AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116520 MtrunA17_Chr1g0181811 97.063 749 21 1 1 749 1 748 0.0 1509
Msa0116520 MtrunA17_Chr4g0030271 43.680 712 360 12 56 737 63 763 2.39e-151 460
Msa0116520 MtrunA17_Chr3g0127941 32.950 695 370 21 73 737 44 672 7.77e-75 256
Msa0116520 MtrunA17_Chr7g0276361 58.915 129 53 0 78 206 7 135 3.24e-46 174
Msa0116520 MtrunA17_Chr7g0276361 62.745 51 16 1 687 737 536 583 2.74e-12 70.1
Msa0116520 MtrunA17_Chr3g0091641 42.188 128 74 0 79 206 18 145 9.23e-26 112
Msa0116520 MtrunA17_Chr3g0091641 57.627 59 22 1 677 735 483 538 1.88e-12 70.5
Msa0116520 MtrunA17_Chr4g0061021 41.406 128 75 0 79 206 27 154 1.12e-25 112
Msa0116520 MtrunA17_Chr4g0061021 55.738 61 24 1 677 737 490 547 6.58e-13 72.0
Msa0116520 MtrunA17_Chr2g0304841 38.525 122 72 2 85 206 22 140 1.05e-22 103
Msa0116520 MtrunA17_Chr1g0161431 35.366 164 91 3 85 247 15 164 3.84e-22 101
Msa0116520 MtrunA17_Chr3g0134481 39.200 125 73 2 85 209 12 133 1.25e-21 93.2
Msa0116520 MtrunA17_Chr3g0137101 37.705 122 73 2 85 206 12 130 3.07e-21 99.0
Msa0116520 MtrunA17_Chr2g0294911 39.344 122 71 1 85 206 33 151 5.82e-21 97.8
Msa0116520 MtrunA17_Chr4g0067981 33.121 157 102 1 85 241 35 188 6.47e-21 97.8
Msa0116520 MtrunA17_Chr4g0074411 37.705 122 73 1 85 206 22 140 2.43e-20 95.9
Msa0116520 MtrunA17_Chr1g0149841 34.586 133 84 2 85 217 9 138 2.71e-19 92.0
Msa0116520 MtrunA17_Chr4g0074401 36.066 122 75 1 85 206 21 139 6.67e-19 91.3
Msa0116520 MtrunA17_Chr3g0123131 36.066 122 75 1 85 206 17 135 1.86e-18 89.7
Msa0116520 MtrunA17_Chr7g0275401 34.848 132 83 2 85 216 9 137 3.33e-18 85.9
Msa0116520 MtrunA17_Chr1g0149851 35.246 122 76 2 85 206 9 127 1.68e-17 86.7
Msa0116520 MtrunA17_Chr8g0376881 35.246 122 76 1 85 206 29 147 7.21e-17 84.7
Msa0116520 MtrunA17_Chr7g0256551 30.935 139 78 2 85 205 9 147 4.90e-15 75.5
Msa0116520 MtrunA17_Chr7g0275891 32.331 133 86 3 85 216 9 138 1.07e-14 76.3
Msa0116520 MtrunA17_Chr5g0414931 27.717 184 104 4 83 252 14 182 1.75e-13 70.9
Msa0116520 MtrunA17_Chr8g0383961 32.520 123 78 2 85 206 18 136 2.52e-13 70.9
Msa0116520 MtrunA17_Chr3g0134461 31.469 143 94 2 85 226 12 151 3.04e-13 69.3
Msa0116520 MtrunA17_Chr3g0128691 35.200 125 68 2 87 199 20 143 3.17e-13 68.2
Msa0116520 MtrunA17_Chr8g0345901 62.069 58 19 1 685 742 577 631 4.88e-13 72.8
Msa0116520 MtrunA17_Chr4g0074421 40.789 76 42 1 131 206 2 74 1.00e-12 67.8
Msa0116520 MtrunA17_Chr3g0082861 29.197 137 79 1 87 205 6 142 1.52e-12 66.2
Msa0116520 MtrunA17_Chr4g0059571 31.538 130 80 3 85 205 26 155 7.74e-12 65.5
Msa0116520 MtrunA17_Chr1g0170741 31.496 127 75 2 85 199 8 134 1.45e-11 64.3
Msa0116520 MtrunA17_Chr3g0118211 28.477 151 93 4 82 223 20 164 2.65e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116520 AT5G02810.1 49.464 746 267 23 36 739 36 713 1.91e-175 521
Msa0116520 AT5G02810.2 46.216 621 231 21 161 739 10 569 2.84e-109 345
Msa0116520 AT5G60100.5 46.804 438 162 13 73 495 52 433 1.14e-91 296
Msa0116520 AT5G60100.5 46.000 100 38 4 647 737 392 484 6.04e-14 75.5
Msa0116520 AT5G60100.3 46.804 438 162 13 73 495 52 433 1.14e-91 296
Msa0116520 AT5G60100.3 46.000 100 38 4 647 737 392 484 6.04e-14 75.5
Msa0116520 AT5G60100.1 46.804 438 162 13 73 495 52 433 1.14e-91 296
Msa0116520 AT5G60100.1 46.000 100 38 4 647 737 392 484 6.04e-14 75.5
Msa0116520 AT5G60100.7 48.462 390 137 11 73 448 52 391 2.03e-89 287
Msa0116520 AT5G60100.6 48.462 390 137 11 73 448 52 391 2.03e-89 287
Msa0116520 AT5G60100.4 48.462 390 137 11 73 448 52 391 2.03e-89 287
Msa0116520 AT5G60100.2 44.086 465 162 14 73 495 52 460 1.36e-85 280
Msa0116520 AT5G60100.2 46.000 100 38 4 647 737 419 511 4.86e-14 75.9
Msa0116520 AT2G46790.3 57.463 134 57 0 73 206 25 158 4.79e-51 185
Msa0116520 AT2G46790.1 57.463 134 57 0 73 206 25 158 5.79e-51 185
Msa0116520 AT2G46790.1 49.020 102 45 4 643 744 371 465 2.53e-17 85.9
Msa0116520 AT5G24470.1 59.701 134 54 0 73 206 38 171 9.57e-50 184
Msa0116520 AT5G24470.1 66.038 53 15 1 691 743 508 557 3.08e-13 73.6
Msa0116520 AT5G61380.1 40.625 128 76 0 79 206 13 140 1.06e-23 107
Msa0116520 AT5G61380.1 53.226 62 26 1 676 737 517 575 3.20e-12 70.5
Msa0116520 AT3G16857.1 35.227 176 103 3 85 254 37 207 3.36e-22 102
Msa0116520 AT3G16857.2 35.227 176 103 3 85 254 37 207 3.41e-22 102
Msa0116520 AT2G25180.1 33.702 181 87 5 85 261 17 168 1.64e-21 99.8
Msa0116520 AT4G31920.1 38.017 121 72 2 85 205 17 134 2.61e-19 92.8
Msa0116520 AT2G46670.1 49.020 102 45 4 643 744 86 180 1.88e-18 84.3
Msa0116520 AT2G01760.1 37.705 122 74 1 85 206 11 130 5.05e-18 87.4
Msa0116520 AT1G67710.1 35.252 139 83 2 85 219 11 146 9.85e-18 87.8
Msa0116520 AT2G46790.5 49.020 102 45 4 643 744 214 308 3.65e-17 83.6
Msa0116520 AT2G46790.4 49.020 102 45 4 643 744 214 308 3.65e-17 83.6
Msa0116520 AT2G46790.2 49.020 102 45 4 643 744 254 348 4.30e-17 84.0
Msa0116520 AT2G46790.2 70.732 41 12 0 166 206 1 41 4.81e-15 77.8
Msa0116520 AT3G16857.3 35.461 141 80 3 120 254 2 137 1.12e-15 81.6
Msa0116520 AT3G62670.1 34.524 168 101 6 77 242 34 194 1.34e-14 77.4
Msa0116520 AT1G10470.1 31.724 145 84 2 80 212 29 170 1.37e-14 75.1
Msa0116520 AT2G01760.2 37.168 113 68 2 94 206 49 158 6.77e-14 75.1
Msa0116520 AT5G58080.1 31.967 122 79 1 85 206 18 135 9.17e-14 75.5
Msa0116520 AT1G59940.2 34.351 131 71 2 87 205 127 254 2.21e-13 72.4
Msa0116520 AT1G10470.3 31.944 144 87 2 80 213 15 157 3.47e-13 70.5
Msa0116520 AT5G62920.1 35.772 123 64 4 77 199 41 148 4.00e-13 68.9
Msa0116520 AT1G59940.1 33.835 133 73 2 85 205 33 162 6.57e-13 69.3
Msa0116520 AT3G56380.1 33.077 130 77 2 85 204 20 149 1.00e-12 67.0
Msa0116520 AT3G48100.1 35.433 127 68 4 85 199 25 149 1.58e-12 67.4
Msa0116520 AT1G19050.1 33.333 132 75 2 85 205 24 153 2.22e-12 67.4
Msa0116520 AT2G40670.1 32.593 135 79 2 81 203 25 159 5.64e-12 65.1
Msa0116520 AT3G56380.2 32.824 131 77 3 85 204 20 150 1.29e-11 63.9
Msa0116520 AT3G57040.2 28.986 138 79 2 87 205 11 148 1.83e-11 65.1
Msa0116520 AT3G57040.1 28.986 138 79 2 87 205 11 148 1.83e-11 65.1
Msa0116520 AT1G74890.1 31.618 136 78 2 77 212 34 154 4.22e-11 63.5

Find 245 sgRNAs with CRISPR-Local

Find 835 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGATTTAATAGATTTC+TGG 0.104631 1_3:-35529454 None:intergenic
TGCACTTCTATACAAGATTA+TGG 0.158802 1_3:+35528813 Msa0116520:CDS
AGAAGTTGGGTCTTCTATTT+AGG 0.167561 1_3:-35532484 None:intergenic
CCAGATTGATTCTCACAATT+AGG 0.182320 1_3:-35532377 None:intergenic
CAATGCAACTATTCTGGTTT+TGG 0.182728 1_3:+35525007 Msa0116520:five_prime_UTR
TAGTGTCTTGCAGTTGTATT+TGG 0.195227 1_3:+35526294 Msa0116520:intron
TCCTAACCTGGGATGAGTTT+GGG 0.198333 1_3:+35535636 Msa0116520:three_prime_UTR
ATTGCAAGCTTGGAAGATTT+TGG 0.231070 1_3:+35528726 Msa0116520:CDS
GATGGTTCCTCCAGTCTTAA+AGG 0.244142 1_3:+35531307 Msa0116520:CDS
CTCTCTCCACGTGGCACATT+TGG 0.258607 1_3:+35524582 Msa0116520:five_prime_UTR
TGCTAGCATCATTTGAGTTC+TGG 0.274365 1_3:-35532888 None:intergenic
AGAAAGCAATGCAACTATTC+TGG 0.277886 1_3:+35525001 Msa0116520:five_prime_UTR
AATGGAAGCAATGGACAAAA+TGG 0.284536 1_3:+35533333 Msa0116520:CDS
CTCTCTTATAACTGCAGATT+TGG 0.286096 1_3:-35532950 None:intergenic
TTCCTAACCTGGGATGAGTT+TGG 0.289056 1_3:+35535635 Msa0116520:three_prime_UTR
TGCTAGCAACAACATTGATA+TGG 0.296871 1_3:+35532903 Msa0116520:CDS
AAAGGAGTGTCTAGAGAAAA+AGG 0.305223 1_3:+35531325 Msa0116520:CDS
CAGATTGATTCTCACAATTA+GGG 0.310638 1_3:-35532376 None:intergenic
AAAACCTGTGGCAGCATGTT+TGG 0.312351 1_3:+35529073 Msa0116520:CDS
CCTTGATTTAATAGATTTCT+GGG 0.316876 1_3:-35529453 None:intergenic
AATAATCGGTAATTGAATTA+TGG 0.321560 1_3:-35524758 None:intergenic
GAAGTTGGGTCTTCTATTTA+GGG 0.323812 1_3:-35532483 None:intergenic
GAAGATAATGCGGAAGTTAG+AGG 0.324713 1_3:-35524665 None:intergenic
CTTGCAGTTGTATTTGGGTT+GGG 0.327297 1_3:+35526300 Msa0116520:intron
AGAAGCTGGTCCTGCAATTC+AGG 0.327601 1_3:+35532589 Msa0116520:CDS
GTGGCAATGCCTGGTTTATC+AGG 0.332763 1_3:+35528787 Msa0116520:CDS
TGAAAAGTTTGATAACAATT+CGG 0.339114 1_3:+35529481 Msa0116520:CDS
GAAAAGTTTGATAACAATTC+GGG 0.346605 1_3:+35529482 Msa0116520:CDS
TTATAATAATGACTTAATAA+TGG 0.348960 1_3:+35524825 Msa0116520:five_prime_UTR
CAGCAAATGGATTGCAAGCT+TGG 0.350061 1_3:+35528716 Msa0116520:CDS
GCATTTGACACAATGGCGTT+TGG 0.350777 1_3:+35535222 Msa0116520:three_prime_UTR
GATGTCATCTCATGACTCTA+TGG 0.359807 1_3:+35528978 Msa0116520:CDS
GACAGCAACAATGGACTTGC+TGG 0.359847 1_3:+35533393 Msa0116520:CDS
TTTACATATTAGATCCCTTA+AGG 0.361725 1_3:+35526637 Msa0116520:CDS
GAGCAAGATAATGGAAGTTT+AGG 0.362759 1_3:+35529515 Msa0116520:CDS
GTAACTTCTAAGCTGTTATT+AGG 0.363149 1_3:-35532811 None:intergenic
TCCCACTGAGAGCCTGATTT+AGG 0.367118 1_3:-35531212 None:intergenic
ACGTGGAGAGAGATATTTCC+AGG 0.369726 1_3:-35524571 None:intergenic
TGACAAGGGTTCTGCTACTC+AGG 0.372499 1_3:+35533116 Msa0116520:CDS
TGCAGAACCTGAACCGGGTT+TGG 0.380213 1_3:-35535583 None:intergenic
AATTTGTTCATTGAATTTAG+AGG 0.382948 1_3:-35532336 None:intergenic
TTGGTTGTTGATGCCTCTGC+TGG 0.385063 1_3:-35532973 None:intergenic
CTCAAGGGGCAATTATTTGT+TGG 0.386253 1_3:+35526606 Msa0116520:CDS
GCACTTCTATACAAGATTAT+GGG 0.386285 1_3:+35528814 Msa0116520:CDS
GCGGTGACCAAACCCGGTTC+AGG 0.386805 1_3:+35535576 Msa0116520:three_prime_UTR
TAATGTTGCAGAACCTGAAC+CGG 0.388134 1_3:-35535589 None:intergenic
TTTAAGCTCATTCTTGCGTA+TGG 0.388945 1_3:-35529052 None:intergenic
CCGGGTTTGGTCACCGCAAC+GGG 0.390341 1_3:-35535570 None:intergenic
CACTACCATCACCATTGTTC+AGG 0.390653 1_3:-35529538 None:intergenic
GGTTATAATTATCGCGAGCT+TGG 0.390997 1_3:+35526369 Msa0116520:five_prime_UTR
ACAATGGCGTTTGGGATAAC+CGG 0.391367 1_3:+35535231 Msa0116520:three_prime_UTR
TTCCGTTCATCCTGAATTGC+AGG 0.392365 1_3:-35532599 None:intergenic
ACTCCACAAGCAAGACCTTA+AGG 0.392485 1_3:-35526652 None:intergenic
CATTTGACACAATGGCGTTT+GGG 0.392547 1_3:+35535223 Msa0116520:three_prime_UTR
GTTATAATTATCGCGAGCTT+GGG 0.393066 1_3:+35526370 Msa0116520:five_prime_UTR
GTTGTCAATATCTGAGAAGT+TGG 0.394245 1_3:-35532498 None:intergenic
AGCAATGATGAGCAAGATAA+TGG 0.400711 1_3:+35529506 Msa0116520:CDS
GCGGTTCCAGTCAAAATTGC+AGG 0.406686 1_3:+35532281 Msa0116520:intron
TGGAGTGACTGATGGAGTTA+AGG 0.413525 1_3:+35526523 Msa0116520:CDS
GCATCATTTGAGTTCTGGTT+AGG 0.415598 1_3:-35532883 None:intergenic
GTCAACTTCTACAGCTCGTT+TGG 0.415675 1_3:-35531186 None:intergenic
AAATATTACATGAAGACTTC+TGG 0.415703 1_3:-35535266 None:intergenic
CTCACTTGCATTACCATTCG+AGG 0.416999 1_3:-35535176 None:intergenic
TCAAGGGGCAATTATTTGTT+GGG 0.420288 1_3:+35526607 Msa0116520:CDS
TTGGTCAGCGTTTGCGGGAT+GGG 0.420714 1_3:+35526447 Msa0116520:CDS
GAAGCAACGCAGTGACAATA+TGG 0.423326 1_3:-35526691 None:intergenic
CATCATGCTCAGGTGGCAAC+TGG 0.423674 1_3:-35533188 None:intergenic
GTCTTTAAGTGTTTGTCAAA+GGG 0.426456 1_3:+35529006 Msa0116520:CDS
TACTACATCATAGTAATAAT+CGG 0.427736 1_3:-35524772 None:intergenic
AAGAACTTGGTCAGCGTTTG+CGG 0.431358 1_3:+35526441 Msa0116520:CDS
GAAGATTCGGCATCATGCTC+AGG 0.431544 1_3:-35533198 None:intergenic
CTTCGCAATTGTAGTTATGA+AGG 0.432435 1_3:+35526710 Msa0116520:CDS
AGTGTCTTGCAGTTGTATTT+GGG 0.434979 1_3:+35526295 Msa0116520:intron
CTTTCTTTCCTTCAGTCTAG+TGG 0.435646 1_3:+35529404 Msa0116520:intron
ATCCCTTAAGGTCTTGCTTG+TGG 0.436804 1_3:+35526649 Msa0116520:CDS
TTAACTGAGGTGGCAATGCC+TGG 0.438214 1_3:+35528778 Msa0116520:CDS
TTCCCTGCATATTTCAGCAT+TGG 0.441824 1_3:-35531282 None:intergenic
TAAAATGAGATCAATATGAT+TGG 0.443706 1_3:-35528758 None:intergenic
GGAGTTAAGGTTGGTGAGGG+AGG 0.444636 1_3:+35526536 Msa0116520:CDS
TGGGATAACCGGACGGGAAA+GGG 0.445328 1_3:+35535242 Msa0116520:three_prime_UTR
TTCTACAGCTCGTTTGGTCC+AGG 0.448107 1_3:-35531180 None:intergenic
CTTCTGGACCCTTTCCCGTC+CGG 0.448655 1_3:-35535250 None:intergenic
AACTTAAATGAAGGAGTAGC+TGG 0.450112 1_3:+35526476 Msa0116520:CDS
TCTTGCAGTTGTATTTGGGT+TGG 0.452421 1_3:+35526299 Msa0116520:intron
AATGGACTTGCTGGGAATAG+TGG 0.453499 1_3:+35533402 Msa0116520:CDS
TGGGCTGGAAAGCAGACGTT+TGG 0.453554 1_3:-35533005 None:intergenic
AGAACTTGGTCAGCGTTTGC+GGG 0.454509 1_3:+35526442 Msa0116520:CDS
TTTCTTTCCTTCAGTCTAGT+GGG 0.456206 1_3:+35529405 Msa0116520:intron
TCTAGACACTCCTTTAAGAC+TGG 0.457847 1_3:-35531317 None:intergenic
AGATTGAGTTGGTGAGGGAT+TGG 0.461397 1_3:-35524636 None:intergenic
TTCCTTCAGTCTAGTGGGAG+TGG 0.461821 1_3:+35529410 Msa0116520:intron
GAAGTTGACAGTCCTAAATC+AGG 0.462528 1_3:+35531200 Msa0116520:CDS
CTCCACAAGCAAGACCTTAA+GGG 0.463153 1_3:-35526651 None:intergenic
TCAGTTATTGAAGCAGCAAA+TGG 0.463336 1_3:+35528703 Msa0116520:intron
AGTATCAATAGAAGTGCTTC+AGG 0.463935 1_3:+35533303 Msa0116520:CDS
CCTAATTGTGAGAATCAATC+TGG 0.463977 1_3:+35532377 Msa0116520:CDS
AGTGCCAGTTGAAGGTAATA+CGG 0.464184 1_3:+35533272 Msa0116520:CDS
CCCGTTGCGGTGACCAAACC+CGG 0.472221 1_3:+35535570 Msa0116520:three_prime_UTR
AGAGAGAGATTGAGTTGGTG+AGG 0.472417 1_3:-35524642 None:intergenic
CTCTTGAGCTCAGTTTAAAG+AGG 0.474120 1_3:+35532552 Msa0116520:CDS
AGTGGTGATGCTAGTGGAAA+TGG 0.475297 1_3:+35533426 Msa0116520:CDS
ATTCCAATGCTGAAATATGC+AGG 0.475867 1_3:+35531279 Msa0116520:CDS
TTGCAGTTGTATTTGGGTTG+GGG 0.479778 1_3:+35526301 Msa0116520:intron
AGTCTTTAAGTGTTTGTCAA+AGG 0.479846 1_3:+35529005 Msa0116520:CDS
AGTCACCATTGACACTCATC+TGG 0.480036 1_3:-35526415 None:intergenic
TTGGGATAACCGGACGGGAA+AGG 0.481595 1_3:+35535241 Msa0116520:three_prime_UTR
AAGGTTGGTGAGGGAGGGAA+TGG 0.483694 1_3:+35526542 Msa0116520:CDS
AGAGGAGAGAGAGATTGAGT+TGG 0.484260 1_3:-35524647 None:intergenic
TTGTCAATATCTGAGAAGTT+GGG 0.484449 1_3:-35532497 None:intergenic
TTAAGCTCATTCTTGCGTAT+GGG 0.487300 1_3:-35529051 None:intergenic
TTTCCCGTATTACCTTCAAC+TGG 0.488361 1_3:-35533276 None:intergenic
TTCAATGAACAAATTAATAG+AGG 0.488504 1_3:+35532344 Msa0116520:CDS
TGAAATATGCAGGGAAAAGA+TGG 0.491685 1_3:+35531289 Msa0116520:CDS
AGTGGGAGTGGCAGTGAAAG+TGG 0.491905 1_3:+35529422 Msa0116520:CDS
GAGAGAGATTGAGTTGGTGA+GGG 0.494164 1_3:-35524641 None:intergenic
TCAAAACAAGAATTCTCAAA+GGG 0.500542 1_3:+35533467 Msa0116520:CDS
CCCAGAAATCTATTAAATCA+AGG 0.500800 1_3:+35529453 Msa0116520:CDS
TCATCAAATCATTGCCAACC+TGG 0.502204 1_3:+35524553 Msa0116520:five_prime_UTR
CCTAACCTGGGATGAGTTTG+GGG 0.502579 1_3:+35535637 Msa0116520:three_prime_UTR
AGCAGCGCTGCAATTAATGC+TGG 0.502976 1_3:+35533357 Msa0116520:CDS
GCTAGCAACAACATTGATAT+GGG 0.503896 1_3:+35532904 Msa0116520:CDS
CCCCAAACTCATCCCAGGTT+AGG 0.504119 1_3:-35535637 None:intergenic
CTTGGTCAGCGTTTGCGGGA+TGG 0.504234 1_3:+35526446 Msa0116520:CDS
GGGAGACTTCTTAGCATTGA+AGG 0.505204 1_3:-35532761 None:intergenic
ATTTGTTCATTGAATTTAGA+GGG 0.505219 1_3:-35532335 None:intergenic
TCCTCCAAACATGCTGCCAC+AGG 0.506809 1_3:-35529077 None:intergenic
GTGGTCAAAGTGCCAGTTGA+AGG 0.508886 1_3:+35533264 Msa0116520:CDS
GGTAAAAGCATTATTAGCAG+TGG 0.510774 1_3:-35532929 None:intergenic
AAAACAGCTATATATATAAG+TGG 0.512540 1_3:-35535686 None:intergenic
GATTGGTGACGTGGATGAAG+TGG 0.512582 1_3:-35524619 None:intergenic
ATGGAAGCAATGGACAAAAT+GGG 0.515017 1_3:+35533334 Msa0116520:CDS
AGAGAGGTGCTTTCATAAGC+AGG 0.516010 1_3:+35533533 Msa0116520:CDS
CAACATTATAGAGACGGCTT+AGG 0.516236 1_3:+35535604 Msa0116520:three_prime_UTR
AGAGTTGCTTCCGACACATC+CGG 0.520860 1_3:-35532785 None:intergenic
GGGCAATTATTTGTTGGGAG+AGG 0.522794 1_3:+35526612 Msa0116520:CDS
TCATTTGAGTTCTGGTTAGG+AGG 0.525127 1_3:-35532880 None:intergenic
GATGATGAAGTGAAATGTAA+TGG 0.525442 1_3:+35526503 Msa0116520:CDS
TTCAGGTTCGATATCAGAGC+AGG 0.528122 1_3:+35535101 Msa0116520:intron
ACAAATTAATAGAGGACAGA+TGG 0.528850 1_3:+35532352 Msa0116520:CDS
GGAAGCAACAATGGAAGCAA+TGG 0.529487 1_3:+35533324 Msa0116520:CDS
GGGAAGAACAACTTAAATGA+AGG 0.530123 1_3:+35526467 Msa0116520:CDS
GAGTTAAGGTTGGTGAGGGA+GGG 0.530743 1_3:+35526537 Msa0116520:CDS
AACTTGAGCACAAGTGCTGT+CGG 0.532765 1_3:-35531252 None:intergenic
ATGTCATCTCATGACTCTAT+GGG 0.536687 1_3:+35528979 Msa0116520:CDS
CTGATCAGTCTGCTTTCTCA+AGG 0.536827 1_3:+35532636 Msa0116520:CDS
CTTTGCATTTGAGAGTCAGA+AGG 0.538723 1_3:-35532446 None:intergenic
GTGCCAGTTGAAGGTAATAC+GGG 0.540221 1_3:+35533273 Msa0116520:CDS
ACCGGGTTTGGTCACCGCAA+CGG 0.540221 1_3:-35535571 None:intergenic
TACCGCAGCAACAGTCTCAA+GGG 0.542656 1_3:+35526591 Msa0116520:CDS
ACTTGAGCACAAGTGCTGTC+GGG 0.543651 1_3:-35531251 None:intergenic
CCTAGAAAAGTTGAAGAAGC+TGG 0.545226 1_3:+35532575 Msa0116520:CDS
TTCATTGCAATGTCCACCTG+TGG 0.545322 1_3:+35524501 Msa0116520:five_prime_UTR
ACCTGTGGCAGCATGTTTGG+AGG 0.552529 1_3:+35529076 Msa0116520:CDS
GGTATCCAGATGAGTGTCAA+TGG 0.554780 1_3:+35526410 Msa0116520:CDS
ACGTGGATAAGATCAAAAGA+AGG 0.556582 1_3:-35524528 None:intergenic
ACATGTCAACAGACTTGATG+TGG 0.557814 1_3:+35532310 Msa0116520:CDS
AAGATCTTGAAGATTTAGAT+CGG 0.559348 1_3:-35524477 None:intergenic
ATACACACGAAGAAGAAGAT+TGG 0.559695 1_3:-35525081 None:intergenic
GCTATATATATAAGTGGAGA+GGG 0.563591 1_3:-35535680 None:intergenic
GTACCGCAGCAACAGTCTCA+AGG 0.568297 1_3:+35526590 Msa0116520:CDS
ATCAAAACAAGAATTCTCAA+AGG 0.571810 1_3:+35533466 Msa0116520:CDS
GGCGTTTGGGATAACCGGAC+GGG 0.572379 1_3:+35535236 Msa0116520:three_prime_UTR
AAATGTAATGGAGTGACTGA+TGG 0.573227 1_3:+35526515 Msa0116520:CDS
AAAAGAAGGGTGGCCACAGG+TGG 0.575359 1_3:-35524514 None:intergenic
AATGTTGCAGAACCTGAACC+GGG 0.576970 1_3:-35535588 None:intergenic
GATTAGTGATACTTATGAGC+TGG 0.578423 1_3:+35524849 Msa0116520:five_prime_UTR
ATCAAAAGAAGGGTGGCCAC+AGG 0.579564 1_3:-35524517 None:intergenic
GGAGAGAGATATTTCCAGGT+TGG 0.579669 1_3:-35524567 None:intergenic
TGACAATGGTAGTGGCACTC+AGG 0.582901 1_3:+35529559 Msa0116520:CDS
GTCCTGCAATTCAGGATGAA+CGG 0.586027 1_3:+35532597 Msa0116520:CDS
GATGGAGTTAAGGTTGGTGA+GGG 0.589139 1_3:+35526533 Msa0116520:CDS
GTGACTGATGGAGTTAAGGT+TGG 0.591130 1_3:+35526527 Msa0116520:CDS
TCCTAAATCAGGCTCTCAGT+GGG 0.591373 1_3:+35531211 Msa0116520:CDS
AAGTCTCCCACCGGATGTGT+CGG 0.592788 1_3:+35532775 Msa0116520:CDS
AGTGCTTCAGGAAGCAACAA+TGG 0.594073 1_3:+35533315 Msa0116520:CDS
AGATACGACAACAACAATCC+TGG 0.594626 1_3:+35533080 Msa0116520:CDS
AGCGCTGCAATTAATGCTGG+AGG 0.596114 1_3:+35533360 Msa0116520:CDS
TTCCAATGCTGAAATATGCA+GGG 0.597764 1_3:+35531280 Msa0116520:CDS
GCATGTTAGCAACATTGCTG+TGG 0.597791 1_3:-35533161 None:intergenic
AGTGCAATGCCTGATAAACC+AGG 0.599268 1_3:-35528796 None:intergenic
CTGTTGTTGCTCCACACTGT+GGG 0.599543 1_3:+35533232 Msa0116520:CDS
TTGGTGAGGGATTGGTGACG+TGG 0.601091 1_3:-35524628 None:intergenic
GTTTGGTCACCGCAACGGGT+AGG 0.602831 1_3:-35535566 None:intergenic
ACTGTTGTTGCTCCACACTG+TGG 0.604864 1_3:+35533231 Msa0116520:CDS
TTTGCATTTGAGAGTCAGAA+GGG 0.605063 1_3:-35532445 None:intergenic
TACTTGCTGCTGAACAGAAG+AGG 0.605168 1_3:-35526570 None:intergenic
GATGCTAGTGGAAATGGAAG+TGG 0.606551 1_3:+35533432 Msa0116520:CDS
TGATGGAGTTAAGGTTGGTG+AGG 0.607226 1_3:+35526532 Msa0116520:CDS
TGGCGTTTGGGATAACCGGA+CGG 0.607291 1_3:+35535235 Msa0116520:three_prime_UTR
AAAGAAAGGAGAGAAAAGAG+AGG 0.608085 1_3:+35533517 Msa0116520:CDS
ACAAACATAGACAGCAACAA+TGG 0.609596 1_3:+35533384 Msa0116520:CDS
ACAGCAACAATGGACTTGCT+GGG 0.609766 1_3:+35533394 Msa0116520:CDS
GACAACCCCAAACTCATCCC+AGG 0.610162 1_3:-35535642 None:intergenic
CTTGCTGGGAATAGTGGCAG+TGG 0.611874 1_3:+35533408 Msa0116520:CDS
GATATTCAATCTCATTCTAG+TGG 0.613980 1_3:+35532853 Msa0116520:CDS
TTTGTGCGACAGTCCTCGAA+TGG 0.614472 1_3:+35535163 Msa0116520:CDS
TTTAAACTGAGCTCAAGAGA+TGG 0.614604 1_3:-35532548 None:intergenic
AGCTATATATATAAGTGGAG+AGG 0.615242 1_3:-35535681 None:intergenic
CAACGCAGTGACAATATGGC+GGG 0.615660 1_3:-35526687 None:intergenic
AATGGTGACTGTAAAGAACT+TGG 0.617086 1_3:+35526428 Msa0116520:CDS
GTTCTGCAACATTATAGAGA+CGG 0.618524 1_3:+35535598 Msa0116520:three_prime_UTR
CTCGAATGGTAATGCAAGTG+AGG 0.619394 1_3:+35535177 Msa0116520:CDS
TTTGTTCATTGAATTTAGAG+GGG 0.620301 1_3:-35532334 None:intergenic
GCCCCTTGAGACTGTTGCTG+CGG 0.622409 1_3:-35526593 None:intergenic
GATTCGGCATCATGCTCAGG+TGG 0.622530 1_3:-35533195 None:intergenic
ATGTGAGACAACTTGTTGAG+AGG 0.623924 1_3:-35533049 None:intergenic
AAATGAAGGAGTAGCTGGAG+AGG 0.626419 1_3:+35526481 Msa0116520:CDS
AGTGGCAGTGGTGATGCTAG+TGG 0.626932 1_3:+35533420 Msa0116520:CDS
GAACAACGACCACGATATCG+AGG 0.628327 1_3:+35535136 Msa0116520:CDS
GATGGTAGTGACAATGGTAG+TGG 0.629804 1_3:+35529551 Msa0116520:CDS
ACAAATTGCCCTCGATATCG+TGG 0.630115 1_3:-35535145 None:intergenic
GTTGCTTCCGACACATCCGG+TGG 0.630609 1_3:-35532782 None:intergenic
ACTTCTAAGCTGTTATTAGG+CGG 0.632200 1_3:-35532808 None:intergenic
TTAGGCCTGAACAATGGTGA+TGG 0.633257 1_3:+35529533 Msa0116520:CDS
AGATTATGGGCCACCCAACA+CGG 0.633500 1_3:+35528827 Msa0116520:CDS
TGTTCAAGACCTACCCGTTG+CGG 0.633864 1_3:+35535557 Msa0116520:three_prime_UTR
GGCACCACCTAAAATTGACA+AGG 0.635166 1_3:+35533101 Msa0116520:CDS
CGTGGATAAGATCAAAAGAA+GGG 0.635974 1_3:-35524527 None:intergenic
TGGTGACGTGGATGAAGTGG+AGG 0.636964 1_3:-35524616 None:intergenic
CAAAGGTACTAATAATGATG+AGG 0.638016 1_3:+35532520 Msa0116520:CDS
ACACTGTGGGTCATCAAATG+TGG 0.640190 1_3:+35533245 Msa0116520:CDS
AGACACTCCTTTAAGACTGG+AGG 0.640992 1_3:-35531314 None:intergenic
GCGCTGCAATTAATGCTGGA+GGG 0.641325 1_3:+35533361 Msa0116520:CDS
GTCCTAAATCAGGCTCTCAG+TGG 0.647285 1_3:+35531210 Msa0116520:CDS
AATGGTGATGGTAGTGACAA+TGG 0.650813 1_3:+35529545 Msa0116520:CDS
TCACAGAGCATTTGACACAA+TGG 0.656014 1_3:+35535215 Msa0116520:three_prime_UTR
AGACTTCTTAGCATTGAAGG+TGG 0.657516 1_3:-35532758 None:intergenic
AGTTATAAGAGAGCCAGCAG+AGG 0.658218 1_3:+35532960 Msa0116520:CDS
TTCTCAGATATTGACAACAA+AGG 0.660645 1_3:+35532503 Msa0116520:CDS
AATGCTAAGAAGTCTCCCAC+CGG 0.662726 1_3:+35532766 Msa0116520:CDS
ACCGCAGCAACAGTCTCAAG+GGG 0.669084 1_3:+35526592 Msa0116520:CDS
GGAAGTTTAGGCCTGAACAA+TGG 0.671051 1_3:+35529527 Msa0116520:CDS
AACAACGACCACGATATCGA+GGG 0.671078 1_3:+35535137 Msa0116520:CDS
GGATAAGATCAAAAGAAGGG+TGG 0.680724 1_3:-35524524 None:intergenic
TTGCTTCCGACACATCCGGT+GGG 0.683631 1_3:-35532781 None:intergenic
GCAACGCAGTGACAATATGG+CGG 0.685975 1_3:-35526688 None:intergenic
CATGTCAACAGACTTGATGT+GGG 0.686791 1_3:+35532311 Msa0116520:CDS
GCAATGATTTGATGATGACG+TGG 0.691661 1_3:-35524545 None:intergenic
ACATTTGATGACCCACAGTG+TGG 0.694810 1_3:-35533243 None:intergenic
TCTGACTCTCAAATGCAAAG+CGG 0.707947 1_3:+35532449 Msa0116520:CDS
GAGCTTAGGAGAAGATAATG+CGG 0.718976 1_3:-35524675 None:intergenic
CTTGTTGAGAGGTACACATG+AGG 0.720635 1_3:-35533038 None:intergenic
GCACCACCTAAAATTGACAA+GGG 0.725107 1_3:+35533102 Msa0116520:CDS
TGGAAATATCTCTCTCCACG+TGG 0.727285 1_3:+35524573 Msa0116520:five_prime_UTR
AATGTTCCAAATGTGCCACG+TGG 0.769132 1_3:-35524588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATAATGACTTAATAA+TGG + chr1_3:35524825-35524844 Msa0116520:five_prime_UTR 10.0%
!!! GTTTTTTTTAATTTTTGATT+TGG + chr1_3:35525228-35525247 Msa0116520:intron 10.0%
!!! TTTTTTAATTAAGATAAGAT+AGG - chr1_3:35525999-35526018 None:intergenic 10.0%
!!! TTATATATGTAATATTTTGT+TGG + chr1_3:35529590-35529609 Msa0116520:intron 10.0%
!! TGAAAAAAAGATTAATAATA+TGG - chr1_3:35533651-35533670 None:intergenic 10.0%
!! AACATAAAAGCTTATTTATT+TGG + chr1_3:35525490-35525509 Msa0116520:intron 15.0%
!!! TTATTGAAATTTTTAGTGTT+TGG + chr1_3:35525648-35525667 Msa0116520:intron 15.0%
!!! ATATCTCATTTAATCTTTTT+TGG - chr1_3:35527188-35527207 None:intergenic 15.0%
!! AGTATAATATTGTTTATGTT+AGG + chr1_3:35528471-35528490 Msa0116520:intron 15.0%
!! GTATAATATTGTTTATGTTA+GGG + chr1_3:35528472-35528491 Msa0116520:intron 15.0%
!! TAAAACAGTAATATAATGTT+AGG - chr1_3:35529137-35529156 None:intergenic 15.0%
!! TAATATATATAGCTATGTAT+TGG - chr1_3:35529170-35529189 None:intergenic 15.0%
!!! TCTATCCAAATTTTTTTAAA+AGG - chr1_3:35529287-35529306 None:intergenic 15.0%
!! AAATACTATAAGTCAAATTA+TGG - chr1_3:35530177-35530196 None:intergenic 15.0%
!! AAATTAAAATATTGTACACA+TGG - chr1_3:35531760-35531779 None:intergenic 15.0%
!! TTAAATAAGGAAATTAACAT+AGG - chr1_3:35531797-35531816 None:intergenic 15.0%
!! CTAATGTGTAATTAAATATT+TGG + chr1_3:35535319-35535338 Msa0116520:intron 15.0%
!! AGAAAATAGTTTGACAAAAA+TGG - chr1_3:35524723-35524742 None:intergenic 20.0%
!! AATAATCGGTAATTGAATTA+TGG - chr1_3:35524761-35524780 None:intergenic 20.0%
!! TACTACATCATAGTAATAAT+CGG - chr1_3:35524775-35524794 None:intergenic 20.0%
!!! TGAATTTTTGTTTAATGTGA+AGG + chr1_3:35524967-35524986 Msa0116520:intron 20.0%
!! GACTTACTGAAAATAAAAAA+CGG - chr1_3:35525109-35525128 None:intergenic 20.0%
!! TTAAGTAATTCAGCTTAATT+AGG + chr1_3:35525148-35525167 Msa0116520:intron 20.0%
!! TAAGTAATTCAGCTTAATTA+GGG + chr1_3:35525149-35525168 Msa0116520:intron 20.0%
!! TTTGAAAGTTACTTCAATTA+AGG + chr1_3:35525172-35525191 Msa0116520:intron 20.0%
!!! TAATTTTTTCCAAGATAACA+TGG + chr1_3:35525738-35525757 Msa0116520:intron 20.0%
!!! AATTTTTTCCAAGATAACAT+GGG + chr1_3:35525739-35525758 Msa0116520:intron 20.0%
!! TAGCTTATCAAAATAAGAAT+AGG + chr1_3:35525811-35525830 Msa0116520:intron 20.0%
!! TATAAGTTTGTGAGAAAAAA+AGG + chr1_3:35525849-35525868 Msa0116520:intron 20.0%
!!! CTATCATCTATTTTTTGTTA+TGG + chr1_3:35526138-35526157 Msa0116520:intron 20.0%
!!! GTTTTATTGAAATACTCTTA+AGG + chr1_3:35526790-35526809 Msa0116520:intron 20.0%
!!! AATTAATTGAAGAGTATGTT+AGG - chr1_3:35527077-35527096 None:intergenic 20.0%
!! TTCTATGATAATAAATACTC+AGG - chr1_3:35527254-35527273 None:intergenic 20.0%
!!! ATATATTCAAGTGTTGTATT+TGG - chr1_3:35527420-35527439 None:intergenic 20.0%
!! AAAATTAAAGAAAAATAGGC+AGG - chr1_3:35528633-35528652 None:intergenic 20.0%
!! GAGGAAAATTAAAGAAAAAT+AGG - chr1_3:35528637-35528656 None:intergenic 20.0%
!! TAAAATGAGATCAATATGAT+TGG - chr1_3:35528761-35528780 None:intergenic 20.0%
!!! ATCCAAATTTTTTTAAAAGG+TGG - chr1_3:35529284-35529303 None:intergenic 20.0%
!!! AAGTTTTTGTGATATTTTCA+TGG + chr1_3:35529326-35529345 Msa0116520:intron 20.0%
!!! TGAAAAGTTTGATAACAATT+CGG + chr1_3:35529481-35529500 Msa0116520:CDS 20.0%
!! TATTTAGATTCTTTCTAACA+TGG - chr1_3:35529633-35529652 None:intergenic 20.0%
!! ATGTTAGAAAGAATCTAAAT+AGG + chr1_3:35529632-35529651 Msa0116520:intron 20.0%
!!! ATCTTCTGGAAAAATAATTA+TGG - chr1_3:35529859-35529878 None:intergenic 20.0%
!!! TGTTCTTATTTTTGTCATTT+TGG + chr1_3:35529912-35529931 Msa0116520:intron 20.0%
!! ATAATGATAACTAAGTAGTA+TGG + chr1_3:35530433-35530452 Msa0116520:intron 20.0%
!! TCGTATAATATCTTTATATC+AGG - chr1_3:35530525-35530544 None:intergenic 20.0%
!! ATATAAAGATATTATACGAG+TGG + chr1_3:35530526-35530545 Msa0116520:intron 20.0%
!!! CATTTTTACATTATGTGAAA+AGG - chr1_3:35530718-35530737 None:intergenic 20.0%
!! TAGTTTAAACTTTAATGCAA+AGG + chr1_3:35530885-35530904 Msa0116520:intron 20.0%
!!! ATAACACAAATACAGTTTTT+GGG - chr1_3:35531423-35531442 None:intergenic 20.0%
!! TTTAAACAATTTCTTCATGA+TGG + chr1_3:35531565-35531584 Msa0116520:intron 20.0%
!!! ATTTAGATTTTGAATTCATC+TGG + chr1_3:35531686-35531705 Msa0116520:intron 20.0%
!!! TTTAGATTTTGAATTCATCT+GGG + chr1_3:35531687-35531706 Msa0116520:intron 20.0%
!! GATAATTTACTGTAAAAATG+CGG + chr1_3:35532262-35532281 Msa0116520:intron 20.0%
!! ATTTGTTCATTGAATTTAGA+GGG - chr1_3:35532338-35532357 None:intergenic 20.0%
!!! AATTTGTTCATTGAATTTAG+AGG - chr1_3:35532339-35532358 None:intergenic 20.0%
!! TTCAATGAACAAATTAATAG+AGG + chr1_3:35532344-35532363 Msa0116520:CDS 20.0%
!!! ATTCTGAGTTTTTTTGAAAA+TGG + chr1_3:35532685-35532704 Msa0116520:intron 20.0%
!!! TTCTGAGTTTTTTTGAAAAT+GGG + chr1_3:35532686-35532705 Msa0116520:intron 20.0%
!!! ACTTATAAGTATTTTTCTAC+AGG + chr1_3:35532728-35532747 Msa0116520:intron 20.0%
!!! TTTTTGGCGAAATTTAATTA+GGG - chr1_3:35533499-35533518 None:intergenic 20.0%
!!! TTTTTTGGCGAAATTTAATT+AGG - chr1_3:35533500-35533519 None:intergenic 20.0%
!! TTATTCATTGAGCTTAAATA+TGG + chr1_3:35533590-35533609 Msa0116520:intron 20.0%
!!! AAAACATCATATTCTTTTGT+GGG - chr1_3:35533622-35533641 None:intergenic 20.0%
!!! AAAAACATCATATTCTTTTG+TGG - chr1_3:35533623-35533642 None:intergenic 20.0%
!!! AGATAGTTTAAACAGTTTTT+GGG - chr1_3:35533775-35533794 None:intergenic 20.0%
!! TAAAATATGCATCCATTATA+AGG + chr1_3:35534609-35534628 Msa0116520:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG - chr1_3:35534741-35534760 None:intergenic 20.0%
!! AAAAACTGATATTTGATATG+CGG + chr1_3:35534757-35534776 Msa0116520:intron 20.0%
!! ATGAGAATTAATAGAAACTA+TGG - chr1_3:35535420-35535439 None:intergenic 20.0%
!! AAAACAGCTATATATATAAG+TGG - chr1_3:35535689-35535708 None:intergenic 20.0%
! AAGAAAAAAATGTTGAGCTT+AGG - chr1_3:35524692-35524711 None:intergenic 25.0%
!! GAATAGATTAGTGTTTTCAT+AGG + chr1_3:35525194-35525213 Msa0116520:intron 25.0%
!!! ATTTTTGATTTGGATGAGTT+AGG + chr1_3:35525238-35525257 Msa0116520:intron 25.0%
! AAAAAATAAGCCAATCCAAA+CGG + chr1_3:35525534-35525553 Msa0116520:intron 25.0%
! TTTACCAAACAAAGCATATA+AGG - chr1_3:35525609-35525628 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG + chr1_3:35525615-35525634 Msa0116520:intron 25.0%
! GGTAAAATTGAGAGAAAAAA+TGG + chr1_3:35525760-35525779 Msa0116520:intron 25.0%
! GAGAAAAAATGGTAAGTTAT+AGG + chr1_3:35525771-35525790 Msa0116520:intron 25.0%
!! ATGACAAAAAAAGACTTGTT+TGG - chr1_3:35525877-35525896 None:intergenic 25.0%
! TTTACATATTAGATCCCTTA+AGG + chr1_3:35526637-35526656 Msa0116520:CDS 25.0%
! TAACATTAAGAACAAACTTG+TGG + chr1_3:35526832-35526851 Msa0116520:intron 25.0%
! ATAATACTACTCTGATTTAC+TGG + chr1_3:35526961-35526980 Msa0116520:intron 25.0%
! ATTTACTGGAATATAAGGAA+TGG + chr1_3:35526975-35526994 Msa0116520:intron 25.0%
! TAGAGAGATATCTATACAAT+AGG + chr1_3:35527283-35527302 Msa0116520:intron 25.0%
! GTATTGCAATTTACATACAA+TGG + chr1_3:35527763-35527782 Msa0116520:intron 25.0%
! TACAAATTTCTCAAAACCTT+AGG - chr1_3:35528092-35528111 None:intergenic 25.0%
! ATTAGTCCATGATGTTTAAT+TGG + chr1_3:35528317-35528336 Msa0116520:intron 25.0%
! TTAGTCCATGATGTTTAATT+GGG + chr1_3:35528318-35528337 Msa0116520:intron 25.0%
! AAATTCTAATTCTAGTGAGT+TGG + chr1_3:35528408-35528427 Msa0116520:intron 25.0%
!! TATCAGTATTGAAAATCACT+TGG + chr1_3:35528582-35528601 Msa0116520:intron 25.0%
! ATCTGTTTCAAAAACAATTG+AGG - chr1_3:35528656-35528675 None:intergenic 25.0%
!!! TATTGATCTCATTTTAACTG+AGG + chr1_3:35528765-35528784 Msa0116520:CDS 25.0%
! TGGAAAAACTTACTAATTAC+TGG - chr1_3:35528862-35528881 None:intergenic 25.0%
!!! AGCCACCTTTTAAAAAAATT+TGG + chr1_3:35529279-35529298 Msa0116520:intron 25.0%
! GTCATAATTAACAAAGTAAC+TGG - chr1_3:35529375-35529394 None:intergenic 25.0%
! CCTTGATTTAATAGATTTCT+GGG - chr1_3:35529456-35529475 None:intergenic 25.0%
! TCCTTGATTTAATAGATTTC+TGG - chr1_3:35529457-35529476 None:intergenic 25.0%
!! GAAAAGTTTGATAACAATTC+GGG + chr1_3:35529482-35529501 Msa0116520:CDS 25.0%
! ATATTATCATTTCATCACGA+TGG + chr1_3:35529663-35529682 Msa0116520:intron 25.0%
! ACTATAAGTCAAATTATGGA+AGG - chr1_3:35530173-35530192 None:intergenic 25.0%
!!! TCCCTCTATTTCTAATTATT+GGG + chr1_3:35530204-35530223 Msa0116520:intron 25.0%
! GTCTTGTATTCCTTTAAATA+GGG - chr1_3:35530374-35530393 None:intergenic 25.0%
!! AGTCTTGTATTCCTTTAAAT+AGG - chr1_3:35530375-35530394 None:intergenic 25.0%
! ACTCTTGATCCTAAATAAAT+AGG + chr1_3:35530392-35530411 Msa0116520:intron 25.0%
! CTCTTGATCCTAAATAAATA+GGG + chr1_3:35530393-35530412 Msa0116520:intron 25.0%
! CATGATTTCCCTATTTATTT+AGG - chr1_3:35530404-35530423 None:intergenic 25.0%
! ACATACTCAAATAAAAGAAG+GGG - chr1_3:35530577-35530596 None:intergenic 25.0%
! CACATACTCAAATAAAAGAA+GGG - chr1_3:35530578-35530597 None:intergenic 25.0%
! TTTCCAACACAATATAATGT+TGG - chr1_3:35530666-35530685 None:intergenic 25.0%
! TTTAAACTTTAATGCAAAGG+TGG + chr1_3:35530888-35530907 Msa0116520:intron 25.0%
! GCTAGTATTTGATAAAGTAA+AGG + chr1_3:35530966-35530985 Msa0116520:intron 25.0%
! CCAAATGTTTGATCAATTAA+AGG - chr1_3:35531012-35531031 None:intergenic 25.0%
! CCTTTAATTGATCAAACATT+TGG + chr1_3:35531009-35531028 Msa0116520:intron 25.0%
! TAGTTAGTAATGTCATATAG+AGG + chr1_3:35531090-35531109 Msa0116520:intron 25.0%
!! CATAACACAAATACAGTTTT+TGG - chr1_3:35531424-35531443 None:intergenic 25.0%
!! AACATAACTTGTAATTCAAC+AGG - chr1_3:35531530-35531549 None:intergenic 25.0%
!! GAATTACAAGTTATGTTTTG+TGG + chr1_3:35531533-35531552 Msa0116520:intron 25.0%
! TCATAATGAAAACAATGAAG+AGG - chr1_3:35531604-35531623 None:intergenic 25.0%
! AGGAAATTAACATAGGAATA+GGG - chr1_3:35531790-35531809 None:intergenic 25.0%
! AAGGAAATTAACATAGGAAT+AGG - chr1_3:35531791-35531810 None:intergenic 25.0%
! ATCAGATGCACTATTAAATA+AGG - chr1_3:35531810-35531829 None:intergenic 25.0%
! TATTTAATAGTGCATCTGAT+AGG + chr1_3:35531810-35531829 Msa0116520:intron 25.0%
!!! ATTAGTTTTAATTGCTGATG+TGG + chr1_3:35531930-35531949 Msa0116520:intron 25.0%
! TAATTGCATATACAAATTGC+TGG - chr1_3:35532113-35532132 None:intergenic 25.0%
! TTTGTTCATTGAATTTAGAG+GGG - chr1_3:35532337-35532356 None:intergenic 25.0%
!!! AGTCATTTTCTTTGAAGATT+CGG - chr1_3:35533214-35533233 None:intergenic 25.0%
! ATCAAAACAAGAATTCTCAA+AGG + chr1_3:35533466-35533485 Msa0116520:CDS 25.0%
! TCAAAACAAGAATTCTCAAA+GGG + chr1_3:35533467-35533486 Msa0116520:CDS 25.0%
! TAAATTTCGCCAAAAAAGAA+AGG + chr1_3:35533503-35533522 Msa0116520:CDS 25.0%
!!! GCATATTTTTGTCAGAAATA+GGG - chr1_3:35533681-35533700 None:intergenic 25.0%
!! CAGATAGTTTAAACAGTTTT+TGG - chr1_3:35533776-35533795 None:intergenic 25.0%
! TGTTTAAACTATCTGTTGTA+TGG + chr1_3:35533781-35533800 Msa0116520:intron 25.0%
! TGTTGTATGGATATACTAAT+AGG + chr1_3:35533794-35533813 Msa0116520:intron 25.0%
! AAATCTGTATTTACTGAAGT+TGG - chr1_3:35533868-35533887 None:intergenic 25.0%
! TCAGTAAATACAGATTTCTA+AGG + chr1_3:35533871-35533890 Msa0116520:intron 25.0%
! ATCCTAATTCTACTTCAAAA+GGG - chr1_3:35534331-35534350 None:intergenic 25.0%
! AAAGAATTGATACAGTATGT+TGG + chr1_3:35534369-35534388 Msa0116520:intron 25.0%
! TCAGTTTAACAAAATCTAAC+TGG - chr1_3:35534699-35534718 None:intergenic 25.0%
!! AGATTTTGTTAAACTGAGAA+TGG + chr1_3:35534702-35534721 Msa0116520:intron 25.0%
!! GATTTTGTTAAACTGAGAAT+GGG + chr1_3:35534703-35534722 Msa0116520:intron 25.0%
!!! ACTTCATTTAGTTTTGCTTT+TGG + chr1_3:35534857-35534876 Msa0116520:intron 25.0%
!!! CTTCATTTAGTTTTGCTTTT+GGG + chr1_3:35534858-35534877 Msa0116520:intron 25.0%
! GTTTGGCATTTCTATAAAAT+AGG + chr1_3:35534937-35534956 Msa0116520:intron 25.0%
! ATGTATATTATACTTCACAC+AGG + chr1_3:35534966-35534985 Msa0116520:intron 25.0%
! TGTATATTATACTTCACACA+GGG + chr1_3:35534967-35534986 Msa0116520:intron 25.0%
! AAATATTACATGAAGACTTC+TGG - chr1_3:35535269-35535288 None:intergenic 25.0%
! AGAAGTCTTCATGTAATATT+TGG + chr1_3:35535268-35535287 Msa0116520:intron 25.0%
! GAAGTCTTCATGTAATATTT+GGG + chr1_3:35535269-35535288 Msa0116520:intron 25.0%
!!! AATGCAACTATTCTGGTTTT+GGG + chr1_3:35525008-35525027 Msa0116520:five_prime_UTR 30.0%
AAGCCATAAGCTCAAATAAT+TGG - chr1_3:35525309-35525328 None:intergenic 30.0%
AACAAATTGTTACCAACAAG+GGG - chr1_3:35525560-35525579 None:intergenic 30.0%
GAACAAATTGTTACCAACAA+GGG - chr1_3:35525561-35525580 None:intergenic 30.0%
AGAACAAATTGTTACCAACA+AGG - chr1_3:35525562-35525581 None:intergenic 30.0%
! ACTACCTTATATGCTTTGTT+TGG + chr1_3:35525602-35525621 Msa0116520:intron 30.0%
! CAATTTTACCCATGTTATCT+TGG - chr1_3:35525750-35525769 None:intergenic 30.0%
AGGCTTATCAAAAAATGCTA+TGG - chr1_3:35525947-35525966 None:intergenic 30.0%
GATAAAAAATGATAAGCTGC+AGG - chr1_3:35525967-35525986 None:intergenic 30.0%
! GAACAAAGCCTTTGTAATTT+TGG + chr1_3:35526160-35526179 Msa0116520:intron 30.0%
GGTTGTGTGAGTAAAAAATA+TGG + chr1_3:35526209-35526228 Msa0116520:intron 30.0%
GATGATGAAGTGAAATGTAA+TGG + chr1_3:35526503-35526522 Msa0116520:CDS 30.0%
AATGATTCAAATGAGCAAGA+CGG - chr1_3:35526765-35526784 None:intergenic 30.0%
TCTTAAATGCATTTCTAAGC+TGG + chr1_3:35526855-35526874 Msa0116520:intron 30.0%
CTTAAATGCATTTCTAAGCT+GGG + chr1_3:35526856-35526875 Msa0116520:intron 30.0%
CTCTGATTTACTGGAATATA+AGG + chr1_3:35526970-35526989 Msa0116520:intron 30.0%
ACTTGTTTCATAAAGACAAG+TGG - chr1_3:35527120-35527139 None:intergenic 30.0%
ATCTATACAATAGGTTATGC+AGG + chr1_3:35527292-35527311 Msa0116520:intron 30.0%
! AATCTCTTGATGATCATTGA+AGG - chr1_3:35527682-35527701 None:intergenic 30.0%
TTCAATGATCATCAAGAGAT+TGG + chr1_3:35527681-35527700 Msa0116520:intron 30.0%
TTGCAGTAAATAATGTGTGT+TGG - chr1_3:35527715-35527734 None:intergenic 30.0%
ACACACATTATTTACTGCAA+TGG + chr1_3:35527715-35527734 Msa0116520:intron 30.0%
TACAATGGATCAAAATAGAG+TGG + chr1_3:35527778-35527797 Msa0116520:intron 30.0%
ACAATGGATCAAAATAGAGT+GGG + chr1_3:35527779-35527798 Msa0116520:intron 30.0%
AATGCCAAAACATCCTAATT+CGG - chr1_3:35527824-35527843 None:intergenic 30.0%
GAAATTTGTAATCCAGATGA+TGG + chr1_3:35528102-35528121 Msa0116520:intron 30.0%
CAATTAACCCTAACGATTAT+GGG - chr1_3:35528210-35528229 None:intergenic 30.0%
GTTCAGTTGAAAGAAAACAT+AGG - chr1_3:35528271-35528290 None:intergenic 30.0%
AAAGTAGCTCTTATAAGACT+TGG + chr1_3:35528362-35528381 Msa0116520:intron 30.0%
AAGTAGCTCTTATAAGACTT+GGG + chr1_3:35528363-35528382 Msa0116520:intron 30.0%
TGCACTTCTATACAAGATTA+TGG + chr1_3:35528813-35528832 Msa0116520:CDS 30.0%
GCACTTCTATACAAGATTAT+GGG + chr1_3:35528814-35528833 Msa0116520:CDS 30.0%
TGCTCAAACCAAACATATAT+AGG - chr1_3:35528889-35528908 None:intergenic 30.0%
TAAAAGAGCTACTCTTTCTA+TGG + chr1_3:35528931-35528950 Msa0116520:intron 30.0%
AGTCTTTAAGTGTTTGTCAA+AGG + chr1_3:35529005-35529024 Msa0116520:CDS 30.0%
GTCTTTAAGTGTTTGTCAAA+GGG + chr1_3:35529006-35529025 Msa0116520:CDS 30.0%
CCCAGAAATCTATTAAATCA+AGG + chr1_3:35529453-35529472 Msa0116520:CDS 30.0%
GACATGTTAAAACTTCTTGT+TGG + chr1_3:35529830-35529849 Msa0116520:intron 30.0%
CAAAAATGAAACACATCTTC+TGG - chr1_3:35529873-35529892 None:intergenic 30.0%
! CAGAAGATGTGTTTCATTTT+TGG + chr1_3:35529871-35529890 Msa0116520:intron 30.0%
ACAAAAATAAGAACACACAG+AGG - chr1_3:35529907-35529926 None:intergenic 30.0%
CCTAGATGATAATAAGTAAG+TGG - chr1_3:35530150-35530169 None:intergenic 30.0%
CCACTTACTTATTATCATCT+AGG + chr1_3:35530147-35530166 Msa0116520:intron 30.0%
!! CTCCCTCTATTTCTAATTAT+TGG + chr1_3:35530203-35530222 Msa0116520:intron 30.0%
GCCCAATAATTAGAAATAGA+GGG - chr1_3:35530208-35530227 None:intergenic 30.0%
AGCCCAATAATTAGAAATAG+AGG - chr1_3:35530209-35530228 None:intergenic 30.0%
!!! TGAAGTTTTGGGTTTTAGAT+AGG + chr1_3:35530272-35530291 Msa0116520:intron 30.0%
AACACTAACTCCCTATTTAA+AGG + chr1_3:35530361-35530380 Msa0116520:intron 30.0%
ATACTCAAATAAAAGAAGGG+GGG - chr1_3:35530575-35530594 None:intergenic 30.0%
CATACTCAAATAAAAGAAGG+GGG - chr1_3:35530576-35530595 None:intergenic 30.0%
GCACATACTCAAATAAAAGA+AGG - chr1_3:35530579-35530598 None:intergenic 30.0%
ATAATGTGTATCAGAGAAGT+AGG + chr1_3:35530603-35530622 Msa0116520:intron 30.0%
ATGCCAACATTATATTGTGT+TGG + chr1_3:35530660-35530679 Msa0116520:intron 30.0%
ACTTGTAATTGTGTAACTGT+CGG + chr1_3:35530685-35530704 Msa0116520:intron 30.0%
! GCTTTTGTGGAATTAATAAC+AGG + chr1_3:35530838-35530857 Msa0116520:intron 30.0%
AGTTTAAACTAATCCCAACA+CGG - chr1_3:35530876-35530895 None:intergenic 30.0%
TAGTTTAACAAGAAGACAGA+TGG - chr1_3:35531068-35531087 None:intergenic 30.0%
! TGAAATTGACAAGCAGTTTT+TGG - chr1_3:35531136-35531155 None:intergenic 30.0%
CTAGAGAAAAAGGAACAAAT+AGG + chr1_3:35531335-35531354 Msa0116520:CDS 30.0%
AAAAATAAAACCCACGAGTA+TGG - chr1_3:35531629-35531648 None:intergenic 30.0%
!!! ATACTCGTGGGTTTTATTTT+TGG + chr1_3:35531628-35531647 Msa0116520:intron 30.0%
!!! ATTTTTGGAACTTCATTCAC+CGG + chr1_3:35531643-35531662 Msa0116520:intron 30.0%
ATCTGATAGGATAGAATACT+GGG + chr1_3:35531823-35531842 Msa0116520:intron 30.0%
TATTACTCTGCCCAATATTT+GGG - chr1_3:35531860-35531879 None:intergenic 30.0%
AGAGTAATAGGATAGAATAC+TGG + chr1_3:35531871-35531890 Msa0116520:intron 30.0%
GAGTAATAGGATAGAATACT+GGG + chr1_3:35531872-35531891 Msa0116520:intron 30.0%
ACAAATTAATAGAGGACAGA+TGG + chr1_3:35532352-35532371 Msa0116520:CDS 30.0%
! CAGATTGATTCTCACAATTA+GGG - chr1_3:35532379-35532398 None:intergenic 30.0%
TTGTCAATATCTGAGAAGTT+GGG - chr1_3:35532500-35532519 None:intergenic 30.0%
TTCTCAGATATTGACAACAA+AGG + chr1_3:35532503-35532522 Msa0116520:CDS 30.0%
!! CAAAGGTACTAATAATGATG+AGG + chr1_3:35532520-35532539 Msa0116520:CDS 30.0%
GTAACTTCTAAGCTGTTATT+AGG - chr1_3:35532814-35532833 None:intergenic 30.0%
GATATTCAATCTCATTCTAG+TGG + chr1_3:35532853-35532872 Msa0116520:CDS 30.0%
AGACGTTTGGTACAAAAATT+TGG - chr1_3:35532995-35533014 None:intergenic 30.0%
!!! CACATGAGGTTGTTTTTTAT+GGG - chr1_3:35533027-35533046 None:intergenic 30.0%
!!! ACACATGAGGTTGTTTTTTA+TGG - chr1_3:35533028-35533047 None:intergenic 30.0%
! CTTTTCTCTCCTTTCTTTTT+TGG - chr1_3:35533515-35533534 None:intergenic 30.0%
!! GGCATATTTTTGTCAGAAAT+AGG - chr1_3:35533682-35533701 None:intergenic 30.0%
ATGGATATACTAATAGGAAC+AGG + chr1_3:35533800-35533819 Msa0116520:intron 30.0%
GACATCATACGAAAATATTG+TGG + chr1_3:35533822-35533841 Msa0116520:intron 30.0%
!! TTTGATGTTGAGTTGAACTA+GGG + chr1_3:35534253-35534272 Msa0116520:intron 30.0%
!!! TACCCTTTTGAAGTAGAATT+AGG + chr1_3:35534326-35534345 Msa0116520:intron 30.0%
CATCCTAATTCTACTTCAAA+AGG - chr1_3:35534332-35534351 None:intergenic 30.0%
AAGTAGAATTAGGATGATGT+AGG + chr1_3:35534336-35534355 Msa0116520:intron 30.0%
AACAAGAAATGGAGATAAGA+AGG - chr1_3:35534434-35534453 None:intergenic 30.0%
!! ACAGTTTTATACCTCAAAGA+TGG - chr1_3:35534541-35534560 None:intergenic 30.0%
CTTTGACATATTTCAAGACA+TGG - chr1_3:35534663-35534682 None:intergenic 30.0%
ATGTTCTTGATACCATATGA+AGG + chr1_3:35534726-35534745 Msa0116520:intron 30.0%
ACATTTATCCTCATATGGAT+AGG - chr1_3:35534904-35534923 None:intergenic 30.0%
! TCCTGTTATGATCTGTATTT+TGG + chr1_3:35535055-35535074 Msa0116520:intron 30.0%
TCCAAAATACAGATCATAAC+AGG - chr1_3:35535059-35535078 None:intergenic 30.0%
CTCAACATGATTTGAATTTC+AGG + chr1_3:35535084-35535103 Msa0116520:intron 30.0%
TGTCACAACAGAAATGTATT+CGG - chr1_3:35535348-35535367 None:intergenic 30.0%
GCTATATATATAAGTGGAGA+GGG - chr1_3:35535683-35535702 None:intergenic 30.0%
AGCTATATATATAAGTGGAG+AGG - chr1_3:35535684-35535703 None:intergenic 30.0%
CGTGGATAAGATCAAAAGAA+GGG - chr1_3:35524530-35524549 None:intergenic 35.0%
ACGTGGATAAGATCAAAAGA+AGG - chr1_3:35524531-35524550 None:intergenic 35.0%
GATTAGTGATACTTATGAGC+TGG + chr1_3:35524849-35524868 Msa0116520:five_prime_UTR 35.0%
AGAAAGCAATGCAACTATTC+TGG + chr1_3:35525001-35525020 Msa0116520:five_prime_UTR 35.0%
!!! CAATGCAACTATTCTGGTTT+TGG + chr1_3:35525007-35525026 Msa0116520:five_prime_UTR 35.0%
!! GTTTTGGGTGTTTATGTTCA+AGG + chr1_3:35525023-35525042 Msa0116520:five_prime_UTR 35.0%
ATACACACGAAGAAGAAGAT+TGG - chr1_3:35525084-35525103 None:intergenic 35.0%
GTTAGGATACTCTTGTATTC+TGG + chr1_3:35525255-35525274 Msa0116520:intron 35.0%
AGGCCAATTATTTGAGCTTA+TGG + chr1_3:35525303-35525322 Msa0116520:intron 35.0%
TCGTATGACTAAAGTAGACT+TGG + chr1_3:35525335-35525354 Msa0116520:intron 35.0%
CGTATGACTAAAGTAGACTT+GGG + chr1_3:35525336-35525355 Msa0116520:intron 35.0%
GTATGACTAAAGTAGACTTG+GGG + chr1_3:35525337-35525356 Msa0116520:intron 35.0%
AATGCAAGATTTCGAGCTTA+TGG - chr1_3:35525913-35525932 None:intergenic 35.0%
! CGAATTGATTTCGTAGTGTT+TGG - chr1_3:35526091-35526110 None:intergenic 35.0%
!!! AGCCTTTGTAATTTTGGTTG+AGG + chr1_3:35526166-35526185 Msa0116520:intron 35.0%
AGCCTCAACCAAAATTACAA+AGG - chr1_3:35526171-35526190 None:intergenic 35.0%
TAGTGTCTTGCAGTTGTATT+TGG + chr1_3:35526294-35526313 Msa0116520:intron 35.0%
AGTGTCTTGCAGTTGTATTT+GGG + chr1_3:35526295-35526314 Msa0116520:intron 35.0%
!!! TAGCATTTGCTGTTTTGCTT+TGG + chr1_3:35526337-35526356 Msa0116520:five_prime_UTR 35.0%
GTTATAATTATCGCGAGCTT+GGG + chr1_3:35526370-35526389 Msa0116520:five_prime_UTR 35.0%
! TTGGGCATTTTGAATGACAA+GGG + chr1_3:35526388-35526407 Msa0116520:exon 35.0%
AATGGTGACTGTAAAGAACT+TGG + chr1_3:35526428-35526447 Msa0116520:CDS 35.0%
GGGAAGAACAACTTAAATGA+AGG + chr1_3:35526467-35526486 Msa0116520:CDS 35.0%
AACTTAAATGAAGGAGTAGC+TGG + chr1_3:35526476-35526495 Msa0116520:CDS 35.0%
! AAATGTAATGGAGTGACTGA+TGG + chr1_3:35526515-35526534 Msa0116520:CDS 35.0%
TCAAGGGGCAATTATTTGTT+GGG + chr1_3:35526607-35526626 Msa0116520:CDS 35.0%
CTTCGCAATTGTAGTTATGA+AGG + chr1_3:35526710-35526729 Msa0116520:CDS 35.0%
TCATAAAGACAAGTGGTTCT+TGG - chr1_3:35527113-35527132 None:intergenic 35.0%
CTGACAGTTGTAAACAGTTA+GGG - chr1_3:35527331-35527350 None:intergenic 35.0%
ACTGACAGTTGTAAACAGTT+AGG - chr1_3:35527332-35527351 None:intergenic 35.0%
TGTTTACAACTGTCAGTAAC+AGG + chr1_3:35527335-35527354 Msa0116520:intron 35.0%
! AAGTGTTGTATTTGGACCTT+CGG - chr1_3:35527412-35527431 None:intergenic 35.0%
ACTGTTTGACAAGTTGTCAT+TGG - chr1_3:35527490-35527509 None:intergenic 35.0%
GTGAATCTTGAAGATAACAG+TGG + chr1_3:35527531-35527550 Msa0116520:intron 35.0%
ACGATACCATTACAAAACCT+GGG - chr1_3:35527745-35527764 None:intergenic 35.0%
TACGATACCATTACAAAACC+TGG - chr1_3:35527746-35527765 None:intergenic 35.0%
CTAATTCGGTTTCAATTGCA+TGG - chr1_3:35527810-35527829 None:intergenic 35.0%
CATGCAATTGAAACCGAATT+AGG + chr1_3:35527808-35527827 Msa0116520:intron 35.0%
! GAAACCGAATTAGGATGTTT+TGG + chr1_3:35527817-35527836 Msa0116520:intron 35.0%
!!! GAATTAGGATGTTTTGGCAT+TGG + chr1_3:35527823-35527842 Msa0116520:intron 35.0%
!! GTTTTGGCATTGGAAATCAT+AGG + chr1_3:35527833-35527852 Msa0116520:intron 35.0%
CATTTGTATACTTCGTGGTT+AGG + chr1_3:35528019-35528038 Msa0116520:intron 35.0%
! ATTTGTAATCCAGATGATGG+TGG + chr1_3:35528105-35528124 Msa0116520:intron 35.0%
! ATGGTGGAATAGTAGGAAAT+AGG + chr1_3:35528121-35528140 Msa0116520:intron 35.0%
TGGTGGAATAGTAGGAAATA+GGG + chr1_3:35528122-35528141 Msa0116520:intron 35.0%
CCAATTAACCCTAACGATTA+TGG - chr1_3:35528211-35528230 None:intergenic 35.0%
CCATAATCGTTAGGGTTAAT+TGG + chr1_3:35528208-35528227 Msa0116520:intron 35.0%
CATAGGTATGTAGTTTAAGC+CGG - chr1_3:35528254-35528273 None:intergenic 35.0%
!! AACTGAACCGTTTTGATGAT+GGG + chr1_3:35528283-35528302 Msa0116520:intron 35.0%
AGACTTGGGCAATTCTTAAT+TGG + chr1_3:35528377-35528396 Msa0116520:intron 35.0%
TCATATGTTCAGTGTTAGAC+TGG + chr1_3:35528499-35528518 Msa0116520:intron 35.0%
! TTGGTCTTTGTTTAGTGGAT+TGG + chr1_3:35528535-35528554 Msa0116520:intron 35.0%
!! AGAAAAATAGGCAGGTTGAT+GGG - chr1_3:35528625-35528644 None:intergenic 35.0%
! AAGAAAAATAGGCAGGTTGA+TGG - chr1_3:35528626-35528645 None:intergenic 35.0%
TCAGTTATTGAAGCAGCAAA+TGG + chr1_3:35528703-35528722 Msa0116520:intron 35.0%
! ATTGCAAGCTTGGAAGATTT+TGG + chr1_3:35528726-35528745 Msa0116520:CDS 35.0%
!!! TGATCTCATTTTAACTGAGG+TGG + chr1_3:35528768-35528787 Msa0116520:CDS 35.0%
TCCAAGTGCCTATATATGTT+TGG + chr1_3:35528878-35528897 Msa0116520:intron 35.0%
ACCAAACATATATAGGCACT+TGG - chr1_3:35528882-35528901 None:intergenic 35.0%
ACTCTTTCTATGGCTTCTAA+TGG + chr1_3:35528941-35528960 Msa0116520:intron 35.0%
CTCTTTCTATGGCTTCTAAT+GGG + chr1_3:35528942-35528961 Msa0116520:intron 35.0%
ATGTCATCTCATGACTCTAT+GGG + chr1_3:35528979-35528998 Msa0116520:CDS 35.0%
TTAAGCTCATTCTTGCGTAT+GGG - chr1_3:35529054-35529073 None:intergenic 35.0%
TTTAAGCTCATTCTTGCGTA+TGG - chr1_3:35529055-35529074 None:intergenic 35.0%
AGAATGAGCTTAAAAACCTG+TGG + chr1_3:35529061-35529080 Msa0116520:CDS 35.0%
!!! TGACAACGTTGATTTTGCAA+AGG - chr1_3:35529224-35529243 None:intergenic 35.0%
TGGATTGTATGAAATGACAC+AGG + chr1_3:35529346-35529365 Msa0116520:intron 35.0%
TTTCTTTCCTTCAGTCTAGT+GGG + chr1_3:35529405-35529424 Msa0116520:intron 35.0%
AGCAATGATGAGCAAGATAA+TGG + chr1_3:35529506-35529525 Msa0116520:CDS 35.0%
!! GAGCAAGATAATGGAAGTTT+AGG + chr1_3:35529515-35529534 Msa0116520:CDS 35.0%
TTGTTGGAAAATCTCATGCA+TGG + chr1_3:35529606-35529625 Msa0116520:intron 35.0%
TATCATTTCATCACGATGGT+TGG + chr1_3:35529667-35529686 Msa0116520:intron 35.0%
ATCATTTCATCACGATGGTT+GGG + chr1_3:35529668-35529687 Msa0116520:intron 35.0%
AAACTCTAGATACCACTTCA+GGG - chr1_3:35529767-35529786 None:intergenic 35.0%
AAACCTAACCTGGAAAAACT+TGG + chr1_3:35529797-35529816 Msa0116520:intron 35.0%
!!! TTGTCATTTTGGACGTCTTA+TGG + chr1_3:35529923-35529942 Msa0116520:intron 35.0%
! TCTCTAAATGGTGCTAAAAG+CGG - chr1_3:35529949-35529968 None:intergenic 35.0%
AGCACCATTTAGAGAGATTT+AGG + chr1_3:35529954-35529973 Msa0116520:intron 35.0%
GCAACCTAAATCTCTCTAAA+TGG - chr1_3:35529961-35529980 None:intergenic 35.0%
!!! TTTTTGAGACTGGAAACACA+AGG - chr1_3:35530010-35530029 None:intergenic 35.0%
TTTCCAGTCTCAAAAACCTT+TGG + chr1_3:35530014-35530033 Msa0116520:intron 35.0%
ATAATTGTACGTCGAGGAAA+AGG - chr1_3:35530069-35530088 None:intergenic 35.0%
! TATTGTGGTGGTTGAAGTTT+TGG + chr1_3:35530260-35530279 Msa0116520:intron 35.0%
! ATTGTGGTGGTTGAAGTTTT+GGG + chr1_3:35530261-35530280 Msa0116520:intron 35.0%
TGTTGGCATATTTCACTTCT+CGG - chr1_3:35530649-35530668 None:intergenic 35.0%
CTTGTAATTGTGTAACTGTC+GGG + chr1_3:35530686-35530705 Msa0116520:intron 35.0%
TTGTAATTGTGTAACTGTCG+GGG + chr1_3:35530687-35530706 Msa0116520:intron 35.0%
! TAATTCCACAAAAGCCGTTT+TGG - chr1_3:35530833-35530852 None:intergenic 35.0%
CAAACAGAAAACACTACAGA+AGG + chr1_3:35531042-35531061 Msa0116520:intron 35.0%
ATTCCAATGCTGAAATATGC+AGG + chr1_3:35531279-35531298 Msa0116520:CDS 35.0%
TTCCAATGCTGAAATATGCA+GGG + chr1_3:35531280-35531299 Msa0116520:CDS 35.0%
TGAAATATGCAGGGAAAAGA+TGG + chr1_3:35531289-35531308 Msa0116520:CDS 35.0%
!! AAAGGAGTGTCTAGAGAAAA+AGG + chr1_3:35531325-35531344 Msa0116520:CDS 35.0%
CTGTATTTGTGTTATGCTTG+TGG + chr1_3:35531428-35531447 Msa0116520:intron 35.0%
CAGTCAAAATCAAGAAAAGC+TGG - chr1_3:35531476-35531495 None:intergenic 35.0%
TACATGTTCGCTATATGTTG+AGG - chr1_3:35531505-35531524 None:intergenic 35.0%
TCATTATGATACCATACTCG+TGG + chr1_3:35531615-35531634 Msa0116520:intron 35.0%
CATTATGATACCATACTCGT+GGG + chr1_3:35531616-35531635 Msa0116520:intron 35.0%
CATCTGATAGGATAGAATAC+TGG + chr1_3:35531822-35531841 Msa0116520:intron 35.0%
ATAGGATAGAATACTGGGTT+GGG + chr1_3:35531828-35531847 Msa0116520:intron 35.0%
CTATTACTCTGCCCAATATT+TGG - chr1_3:35531861-35531880 None:intergenic 35.0%
CAAATATTGGGCAGAGTAAT+AGG + chr1_3:35531859-35531878 Msa0116520:intron 35.0%
AATAGGATAGAATACTGGGT+TGG + chr1_3:35531876-35531895 Msa0116520:intron 35.0%
ATAGGATAGAATACTGGGTT+GGG + chr1_3:35531828-35531847 Msa0116520:intron 35.0%
CTTTACTCTGCCCAATATTT+GGG - chr1_3:35531909-35531928 None:intergenic 35.0%
TCTTTACTCTGCCCAATATT+TGG - chr1_3:35531910-35531929 None:intergenic 35.0%
AACACATAATCCACAAAACG+AGG - chr1_3:35532184-35532203 None:intergenic 35.0%
!! TTTGAACCTGCAATTTTGAC+TGG - chr1_3:35532290-35532309 None:intergenic 35.0%
! CCAGATTGATTCTCACAATT+AGG - chr1_3:35532380-35532399 None:intergenic 35.0%
CCTAATTGTGAGAATCAATC+TGG + chr1_3:35532377-35532396 Msa0116520:CDS 35.0%
TTTGCATTTGAGAGTCAGAA+GGG - chr1_3:35532448-35532467 None:intergenic 35.0%
GAAGTTGGGTCTTCTATTTA+GGG - chr1_3:35532486-35532505 None:intergenic 35.0%
AGAAGTTGGGTCTTCTATTT+AGG - chr1_3:35532487-35532506 None:intergenic 35.0%
GTTGTCAATATCTGAGAAGT+TGG - chr1_3:35532501-35532520 None:intergenic 35.0%
TTTAAACTGAGCTCAAGAGA+TGG - chr1_3:35532551-35532570 None:intergenic 35.0%
TTTCTCAAGGTATGGTGATT+TGG + chr1_3:35532649-35532668 Msa0116520:intron 35.0%
!! TGGTGATTTGGTGTTATGTT+TGG + chr1_3:35532661-35532680 Msa0116520:intron 35.0%
ACTTCTAAGCTGTTATTAGG+CGG - chr1_3:35532811-35532830 None:intergenic 35.0%
TGCTAGCAACAACATTGATA+TGG + chr1_3:35532903-35532922 Msa0116520:CDS 35.0%
GCTAGCAACAACATTGATAT+GGG + chr1_3:35532904-35532923 Msa0116520:CDS 35.0%
!! GGTAAAAGCATTATTAGCAG+TGG - chr1_3:35532932-35532951 None:intergenic 35.0%
CTCTCTTATAACTGCAGATT+TGG - chr1_3:35532953-35532972 None:intergenic 35.0%
! CATTGCTGTGGTTTTCATAA+TGG - chr1_3:35533152-35533171 None:intergenic 35.0%
!! AGTATCAATAGAAGTGCTTC+AGG + chr1_3:35533303-35533322 Msa0116520:CDS 35.0%
AATGGAAGCAATGGACAAAA+TGG + chr1_3:35533333-35533352 Msa0116520:CDS 35.0%
ATGGAAGCAATGGACAAAAT+GGG + chr1_3:35533334-35533353 Msa0116520:CDS 35.0%
ACAAACATAGACAGCAACAA+TGG + chr1_3:35533384-35533403 Msa0116520:CDS 35.0%
AAAGAAAGGAGAGAAAAGAG+AGG + chr1_3:35533517-35533536 Msa0116520:CDS 35.0%
TTTCATAAGCAGGTAAACTG+AGG + chr1_3:35533543-35533562 Msa0116520:intron 35.0%
GCTACACATTTAAGGACTAA+AGG - chr1_3:35533703-35533722 None:intergenic 35.0%
! ATTTACTGAAGTTGGTCTCT+GGG - chr1_3:35533860-35533879 None:intergenic 35.0%
! TATTTACTGAAGTTGGTCTC+TGG - chr1_3:35533861-35533880 None:intergenic 35.0%
TGGGATAAATACATATGGTG+GGG - chr1_3:35534025-35534044 None:intergenic 35.0%
GTGGGATAAATACATATGGT+GGG - chr1_3:35534026-35534045 None:intergenic 35.0%
GAAGGTGGGATAAATACATA+TGG - chr1_3:35534030-35534049 None:intergenic 35.0%
TATGTATTTATCCCACCTTC+TGG + chr1_3:35534030-35534049 Msa0116520:intron 35.0%
GAAAAGAGAATACCAAGAGA+AGG - chr1_3:35534115-35534134 None:intergenic 35.0%
! CTTTTCCCTGATTGTATCAT+AGG + chr1_3:35534129-35534148 Msa0116520:intron 35.0%
AACCTCCTATGATACAATCA+GGG - chr1_3:35534137-35534156 None:intergenic 35.0%
ATGTAAGAGAGTAGAACCTA+AGG - chr1_3:35534166-35534185 None:intergenic 35.0%
AAAGCTCAAGCTCAAATACT+CGG - chr1_3:35534202-35534221 None:intergenic 35.0%
!! CTTTGATGTTGAGTTGAACT+AGG + chr1_3:35534252-35534271 Msa0116520:intron 35.0%
!! AGTTGAACTAGGGCTTTATT+TGG + chr1_3:35534263-35534282 Msa0116520:intron 35.0%
!! GTTGAACTAGGGCTTTATTT+GGG + chr1_3:35534264-35534283 Msa0116520:intron 35.0%
AGTATATACCTCACTCTACT+GGG - chr1_3:35534301-35534320 None:intergenic 35.0%
TGTTGGACTATACACTACTT+TGG + chr1_3:35534386-35534405 Msa0116520:intron 35.0%
ATGGAGATAAGAAGGAAATG+CGG - chr1_3:35534426-35534445 None:intergenic 35.0%
! TCCATTTCTTGTTTCTTTCC+CGG + chr1_3:35534441-35534460 Msa0116520:intron 35.0%
ACCTTATTCAACCATCTTTG+AGG + chr1_3:35534527-35534546 Msa0116520:intron 35.0%
ACCTCAAAGATGGTTGAATA+AGG - chr1_3:35534531-35534550 None:intergenic 35.0%
GGAATGTATAACAGAAACTG+TGG - chr1_3:35534642-35534661 None:intergenic 35.0%
GGTAGATGATGAATAAAACC+AGG + chr1_3:35534778-35534797 Msa0116520:intron 35.0%
!! AGAAATGCCAAACTTGCTAT+CGG - chr1_3:35534930-35534949 None:intergenic 35.0%
TGCATGTTTCCATCATTATG+TGG + chr1_3:35534993-35535012 Msa0116520:intron 35.0%
TGTTTCCATCATTATGTGGA+CGG + chr1_3:35534997-35535016 Msa0116520:intron 35.0%
GAATACACGAAGAAACAGAA+CGG - chr1_3:35535297-35535316 None:intergenic 35.0%
GTCACAACAGAAATGTATTC+GGG - chr1_3:35535347-35535366 None:intergenic 35.0%
ACATGTCACCTAAAAACAAG+CGG + chr1_3:35535534-35535553 Msa0116520:three_prime_UTR 35.0%
GTTCTGCAACATTATAGAGA+CGG + chr1_3:35535598-35535617 Msa0116520:three_prime_UTR 35.0%
GGATAAGATCAAAAGAAGGG+TGG - chr1_3:35524527-35524546 None:intergenic 40.0%
!! GCAATGATTTGATGATGACG+TGG - chr1_3:35524548-35524567 None:intergenic 40.0%
TCATCAAATCATTGCCAACC+TGG + chr1_3:35524553-35524572 Msa0116520:five_prime_UTR 40.0%
GAAGATAATGCGGAAGTTAG+AGG - chr1_3:35524668-35524687 None:intergenic 40.0%
GAGCTTAGGAGAAGATAATG+CGG - chr1_3:35524678-35524697 None:intergenic 40.0%
TTGAGAATAGCAGCTCTGTT+TGG + chr1_3:35525278-35525297 Msa0116520:intron 40.0%
ACAACCCAACTAAACATCCA+TGG - chr1_3:35526195-35526214 None:intergenic 40.0%
TCTTGCAGTTGTATTTGGGT+TGG + chr1_3:35526299-35526318 Msa0116520:intron 40.0%
! CTTGCAGTTGTATTTGGGTT+GGG + chr1_3:35526300-35526319 Msa0116520:intron 40.0%
!! TTGCAGTTGTATTTGGGTTG+GGG + chr1_3:35526301-35526320 Msa0116520:intron 40.0%
!!! TTGCTGTTTTGCTTTGGATG+AGG + chr1_3:35526343-35526362 Msa0116520:five_prime_UTR 40.0%
!! TGTTTTGCTTTGGATGAGGA+CGG + chr1_3:35526347-35526366 Msa0116520:five_prime_UTR 40.0%
GGTTATAATTATCGCGAGCT+TGG + chr1_3:35526369-35526388 Msa0116520:five_prime_UTR 40.0%
! CTTGGGCATTTTGAATGACA+AGG + chr1_3:35526387-35526406 Msa0116520:exon 40.0%
! TGGGCATTTTGAATGACAAG+GGG + chr1_3:35526389-35526408 Msa0116520:exon 40.0%
CTCAAGGGGCAATTATTTGT+TGG + chr1_3:35526606-35526625 Msa0116520:CDS 40.0%
ACAACTGTCAGTAACAGGAT+TGG + chr1_3:35527340-35527359 Msa0116520:intron 40.0%
TCATGCTGTAAGCCCTTTAA+GGG - chr1_3:35527386-35527405 None:intergenic 40.0%
AGTGTTGTATTTGGACCTTC+GGG - chr1_3:35527411-35527430 None:intergenic 40.0%
GGGGGATATTATGAGTATAG+GGG - chr1_3:35527445-35527464 None:intergenic 40.0%
GGGGGGATATTATGAGTATA+GGG - chr1_3:35527446-35527465 None:intergenic 40.0%
AGGGGGGATATTATGAGTAT+AGG - chr1_3:35527447-35527466 None:intergenic 40.0%
GCAAAAGTGACTCTCAATCA+AGG - chr1_3:35527643-35527662 None:intergenic 40.0%
TCAAACATGGCTTCACCAAA+GGG - chr1_3:35527869-35527888 None:intergenic 40.0%
TTTGGTGAAGCCATGTTTGA+GGG + chr1_3:35527869-35527888 Msa0116520:intron 40.0%
TACAAATGCATGGACTCTAG+TGG - chr1_3:35528007-35528026 None:intergenic 40.0%
CCACGAAGTATACAAATGCA+TGG - chr1_3:35528017-35528036 None:intergenic 40.0%
CCATGCATTTGTATACTTCG+TGG + chr1_3:35528014-35528033 Msa0116520:intron 40.0%
TCAAAGGAATGCATCTTCCT+GGG - chr1_3:35528052-35528071 None:intergenic 40.0%
AGAGTTGCCATTAACTGTGA+TGG + chr1_3:35528145-35528164 Msa0116520:intron 40.0%
GAGTTGCCATTAACTGTGAT+GGG + chr1_3:35528146-35528165 Msa0116520:intron 40.0%
ATGGGTGGTTGTAAGAAGTT+AGG + chr1_3:35528164-35528183 Msa0116520:intron 40.0%
!! TTAATTGGCTTGAGCAAGCA+AGG + chr1_3:35528223-35528242 Msa0116520:intron 40.0%
!! CAACTGAACCGTTTTGATGA+TGG + chr1_3:35528282-35528301 Msa0116520:intron 40.0%
CCTCATACCCATCATCAAAA+CGG - chr1_3:35528293-35528312 None:intergenic 40.0%
! AAGAGCTACTTTGACCTAGA+AGG - chr1_3:35528354-35528373 None:intergenic 40.0%
!!! GTGAGTTGGTATTTTGCTTG+TGG + chr1_3:35528422-35528441 Msa0116520:intron 40.0%
!! GCTTGTTGGTCTTTGTTTAG+TGG + chr1_3:35528530-35528549 Msa0116520:intron 40.0%
! CTGGAATGTTTTTCCGTGTT+GGG - chr1_3:35528843-35528862 None:intergenic 40.0%
! ACTGGAATGTTTTTCCGTGT+TGG - chr1_3:35528844-35528863 None:intergenic 40.0%
TCTATGGCTTCTAATGGGAT+TGG + chr1_3:35528947-35528966 Msa0116520:intron 40.0%
GATGTCATCTCATGACTCTA+TGG + chr1_3:35528978-35528997 Msa0116520:CDS 40.0%
CTTTCTTTCCTTCAGTCTAG+TGG + chr1_3:35529404-35529423 Msa0116520:intron 40.0%
!! AATGGTGATGGTAGTGACAA+TGG + chr1_3:35529545-35529564 Msa0116520:CDS 40.0%
CAAACTCTAGATACCACTTC+AGG - chr1_3:35529768-35529787 None:intergenic 40.0%
! CTGAAGTGGTATCTAGAGTT+TGG + chr1_3:35529766-35529785 Msa0116520:intron 40.0%
! GAACCAAGTTTTTCCAGGTT+AGG - chr1_3:35529803-35529822 None:intergenic 40.0%
! CAGTAGAACCAAGTTTTTCC+AGG - chr1_3:35529808-35529827 None:intergenic 40.0%
TAAGAACACACAGAGGAGTT+TGG - chr1_3:35529900-35529919 None:intergenic 40.0%
!!! ATGCCAAAGGTTTTTGAGAC+TGG - chr1_3:35530020-35530039 None:intergenic 40.0%
! GAAGATTTGGAGTGATGACT+GGG - chr1_3:35530094-35530113 None:intergenic 40.0%
! TGAAGATTTGGAGTGATGAC+TGG - chr1_3:35530095-35530114 None:intergenic 40.0%
!! ATGATGGAGCCAAAGTATTG+TGG + chr1_3:35530245-35530264 Msa0116520:intron 40.0%
CTTCAACCACCACAATACTT+TGG - chr1_3:35530257-35530276 None:intergenic 40.0%
TTAAGAGCCTAAGCCTAGAA+AGG + chr1_3:35530775-35530794 Msa0116520:intron 40.0%
TACAGAACTTCCACCTTTCT+AGG - chr1_3:35530791-35530810 None:intergenic 40.0%
AAAACTGCCGCATTCCAAAA+CGG + chr1_3:35530816-35530835 Msa0116520:intron 40.0%
!!! ACAAAAGCCGTTTTGGAATG+CGG - chr1_3:35530826-35530845 None:intergenic 40.0%
ATCTGCCTGACTAACAAGAA+AGG + chr1_3:35530924-35530943 Msa0116520:intron 40.0%
AACTGCCTTTCTTGTTAGTC+AGG - chr1_3:35530932-35530951 None:intergenic 40.0%
GAAGTTGACAGTCCTAAATC+AGG + chr1_3:35531200-35531219 Msa0116520:CDS 40.0%
TTCCCTGCATATTTCAGCAT+TGG - chr1_3:35531285-35531304 None:intergenic 40.0%
!! TCTAGACACTCCTTTAAGAC+TGG - chr1_3:35531320-35531339 None:intergenic 40.0%
TCCTCTAATGCATTACTTGC+CGG - chr1_3:35531665-35531684 None:intergenic 40.0%
GATAGGATAGAATACTGGGT+TGG + chr1_3:35531827-35531846 Msa0116520:intron 40.0%
CATTGCTTTCTCTAACGAAC+TGG - chr1_3:35531956-35531975 None:intergenic 40.0%
TCCTATTTCCTCCATCACTT+GGG - chr1_3:35531997-35532016 None:intergenic 40.0%
TTCCTATTTCCTCCATCACT+TGG - chr1_3:35531998-35532017 None:intergenic 40.0%
ATGTGCATACACAAGCACAT+AGG - chr1_3:35532140-35532159 None:intergenic 40.0%
GTCAACTTTCAACTCTTACG+TGG - chr1_3:35532223-35532242 None:intergenic 40.0%
ACATGTCAACAGACTTGATG+TGG + chr1_3:35532310-35532329 Msa0116520:CDS 40.0%
CATGTCAACAGACTTGATGT+GGG + chr1_3:35532311-35532330 Msa0116520:CDS 40.0%
CTTTGCATTTGAGAGTCAGA+AGG - chr1_3:35532449-35532468 None:intergenic 40.0%
TCTGACTCTCAAATGCAAAG+CGG + chr1_3:35532449-35532468 Msa0116520:CDS 40.0%
CTCTTGAGCTCAGTTTAAAG+AGG + chr1_3:35532552-35532571 Msa0116520:CDS 40.0%
! CCAGCTTCTTCAACTTTTCT+AGG - chr1_3:35532578-35532597 None:intergenic 40.0%
CCTAGAAAAGTTGAAGAAGC+TGG + chr1_3:35532575-35532594 Msa0116520:CDS 40.0%
! AGACTTCTTAGCATTGAAGG+TGG - chr1_3:35532761-35532780 None:intergenic 40.0%
! TCATTTGAGTTCTGGTTAGG+AGG - chr1_3:35532883-35532902 None:intergenic 40.0%
! GCATCATTTGAGTTCTGGTT+AGG - chr1_3:35532886-35532905 None:intergenic 40.0%
! TGCTAGCATCATTTGAGTTC+TGG - chr1_3:35532891-35532910 None:intergenic 40.0%
!!! TGAGGTTGTTTTTTATGGGC+TGG - chr1_3:35533023-35533042 None:intergenic 40.0%
!! ATGTGAGACAACTTGTTGAG+AGG - chr1_3:35533052-35533071 None:intergenic 40.0%
AGATACGACAACAACAATCC+TGG + chr1_3:35533080-35533099 Msa0116520:CDS 40.0%
GCACCACCTAAAATTGACAA+GGG + chr1_3:35533102-35533121 Msa0116520:CDS 40.0%
! GAACCCTTGTCAATTTTAGG+TGG - chr1_3:35533108-35533127 None:intergenic 40.0%
! GCAGAACCCTTGTCAATTTT+AGG - chr1_3:35533111-35533130 None:intergenic 40.0%
AGTGCCAGTTGAAGGTAATA+CGG + chr1_3:35533272-35533291 Msa0116520:CDS 40.0%
TTTCCCGTATTACCTTCAAC+TGG - chr1_3:35533279-35533298 None:intergenic 40.0%
ATTAGAATCCTGCTATGCAC+TGG + chr1_3:35533937-35533956 Msa0116520:intron 40.0%
TTAGAATCCTGCTATGCACT+GGG + chr1_3:35533938-35533957 Msa0116520:intron 40.0%
GTGGGGAATACAAAAGAGTA+GGG - chr1_3:35534008-35534027 None:intergenic 40.0%
GGTGGGATAAATACATATGG+TGG - chr1_3:35534027-35534046 None:intergenic 40.0%
ATTGCAGTATTACCACCAGA+AGG - chr1_3:35534048-35534067 None:intergenic 40.0%
TTCCCTGATTGTATCATAGG+AGG + chr1_3:35534132-35534151 Msa0116520:intron 40.0%
CAACCTCCTATGATACAATC+AGG - chr1_3:35534138-35534157 None:intergenic 40.0%
CTGATTGTATCATAGGAGGT+TGG + chr1_3:35534136-35534155 Msa0116520:intron 40.0%
AAGCTCAAGCTCAAATACTC+GGG - chr1_3:35534201-35534220 None:intergenic 40.0%
!! GCTTGAGCTTTTAGAAGAGT+TGG + chr1_3:35534211-35534230 Msa0116520:intron 40.0%
CAGTATATACCTCACTCTAC+TGG - chr1_3:35534302-35534321 None:intergenic 40.0%
TGGAGATAAGAAGGAAATGC+GGG - chr1_3:35534425-35534444 None:intergenic 40.0%
TCCGGGAAAGAAACAAGAAA+TGG - chr1_3:35534445-35534464 None:intergenic 40.0%
GAGATTATCACTAACTGCAG+TGG + chr1_3:35534566-35534585 Msa0116520:intron 40.0%
TGTGGCAGGAATCCTTATAA+TGG - chr1_3:35534624-35534643 None:intergenic 40.0%
TGTATAACAGAAACTGTGGC+AGG - chr1_3:35534638-35534657 None:intergenic 40.0%
GATGAATAAAACCAGGACTG+AGG + chr1_3:35534785-35534804 Msa0116520:intron 40.0%
!! TTTTGGGTCACCAAAAGTTG+AGG + chr1_3:35534874-35534893 Msa0116520:intron 40.0%
! GATAGGTGAACCTCAACTTT+TGG - chr1_3:35534887-35534906 None:intergenic 40.0%
CAGACTACTGCTCTACAAAT+TGG + chr1_3:35535022-35535041 Msa0116520:intron 40.0%
! TCACAGAGCATTTGACACAA+TGG + chr1_3:35535215-35535234 Msa0116520:three_prime_UTR 40.0%
CATTTGACACAATGGCGTTT+GGG + chr1_3:35535223-35535242 Msa0116520:three_prime_UTR 40.0%
TGTGTAGTTCATCAACCAAC+TGG + chr1_3:35535476-35535495 Msa0116520:intron 40.0%
GCACACAAAAAGTAACCAGT+TGG - chr1_3:35535494-35535513 None:intergenic 40.0%
!!! ACTGGTTACTTTTTGTGTGC+AGG + chr1_3:35535494-35535513 Msa0116520:intron 40.0%
!!! CTGGTTACTTTTTGTGTGCA+GGG + chr1_3:35535495-35535514 Msa0116520:intron 40.0%
!! CTTGAACACCGCTTGTTTTT+AGG - chr1_3:35535545-35535564 None:intergenic 40.0%
TAATGTTGCAGAACCTGAAC+CGG - chr1_3:35535592-35535611 None:intergenic 40.0%
CAACATTATAGAGACGGCTT+AGG + chr1_3:35535604-35535623 Msa0116520:three_prime_UTR 40.0%
! AGGATCACATTTTCCTAACC+TGG + chr1_3:35535624-35535643 Msa0116520:three_prime_UTR 40.0%
! GGATCACATTTTCCTAACCT+GGG + chr1_3:35535625-35535644 Msa0116520:three_prime_UTR 40.0%
TTCATTGCAATGTCCACCTG+TGG + chr1_3:35524501-35524520 Msa0116520:five_prime_UTR 45.0%
GGAGAGAGATATTTCCAGGT+TGG - chr1_3:35524570-35524589 None:intergenic 45.0%
ACGTGGAGAGAGATATTTCC+AGG - chr1_3:35524574-35524593 None:intergenic 45.0%
TGGAAATATCTCTCTCCACG+TGG + chr1_3:35524573-35524592 Msa0116520:five_prime_UTR 45.0%
AATGTTCCAAATGTGCCACG+TGG - chr1_3:35524591-35524610 None:intergenic 45.0%
!! AGATTGAGTTGGTGAGGGAT+TGG - chr1_3:35524639-35524658 None:intergenic 45.0%
!! GAGAGAGATTGAGTTGGTGA+GGG - chr1_3:35524644-35524663 None:intergenic 45.0%
!! AGAGAGAGATTGAGTTGGTG+AGG - chr1_3:35524645-35524664 None:intergenic 45.0%
AGAGGAGAGAGAGATTGAGT+TGG - chr1_3:35524650-35524669 None:intergenic 45.0%
AATAGCAGCTCTGTTTGGCA+AGG + chr1_3:35525283-35525302 Msa0116520:intron 45.0%
AGACTTGGGGCTGTTTAGAT+TGG + chr1_3:35525350-35525369 Msa0116520:intron 45.0%
!!! AATTTTGGTTGAGGCTGCCA+TGG + chr1_3:35526175-35526194 Msa0116520:intron 45.0%
GCTGCCATGGATGTTTAGTT+GGG + chr1_3:35526188-35526207 Msa0116520:intron 45.0%
!! GTTTTGCTTTGGATGAGGAC+GGG + chr1_3:35526348-35526367 Msa0116520:five_prime_UTR 45.0%
GGTATCCAGATGAGTGTCAA+TGG + chr1_3:35526410-35526429 Msa0116520:CDS 45.0%
AGTCACCATTGACACTCATC+TGG - chr1_3:35526418-35526437 None:intergenic 45.0%
AAGAACTTGGTCAGCGTTTG+CGG + chr1_3:35526441-35526460 Msa0116520:CDS 45.0%
AAATGAAGGAGTAGCTGGAG+AGG + chr1_3:35526481-35526500 Msa0116520:CDS 45.0%
TGGAGTGACTGATGGAGTTA+AGG + chr1_3:35526523-35526542 Msa0116520:CDS 45.0%
GTGACTGATGGAGTTAAGGT+TGG + chr1_3:35526527-35526546 Msa0116520:CDS 45.0%
!! TGATGGAGTTAAGGTTGGTG+AGG + chr1_3:35526532-35526551 Msa0116520:CDS 45.0%
!! GATGGAGTTAAGGTTGGTGA+GGG + chr1_3:35526533-35526552 Msa0116520:CDS 45.0%
! TACTTGCTGCTGAACAGAAG+AGG - chr1_3:35526573-35526592 None:intergenic 45.0%
! GGGCAATTATTTGTTGGGAG+AGG + chr1_3:35526612-35526631 Msa0116520:CDS 45.0%
ATCCCTTAAGGTCTTGCTTG+TGG + chr1_3:35526649-35526668 Msa0116520:CDS 45.0%
CTCCACAAGCAAGACCTTAA+GGG - chr1_3:35526654-35526673 None:intergenic 45.0%
ACTCCACAAGCAAGACCTTA+AGG - chr1_3:35526655-35526674 None:intergenic 45.0%
GAAGCAACGCAGTGACAATA+TGG - chr1_3:35526694-35526713 None:intergenic 45.0%
AGAAGTAGAGCCACCCTTAA+AGG + chr1_3:35527370-35527389 Msa0116520:intron 45.0%
GAAGTAGAGCCACCCTTAAA+GGG + chr1_3:35527371-35527390 Msa0116520:intron 45.0%
CTCATGCTGTAAGCCCTTTA+AGG - chr1_3:35527387-35527406 None:intergenic 45.0%
CTTAAAGGGCTTACAGCATG+AGG + chr1_3:35527385-35527404 Msa0116520:intron 45.0%
ATAATATCCCCCCTTTGAGC+TGG + chr1_3:35527453-35527472 Msa0116520:intron 45.0%
TGTTAGCAACATTCGTGCTC+AGG - chr1_3:35527583-35527602 None:intergenic 45.0%
GAGCACGAATGTTGCTAACA+AGG + chr1_3:35527583-35527602 Msa0116520:intron 45.0%
TTTACTGCAATGGAGATCCC+AGG + chr1_3:35527725-35527744 Msa0116520:intron 45.0%
!! GGAGATCCCAGGTTTTGTAA+TGG + chr1_3:35527736-35527755 Msa0116520:intron 45.0%
CTCAAACATGGCTTCACCAA+AGG - chr1_3:35527870-35527889 None:intergenic 45.0%
CTTTGGTGAAGCCATGTTTG+AGG + chr1_3:35527868-35527887 Msa0116520:intron 45.0%
ATGAACCAATCCCTAGTCAC+TGG - chr1_3:35527931-35527950 None:intergenic 45.0%
!! AGTGACTAGGGATTGGTTCA+TGG + chr1_3:35527930-35527949 Msa0116520:intron 45.0%
CTCAAAGGAATGCATCTTCC+TGG - chr1_3:35528053-35528072 None:intergenic 45.0%
GGAAGATGCATTCCTTTGAG+TGG + chr1_3:35528053-35528072 Msa0116520:intron 45.0%
CCTACTATTCCACCATCATC+TGG - chr1_3:35528117-35528136 None:intergenic 45.0%
!! CCAGATGATGGTGGAATAGT+AGG + chr1_3:35528114-35528133 Msa0116520:intron 45.0%
! TTGCCATTAACTGTGATGGG+TGG + chr1_3:35528149-35528168 Msa0116520:intron 45.0%
CAACCACCCATCACAGTTAA+TGG - chr1_3:35528155-35528174 None:intergenic 45.0%
GGTGGTTGTAAGAAGTTAGG+TGG + chr1_3:35528167-35528186 Msa0116520:intron 45.0%
GAAGTTAGGTGGCCATAAGA+AGG + chr1_3:35528178-35528197 Msa0116520:intron 45.0%
TATGGGACCATGCCTTCTTA+TGG - chr1_3:35528193-35528212 None:intergenic 45.0%
GCATGGTCCCATAATCGTTA+GGG + chr1_3:35528200-35528219 Msa0116520:intron 45.0%
!!! CCGTTTTGATGATGGGTATG+AGG + chr1_3:35528290-35528309 Msa0116520:intron 45.0%
GCGTGCCCAATTAAACATCA+TGG - chr1_3:35528326-35528345 None:intergenic 45.0%
!! AAAATAGGCAGGTTGATGGG+AGG - chr1_3:35528622-35528641 None:intergenic 45.0%
!! CAGCAAATGGATTGCAAGCT+TGG + chr1_3:35528716-35528735 Msa0116520:CDS 45.0%
! GCAAGCTTGGAAGATTTTGG+AGG + chr1_3:35528729-35528748 Msa0116520:CDS 45.0%
AGTGCAATGCCTGATAAACC+AGG - chr1_3:35528799-35528818 None:intergenic 45.0%
! GAATGTTTTTCCGTGTTGGG+TGG - chr1_3:35528840-35528859 None:intergenic 45.0%
AAAACCTGTGGCAGCATGTT+TGG + chr1_3:35529073-35529092 Msa0116520:CDS 45.0%
GGAAGTTTAGGCCTGAACAA+TGG + chr1_3:35529527-35529546 Msa0116520:CDS 45.0%
TTAGGCCTGAACAATGGTGA+TGG + chr1_3:35529533-35529552 Msa0116520:CDS 45.0%
CACTACCATCACCATTGTTC+AGG - chr1_3:35529541-35529560 None:intergenic 45.0%
! GATGGTAGTGACAATGGTAG+TGG + chr1_3:35529551-35529570 Msa0116520:CDS 45.0%
! TGTTTTCCTCTTCCCTGAAG+TGG + chr1_3:35529752-35529771 Msa0116520:intron 45.0%
TAGATACCACTTCAGGGAAG+AGG - chr1_3:35529761-35529780 None:intergenic 45.0%
CTTCAGCATAGCTCAACCTT+GGG + chr1_3:35529984-35530003 Msa0116520:intron 45.0%
TTTGGCATGTCCTCATTCGT+GGG + chr1_3:35530032-35530051 Msa0116520:intron 45.0%
TGGGTGATAATTGTACGTCG+AGG - chr1_3:35530075-35530094 None:intergenic 45.0%
ATCCCCCTCACTTTGTATGA+TGG + chr1_3:35530229-35530248 Msa0116520:intron 45.0%
CTCCATCATACAAAGTGAGG+GGG - chr1_3:35530234-35530253 None:intergenic 45.0%
GCTCCATCATACAAAGTGAG+GGG - chr1_3:35530235-35530254 None:intergenic 45.0%
GGCTCCATCATACAAAGTGA+GGG - chr1_3:35530236-35530255 None:intergenic 45.0%
TGGCTCCATCATACAAAGTG+AGG - chr1_3:35530237-35530256 None:intergenic 45.0%
!! ATGGAGCCAAAGTATTGTGG+TGG + chr1_3:35530248-35530267 Msa0116520:intron 45.0%
ACTTCCACCTTTCTAGGCTT+AGG - chr1_3:35530785-35530804 None:intergenic 45.0%
! GCATTCCAAAACGGCTTTTG+TGG + chr1_3:35530825-35530844 Msa0116520:intron 45.0%
GTGTAGAAGAATGCCGTGTT+GGG + chr1_3:35530860-35530879 Msa0116520:intron 45.0%
GTCAACTTCTACAGCTCGTT+TGG - chr1_3:35531189-35531208 None:intergenic 45.0%
TCCTAAATCAGGCTCTCAGT+GGG + chr1_3:35531211-35531230 Msa0116520:CDS 45.0%
! AACTTGAGCACAAGTGCTGT+CGG - chr1_3:35531255-35531274 None:intergenic 45.0%
GATGGTTCCTCCAGTCTTAA+AGG + chr1_3:35531307-35531326 Msa0116520:CDS 45.0%
!! AGACACTCCTTTAAGACTGG+AGG - chr1_3:35531317-35531336 None:intergenic 45.0%
GAAAGAGTTTATGCAGCGAC+AGG - chr1_3:35531387-35531406 None:intergenic 45.0%
ACCGGCAAGTAATGCATTAG+AGG + chr1_3:35531661-35531680 Msa0116520:intron 45.0%
TTGGGCCTTAGCCCAAATAT+TGG + chr1_3:35531846-35531865 Msa0116520:intron 45.0%
TGGGCCTTAGCCCAAATATT+GGG + chr1_3:35531847-35531866 Msa0116520:intron 45.0%
TCTGCCCAATATTTGGGCTA+AGG - chr1_3:35531854-35531873 None:intergenic 45.0%
TTGGGCCTTAGCCCAAATAT+TGG + chr1_3:35531846-35531865 Msa0116520:intron 45.0%
TGGGCCTTAGCCCAAATATT+GGG + chr1_3:35531847-35531866 Msa0116520:intron 45.0%
TCTGCCCAATATTTGGGCTA+AGG - chr1_3:35531854-35531873 None:intergenic 45.0%
GTCCTGCAATTCAGGATGAA+CGG + chr1_3:35532597-35532616 Msa0116520:CDS 45.0%
TTCCGTTCATCCTGAATTGC+AGG - chr1_3:35532602-35532621 None:intergenic 45.0%
CTGATCAGTCTGCTTTCTCA+AGG + chr1_3:35532636-35532655 Msa0116520:CDS 45.0%
CAGTCTGCTTTCTCAAGGTA+TGG + chr1_3:35532641-35532660 Msa0116520:intron 45.0%
! GGGAGACTTCTTAGCATTGA+AGG - chr1_3:35532764-35532783 None:intergenic 45.0%
AATGCTAAGAAGTCTCCCAC+CGG + chr1_3:35532766-35532785 Msa0116520:CDS 45.0%
AGTTATAAGAGAGCCAGCAG+AGG + chr1_3:35532960-35532979 Msa0116520:CDS 45.0%
! CTTGTTGAGAGGTACACATG+AGG - chr1_3:35533041-35533060 None:intergenic 45.0%
!! TGTCAATTTTAGGTGGTGCC+AGG - chr1_3:35533101-35533120 None:intergenic 45.0%
GGCACCACCTAAAATTGACA+AGG + chr1_3:35533101-35533120 Msa0116520:CDS 45.0%
GCATGTTAGCAACATTGCTG+TGG - chr1_3:35533164-35533183 None:intergenic 45.0%
! ACATTTGATGACCCACAGTG+TGG - chr1_3:35533246-35533265 None:intergenic 45.0%
ACACTGTGGGTCATCAAATG+TGG + chr1_3:35533245-35533264 Msa0116520:CDS 45.0%
GTGCCAGTTGAAGGTAATAC+GGG + chr1_3:35533273-35533292 Msa0116520:CDS 45.0%
AGTGCTTCAGGAAGCAACAA+TGG + chr1_3:35533315-35533334 Msa0116520:CDS 45.0%
GGAAGCAACAATGGAAGCAA+TGG + chr1_3:35533324-35533343 Msa0116520:CDS 45.0%
! ACAGCAACAATGGACTTGCT+GGG + chr1_3:35533394-35533413 Msa0116520:CDS 45.0%
!! AATGGACTTGCTGGGAATAG+TGG + chr1_3:35533402-35533421 Msa0116520:CDS 45.0%
! AGTGGTGATGCTAGTGGAAA+TGG + chr1_3:35533426-35533445 Msa0116520:CDS 45.0%
GATGCTAGTGGAAATGGAAG+TGG + chr1_3:35533432-35533451 Msa0116520:CDS 45.0%
!! AGAGAGGTGCTTTCATAAGC+AGG + chr1_3:35533533-35533552 Msa0116520:CDS 45.0%
!!! TTGGGGTTTTTTTTGGGGGA+GGG - chr1_3:35533728-35533747 None:intergenic 45.0%
!!! TGGGGGTTGGGGTTTTTTTT+GGG - chr1_3:35533734-35533753 None:intergenic 45.0%
AGAGTAGGGAAAGAATCGAG+AGG - chr1_3:35533994-35534013 None:intergenic 45.0%
GGTGGGGAATACAAAAGAGT+AGG - chr1_3:35534009-35534028 None:intergenic 45.0%
GTATTTATCCCACCTTCTGG+TGG + chr1_3:35534033-35534052 Msa0116520:intron 45.0%
CAGTATTACCACCAGAAGGT+GGG - chr1_3:35534044-35534063 None:intergenic 45.0%
ATAGGAGGTTGGATCTCCTT+AGG + chr1_3:35534147-35534166 Msa0116520:intron 45.0%
AAGGAAATGCGGGAGAAACA+AGG - chr1_3:35534415-35534434 None:intergenic 45.0%
GAGGTTCACCTATCCATATG+AGG + chr1_3:35534893-35534912 Msa0116520:intron 45.0%
GGCGGACATTTATCCTCATA+TGG - chr1_3:35534909-35534928 None:intergenic 45.0%
!! AATGCCAAACTTGCTATCGG+CGG - chr1_3:35534927-35534946 None:intergenic 45.0%
! TTCAGGTTCGATATCAGAGC+AGG + chr1_3:35535101-35535120 Msa0116520:intron 45.0%
AACAACGACCACGATATCGA+GGG + chr1_3:35535137-35535156 Msa0116520:CDS 45.0%
ACAAATTGCCCTCGATATCG+TGG - chr1_3:35535148-35535167 None:intergenic 45.0%
CTCACTTGCATTACCATTCG+AGG - chr1_3:35535179-35535198 None:intergenic 45.0%
! CTCGAATGGTAATGCAAGTG+AGG + chr1_3:35535177-35535196 Msa0116520:CDS 45.0%
GCATTTGACACAATGGCGTT+TGG + chr1_3:35535222-35535241 Msa0116520:three_prime_UTR 45.0%
! ACAATGGCGTTTGGGATAAC+CGG + chr1_3:35535231-35535250 Msa0116520:three_prime_UTR 45.0%
AATGTTGCAGAACCTGAACC+GGG - chr1_3:35535591-35535610 None:intergenic 45.0%
TTCCTAACCTGGGATGAGTT+TGG + chr1_3:35535635-35535654 Msa0116520:three_prime_UTR 45.0%
TCCTAACCTGGGATGAGTTT+GGG + chr1_3:35535636-35535655 Msa0116520:three_prime_UTR 45.0%
ATCAAAAGAAGGGTGGCCAC+AGG - chr1_3:35524520-35524539 None:intergenic 50.0%
!! GATTGGTGACGTGGATGAAG+TGG - chr1_3:35524622-35524641 None:intergenic 50.0%
GGCTGCCATGGATGTTTAGT+TGG + chr1_3:35526187-35526206 Msa0116520:intron 50.0%
AGAACTTGGTCAGCGTTTGC+GGG + chr1_3:35526442-35526461 Msa0116520:CDS 50.0%
!! GAGTTAAGGTTGGTGAGGGA+GGG + chr1_3:35526537-35526556 Msa0116520:CDS 50.0%
TACCGCAGCAACAGTCTCAA+GGG + chr1_3:35526591-35526610 Msa0116520:CDS 50.0%
CAACGCAGTGACAATATGGC+GGG - chr1_3:35526690-35526709 None:intergenic 50.0%
GCAACGCAGTGACAATATGG+CGG - chr1_3:35526691-35526710 None:intergenic 50.0%
! TGCTGTAAGCCCTTTAAGGG+TGG - chr1_3:35527383-35527402 None:intergenic 50.0%
ATAGGTGCAGAGATGCCCTT+TGG + chr1_3:35527851-35527870 Msa0116520:intron 50.0%
!!! GAAGTGGTTTTGACCGGAGA+GGG + chr1_3:35527896-35527915 Msa0116520:intron 50.0%
!!! AAGTGGTTTTGACCGGAGAG+GGG + chr1_3:35527897-35527916 Msa0116520:intron 50.0%
GGTCAGCATTCCAGTGACTA+GGG + chr1_3:35527918-35527937 Msa0116520:intron 50.0%
GCATTCCAGTGACTAGGGAT+TGG + chr1_3:35527923-35527942 Msa0116520:intron 50.0%
!! CTAGGGATTGGTTCATGGCA+AGG + chr1_3:35527935-35527954 Msa0116520:intron 50.0%
TGTGCGTGCTTTCCACTCAA+AGG - chr1_3:35528068-35528087 None:intergenic 50.0%
! TGGAAAGCACGCACAACCTA+AGG + chr1_3:35528073-35528092 Msa0116520:intron 50.0%
TAGGTGGCCATAAGAAGGCA+TGG + chr1_3:35528183-35528202 Msa0116520:intron 50.0%
GGCATGGTCCCATAATCGTT+AGG + chr1_3:35528199-35528218 Msa0116520:intron 50.0%
TGGCTTGAGCAAGCAAGGTA+AGG + chr1_3:35528228-35528247 Msa0116520:intron 50.0%
TTGAGCAAGCAAGGTAAGGC+CGG + chr1_3:35528232-35528251 Msa0116520:intron 50.0%
!! GACTGGCGTACTTAGCTTGT+TGG + chr1_3:35528516-35528535 Msa0116520:intron 50.0%
TTAACTGAGGTGGCAATGCC+TGG + chr1_3:35528778-35528797 Msa0116520:CDS 50.0%
GTGGCAATGCCTGGTTTATC+AGG + chr1_3:35528787-35528806 Msa0116520:CDS 50.0%
AGATTATGGGCCACCCAACA+CGG + chr1_3:35528827-35528846 Msa0116520:CDS 50.0%
TTCCTTCAGTCTAGTGGGAG+TGG + chr1_3:35529410-35529429 Msa0116520:intron 50.0%
!! TGACAATGGTAGTGGCACTC+AGG + chr1_3:35529559-35529578 Msa0116520:CDS 50.0%
GGCAAACGACAAACCTAACC+TGG + chr1_3:35529787-35529806 Msa0116520:intron 50.0%
AGGTTGAGCTATGCTGAAGG+AGG - chr1_3:35529983-35530002 None:intergenic 50.0%
CCAAGGTTGAGCTATGCTGA+AGG - chr1_3:35529986-35530005 None:intergenic 50.0%
CCTTCAGCATAGCTCAACCT+TGG + chr1_3:35529983-35530002 Msa0116520:intron 50.0%
CACGAATGAGGACATGCCAA+AGG - chr1_3:35530033-35530052 None:intergenic 50.0%
CTTTGGCATGTCCTCATTCG+TGG + chr1_3:35530031-35530050 Msa0116520:intron 50.0%
TAAGGAACCACCCACGAATG+AGG - chr1_3:35530045-35530064 None:intergenic 50.0%
GTACGTCGAGGAAAAGGCTA+AGG - chr1_3:35530063-35530082 None:intergenic 50.0%
CAAGGCAGGGACTGAAGATT+TGG - chr1_3:35530107-35530126 None:intergenic 50.0%
TTCAGTCCCTGCCTTGAACT+AGG + chr1_3:35530111-35530130 Msa0116520:intron 50.0%
GCAAAGCCTAGTTCAAGGCA+GGG - chr1_3:35530120-35530139 None:intergenic 50.0%
CTGCCTTGAACTAGGCTTTG+CGG + chr1_3:35530119-35530138 Msa0116520:intron 50.0%
ACACCGCAAAGCCTAGTTCA+AGG - chr1_3:35530125-35530144 None:intergenic 50.0%
AGAGCCTAAGCCTAGAAAGG+TGG + chr1_3:35530778-35530797 Msa0116520:intron 50.0%
GGTGTAGAAGAATGCCGTGT+TGG + chr1_3:35530859-35530878 Msa0116520:intron 50.0%
GTCAGGCAGATGCATCTACA+TGG - chr1_3:35530915-35530934 None:intergenic 50.0%
! TTCTCCTTTTGCAGAGCTCC+TGG + chr1_3:35531162-35531181 Msa0116520:intron 50.0%
TTCTACAGCTCGTTTGGTCC+AGG - chr1_3:35531183-35531202 None:intergenic 50.0%
GTCCTAAATCAGGCTCTCAG+TGG + chr1_3:35531210-35531229 Msa0116520:CDS 50.0%
TCCCACTGAGAGCCTGATTT+AGG - chr1_3:35531215-35531234 None:intergenic 50.0%
! ACTTGAGCACAAGTGCTGTC+GGG - chr1_3:35531254-35531273 None:intergenic 50.0%
CAGCGACAGGAGGAAAATCA+AGG - chr1_3:35531374-35531393 None:intergenic 50.0%
AGAGTTTATGCAGCGACAGG+AGG - chr1_3:35531384-35531403 None:intergenic 50.0%
TTTCCTCCATCACTTGGGCA+GGG - chr1_3:35531992-35532011 None:intergenic 50.0%
ATTTCCTCCATCACTTGGGC+AGG - chr1_3:35531993-35532012 None:intergenic 50.0%
! GCCCAAGTGATGGAGGAAAT+AGG + chr1_3:35531993-35532012 Msa0116520:intron 50.0%
! CATGCACGTACCTCGTTTTG+TGG + chr1_3:35532171-35532190 Msa0116520:intron 50.0%
GCGGTTCCAGTCAAAATTGC+AGG + chr1_3:35532281-35532300 Msa0116520:intron 50.0%
AGAAGCTGGTCCTGCAATTC+AGG + chr1_3:35532589-35532608 Msa0116520:CDS 50.0%
AGAGTTGCTTCCGACACATC+CGG - chr1_3:35532788-35532807 None:intergenic 50.0%
TTGGTTGTTGATGCCTCTGC+TGG - chr1_3:35532976-35532995 None:intergenic 50.0%
TGACAAGGGTTCTGCTACTC+AGG + chr1_3:35533116-35533135 Msa0116520:CDS 50.0%
GAAGATTCGGCATCATGCTC+AGG - chr1_3:35533201-35533220 None:intergenic 50.0%
ACTGTTGTTGCTCCACACTG+TGG + chr1_3:35533231-35533250 Msa0116520:CDS 50.0%
CTGTTGTTGCTCCACACTGT+GGG + chr1_3:35533232-35533251 Msa0116520:CDS 50.0%
! GTGGTCAAAGTGCCAGTTGA+AGG + chr1_3:35533264-35533283 Msa0116520:CDS 50.0%
AGCAGCGCTGCAATTAATGC+TGG + chr1_3:35533357-35533376 Msa0116520:CDS 50.0%
AGCGCTGCAATTAATGCTGG+AGG + chr1_3:35533360-35533379 Msa0116520:CDS 50.0%
GCGCTGCAATTAATGCTGGA+GGG + chr1_3:35533361-35533380 Msa0116520:CDS 50.0%
! GACAGCAACAATGGACTTGC+TGG + chr1_3:35533393-35533412 Msa0116520:CDS 50.0%
!!! TGGGGTTTTTTTTGGGGGAG+GGG - chr1_3:35533727-35533746 None:intergenic 50.0%
!!! GTTGGGGTTTTTTTTGGGGG+AGG - chr1_3:35533729-35533748 None:intergenic 50.0%
!!! GGGGTTGGGGTTTTTTTTGG+GGG - chr1_3:35533732-35533751 None:intergenic 50.0%
!!! GGGGGTTGGGGTTTTTTTTG+GGG - chr1_3:35533733-35533752 None:intergenic 50.0%
!!! GTGGGGGTTGGGGTTTTTTT+TGG - chr1_3:35533735-35533754 None:intergenic 50.0%
TTGGGTCCATGATGCTCATG+CGG - chr1_3:35533757-35533776 None:intergenic 50.0%
! TACTGAAGTTGGTCTCTGGG+TGG - chr1_3:35533857-35533876 None:intergenic 50.0%
CTGCTATGCACTGGGAATCA+CGG + chr1_3:35533946-35533965 Msa0116520:intron 50.0%
GCAGTATTACCACCAGAAGG+TGG - chr1_3:35534045-35534064 None:intergenic 50.0%
!! GAAAACTGGCTTGATGGGCA+TGG - chr1_3:35534081-35534100 None:intergenic 50.0%
!! GCCAGGAAAACTGGCTTGAT+GGG - chr1_3:35534086-35534105 None:intergenic 50.0%
!! AGCCAGGAAAACTGGCTTGA+TGG - chr1_3:35534087-35534106 None:intergenic 50.0%
AGGTTCACAGCCAGGAAAAC+TGG - chr1_3:35534095-35534114 None:intergenic 50.0%
GATGATCTCAACCTCAGTCC+TGG - chr1_3:35534799-35534818 None:intergenic 50.0%
ATGTCCGCCGATAGCAAGTT+TGG + chr1_3:35534920-35534939 Msa0116520:intron 50.0%
CTGCACCGTCCACATAATGA+TGG - chr1_3:35535005-35535024 None:intergenic 50.0%
GAACAACGACCACGATATCG+AGG + chr1_3:35535136-35535155 Msa0116520:CDS 50.0%
TTTGTGCGACAGTCCTCGAA+TGG + chr1_3:35535163-35535182 Msa0116520:CDS 50.0%
TGTTCAAGACCTACCCGTTG+CGG + chr1_3:35535557-35535576 Msa0116520:three_prime_UTR 50.0%
CCTAACCTGGGATGAGTTTG+GGG + chr1_3:35535637-35535656 Msa0116520:three_prime_UTR 50.0%
AAAAGAAGGGTGGCCACAGG+TGG - chr1_3:35524517-35524536 None:intergenic 55.0%
CTCTCTCCACGTGGCACATT+TGG + chr1_3:35524582-35524601 Msa0116520:five_prime_UTR 55.0%
! TGGTGACGTGGATGAAGTGG+AGG - chr1_3:35524619-35524638 None:intergenic 55.0%
!! TTGGTGAGGGATTGGTGACG+TGG - chr1_3:35524631-35524650 None:intergenic 55.0%
CAACAAGGGGCCGTTTGGAT+TGG - chr1_3:35525547-35525566 None:intergenic 55.0%
CAATCCAAACGGCCCCTTGT+TGG + chr1_3:35525545-35525564 Msa0116520:intron 55.0%
GTTACCAACAAGGGGCCGTT+TGG - chr1_3:35525552-35525571 None:intergenic 55.0%
TTGGTCAGCGTTTGCGGGAT+GGG + chr1_3:35526447-35526466 Msa0116520:CDS 55.0%
!! GGAGTTAAGGTTGGTGAGGG+AGG + chr1_3:35526536-35526555 Msa0116520:CDS 55.0%
!! AAGGTTGGTGAGGGAGGGAA+TGG + chr1_3:35526542-35526561 Msa0116520:CDS 55.0%
GTACCGCAGCAACAGTCTCA+AGG + chr1_3:35526590-35526609 Msa0116520:CDS 55.0%
ACCGCAGCAACAGTCTCAAG+GGG + chr1_3:35526592-35526611 Msa0116520:CDS 55.0%
ATATCCCCCCTTTGAGCTGG+AGG + chr1_3:35527456-35527475 Msa0116520:intron 55.0%
CATTCGTGCTCAGGAGCAGT+GGG - chr1_3:35527574-35527593 None:intergenic 55.0%
ACATTCGTGCTCAGGAGCAG+TGG - chr1_3:35527575-35527594 None:intergenic 55.0%
TGAAGCCATGTTTGAGGGCG+AGG + chr1_3:35527874-35527893 Msa0116520:intron 55.0%
CACTTCCTCGCCCTCAAACA+TGG - chr1_3:35527882-35527901 None:intergenic 55.0%
CATGTTTGAGGGCGAGGAAG+TGG + chr1_3:35527880-35527899 Msa0116520:intron 55.0%
!!! GGCGAGGAAGTGGTTTTGAC+CGG + chr1_3:35527890-35527909 Msa0116520:intron 55.0%
!!! GGAAGTGGTTTTGACCGGAG+AGG + chr1_3:35527895-35527914 Msa0116520:intron 55.0%
GGGTCAGCATTCCAGTGACT+AGG + chr1_3:35527917-35527936 Msa0116520:intron 55.0%
ACCTGTGGCAGCATGTTTGG+AGG + chr1_3:35529076-35529095 Msa0116520:CDS 55.0%
TCCTCCAAACATGCTGCCAC+AGG - chr1_3:35529080-35529099 None:intergenic 55.0%
TGCCACTCCCACTAGACTGA+AGG - chr1_3:35529415-35529434 None:intergenic 55.0%
AGTGGGAGTGGCAGTGAAAG+TGG + chr1_3:35529422-35529441 Msa0116520:CDS 55.0%
GACTGGAAACACAAGGCCCA+AGG - chr1_3:35530003-35530022 None:intergenic 55.0%
CGCAAAGCCTAGTTCAAGGC+AGG - chr1_3:35530121-35530140 None:intergenic 55.0%
TGGTCCAGGAGCTCTGCAAA+AGG - chr1_3:35531169-35531188 None:intergenic 55.0%
TTCCTCCATCACTTGGGCAG+GGG - chr1_3:35531991-35532010 None:intergenic 55.0%
! ATTGCTGGCCTCCAGCTCTT+GGG - chr1_3:35532098-35532117 None:intergenic 55.0%
! AATTGCTGGCCTCCAGCTCT+TGG - chr1_3:35532099-35532118 None:intergenic 55.0%
AAGTCTCCCACCGGATGTGT+CGG + chr1_3:35532775-35532794 Msa0116520:CDS 55.0%
TTGCTTCCGACACATCCGGT+GGG - chr1_3:35532784-35532803 None:intergenic 55.0%
! TGGGCTGGAAAGCAGACGTT+TGG - chr1_3:35533008-35533027 None:intergenic 55.0%
CATCATGCTCAGGTGGCAAC+TGG - chr1_3:35533191-35533210 None:intergenic 55.0%
GATTCGGCATCATGCTCAGG+TGG - chr1_3:35533198-35533217 None:intergenic 55.0%
CTTGCTGGGAATAGTGGCAG+TGG + chr1_3:35533408-35533427 Msa0116520:CDS 55.0%
! AGTGGCAGTGGTGATGCTAG+TGG + chr1_3:35533420-35533439 Msa0116520:CDS 55.0%
GGAGGGGGGCTACACATTTA+AGG - chr1_3:35533711-35533730 None:intergenic 55.0%
!!! GGGTTTTTTTTGGGGGAGGG+GGG - chr1_3:35533725-35533744 None:intergenic 55.0%
!!! GGGGTTTTTTTTGGGGGAGG+GGG - chr1_3:35533726-35533745 None:intergenic 55.0%
TCCATGATGCTCATGCGGTG+GGG - chr1_3:35533752-35533771 None:intergenic 55.0%
GTCCATGATGCTCATGCGGT+GGG - chr1_3:35533753-35533772 None:intergenic 55.0%
! TGAAGTTGGTCTCTGGGTGG+AGG - chr1_3:35533854-35533873 None:intergenic 55.0%
CGTGATTCCCAGTGCATAGC+AGG - chr1_3:35533948-35533967 None:intergenic 55.0%
! TGGCTTGATGGGCATGGAGA+GGG - chr1_3:35534075-35534094 None:intergenic 55.0%
! GCCCATCAAGCCAGTTTTCC+TGG + chr1_3:35534082-35534101 Msa0116520:intron 55.0%
CCAAGAGAAGGTTCACAGCC+AGG - chr1_3:35534103-35534122 None:intergenic 55.0%
CCTGGCTGTGAACCTTCTCT+TGG + chr1_3:35534100-35534119 Msa0116520:intron 55.0%
TCGTGAAGCCCAGTAGAGTG+AGG + chr1_3:35534290-35534309 Msa0116520:intron 55.0%
! TGGCGTTTGGGATAACCGGA+CGG + chr1_3:35535235-35535254 Msa0116520:three_prime_UTR 55.0%
TTGGGATAACCGGACGGGAA+AGG + chr1_3:35535241-35535260 Msa0116520:three_prime_UTR 55.0%
TGGGATAACCGGACGGGAAA+GGG + chr1_3:35535242-35535261 Msa0116520:three_prime_UTR 55.0%
TGCAGAACCTGAACCGGGTT+TGG - chr1_3:35535586-35535605 None:intergenic 55.0%
CCCCAAACTCATCCCAGGTT+AGG - chr1_3:35535640-35535659 None:intergenic 55.0%
GACAACCCCAAACTCATCCC+AGG - chr1_3:35535645-35535664 None:intergenic 55.0%
CTTGGTCAGCGTTTGCGGGA+TGG + chr1_3:35526446-35526465 Msa0116520:CDS 60.0%
GCCCCTTGAGACTGTTGCTG+CGG - chr1_3:35526596-35526615 None:intergenic 60.0%
GCTTACAGCATGAGGCCCGA+AGG + chr1_3:35527393-35527412 Msa0116520:intron 60.0%
CACTCCTCCAGCTCAAAGGG+GGG - chr1_3:35527463-35527482 None:intergenic 60.0%
CCACTCCTCCAGCTCAAAGG+GGG - chr1_3:35527464-35527483 None:intergenic 60.0%
GCCACTCCTCCAGCTCAAAG+GGG - chr1_3:35527465-35527484 None:intergenic 60.0%
CGCCACTCCTCCAGCTCAAA+GGG - chr1_3:35527466-35527485 None:intergenic 60.0%
CCTTTGAGCTGGAGGAGTGG+CGG + chr1_3:35527464-35527483 Msa0116520:intron 60.0%
CTGGAATGCTGACCCCTCTC+CGG - chr1_3:35527912-35527931 None:intergenic 60.0%
CGTGGTTAGGCGAATGACCC+AGG + chr1_3:35528032-35528051 Msa0116520:intron 60.0%
! TGGGCACGCTCTAGCCTTCT+AGG + chr1_3:35528337-35528356 Msa0116520:intron 60.0%
GGCATGTCCTCATTCGTGGG+TGG + chr1_3:35530035-35530054 Msa0116520:intron 60.0%
GTATCCCCTTCCCCAAGAGC+TGG + chr1_3:35532084-35532103 Msa0116520:intron 60.0%
! TTGCTGGCCTCCAGCTCTTG+GGG - chr1_3:35532097-35532116 None:intergenic 60.0%
GTTGCTTCCGACACATCCGG+TGG - chr1_3:35532785-35532804 None:intergenic 60.0%
ATGCTCATGCGGTGGGGGTT+GGG - chr1_3:35533746-35533765 None:intergenic 60.0%
CCATGATGCTCATGCGGTGG+GGG - chr1_3:35533751-35533770 None:intergenic 60.0%
GGTCCATGATGCTCATGCGG+TGG - chr1_3:35533754-35533773 None:intergenic 60.0%
! CTGGCTTGATGGGCATGGAG+AGG - chr1_3:35534076-35534095 None:intergenic 60.0%
! GGCGTTTGGGATAACCGGAC+GGG + chr1_3:35535236-35535255 Msa0116520:three_prime_UTR 60.0%
CTTCTGGACCCTTTCCCGTC+CGG - chr1_3:35535253-35535272 None:intergenic 60.0%
GTTTGGTCACCGCAACGGGT+AGG - chr1_3:35535569-35535588 None:intergenic 60.0%
! ACCGGGTTTGGTCACCGCAA+CGG - chr1_3:35535574-35535593 None:intergenic 60.0%
CCCCCTTTGAGCTGGAGGAG+TGG + chr1_3:35527461-35527480 Msa0116520:intron 65.0%
CCGCCACTCCTCCAGCTCAA+AGG - chr1_3:35527467-35527486 None:intergenic 65.0%
TGCGACCCCTGCCCAAGTGA+TGG + chr1_3:35531983-35532002 Msa0116520:intron 65.0%
GACCCCTGCCCAAGTGATGG+AGG + chr1_3:35531986-35532005 Msa0116520:intron 65.0%
TCCCCTTCCCCAAGAGCTGG+AGG + chr1_3:35532087-35532106 Msa0116520:intron 65.0%
GCCTCCAGCTCTTGGGGAAG+GGG - chr1_3:35532091-35532110 None:intergenic 65.0%
GGCCTCCAGCTCTTGGGGAA+GGG - chr1_3:35532092-35532111 None:intergenic 65.0%
TGGCCTCCAGCTCTTGGGGA+AGG - chr1_3:35532093-35532112 None:intergenic 65.0%
TGCTCATGCGGTGGGGGTTG+GGG - chr1_3:35533745-35533764 None:intergenic 65.0%
GATGCTCATGCGGTGGGGGT+TGG - chr1_3:35533747-35533766 None:intergenic 65.0%
CCCCCACCGCATGAGCATCA+TGG + chr1_3:35533748-35533767 Msa0116520:intron 65.0%
! CCGGGTTTGGTCACCGCAAC+GGG - chr1_3:35535573-35535592 None:intergenic 65.0%
CCCGTTGCGGTGACCAAACC+CGG + chr1_3:35535570-35535589 Msa0116520:three_prime_UTR 65.0%
GCGGTGACCAAACCCGGTTC+AGG + chr1_3:35535576-35535595 Msa0116520:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35524480 35535840 35524480 ID=Msa0116520;Name=Msa0116520
chr1_3 mRNA 35524480 35535840 35524480 ID=Msa0116520-mRNA-1;Parent=Msa0116520;Name=Msa0116520-mRNA-1;_AED=0.17;_eAED=0.17;_QI=625|1|1|1|0.7|0.63|11|391|749
chr1_3 exon 35524480 35524870 35524480 ID=Msa0116520-mRNA-1:exon:11381;Parent=Msa0116520-mRNA-1
chr1_3 exon 35524982 35525121 35524982 ID=Msa0116520-mRNA-1:exon:11382;Parent=Msa0116520-mRNA-1
chr1_3 exon 35526307 35526731 35526307 ID=Msa0116520-mRNA-1:exon:11383;Parent=Msa0116520-mRNA-1
chr1_3 exon 35528707 35528868 35528707 ID=Msa0116520-mRNA-1:exon:11384;Parent=Msa0116520-mRNA-1
chr1_3 exon 35528977 35529110 35528977 ID=Msa0116520-mRNA-1:exon:11385;Parent=Msa0116520-mRNA-1
chr1_3 exon 35529419 35529580 35529419 ID=Msa0116520-mRNA-1:exon:11386;Parent=Msa0116520-mRNA-1
chr1_3 exon 35531176 35531356 35531176 ID=Msa0116520-mRNA-1:exon:11387;Parent=Msa0116520-mRNA-1
chr1_3 exon 35532291 35532657 35532291 ID=Msa0116520-mRNA-1:exon:11388;Parent=Msa0116520-mRNA-1
chr1_3 exon 35532750 35533554 35532750 ID=Msa0116520-mRNA-1:exon:11389;Parent=Msa0116520-mRNA-1
chr1_3 exon 35535106 35535279 35535106 ID=Msa0116520-mRNA-1:exon:11390;Parent=Msa0116520-mRNA-1
chr1_3 exon 35535516 35535840 35535516 ID=Msa0116520-mRNA-1:exon:11391;Parent=Msa0116520-mRNA-1
chr1_3 five_prime_UTR 35524480 35524870 35524480 ID=Msa0116520-mRNA-1:five_prime_utr;Parent=Msa0116520-mRNA-1
chr1_3 five_prime_UTR 35524982 35525121 35524982 ID=Msa0116520-mRNA-1:five_prime_utr;Parent=Msa0116520-mRNA-1
chr1_3 five_prime_UTR 35526307 35526400 35526307 ID=Msa0116520-mRNA-1:five_prime_utr;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35526401 35526731 35526401 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35528707 35528868 35528707 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35528977 35529110 35528977 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35529419 35529580 35529419 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35531176 35531356 35531176 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35532291 35532657 35532291 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35532750 35533554 35532750 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 CDS 35535106 35535213 35535106 ID=Msa0116520-mRNA-1:cds;Parent=Msa0116520-mRNA-1
chr1_3 three_prime_UTR 35535214 35535279 35535214 ID=Msa0116520-mRNA-1:three_prime_utr;Parent=Msa0116520-mRNA-1
chr1_3 three_prime_UTR 35535516 35535840 35535516 ID=Msa0116520-mRNA-1:three_prime_utr;Parent=Msa0116520-mRNA-1
Gene Sequence

>Msa0116520

ATGACAAGGGGTATCCAGATGAGTGTCAATGGTGACTGTAAAGAACTTGGTCAGCGTTTGCGGGATGGGAAGAACAACTTAAATGAAGGAGTAGCTGGAGAGGATGATGAAGTGAAATGTAATGGAGTGACTGATGGAGTTAAGGTTGGTGAGGGAGGGAATGGCGAATCCTCTTCTGTTCAGCAGCAAGTACCGCAGCAACAGTCTCAAGGGGCAATTATTTGTTGGGAGAGGTTTTTACATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTGTACCCGCCATATTGTCACTGCGTTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTGGTTTATCAGGCATTGCACTTCTATACAAGATTATGGGCCACCCAACACGGAAAAACATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGACTTTCTAGTAAAACCCATACGCAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGAACACAAACCCAGAAATCTATTAAATCAAGGAGTCTTGAAAAGTTTGATAACAATTCGGGAAGCAATGATGAGCAAGATAATGGAAGTTTAGGCCTGAACAATGGTGATGGTAGTGACAATGGTAGTGGCACTCAGAGCTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGGCTCTCAGTGGGATCAGATAGCTGAGTGTCCCGACAGCACTTGTGCTCAAGTTGTTCATTCCAATGCTGAAATATGCAGGGAAAAGATGGTTCCTCCAGTCTTAAAGGAGTGTCTAGAGAAAAAGGAACAAATAGTCAAAATTGCAGGTTCAAAACATGTCAACAGACTTGATGTGGGCCCCTCTAAATTCAATGAACAAATTAATAGAGGACAGATGGACCCTAATTGTGAGAATCAATCTGGCAAACTAAGATGCAAAGTGCTTTCATTATCTGATGCAGTTACTAGCCCTTCTGACTCTCAAATGCAAAGCGGAGAAATTGAAGCCCTAAATAGAAGACCCAACTTCTCAGATATTGACAACAAAGGTACTAATAATGATGAGGAGTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCCTAGAAAAGTTGAAGAAGCTGGTCCTGCAATTCAGGATGAACGGAACATTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCCACCTTCAATGCTAAGAAGTCTCCCACCGGATGTGTCGGAAGCAACTCTCCGCCTAATAACAGCTTAGAAGTTACAAAGAAAGATTCATCTCGCGATATTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGATGCTAGCAACAACATTGATATGGGTTCCACTGCTAATAATGCTTTTACCAAATCTGCAGTTATAAGAGAGCCAGCAGAGGCATCAACAACCAAATTTTTGTACCAAACGTCTGCTTTCCAGCCCATAAAAAACAACCTCATGTGTACCTCTCAACAAGTTGTCTCACATACTAATGAAGATACGACAACAACAATCCTGGCACCACCTAAAATTGACAAGGGTTCTGCTACTCAGGATTTGCATCACCATTATGAAAACCACAGCAATGTTGCTAACATGCAGCACCAGTTGCCACCTGAGCATGATGCCGAATCTTCAAAGAAAATGACTGTTGTTGCTCCACACTGTGGGTCATCAAATGTGGTCAAAGTGCCAGTTGAAGGTAATACGGGAAATTACAGTATCAATAGAAGTGCTTCAGGAAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCGCTGCAATTAATGCTGGAGGGACAAACATAGACAGCAACAATGGACTTGCTGGGAATAGTGGCAGTGGTGATGCTAGTGGAAATGGAAGTGGCAACAGAGTAGATCAAAACAAGAATTCTCAAAGGGAAGCAGCCCTAATTAAATTTCGCCAAAAAAGAAAGGAGAGAAAAGAGAGGTGCTTTCATAAGCAGGTTCGATATCAGAGCAGGCAGAAATTAGCTGAACAACGACCACGATATCGAGGGCAATTTGTGCGACAGTCCTCGAATGGTAATGCAAGTGAGGCAACAGATAGTTGA
Protein sequence

>Msa0116520

MTRGIQMSVNGDCKELGQRLRDGKNNLNEGVAGEDDEVKCNGVTDGVKVGEGGNGESSSVQQQVPQQQSQGAIICWERFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIALLYKIMGHPTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSRSLEKFDNNSGSNDEQDNGSLGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSGSQWDQIAECPDSTCAQVVHSNAEICREKMVPPVLKECLEKKEQIVKIAGSKHVNRLDVGPSKFNEQINRGQMDPNCENQSGKLRCKVLSLSDAVTSPSDSQMQSGEIEALNRRPNFSDIDNKGTNNDEELPSLELSLKRPRKVEEAGPAIQDERNILRRSDQSAFSRYNATFNAKKSPTGCVGSNSPPNNSLEVTKKDSSRDIQSHSSGNPPNQNSNDASNNIDMGSTANNAFTKSAVIREPAEASTTKFLYQTSAFQPIKNNLMCTSQQVVSHTNEDTTTTILAPPKIDKGSATQDLHHHYENHSNVANMQHQLPPEHDAESSKKMTVVAPHCGSSNVVKVPVEGNTGNYSINRSASGSNNGSNGQNGSSAAINAGGTNIDSNNGLAGNSGSGDASGNGSGNRVDQNKNSQREAALIKFRQKRKERKERCFHKQVRYQSRQKLAEQRPRYRGQFVRQSSNGNASEATDS*