:63341815-63341834 | Msa0084100:intron | 30.0% |
| TCAATAGTTGTAATCTGCTA+AGG | - | chr1_2:63341962-63341981 | Msa0084100:intron | 30.0% | |
| CAATAGTTGTAATCTGCTAA+GGG | - | chr1_2:63341963-63341982 | Msa0084100:intron | 30.0% | |
| AATAGTTGTAATCTGCTAAG+GGG | - | chr1_2:63341964-63341983 | Msa0084100:intron | 30.0% | |
| GTAAGATCAAGGTGTAAATT+AGG | + | chr1_2:63342168-63342187 | None:intergenic | 30.0% | |
| ACTCATGTTATGTAAGATCA+AGG | + | chr1_2:63342179-63342198 | None:intergenic | 30.0% | |
| CATGAGTTTAATGTTCTTTC+AGG | - | chr1_2:63342192-63342211 | Msa0084100:intron | 30.0% | |
| ! | GTTGCTATTGATATTGAAGA+CGG | - | chr1_2:63342385-63342404 | Msa0084100:intron | 30.0% |
| !! | TGATCTATCAGATTTTGAGA+TGG | - | chr1_2:63342411-63342430 | Msa0084100:intron | 30.0% |
| GTCTATTTCAATAACTTCAG+GGG | + | chr1_2:63342500-63342519 | None:intergenic | 30.0% | |
| CGTCTATTTCAATAACTTCA+GGG | + | chr1_2:63342501-63342520 | None:intergenic | 30.0% | |
| CCTGAAGTTATTGAAATAGA+CGG | - | chr1_2:63342499-63342518 | Msa0084100:intron | 30.0% | |
| TTACTCATGTTCTTTGTTGA+AGG | + | chr1_2:63342652-63342671 | None:intergenic | 30.0% | |
| !! | CGAATTACCTTTTGATTCAA+AGG | - | chr1_2:63342675-63342694 | Msa0084100:intron | 30.0% |
| ATCTTGCAGTAAAGAAAGAT+GGG | - | chr1_2:63342932-63342951 | Msa0084100:intron | 30.0% | |
| GTAAAACTCATCACTATTTG+TGG | + | chr1_2:63343232-63343251 | None:intergenic | 30.0% | |
| TAAAACGGCAATTTATGACA+TGG | - | chr1_2:63343266-63343285 | Msa0084100:CDS | 30.0% | |
| TGAATCAATTGTTGATGCTT+TGG | - | chr1_2:63343359-63343378 | Msa0084100:CDS | 30.0% | |
| TAAGAATCTTGTTAGCAAGA+AGG | - | chr1_2:63343443-63343462 | Msa0084100:CDS | 30.0% | |
| ! | TGTCTATTTCGATTTTCCAA+AGG | + | chr1_2:63343621-63343640 | None:intergenic | 30.0% |
| !! | TCGAAATAGACAAGTTTTGT+TGG | - | chr1_2:63343629-63343648 | Msa0084100:CDS | 30.0% |
| ! | TTATTTGACCGTCATAGTTT+TGG | - | chr1_2:63343785-63343804 | Msa0084100:CDS | 30.0% |
| TCGCTTCTATTTATTTGACT+CGG | + | chr1_2:63343901-63343920 | None:intergenic | 30.0% | |
| ! | GAAAATCCAAATGTTTTGCA+AGG | - | chr1_2:63343919-63343938 | Msa0084100:CDS | 30.0% |
| AACTTACCTTGCAAAACATT+TGG | + | chr1_2:63343928-63343947 | None:intergenic | 30.0% | |
| TATATTTGTGTTGCATAAGG+TGG | + | chr1_2:63344107-63344126 | None:intergenic | 30.0% | |
| CTGTATATTTGTGTTGCATA+AGG | + | chr1_2:63344110-63344129 | None:intergenic | 30.0% | |
| ! | CTAATAATCTAGAGTTTGAC+GGG | - | chr1_2:63344251-63344270 | Msa0084100:CDS | 30.0% |
| ATCCAATCCCAAAAAATCTT+CGG | + | chr1_2:63344294-63344313 | None:intergenic | 30.0% | |
| ! | TTCTTTTCCCTCTAATAGTT+CGG | - | chr1_2:63344477-63344496 | Msa0084100:intron | 30.0% |
| GAGAAAAAAAAGGAAGCAAA+TGG | - | chr1_2:63344864-63344883 | Msa0084100:intron | 30.0% | |
| ATGGAGTAACAAAATTGTGT+AGG | - | chr1_2:63344883-63344902 | Msa0084100:intron | 30.0% | |
| AACATAAATTAGTCCCACAT+CGG | - | chr1_2:63344916-63344935 | Msa0084100:intron | 30.0% | |
| ! | TTTAAAGTTCACGAACAACT+CGG | + | chr1_2:63345214-63345233 | None:intergenic | 30.0% |
| !!! | CCTATTTTTTAACTCGAGTT+CGG | + | chr1_2:63345241-63345260 | None:intergenic | 30.0% |
| CTACTGTAAATGAATAGATC+AGG | + | chr1_2:63345715-63345734 | None:intergenic | 30.0% | |
| GAGTTGAATTCAACAGAACT+CGG | + | chr1_2:63340708-63340727 | None:intergenic | 35.0% | |
| GTCTCACTGTGAATTCAATT+CGG | - | chr1_2:63340750-63340769 | Msa0084100:CDS | 35.0% | |
| TCTCACTGTGAATTCAATTC+GGG | - | chr1_2:63340751-63340770 | Msa0084100:CDS | 35.0% | |
| AAGACAAACCTTCATAACGA+TGG | - | chr1_2:63340938-63340957 | Msa0084100:intron | 35.0% | |
| GGAAAGCTTATAGCAGAAAA+AGG | - | chr1_2:63340978-63340997 | Msa0084100:intron | 35.0% | |
| !! | TTTTCAGGATTCAACGACAA+AGG | - | chr1_2:63341032-63341051 | Msa0084100:intron | 35.0% |
| ACAATAACCGCAATCTTACA+TGG | + | chr1_2:63341067-63341086 | None:intergenic | 35.0% | |
| TATTGTGAAACCTTGTTCTG+AGG | - | chr1_2:63341081-63341100 | Msa0084100:intron | 35.0% | |
| !! | AAACCTTGTTCTGAGGATAT+TGG | - | chr1_2:63341088-63341107 | Msa0084100:intron | 35.0% |
| AAACCAATATCCTCAGAACA+AGG | + | chr1_2:63341094-63341113 | None:intergenic | 35.0% | |
| TGTTCTGTTTATGCATCAAG+AGG | - | chr1_2:63341208-63341227 | Msa0084100:intron | 35.0% | |
| GTTCTGTTTATGCATCAAGA+GGG | - | chr1_2:63341209-63341228 | Msa0084100:intron | 35.0% | |
| AAGAGGGATACAATTCTTAC+AGG | - | chr1_2:63341225-63341244 | Msa0084100:intron | 35.0% | |
| AATCTATTTAATTCCCCTCG+AGG | - | chr1_2:63341406-63341425 | Msa0084100:intron | 35.0% | |
| AATTCATTACAAACCTCGAG+GGG | + | chr1_2:63341422-63341441 | None:intergenic | 35.0% | |
| CAATTCATTACAAACCTCGA+GGG | + | chr1_2:63341423-63341442 | None:intergenic | 35.0% | |
| ACAATTCATTACAAACCTCG+AGG | + | chr1_2:63341424-63341443 | None:intergenic | 35.0% | |
| AAGAGCAAGAGTAAATCAAG+TGG | + | chr1_2:63341998-63342017 | None:intergenic | 35.0% | |
| !!! | TTGGGATTTGCCAGTTTTTT+GGG | - | chr1_2:63342233-63342252 | Msa0084100:intron | 35.0% |
| TAAAACCACTGCAGAATGTA+GGG | + | chr1_2:63342320-63342339 | None:intergenic | 35.0% | |
| TTAAAACCACTGCAGAATGT+AGG | + | chr1_2:63342321-63342340 | None:intergenic | 35.0% | |
| CTCAGAAGTTTCTTTCATGA+AGG | + | chr1_2:63342458-63342477 | None:intergenic | 35.0% | |
| CCGTCTATTTCAATAACTTC+AGG | + | chr1_2:63342502-63342521 | None:intergenic | 35.0% | |
| !! | TTACCTTTTGATTCAAAGGG+TGG | - | chr1_2:63342679-63342698 | Msa0084100:intron | 35.0% |
| ATGTCTGGGTTTCTTATTAG+AGG | + | chr1_2:63342731-63342750 | None:intergenic | 35.0% | |
| CAACTGTTAGTCAAATGTCT+GGG | + | chr1_2:63342745-63342764 | None:intergenic | 35.0% | |
| CACAAGTTTAAACCTTTCAG+AGG | - | chr1_2:63342765-63342784 | Msa0084100:CDS | 35.0% | |
| ! | TATTGATTGTTGAGTCTGAC+AGG | - | chr1_2:63342848-63342867 | Msa0084100:intron | 35.0% |
| CATCTTGCAGTAAAGAAAGA+TGG | - | chr1_2:63342931-63342950 | Msa0084100:intron | 35.0% | |
| CATTATCTTATCAGCCTTGA+GGG | + | chr1_2:63342971-63342990 | None:intergenic | 35.0% | |
| TCATTATCTTATCAGCCTTG+AGG | + | chr1_2:63342972-63342991 | None:intergenic | 35.0% | |
| TTTAACATGGGTGTACCTAT+TGG | + | chr1_2:63343007-63343026 | None:intergenic | 35.0% | |
| TAGGTACACCCATGTTAAAA+TGG | - | chr1_2:63343008-63343027 | Msa0084100:intron | 35.0% | |
| !! | AGTTTGCTAATCGTCAGAAT+TGG | - | chr1_2:63343058-63343077 | Msa0084100:intron | 35.0% |
| ATATATTTCGCAGCAGGAAT+TGG | + | chr1_2:63343129-63343148 | None:intergenic | 35.0% | |
| CAGAGCAATGACATGTAAAA+CGG | - | chr1_2:63343251-63343270 | Msa0084100:CDS | 35.0% | |
| GCAATTTATGACATGGATTC+AGG | - | chr1_2:63343273-63343292 | Msa0084100:CDS | 35.0% | |
| GTTTCAAGAACATGTTTCAG+AGG | - | chr1_2:63343329-63343348 | Msa0084100:CDS | 35.0% | |
| ! | TTTTCATCACAACAGTCATC+TGG | + | chr1_2:63343405-63343424 | None:intergenic | 35.0% |
| TAGAAGCTGTACATGGTTAT+TGG | - | chr1_2:63343469-63343488 | Msa0084100:CDS | 35.0% | |
| ATGGTTATTGGATGAGAAAG+CGG | - | chr1_2:63343481-63343500 | Msa0084100:CDS | 35.0% | |
| ATAATCATTCATCGCTGCTT+AGG | - | chr1_2:63343508-63343527 | Msa0084100:CDS | 35.0% | |
| CGCTTCTATTTATTTGACTC+GGG | + | chr1_2:63343900-63343919 | None:intergenic | 35.0% | |
| ! | TTTAACCCTCCCATTTTCAA+AGG | - | chr1_2:63344219-63344238 | Msa0084100:CDS | 35.0% |
| ! | TGTCTGCTTCCTTTGAAAAT+GGG | + | chr1_2:63344231-63344250 | None:intergenic | 35.0% |
| AAAATCTTCGGGCATACTTT+AGG | + | chr1_2:63344282-63344301 | None:intergenic | 35.0% | |
| !!! | AAGTATGCCCGAAGATTTTT+TGG | - | chr1_2:63344283-63344302 | Msa0084100:CDS | 35.0% |
| !!! | AGTATGCCCGAAGATTTTTT+GGG | - | chr1_2:63344284-63344303 | Msa0084100:CDS | 35.0% |
| TCCAATCCCAAAAAATCTTC+GGG | + | chr1_2:63344293-63344312 | None:intergenic | 35.0% | |
| !! | AAGTTCAACGGGTTAATTGT+CGG | + | chr1_2:63344511-63344530 | None:intergenic | 35.0% |
| ACATAAATTAGTCCCACATC+GGG | - | chr1_2:63344917-63344936 | Msa0084100:intron | 35.0% | |
| TGTTTGTCTTAAGCCTACAA+AGG | + | chr1_2:63345044-63345063 | None:intergenic | 35.0% | |
| CCGAACTCGAGTTAAAAAAT+AGG | - | chr1_2:63345238-63345257 | Msa0084100:intron | 35.0% | |
| ! | TACATGAAGCATTAGAGGTA+GGG | + | chr1_2:63345349-63345368 | None:intergenic | 35.0% |
| ! | TTACATGAAGCATTAGAGGT+AGG | + | chr1_2:63345350-63345369 | None:intergenic | 35.0% |
| ! | TCTTTTCTGCAATGAAAACC+GGG | + | chr1_2:63345988-63346007 | None:intergenic | 35.0% |
| ! | CTCTTTTCTGCAATGAAAAC+CGG | + | chr1_2:63345989-63346008 | None:intergenic | 35.0% |
| ATCGATGTTTAGAGAGAGAG+AGG | + | chr1_2:63340577-63340596 | None:intergenic | 40.0% | |
| GAATTCAACAGAACTCGGAT+CGG | + | chr1_2:63340703-63340722 | None:intergenic | 40.0% | |
| TGTGAATTCAATTCGGGAAG+AGG | - | chr1_2:63340757-63340776 | Msa0084100:CDS | 40.0% | |
| TTATGAAGGTTTGTCTTCGC+CGG | + | chr1_2:63340935-63340954 | None:intergenic | 40.0% | |
| TATCACTGCCATCGTTATGA+AGG | + | chr1_2:63340949-63340968 | None:intergenic | 40.0% | |
| TTCATAACGATGGCAGTGAT+AGG | - | chr1_2:63340948-63340967 | Msa0084100:intron | 40.0% | |
| ! | GATGGCAGTGATAGGTTTTA+CGG | - | chr1_2:63340956-63340975 | Msa0084100:intron | 40.0% |
| ! | ATGGCAGTGATAGGTTTTAC+GGG | - | chr1_2:63340957-63340976 | Msa0084100:intron | 40.0% |
| GATTCAACGACAAAGGATGA+AGG | - | chr1_2:63341039-63341058 | Msa0084100:intron | 40.0% | |
| GAAGGATCCATGTAAGATTG+CGG | - | chr1_2:63341057-63341076 | Msa0084100:intron | 40.0% | |
| TTGAGAACCGTTGTGATGTT+CGG | - | chr1_2:63341139-63341158 | Msa0084100:intron | 40.0% | |
| GTAAATTGATGGAAACTGCG+TGG | - | chr1_2:63341442-63341461 | Msa0084100:intron | 40.0% | |
| AATTACAGGGTGATTAGTGG+TGG | - | chr1_2:63341636-63341655 | Msa0084100:intron | 40.0% | |
| AGCAAGAGTAAATCAAGTGG+TGG | + | chr1_2:63341995-63342014 | None:intergenic | 40.0% | |
| !!! | GTTGGGATTTGCCAGTTTTT+TGG | - | chr1_2:63342232-63342251 | Msa0084100:intron | 40.0% |
| !!! | TGGGATTTGCCAGTTTTTTG+GGG | - | chr1_2:63342234-63342253 | Msa0084100:intron | 40.0% |
| TCAAAGTTAGCTGGTCGAAA+TGG | - | chr1_2:63342553-63342572 | Msa0084100:intron | 40.0% | |
| GAGAACTTCACCTAGGATAA+GGG | - | chr1_2:63342615-63342634 | Msa0084100:intron | 40.0% | |
| !! | CTTTTGATTCAAAGGGTGGA+CGG | - | chr1_2:63342683-63342702 | Msa0084100:intron | 40.0% |
| !! | TTTTGATTCAAAGGGTGGAC+GGG | - | chr1_2:63342684-63342703 | Msa0084100:intron | 40.0% |
| GCAACTGTTAGTCAAATGTC+TGG | + | chr1_2:63342746-63342765 | None:intergenic | 40.0% | |
| ! | TTGAGTCTGACAGGTGTTAT+AGG | - | chr1_2:63342857-63342876 | Msa0084100:intron | 40.0% |
| ! | TGAGTCTGACAGGTGTTATA+GGG | - | chr1_2:63342858-63342877 | Msa0084100:intron | 40.0% |
| TGGTCTCATTAATCAATGGG+TGG | - | chr1_2:63343028-63343047 | Msa0084100:intron | 40.0% | |
| TCCTGCTGCGAAATATATTC+CGG | - | chr1_2:63343131-63343150 | Msa0084100:CDS | 40.0% | |
| TAAGAATCCGGTCGATTGAA+GGG | + | chr1_2:63343204-63343223 | None:intergenic | 40.0% | |
| ATAAGAATCCGGTCGATTGA+AGG | + | chr1_2:63343205-63343224 | None:intergenic | 40.0% | |
| AAAGCAAGCAGTGCAACAAT+GGG | + | chr1_2:63343551-63343570 | None:intergenic | 40.0% | |
| TAAAGCAAGCAGTGCAACAA+TGG | + | chr1_2:63343552-63343571 | None:intergenic | 40.0% | |
| CTGTTAAGGCGATGTATATC+TGG | - | chr1_2:63343705-63343724 | Msa0084100:CDS | 40.0% | |
| ! | TAGTCTCTTGAACTCTGGAA+GGG | - | chr1_2:63343728-63343747 | Msa0084100:CDS | 40.0% |
| AGTGAAGGCTTGAGAACAAA+TGG | + | chr1_2:63343850-63343869 | None:intergenic | 40.0% | |
| ! | TGCTTCCTTTGAAAATGGGA+GGG | + | chr1_2:63344227-63344246 | None:intergenic | 40.0% |
| ! | GTGTCTGCTTCCTTTGAAAA+TGG | + | chr1_2:63344232-63344251 | None:intergenic | 40.0% |
| !! | GTTTTCAAACTCCTTTGGAG+AGG | + | chr1_2:63344317-63344336 | None:intergenic | 40.0% |
| TCACAACTCAGATTGTTCCT+TGG | - | chr1_2:63344443-63344462 | Msa0084100:intron | 40.0% | |
| TCGAGTTCCGAACTATTAGA+GGG | + | chr1_2:63344487-63344506 | None:intergenic | 40.0% | |
| ATCGAGTTCCGAACTATTAG+AGG | + | chr1_2:63344488-63344507 | None:intergenic | 40.0% | |
| GACAATTAACCCGTTGAACT+TGG | - | chr1_2:63344510-63344529 | Msa0084100:intron | 40.0% | |
| GTTCATGAACCAAGTTCAAC+GGG | + | chr1_2:63344522-63344541 | None:intergenic | 40.0% | |
| GGTTCATGAACCAAGTTCAA+CGG | + | chr1_2:63344523-63344542 | None:intergenic | 40.0% | |
| ! | TGCATATAGTTCGACTCGAT+TGG | - | chr1_2:63344602-63344621 | Msa0084100:intron | 40.0% |
| CATAAATTAGTCCCACATCG+GGG | - | chr1_2:63344918-63344937 | Msa0084100:intron | 40.0% | |
| ! | GTTTTTAAACTCCCCGATGT+GGG | + | chr1_2:63344932-63344951 | None:intergenic | 40.0% |
| !! | TGTTTTTAAACTCCCCGATG+TGG | + | chr1_2:63344933-63344952 | None:intergenic | 40.0% |
| TTCATTTACAGTAGCTGCTG+AGG | - | chr1_2:63345721-63345740 | Msa0084100:CDS | 40.0% | |
| AGCAGCTGCAAATGAATCAA+CGG | - | chr1_2:63345757-63345776 | Msa0084100:CDS | 40.0% | |
| TGCAGATTTAGCAGTCTACA+AGG | - | chr1_2:63345826-63345845 | Msa0084100:CDS | 40.0% | |
| AGGACAGTTTCTTGATTGAC+TGG | - | chr1_2:63345910-63345929 | Msa0084100:five_prime_UTR | 40.0% | |
| CAGTTTCTTGATTGACTGGT+AGG | - | chr1_2:63345914-63345933 | Msa0084100:five_prime_UTR | 40.0% | |
| ! | CGGTTTTCATTGCAGAAAAG+AGG | - | chr1_2:63345987-63346006 | Msa0084100:five_prime_UTR | 40.0% |
| TTTAGAGAGAGAGAGGAAGC+GGG | + | chr1_2:63340570-63340589 | None:intergenic | 45.0% | |
| GTTTAGAGAGAGAGAGGAAG+CGG | + | chr1_2:63340571-63340590 | None:intergenic | 45.0% | |
| GGTTGAAATGCCATCACCAT+CGG | - | chr1_2:63340778-63340797 | Msa0084100:CDS | 45.0% | |
| TGTGAGACCGAACATCACAA+CGG | + | chr1_2:63341149-63341168 | None:intergenic | 45.0% | |
| GTTGTAATCTGCTAAGGGGT+TGG | - | chr1_2:63341968-63341987 | Msa0084100:intron | 45.0% | |
| GTTCTGTTACTGCCAACGTT+GGG | - | chr1_2:63342215-63342234 | Msa0084100:intron | 45.0% | |
| AAACTGGCAAATCCCAACGT+TGG | + | chr1_2:63342230-63342249 | None:intergenic | 45.0% | |
| ACCTTGTCACCCCAAAAAAC+TGG | + | chr1_2:63342246-63342265 | None:intergenic | 45.0% | |
| TGTAGGGACGTGAAACATTG+AGG | + | chr1_2:63342304-63342323 | None:intergenic | 45.0% | |
| GTCACGTCTTCAAAGTTAGC+TGG | - | chr1_2:63342544-63342563 | Msa0084100:intron | 45.0% | |
| AGATGAGGAGAACTTCACCT+AGG | - | chr1_2:63342608-63342627 | Msa0084100:intron | 45.0% | |
| GGAGAACTTCACCTAGGATA+AGG | - | chr1_2:63342614-63342633 | Msa0084100:intron | 45.0% | |
| TTCTGAGCTTCCCTTATCCT+AGG | + | chr1_2:63342628-63342647 | None:intergenic | 45.0% | |
| CGTCCACCCTTTGAATCAAA+AGG | + | chr1_2:63342685-63342704 | None:intergenic | 45.0% | |
| TGACAGACTTTGCCTCTGAA+AGG | + | chr1_2:63342780-63342799 | None:intergenic | 45.0% | |
| TTCAGAGGCAAAGTCTGTCA+TGG | - | chr1_2:63342780-63342799 | Msa0084100:CDS | 45.0% | |
| ! | GACAGGTGTTATAGGGTAGA+AGG | - | chr1_2:63342865-63342884 | Msa0084100:intron | 45.0% |
| AGATGCCATTCTCCTGACTT+GGG | + | chr1_2:63342916-63342935 | None:intergenic | 45.0% | |
| AAGATGCCATTCTCCTGACT+TGG | + | chr1_2:63342917-63342936 | None:intergenic | 45.0% | |
| TGAGACCATGCTCTTCCAAT+AGG | - | chr1_2:63342989-63343008 | Msa0084100:intron | 45.0% | |
| GTGTACCTATTGGAAGAGCA+TGG | + | chr1_2:63342997-63343016 | None:intergenic | 45.0% | |
| ACCGGAATATATTTCGCAGC+AGG | + | chr1_2:63343135-63343154 | None:intergenic | 45.0% | |
| GCGAAATATATTCCGGTACC+AGG | - | chr1_2:63343138-63343157 | Msa0084100:CDS | 45.0% | |
| TGGATTCAGGCGATGAAGAT+TGG | - | chr1_2:63343286-63343305 | Msa0084100:CDS | 45.0% | |
| GGATTCAGGCGATGAAGATT+GGG | - | chr1_2:63343287-63343306 | Msa0084100:CDS | 45.0% | |
| AAGGCTGTAGAAGCTGTACA+TGG | - | chr1_2:63343462-63343481 | Msa0084100:CDS | 45.0% | |
| ! | ATCGCTGCTTAGGATTTTCC+AGG | - | chr1_2:63343518-63343537 | Msa0084100:CDS | 45.0% |
| GCAACAATGGGAAAGTTACC+TGG | + | chr1_2:63343539-63343558 | None:intergenic | 45.0% | |
| CCAAAGGAGAGAATTGCATG+AGG | + | chr1_2:63343605-63343624 | None:intergenic | 45.0% | |
| CCTCATGCAATTCTCTCCTT+TGG | - | chr1_2:63343602-63343621 | Msa0084100:CDS | 45.0% | |
| TCTGGTAGTCTCTTGAACTC+TGG | - | chr1_2:63343723-63343742 | Msa0084100:CDS | 45.0% | |
| GTAGTCTCTTGAACTCTGGA+AGG | - | chr1_2:63343727-63343746 | Msa0084100:CDS | 45.0% | |
| ! | CTGCTTCCTTTGAAAATGGG+AGG | + | chr1_2:63344228-63344247 | None:intergenic | 45.0% |
| !!! | GCCCGAAGATTTTTTGGGAT+TGG | - | chr1_2:63344289-63344308 | Msa0084100:CDS | 45.0% |
| CAGCTCAAGTTCAGCTCATT+TGG | + | chr1_2:63344544-63344563 | None:intergenic | 45.0% | |
| AGTTCACGAACAACTCGGTT+CGG | + | chr1_2:63345209-63345228 | None:intergenic | 45.0% | |
| ! | GAGCTCGACTCGATACAAAT+TGG | + | chr1_2:63345298-63345317 | None:intergenic | 45.0% |
| ATGACTGAAGCAACTCAAGC+TGG | - | chr1_2:63345866-63345885 | Msa0084100:five_prime_UTR | 45.0% | |
| TGGAGGATCTGTAGATGCAT+TGG | - | chr1_2:63345886-63345905 | Msa0084100:five_prime_UTR | 45.0% | |
| !! | TTATTGTAATTTATTATTTA+TGG | - | chr1_2:63341606-63341625 | Msa0084100:intron | 5.0% |
| !! | AAACAATAAAATAAAATTAA+CGG | + | chr1_2:63344014-63344033 | None:intergenic | 5.0% |
| !!! | TAATTTTATTTTATTGTTTT+TGG | - | chr1_2:63344015-63344034 | Msa0084100:CDS | 5.0% |
| GAGGGAACAGAGAGAAAGAG+AGG | + | chr1_2:63340539-63340558 | None:intergenic | 50.0% | |
| AGGAAGCGGGAAAGAGAAGA+GGG | + | chr1_2:63340557-63340576 | None:intergenic | 50.0% | |
| AGGCAAACCACAACGGTGTT+TGG | - | chr1_2:63340809-63340828 | Msa0084100:CDS | 50.0% | |
| ! | ACGGTGTTTGGAGTCGTCAA+AGG | - | chr1_2:63340821-63340840 | Msa0084100:CDS | 50.0% |
| ! | GTGTTTGGAGTCGTCAAAGG+CGG | - | chr1_2:63340824-63340843 | Msa0084100:CDS | 50.0% |
| GATGTTCGGTCTCACATTCG+AGG | - | chr1_2:63341153-63341172 | Msa0084100:intron | 50.0% | |
| TCCTGTAAATGGGTGGATGC+AGG | - | chr1_2:63341822-63341841 | Msa0084100:intron | 50.0% | |
| CCTGTAAATGGGTGGATGCA+GGG | - | chr1_2:63341823-63341842 | Msa0084100:intron | 50.0% | |
| GGTTCTGTTACTGCCAACGT+TGG | - | chr1_2:63342214-63342233 | Msa0084100:intron | 50.0% | |
| !!! | GCCAGTTTTTTGGGGTGACA+AGG | - | chr1_2:63342242-63342261 | Msa0084100:intron | 50.0% |
| !! | GGAAAAAAGTAGCGCTGGTG+TGG | - | chr1_2:63342705-63342724 | Msa0084100:CDS | 50.0% |
| TCAGAAGAAACGCCCAAGTC+AGG | - | chr1_2:63342901-63342920 | Msa0084100:intron | 50.0% | |
| AAACGCCCAAGTCAGGAGAA+TGG | - | chr1_2:63342908-63342927 | Msa0084100:intron | 50.0% | |
| ! | GTTGACTCAATGCACCCTCA+AGG | - | chr1_2:63342954-63342973 | Msa0084100:intron | 50.0% |
| TACCGTTCCCTTCAATCGAC+CGG | - | chr1_2:63343194-63343213 | Msa0084100:CDS | 50.0% | |
| ATCCGGTCGATTGAAGGGAA+CGG | + | chr1_2:63343199-63343218 | None:intergenic | 50.0% | |
| ! | TTGAACTCTGGAAGGGCTCT+AGG | - | chr1_2:63343735-63343754 | Msa0084100:CDS | 50.0% |
| AGCCTTCACTGCGAAAGAAG+AGG | - | chr1_2:63343860-63343879 | Msa0084100:CDS | 50.0% | |
| GACCTCTTCTTTCGCAGTGA+AGG | + | chr1_2:63343865-63343884 | None:intergenic | 50.0% | |
| TGGGATTGGATCCTCTCCAA+AGG | - | chr1_2:63344303-63344322 | Msa0084100:CDS | 50.0% | |
| ! | TGAAGCATTAGAGGTAGGGC+TGG | + | chr1_2:63345345-63345364 | None:intergenic | 50.0% |
| ACTGAAGCAACTCAAGCTGG+AGG | - | chr1_2:63345869-63345888 | Msa0084100:five_prime_UTR | 50.0% | |
| ! | GGATCTGTAGATGCATTGGC+AGG | - | chr1_2:63345890-63345909 | Msa0084100:five_prime_UTR | 50.0% |
| GAGGAAGCGGGAAAGAGAAG+AGG | + | chr1_2:63340558-63340577 | None:intergenic | 55.0% | |
| TGCCACGAGGCAAACCACAA+CGG | - | chr1_2:63340802-63340821 | Msa0084100:CDS | 55.0% | |
| GACGACTCCAAACACCGTTG+TGG | + | chr1_2:63340819-63340838 | None:intergenic | 55.0% | |
| ! | TTTGGAGTCGTCAAAGGCGG+TGG | - | chr1_2:63340827-63340846 | Msa0084100:CDS | 55.0% |
| ACCGGACGTGTGTTACGTTC+AGG | - | chr1_2:63340857-63340876 | Msa0084100:CDS | 55.0% | |
| CCCTGAACGTAACACACGTC+CGG | + | chr1_2:63340861-63340880 | None:intergenic | 55.0% | |
| CCGGACGTGTGTTACGTTCA+GGG | - | chr1_2:63340858-63340877 | Msa0084100:CDS | 55.0% | |
| GACGTGTGTTACGTTCAGGG+CGG | - | chr1_2:63340861-63340880 | Msa0084100:CDS | 55.0% | |
| TACGTTCAGGGCGGCAGTTA+TGG | - | chr1_2:63340870-63340889 | Msa0084100:CDS | 55.0% | |
| TCGGAGACGTTGGCAGAATC+CGG | + | chr1_2:63340896-63340915 | None:intergenic | 55.0% | |
| CGGTTTCTTCCTCCGATCGT+CGG | + | chr1_2:63340915-63340934 | None:intergenic | 55.0% | |
| CGACGATCGGAGGAAGAAAC+CGG | - | chr1_2:63340913-63340932 | Msa0084100:intron | 55.0% | |
| CCCTGCATCCACCCATTTAC+AGG | + | chr1_2:63341826-63341845 | None:intergenic | 55.0% | |
| CACGTCCCTACATTCTGCAG+TGG | - | chr1_2:63342312-63342331 | Msa0084100:intron | 55.0% | |
| ACGCTCGACGCATTCAGATG+AGG | - | chr1_2:63342593-63342612 | Msa0084100:intron | 55.0% | |
| GGACGGGAAAAAAGTAGCGC+TGG | - | chr1_2:63342700-63342719 | Msa0084100:CDS | 55.0% | |
| ACTTCACAGACGCCTGGTAC+CGG | + | chr1_2:63343153-63343172 | None:intergenic | 55.0% | |
| TCAGAGACTTCACAGACGCC+TGG | + | chr1_2:63343159-63343178 | None:intergenic | 55.0% | |
| !! | ACAACTCGGTTCGGCTCGTT+AGG | + | chr1_2:63345200-63345219 | None:intergenic | 55.0% |
| CTCGTGGCAACCGATGGTGA+TGG | + | chr1_2:63340791-63340810 | None:intergenic | 60.0% | |
| ! | CATCACCATCGGTTGCCACG+AGG | - | chr1_2:63340789-63340808 | Msa0084100:CDS | 60.0% |
| GTTTGCCTCGTGGCAACCGA+TGG | + | chr1_2:63340797-63340816 | None:intergenic | 60.0% | |
| ! | CACCGTTGTGGTTTGCCTCG+TGG | + | chr1_2:63340807-63340826 | None:intergenic | 60.0% |
| TTCAGGGCGGCAGTTATGGC+CGG | - | chr1_2:63340874-63340893 | Msa0084100:CDS | 60.0% | |
| CTGCCAACGTCTCCGACGAT+CGG | - | chr1_2:63340900-63340919 | Msa0084100:intron | 60.0% | |
| GGAGTCGTCAAAGGCGGTGG+CGG | - | chr1_2:63340830-63340849 | Msa0084100:CDS | 65.0% | |
| !! | AAAGGCGGTGGCGGAGACAC+CGG | - | chr1_2:63340839-63340858 | Msa0084100:CDS | 65.0% |
| CCTCCGATCGTCGGAGACGT+TGG | + | chr1_2:63340906-63340925 | None:intergenic | 65.0% | |
| CCAACGTCTCCGACGATCGG+AGG | - | chr1_2:63340903-63340922 | Msa0084100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 63340536 | 63346100 | 63340536 | ID=Msa0084100;Name=Msa0084100 |
| chr1_2 | mRNA | 63340536 | 63346100 | 63340536 | ID=Msa0084100-mRNA-1;Parent=Msa0084100;Name=Msa0084100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=249|1|1|1|1|1|4|172|699 |
| chr1_2 | exon | 63340536 | 63340904 | 63340536 | ID=Msa0084100-mRNA-1:exon:21199;Parent=Msa0084100-mRNA-1 |
| chr1_2 | exon | 63342696 | 63342810 | 63342696 | ID=Msa0084100-mRNA-1:exon:21198;Parent=Msa0084100-mRNA-1 |
| chr1_2 | exon | 63343097 | 63344422 | 63343097 | ID=Msa0084100-mRNA-1:exon:21197;Parent=Msa0084100-mRNA-1 |
| chr1_2 | exon | 63345390 | 63346100 | 63345390 | ID=Msa0084100-mRNA-1:exon:21196;Parent=Msa0084100-mRNA-1 |
| chr1_2 | five_prime_UTR | 63345852 | 63346100 | 63345852 | ID=Msa0084100-mRNA-1:five_prime_utr;Parent=Msa0084100-mRNA-1 |
| chr1_2 | CDS | 63345390 | 63345851 | 63345390 | ID=Msa0084100-mRNA-1:cds;Parent=Msa0084100-mRNA-1 |
| chr1_2 | CDS | 63343097 | 63344422 | 63343097 | ID=Msa0084100-mRNA-1:cds;Parent=Msa0084100-mRNA-1 |
| chr1_2 | CDS | 63342696 | 63342810 | 63342696 | ID=Msa0084100-mRNA-1:cds;Parent=Msa0084100-mRNA-1 |
| chr1_2 | CDS | 63340708 | 63340904 | 63340708 | ID=Msa0084100-mRNA-1:cds;Parent=Msa0084100-mRNA-1 |
| chr1_2 | three_prime_UTR | 63340536 | 63340707 | 63340536 | ID=Msa0084100-mRNA-1:three_prime_utr;Parent=Msa0084100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
